Methods of affecting nitrogen assimilation in plants

ABSTRACT

Provided herein are compositions and methods for producing transgenic plants. In specific embodiments, transgenic plants comprise a construct comprising a polynucleotide encoding CCA1, GLK1 or bZIP1, operably linked to a plant-specific promote, wherein the CCA1, GLK1 or bZIP1 is ectopically overexpressed in the transgenic plants, and wherein the promoter is optionally a constitutive or inducible promoter. In other embodiments, transgenic plants in which express a lower level of CCA1, GLK1 or bZIP1 are provided. Also provided herein are commercial products (e.g., pulp, paper, paper products, or lumber) derived from the transgenic plants (e.g., transgenic trees) produced using the methods provided herein.

This application is a continuation of U.S. patent application Ser. No. 12/079,001, filed Mar. 24, 2008, which claims the benefit of U.S. Provisional Application No. 60/919,818 filed Mar. 23, 2007, each of which is hereby incorporated by reference herein in its entirety.

1. INTRODUCTION

Provided herein are compositions and methods for affecting nitrogen assimilation, usage and storage by overexpressing or underexpressing certain genes in plants. Such genes include nitrogen-responsive master regulatory control genes CCA1, GLK1 and bZIP1. In some embodiments, provided herein are compositions and methods for genetically engineering plants to increase CCA1 or GLK1 expression or decrease bZIP1 expression, or any combination thereof. In other embodiments, provided herein are compositions and methods for genetically engineering plants to decrease CCA1 or GLK1 expression or increase bZIP1 expression, or any combination thereof. In certain embodiments, the overexpression or underexpression is in a tissue- or cell-specific manner, e.g., in vegetative tissue or in leaves or in fruit or seeds, or in specific cell types (e.g., mesophyll, phloem, etc. In certain specific embodiments, a plant or tree is genetically engineered to increase or constitutively express CCA1 and GLK1 and to decrease expression of bZIP1 in vegetative (growing) tissues of the plant. Such genetically engineered plants are able to assimilate more nitrogen into Gln, such that more nitrogen is available for biosynthesis, and thereby grow larger, more efficiently or rapidly, and/or have increased biomass. Alternatively, the engineered plants may be used to achieve faster growing or maturing crops or, higher crop yields and/or more nutritious products. In certain embodiments, the engineered plants and methods thereof are used in the production of commercial products. Some non-limiting example include genetically engineered trees for e.g., the production of pulp, paper, paper products or lumber; tobacco, e.g., for the production of cigarettes, cigars, or chewing tobacco; crops, e.g., for the production of fruits, vegetables and other food, including grains, e.g., for the production of wheat, bread, flour, rice, corn; and soybean, canola, e.g., for the production of oils or biofuels. In other specific embodiments, a plant or tree is genetically engineered to increase or constitutively express bZIP1 and to decrease expression of CCA1 and GLK1 in leaves, fruit and/or seed tissues of the plant. This would serve to increase N-assimilation into Asn, an inert N-storage compound used to transport N to seed, for example.

2. BACKGROUND

Nitrate is a key required nutrient for the synthesis of amino acids, nucleotides and vitamins and is commonly considered to be the most limiting for normal plant growth (Vitousek et al., 2004, Biogeochemistry 13). Nitrogenous fertilizer is usually supplied as ammonium nitrate, potassium nitrate, or urea. Plants are keenly sensitive to nitrogen levels in the soil and, atypically of animal development, adopt their body plan to cope with their environment (Lopez-Bucio et al., 2003, Curr Opin Plant Biol 6:280-287; Malamy et al., 2005, Plant Cell Environ 28:67-77; Walch-Liu et al., 2006, Ann Bot (Lond) 97:875-81). For example, mutants in several general nitrogen (N)-assimilation genes affect root architecture (Little et al., 2005, Proc Natl Acad Sci USA 102:13693-13698; Remans et al., 2006, Proc Natl Acad Sci USA 103:19206-19211). Transduction of this nitrogen signal is linked to a massive and concerted gene expression response in the root (Gutierrez et al., 2007, Genome Biol 8:R7; Wang et al., 2003, Plant Physiol 132:556-67).

Studies on the regulation of genes involved in the N-assimilatory pathway have shown that genes involved in N-assimilation are regulated transcriptionally by both inorganic and organic forms of nitrogen (FIG. 1). Genes involved in the uptake and reduction of nitrate (NIA, NIR) are transcriptionally induced by nitrate. By contrast, the glutamine synthetase gene (GLN1.3) involved in assimilating inorganic N into organic form (Gln), is transcriptionally repressed by the endproducts of N-assimilation (Glu/Gln) (FIG. 1). The repression of GLN1.3 expression by the product of the GS enzyme reaction serves as a negative feedback loop, that shuts off further assimilation of inorganic N into Gln, when levels of Gln are abundant. As GS is and ATP dependent enzyme, this is likely to be an energy conservation mechanism. By contrast, Gln/Glu levels activate the expression of the ASN1 gene (asparagine synthetase) which serves to transfer the amide N from Gln onto Asp to make Asn and Glu as a by-product. Asn is an inert amino acid used to store N and used for long distance N-transport (e.g., to seed). The induction of ASN1 by Glu/Gln is a mechanism that serves to store excess N as Asn, which is used to transport N to seed.

It would be advantageous to produce plants that would continue to assimilate and utilize N or to store N depending on whether a vegetative plant part or seed is the product, respectively, making N-assimilation independent of the Glu/Gln biofeedback pathway. N-assimilated into Glu/Gln by GS is used in the biosynthesis of all N-containing compounds including essentially all other amino acids, nucleic acids and chlorophyll. By contrast, the conversion of Gln to Asn (an inert N source) is used to transport and store N in seed.

3. SUMMARY

Master control genes (CCA1, GLK1, and bZIP11) that control N-assimilation in response to Glu sensing have been identified in the present invention. As these genes are transcription factor hubs, they coordinate the N-regulation of the N-assimilatory gene network, with genome-wide responses associated with growth and development in plants. Thus, effecting genome-wide changes in N-assimilation, plant growth and development, by the transgenic manipulation of these master control genes in plants will effect nitrogen use efficiency in vegetative tissues (leaves & roots) and also in seed. Changes in levels of N-assimilated into Gln effect changes in growth of vegetative tissues, while changes in levels of Asn affect seed development and nitrogen content.

Thus, the present invention relates to the transgenic manipulation of these N-responsive master regulatory genes (CCA1, GLK1, and bZIP11) that control N-assimilation, and other related processes in response to N treatments, so as to increase the overall N-assimilation capacity, whether for increased N usage or N storage. The overexpression of these master control genes (e.g., uncoupled from Glu repression) effectively releases N-assimilation from the feedback repression loop by Glu-leading to increased N-assimilation and usage. As these regulatory genes serve to respond to Glu levels by reciprocally regulating the amount of N-assimilated into Gln versus the amount of Gln metabolized to Asn (for N-storage and transport), the manipulation of these genes in transgenic plants can be used to optimize N-assimilation into Gln versus Asn (FIG. 2, FIG. 12). Increased N-assimilation is advantageous in all crops. Additionally, in seed crops, the increased synthesis of Asn increases N-transported and stored in seed. The genes, CCA1, GLK1 and/or bZIP1, can be expressed using constitutive promoters. Alternately, developmentally regulated promoters can be used to over express CCA1 and/or GLK1 that favors Gln production early in the life cycle, while switching to overexpressing bZIP1 which favors Asn production later in the life cycle (e.g., during seed set). Further, underexpressing CCA1 and/or GLK1 favors Asn production and underexpressing bZIP1 favors Gln production.

As CCA1/GLK1 and bZIP11 are master regulatory genes controlling genes in the N-assimilatory pathway as well as other processes, the manipulation of these genes in transgenic plants can coordinate an increase in N-assimilation and usage (increased Gln synthesis), and/or an increase in stored N (increased Asn synthesis) with genes controlling aspects of growth and development, that are also targets for these master regulatory genes.

Thus, in one embodiment, the present invention is directed to a method for improving nitrogen assimilation and usage in a plant in which more nitrogen is available for biosynthesis, said method comprising overexpressing GLK1 in the plant. In another embodiment, the present invention is directed to a method for improving nitrogen assimilation and usage in a plant in which more nitrogen is available for biosynthesis, said method comprising overexpressing CCA1 in the plant. In yet another embodiment, the present invention is directed to a method for improving nitrogen assimilation and usage in a plant in which more nitrogen is available for biosynthesis, said method comprising underexpressing bZIP1 in the plant.

In another embodiment, the method for improving nitrogen assimilation and usage in a plant in which more nitrogen is available for biosynthesis comprises overexpressing CCA1 and GLK1 in the plant. In another embodiment, the method for improving nitrogen assimilation and usage in a plant in which more nitrogen is available for biosynthesis comprises overexpressing CCA1 and underexpressing bZIP1 in the plant, or overexpressing GLK1 and underexpressing bZIP1 in the plant. In yet another embodiment, the method for improving nitrogen assimilation and usage in a plant in which more nitrogen is available for biosynthesis comprises overexpressing CCA1, overexpressing GLK1 and underexpressing bZIP1 in the plant.

The present invention is also directed to methods for altering nitrogen assimilation and storage, e.g., increasing nitrogen storage, in a plant. In one embodiment, the method comprises overexpressing bZIP1 in the plant. In another embodiment, the method comprises underexpressing CCA1 in the plant and/or underexpressing GLK1 in the plant. In another embodiment, the method overexpressing bZIP1 and underexpressing CCA1 and/or GLK1 in the plant. In yet another embodiment, the method comprises overexpressing bZIP1, and underexpressing CCA1 and underexpressing GLK1 in the plant.

In certain embodiments, the plant is species of woody, ornamental, decorative, crop, cereal, fruit, or vegetable. In other embodiments, the plant is a species of one of the following genuses: Acorus, Aegilops, Allium, Amborella, Antirrhinum, Apium, Arabidopsis, Arachis, Beta, Betula, Brassica, Capsicum, Ceratopteris, Citrus, Cryptomeria, Cycas, Descurainia, Eschscholzia, Eucalyptus, Glycine, Gossypium, Hedyotis, Helianthus, Hordeum, Ipomoea, Lactuca, Linum, Liriodendron, Lotus, Lupinus, Lycopersicon, Medicago, Mesembryanthemum, Nicotiana, Nuphar, Pennisetum, Persea, Phaseolus, Physcomitrella, Picea, Pinus, Poncirus, Populus, Prunus, Robinia, Rosa, Saccharum, Schedonorus, Secale, Sesamum, Solanum, Sorghum, Stevia, Thellungiella, Theobroma, Triphysaria, Triticum, Vitis, Zea, or Zinnia.

The overexpression of a particular gene can be accomplished by any method known in the art, for example, by transforming a plant cell with a nucleic acid vector comprising the coding sequences of the desired gene operably linked to a promoter active in a plant cell such that the desired gene is expressed at levels higher than normal, i.e., levels found in a control/nontransgenic plant. Such promoters can be constitutively active in all or some plant tissues or can be inducible.

The underexpression of a desired gene can be accomplished by any method known in the art, such as knocking out the gene or mutating the gene transgenically such that lower than normal levels of the gene product is produced in the transgenic cells or plant. For example, such mutations include frame-shift mutations or mutations resulting in a stop codon in the wild-type coding sequence, thus preventing expression of the gene product. Another exemplary mutation would be the removal of the transcribed sequences from the plant genome, for example, by homologous recombination. Another method for underexpressing a gene is transgenically introducing an insertion or deletion into the transcribed sequence or an insertion or deletion upstream or downstream of the transcribed sequence such that expression of the gene product is decreased as compared to wild-type or appropriate control. Additionally, microRNA can be used to target a particular encoding mRNA for degradation, thus reducing the level of the expressed gene product in the transgenic plant cell.

The present invention is also directed to a transgenic plant produced by any of the foregoing methods.

The present invention is also directed to compositions for modulating gene expression in plants. The compositions comprise constructs for the expression of CCA1, GLK1 or bZIP1. In certain embodiments, a construct of the invention comprises a promoter, such as a tissue specific promoter, which is expressed in a plant cell, such as a leaf cell, and promotes the expression of CCA1, GLK1 or bZIP1.

Any of a variety of promoters can be utilized in the constructs of the invention depending on the desired outcome. Tissue-specific or tissue-preferred promoters, inducible promoters, developmental promoters, constitutive promoters and/or chimeric promoters can be used to direct expression of the gene product in specific cells or organs the plant, when fused to the appropriate cell or organ specific promoter.

Chimeric constructs expressing CCA1, GLK1 or bZIP1 in transgenic plants (using constitutive or inducible promoters) can be used in the compositions and methods provided herein to enhance nitrogen assimilation and usage or increase nitrogen storage.

The present invention is also directed to a transgenic plant-derived commercial product. In one embodiment, the transgenic plant is a tree, and said commercial product is pulp, paper, a paper product, or lumber. In another embodiment, the transgenic plant is tobacco, and said commercial product is a cigarette, cigar, or chewing tobacco. In yet another embodiment, the transgenic plant is a crop, and said commercial product is a fruit or vegetable. In yet another embodiment, the transgenic plant is a grain, and said commercial product is bread, flour, cereal, oat meal, or rice. In another embodiment, the product is a biofuel or a plant oil.

4. TERMINOLOGY

Units, prefixes, and symbols may be denoted in their SI accepted form. Unless otherwise indicated, nucleic acids are written left to right in 5′ to 3′ orientation; amino acid sequences are written left to right in amino to carboxyl orientation, respectively. Numeric ranges recited within the specification are inclusive of the numbers defining the range and include each integer within the defined range. Amino acids may be referred to herein by either their commonly known three letter symbols or by the one-letter symbols recommended by the IUPAC-IUB Biochemical Nomenclature Commission. Nucleotides, likewise, may be referred to by their commonly accepted single-letter codes. Unless otherwise provided for, software, electrical, and electronics terms as used herein are as defined in The New IEEE Standard Dictionary of Electrical and Electronics Terms (5th edition, 1993). The terms defined below are more fully defined by reference to the specification as a whole.

As used herein, the term “agronomic” includes, but is not limited to, changes in root size, vegetative yield, seed yield or overall plant growth. Other agronomic properties include factors desirable to agricultural production and business.

By “amplified” is meant the construction of multiple copies of a nucleic acid sequence or multiple copies complementary to the nucleic acid sequence using at least one of the nucleic acid sequences as a template. Amplification systems include the polymerase chain reaction (PCR) system, ligase chain reaction (LCR) system, nucleic acid sequence based amplification (NASBA, Cangene, Mississauga, Ontario), Q-Beta Replicase systems, transcription-based amplification system (TAS), and strand displacement amplification (SDA). See, e.g., Diagnostic Molecular Microbiology: Principles and Applications, D. H. Persing et al., Ed., 1993, American Society for Microbiology, Washington, D.C. The product of amplification is termed an amplicon.

As used herein, “antisense orientation” includes reference to a duplex polynucleotide sequence that is operably linked to a promoter in an orientation where the antisense strand is transcribed. The antisense strand is sufficiently complementary to an endogenous transcription product such that translation of the endogenous transcription product is often inhibited.

In its broadest sense, a “delivery system,” as used herein, is any vehicle capable of facilitating delivery of a nucleic acid (or nucleic acid complex) to a cell and/or uptake of the nucleic acid by the cell.

The term “ectopic” is used herein to mean abnormal subcellular (e.g., switch between organellar and cytosolic localization), cell-type, tissue-type and/or developmental or temporal expression (e.g., light/dark) patterns for the particular gene or enzyme in question. Such ectopic expression does not necessarily exclude expression in tissues or developmental stages normal for said enzyme but rather entails expression in tissues or developmental stages not normal for the said enzyme.

By “endogenous nucleic acid sequence” and similar terms, it is intended that the sequences are natively present in the recipient plant genome and not substantially modified from its original form.

The term “exogenous nucleic acid sequence” as used herein refers to a nucleic acid foreign to the recipient plant host or, native to the host if the native nucleic acid is substantially modified from its original form. For example, the term includes a nucleic acid originating in the host species, where such sequence is operably linked to a promoter that differs from the natural or wild-type promoter.

By “encoding” or “encoded”, with respect to a specified nucleic acid, is meant comprising the information for translation into the specified protein. A nucleic acid encoding a protein may comprise non-translated sequences (e.g., introns) within translated regions of the nucleic acid, or may lack such intervening non-translated sequences (e.g., as in cDNA). The information by which a protein is encoded is specified by the use of codons. Typically, the amino acid sequence is encoded by the nucleic acid using the “universal” genetic code. However, variants of the universal code, such as are present in some plant, animal, and fungal mitochondria, the bacterium Mycoplasma capricolum, or the ciliate Macronucleus, may be used when the nucleic acid is expressed therein.

When the nucleic acid is prepared or altered synthetically, advantage can be taken of known codon preferences of the intended host where the nucleic acid is to be expressed. For example, although nucleic acid sequences of the present invention may be expressed in both monocotyledonous and dicotyledonous plant species, sequences can be modified to account for the specific codon preferences and GC content preferences of monocotyledons or dicotyledons as these preferences have been shown to differ (Murray et al., 1989, Nucl. Acids Res. 17: 477-498). Thus, the maize preferred codon for a particular amino acid may be derived from known gene sequences from maize. Maize codon usage for 28 genes from maize plants is listed in Table 4 of Murray et al., supra.

By “fragment” is intended a portion of the nucleotide sequence. Fragments of the modulator sequence will generally retain the biological activity of the native suppressor protein. Alternatively, fragments of the targeting sequence may or may not retain biological activity. Such targeting sequences may be useful as hybridization probes, as antisense constructs, or as co-suppression sequences. Thus, fragments of a nucleotide sequence may range from at least about 20 nucleotides, about 50 nucleotides, about 100 nucleotides, and up to the full-length nucleotide sequence of the invention.

As used herein “full-length sequence” in reference to a specified polynucleotide or its encoded protein means having the entire amino acid sequence of, a native (non-synthetic), endogenous, biologically active form of the specified protein. Methods to determine whether a sequence is full-length are well known in the art including such exemplary techniques as northern or western blots, primer extension, 51 protection, and ribonuclease protection. See, e.g., Plant Molecular Biology: A Laboratory Manual, Clark, Ed., 1997, Springer-Verlag, Berlin. Comparison to known full-length homologous (orthologous and/or paralogous) sequences can also be used to identify full-length sequences of the present invention. Additionally, consensus sequences typically present at the 5′ and 3′ untranslated regions of mRNA aid in the identification of a polynucleotide as full-length. For example, the consensus sequence ANNNNAUGG, where the underlined codon represents the N-terminal methionine, aids in determining whether the polynucleotide has a complete 5′ end. Consensus sequences at the 3′ end, such as polyadenylation sequences, aid in determining whether the polynucleotide has a complete 3′ end.

The term “gene activity” refers to one or more steps involved in gene expression, including transcription, translation, and the functioning of the protein encoded by the gene.

The term “genetic modification” as used herein refers to the introduction of one or more exogenous nucleic acid sequences, e.g., CCA1, GLK1 or bZIP1 encoding sequences, as well as regulatory sequences, into one or more plant cells, which in certain cases can generate whole, sexually competent, viable plants. The term “genetically modified” or “genetically engineered” as used herein refers to a plant which has been generated through the aforementioned process. Genetically modified plants of the invention are capable of self-pollinating or cross-pollinating with other plants of the same species so that the foreign gene, carried in the germ line, can be inserted into or bred into agriculturally useful plant varieties.

As used herein, “heterologous” in reference to a nucleic acid is a nucleic acid that originates from a foreign species, or, if from the same species, is substantially modified from its native form in composition and/or genomic locus by deliberate human intervention. For example, a promoter operably linked to a heterologous structural gene is from a species different from that from which the structural gene was derived, or, if from the same species, one or both are substantially modified from their original form. A heterologous protein may originate from a foreign species or, if from the same species, is substantially modified from its original form by deliberate human intervention.

By “host cell” is meant a cell that contains a vector and supports the replication and/or expression of the vector. Host cells may be prokaryotic cells such as E. coli, or eukaryotic cells such as yeast, plant, insect, amphibian, or mammalian cells. Preferably, host cells are monocotyledonous or dicotyledonous plant cells. A particularly preferred monocotyledonous host cell is a maize host cell.

The term “introduced” in the context of inserting a nucleic acid into a cell, means “transfection” or “transformation” or “transduction” and includes reference to the incorporation of a nucleic acid into a eukaryotic or prokaryotic cell where the nucleic acid may be incorporated into the genome of the cell (e.g., chromosome, plasmid, plastid or mitochondrial DNA), converted into an autonomous replicon, or transiently expressed (e.g., transfected mRNA).

The term “isolated” refers to material, such as a nucleic acid or a protein, which is: (1) substantially or essentially free from components which normally accompany or interact with it as found in its natural environment. The isolated material optionally comprises material not found with the material in its natural environment; or (2) if the material is in its natural environment, the material has been synthetically altered or synthetically produced by deliberate human intervention and/or placed at a different location within the cell. The synthetic alteration or creation of the material can be performed on the material within or apart from its natural state. For example, a naturally-occurring nucleic acid becomes an isolated nucleic acid if it is altered or produced by non-natural, synthetic methods, or if it is transcribed from DNA which has been altered or produced by non-natural, synthetic methods. See, e.g., Compounds and Methods for Site Directed Mutagenesis in Eukaryotic Cells, Kmiec, U.S. Pat. No. 5,565,350; In vivo Homologous Sequence Targeting in Eukaryotic Cells; Zarling et al., PCT/US93/03868. The isolated nucleic acid may also be produced by the synthetic re-arrangement (“shuffling”) of a part or parts of one or more allelic forms of the gene of interest. Likewise, a naturally-occurring nucleic acid (e.g., a promoter) becomes isolated if it is introduced to a different locus of the genome. Nucleic acids which are “isolated,” as defined herein, are also referred to as “heterologous” nucleic acids.

As used herein, the term “marker” refers to a gene encoding a trait or a phenotype which permits the selection of, or the screening for, a plant or plant cell containing the marker.

As used herein, “nucleic acid” includes reference to a deoxyribonucleotide or ribonucleotide polymer, or chimeras thereof, in either single- or double-stranded form, and unless otherwise limited, encompasses known analogues having the essential nature of natural nucleotides in that they hybridize to single-stranded nucleic acids in a manner similar to naturally occurring nucleotides (e.g., peptide nucleic acids).

By “nucleic acid library” is meant a collection of isolated DNA or RNA molecules which comprise and substantially represent the entire transcribed fraction of a genome of a specified organism or of a tissue from that organism. Construction of exemplary nucleic acid libraries, such as genomic and cDNA libraries, is taught in standard molecular biology references such as Berger and Kimmel, Guide to Molecular Cloning Techniques, Methods in Enzymology, Vol. 152, Academic Press, Inc., San Diego, Calif. (Berger); Sambrook et al., 1989, Molecular Cloning—A Laboratory Manual, 2nd ed., Vol. 1-3; and Current Protocols in Molecular Biology, F. M. Ausubel et al., Eds., 1994, Current Protocols, a joint venture between Greene Publishing Associates, Inc. and John Wiley & Sons, Inc.

As used herein “operably linked” includes reference to a functional linkage between a promoter and a second sequence, wherein the promoter sequence initiates and mediates transcription of the DNA sequence corresponding to the second sequence. Generally, operably linked means that the nucleic acid sequences being linked are contiguous and, where necessary to join two protein coding regions, contiguous and in the same reading frame.

He term “orthologous” as used herein describes a relationship between two or more polynucleotides or proteins. Two polynucleotides or proteins are “orthologous” to one another if they are derived from a common ancestral gene and serve a similar function in different organisms. In general, orthologous polynucleotides or proteins will have similar catalytic functions (when they encode enzymes) or will serve similar structural functions (when they encode proteins or RNA that form part of the ultrastructure of a cell).

The term “overexpression” is used herein to mean above the normal expression level in the particular tissue, all and/or developmental or temporal stage for said enzyme/expressed protein product.

As used herein, the term “plant” is used in its broadest sense, including, but is not limited to, any species of woody, ornamental or decorative, crop or cereal, fruit or vegetable plant, and algae (e.g., Chlamydomonas reinhardtii). Non-limiting examples of plants include plants from the genus Arabidopsis or the genus Oryza. Other examples include plants from the genuses Acorus, Aegilops, Allium, Amborella, Antirrhinum, Apium, Arachis, Beta, Betula, Brassica, Capsicum, Ceratopteris, Citrus, Cryptomeria, Cycas, Descurainia, Eschscholzia, Eucalyptus, Glycine, Gossypium, Hedyotis, Helianthus, Hordeum, Ipomoea, Lactuca, Linum, Liriodendron, Lotus, Lupinus, Lycopersicon, Medicago, Mesembryanthemum, Nicotiana, Nuphar, Pennisetum, Persea, Phaseolus, Physcomitrella, Picea, Pinus, Poncirus, Populus, Prunus, Robinia, Rosa, Saccharum, Schedonorus, Secale, Sesamum, Solanum, Sorghum, Stevia, Thellungiella, Theobroma, Triphysaria, Triticum, Vitis, Zea, or Zinnia.” Plants included in the invention are any plants amenable to transformation techniques, including gymnosperms and angiosperms, both monocotyledons and dicotyledons. Examples of monocotyledonous angiosperms include, but are not limited to, asparagus, field and sweet corn, barley, wheat, rice, sorghum, onion, pearl millet, rye and oats and other cereal grains. Examples of dicotyledonous angiosperms include, but are not limited to tomato, tobacco, cotton, rapeseed, field beans, soybeans, peppers, lettuce, peas, alfalfa, clover, cole crops or Brassica oleracea (e.g., cabbage, broccoli, cauliflower, brussel sprouts), radish, carrot, beets, eggplant, spinach, cucumber, squash, melons, cantaloupe, sunflowers and various ornamentals. Examples of woody species include poplar, pine, sequoia, cedar, oak, etc. Still other examples of plants include, but are not limited to, wheat, cauliflower, tomato, tobacco, corn, petunia, trees, etc. As used herein, the term “cereal crop” is used in its broadest sense. The term includes, but is not limited to, any species of grass, or grain plant (e.g., barley, corn, oats, rice, wild rice, rye, wheat, millet, sorghum, triticale, etc.), non-grass plants (e.g., buckwheat flax, legumes or soybeans, etc.). As used herein, the term “crop” or “crop plant” is used in its broadest sense. The term includes, but is not limited to, any species of plant or algae edible by humans or used as a feed for animals or used, or consumed by humans, or any plant or algae used in industry or commerce. As used herein, the term “plant” also refers to either a whole plant, a plant part, or organs (e.g., leaves, stems, roots, etc.), a plant cell, or a group of plant cells, such as plant tissue, plant seeds and progeny of same. Plantlets are also included within the meaning of “plant.” The class of plants which can be used in the methods of the invention is generally as broad as the class of higher plants amenable to transformation techniques, including both monocotyledonous and dicotyledonous plants.

The term “plant cell” as used herein refers to protoplasts, gamete producing cells, and cells which regenerate into whole plants. Plant cell, as used herein, further includes, without limitation, cells obtained from or found in: seeds, suspension cultures, embryos, meristematic regions, callus tissue, leaves, roots, shoots, gametophytes, sporophytes, pollen, and microspores. Plant cells can also be understood to include modified cells, such as protoplasts, obtained from the aforementioned tissues.

As used herein, “polynucleotide” includes reference to a deoxyribopolynucleotide, ribopolynucleotide, or chimeras or analogs thereof that have the essential nature of a natural deoxy- or ribo-nucleotide in that they hybridize, under stringent hybridization conditions, to substantially the same nucleotide sequence as naturally occurring nucleotides and/or allow translation into the same amino acid(s) as the naturally occurring nucleotide(s). A polynucleotide can be full-length or a subsequence of a native or heterologous structural or regulatory gene. Unless otherwise indicated, the term includes reference to the specified sequence as well as the complementary sequence thereof. Thus, DNAs or RNAs with backbones modified for stability or for other reasons are “polynucleotides” as that term is intended herein. Moreover, DNAs or RNAs comprising unusual bases, such as inosine, or modified bases, such as tritylated bases, to name just two examples, are polynucleotides as the term is used herein. It will be appreciated that a great variety of modifications have been made to DNA and RNA that serve many useful purposes known to those of skill in the art. The term polynucleotide as it is employed herein embraces such chemically-, enzymatically- or metabolically-modified forms of polynucleotides, as well as the chemical forms of DNA and RNA characteristic of viruses and cells, including among other things, simple and complex cells.

The terms “polypeptide”, “peptide” and “protein” are used interchangeably herein to refer to a polymer of amino acid residues. The terms apply to amino acid polymers in which one or more amino acid residue is an artificial chemical analogue of a corresponding naturally-occurring amino acid, as well as to naturally-occurring amino acid polymers. The essential nature of such analogues of naturally-occurring amino acids is that, when incorporated into a protein, that protein is specifically reactive to antibodies elicited to the same protein but consisting entirely of naturally occurring amino acids. The terms “polypeptide”, “peptide” and “protein” are also inclusive of modifications including, but not limited to, glycosylation, lipid attachment, sulfation, gamma-carboxylation of glutamic acid residues, hydroxylation and ADP-ribosylation. Further, this invention contemplates the use of both the methionine-containing and the methionine-less amino terminal variants of the protein of the invention.

As used herein “promoter” includes reference to a region of DNA upstream from the start of transcription and involved in recognition and binding of RNA polymerase and other proteins to initiate transcription. A “plant promoter” is a promoter capable of initiating transcription in plant cells whether or not its origin is a plant cell. Exemplary plant promoters include, but are not limited to, those that are obtained from plants, plant viruses, and bacteria which comprise genes expressed in plant cells such Agrobacterium or Rhizobium. Examples of promoters under developmental control include promoters that preferentially initiate transcription in certain tissues, such as leaves, roots, or seeds. Such promoters are referred to as “tissue preferred.” Promoters which initiate transcription only in certain tissue are referred to as “tissue specific.” A “cell type” specific promoter primarily drives expression in certain cell types in one or more organs, for example, vascular cells in roots or leaves. An “inducible” or “repressible” promoter is a promoter which is under environmental control. Examples of environmental conditions that may effect transcription by inducible promoters include anaerobic conditions or the presence of light. Tissue specific, tissue preferred, cell type specific, and inducible promoters represent the class of “non-constitutive” promoters. A “constitutive” promoter is a promoter which is active under most environmental conditions.

As used herein “recombinant” includes reference to a cell or vector that has been modified by the introduction of a heterologous nucleic acid, or to a cell derived from a cell so modified. Thus, for example, recombinant cells express genes that are not found in identical form within the native (non-recombinant) form of the cell, or exhibit altered expression of native genes, as a result of deliberate human intervention. The term “recombinant” as used herein does not encompass the alteration of the cell or vector by events (e.g., spontaneous mutation, natural transformation, transduction, or transposition) occurring without deliberate human intervention.

As used herein, a “recombinant expression cassette” is a nucleic acid construct, generated recombinantly or synthetically, with a series of specified nucleic acid elements which permit transcription of a particular nucleic acid in a host cell. The recombinant expression cassette can be incorporated into a plasmid, chromosome, mitochondrial DNA, plastid DNA, virus, or nucleic acid fragment. Typically, the recombinant expression cassette portion of an expression vector includes, among other sequences, a nucleic acid to be transcribed, and a promoter.

The term “regulatory sequence” as used herein refers to a nucleic acid sequence capable of controlling the transcription of an operably associated gene. Therefore, placing a gene under the regulatory control of a promoter or a regulatory element means positioning the gene such that the expression of the gene is controlled by the regulatory sequence(s). Because a microRNA binds to its target, it is a post transcriptional mechanism for regulating levels of mRNA. Thus, an miRNA can also be considered a “regulatory sequence” herein. Not just transcription factors.

The term “residue” or “amino acid residue” or “amino acid” are used interchangeably herein to refer to an amino acid that is incorporated into a protein, polypeptide, or peptide (collectively “protein”). The amino acid may be a naturally occurring amino acid and, unless otherwise limited, may encompass non-natural analogs of natural amino acids that can function in a similar manner as naturally occurring amino acids.

The term “tissue-specific promotor” is a polynucleotide sequence that specifically binds to transcription factors expressed primarily or only in such specific tissue.

The term “selectively hybridizes” includes reference to hybridization, under stringent hybridization conditions, of a nucleic acid sequence to a specified nucleic acid target sequence to a detectably greater degree (e.g., at least 2-fold over background) than its hybridization to non-target nucleic acid sequences and to the substantial exclusion of non-target nucleic acids. Selectively hybridizing sequences typically have about at least 80% sequence identity, preferably 90% sequence identity, and most preferably 100% sequence identity (i.e., complementary) with each other.

As used herein, a “stem-loop motif” or a “stem-loop structure,” sometimes also referred to as a “hairpin structure,” is given its ordinary meaning in the art, i.e., in reference to a single nucleic acid molecule having a secondary structure that includes a double-stranded region (a “stem” portion) composed of two regions of nucleotides (of the same molecule) forming either side of the double-stranded portion, and at least one “loop” region, comprising uncomplemented nucleotides (i.e., a single-stranded region).

The term “stringent conditions” or “stringent hybridization conditions” includes reference to conditions under which a probe will selectively hybridize to its target sequence, to a detectably greater degree than to other sequences (e.g., at least 2-fold over background). Stringent conditions are sequence-dependent and will be different in different circumstances. By controlling the stringency of the hybridization and/or washing conditions, target sequences can be identified which are 100% complementary to the probe (homologous probing). Alternatively, stringency conditions can be adjusted to allow some mismatching in sequences so that lower degrees of similarity are detected (heterologous probing). Generally, a probe is less than about 1000 nucleotides in length, optionally less than 500 nucleotides in length.

Typically, stringent conditions will be those in which the salt concentration is less than about 1.5 M Na ion, typically about 0.01 to 1.0 M Na ion concentration (or other salts) at pH 7.0 to 8.3 and the temperature is at least about 30° C. for short probes (e.g., 10 to 50 nucleotides) and at least about 60° C. for long probes (e.g., greater than 50 nucleotides). Stringent conditions may also be achieved with the addition of destabilizing agents such as formamide. Exemplary low stringency conditions include hybridization with a buffer solution of 30 to 35% formamide, 1 M NaCl, 1% SDS (sodium dodecyl sulphate) at 37° C., and a wash in 1× to 2×SSC (20×SSC=3.0 M NaCl/0.3 M trisodium citrate) at 50 to 55° C. Exemplary moderate stringency conditions include hybridization in 40 to 45% formamide, 1 M NaCl, 1% SDS at 37° C., and a wash in 0.5× to 1×SSC at 55 to 60° C. Exemplary high stringency conditions include hybridization in 50% formamide, 1 M NaCl, 1% SDS at 37° C., and a wash in 0.1×SSC at 60 to 65° C.

Specificity is typically the function of post-hybridization washes, the critical factors being the ionic strength and temperature of the final wash solution. For DNA-DNA hybrids, the T_(m) can be approximated from the equation of Meinkoth and Wahl, 1984, Anal. Biochem., 138:267-284: T_(m)=81.5° C.+16.6 (log M)+0.41 (% GC)−0.61 (% form)−500/L; where M is the molarity of monovalent cations, % GC is the percentage of guanosine and cytosine nucleotides in the DNA, % form is the percentage of formamide in the hybridization solution, and L is the length of the hybrid in base pairs. The T_(m) is the temperature (under defined ionic strength and pH) at which 50% of a complementary target sequence hybridizes to a perfectly matched probe. T_(m) is reduced by about 1° C. for each 1% of mismatching; thus, T_(m), hybridization and/or wash conditions can be adjusted to hybridize to sequences of the desired identity. For example, if sequences with ≧90% identity are sought, the T_(m) can be decreased 10° C. Generally, stringent conditions are selected to be about 5° C. lower than the thermal melting point (T_(m)) for the specific sequence and its complement at a defined ionic strength and pH. However, severely stringent conditions can utilize a hybridization and/or wash at 1, 2, 3, or 4° C. lower than the thermal melting point (T_(m)); moderately stringent conditions can utilize a hybridization and/or wash at 6, 7, 8, 9, or 10° C. lower than the thermal melting point (T_(m)); low stringency conditions can utilize a hybridization and/or wash at 11, 12, 13, 14, 15, or 20° C. lower than the thermal melting point (T_(m)). Using the equation, hybridization and wash compositions, and desired T_(m), those of ordinary skill will understand that variations in the stringency of hybridization and/or wash solutions are inherently described. If the desired degree of mismatching results in a T_(m) of less than 45° C. (aqueous solution) or 32° C. (formamide solution) it is preferred to increase the SSC concentration so that a higher temperature can be used. An extensive guide to the hybridization of nucleic acids is found in Tijssen, 1993, Laboratory Techniques in Biochemistry and Molecular Biology—Hybridization with Nucleic Acid Probes, Part I, Chapter 2 “Overview of principles of hybridization and the strategy of nucleic acid probe assays”, Elsevier, New York; and Current Protocols in Molecular Biology, Chapter 2, Ausubel et al., Eds., 1995, Greene Publishing and Wiley-Interscience, New York. Hybridization and/or wash conditions can be applied for at least 10, 30, 60, 90, 120, or 240 minutes.

As used herein, “transcription factor” includes reference to a protein which interacts with a DNA regulatory element to affect expression of a structural gene or expression of a second regulatory gene. “Transcription factor” may also refer to the DNA encoding said transcription factor protein. The function of a transcription factor may include activation or repression of transcription initiation.

The term “transfection,” as used herein, refers to the introduction of a nucleic acid into a cell, for example, a nucleotide sequence able to be transcribed to produce CCA1, GLK1 or BZIP1 protein.

As used herein, the term “transformation” means alteration of the genotype of a host plant by the introduction of a CCA1, GLK1 or BZIP1 nucleic acid sequence.

As used herein, “transgenic plant” includes reference to a plant which comprises within its genome a heterologous polynucleotide. Generally, the heterologous polynucleotide is stably integrated within the genome such that the polynucleotide is passed on to successive generations. The heterologous polynucleotide may be integrated into the genome alone or as part of a recombinant expression cassette. “Transgenic” is used herein to include any cell, cell line, callus, tissue, plant part or plant, the genotype of which has been altered by the presence of heterologous nucleic acid including those transgenics initially so altered as well as those created by sexual crosses or asexual propagation from the initial transgenic. The term “transgenic” as used herein does not encompass the alteration of the genome (chromosomal or extra-chromosomal) by conventional plant breeding methods or by naturally occurring events such as random cross-fertilization, non-recombinant viral infection, non-recombinant bacterial transformation, non-recombinant transposition, or spontaneous mutation.

The term “underexpression” is used herein to mean below the normal expression level in the particular tissue, all and/or developmental or temporal stage for said enzyme/expressed protein product.

As used herein, “vector” includes reference to a nucleic acid used in introduction of a polynucleotide of the present invention into a host cell. Vectors are often replicons. Expression vectors permit transcription of a nucleic acid inserted therein.

The following terms are used to describe the sequence relationships between a polynucleotide/polypeptide of the present invention with a reference polynucleotide/polypeptide: (a) “reference sequence”, (b) “comparison window”, (c) “sequence identity”, and (d) “percentage of sequence identity”.

(a) As used herein, “reference sequence” is a defined sequence used as a basis for sequence comparison with a polynucleotide/polypeptide of the present invention. A reference sequence may be a subset or the entirety of a specified sequence; for example, as a segment of a full-length cDNA or gene sequence, or the complete cDNA or gene sequence.

(b) As used herein, “comparison window” includes reference to a contiguous and specified segment of a polynucleotide/polypeptide sequence, wherein the polynucleotide/polypeptide sequence may be compared to a reference sequence and wherein the portion of the polynucleotide/polypeptide sequence in the comparison window may comprise additions or deletions (i.e., gaps) compared to the reference sequence (which does not comprise additions or deletions) for optimal alignment of the two sequences. Generally, the comparison window is at least 20 contiguous nucleotides/amino acids residues in length, and optionally can be 30, 40, 50, 100, or longer. Those of skill in the art understand that to avoid a high similarity to a reference sequence due to inclusion of gaps in the polynucleotide/polypeptide sequence, a gap penalty is typically introduced and is subtracted from the number of matches.

Methods of alignment of sequences for comparison are well-known in the art. Optimal alignment of sequences for comparison may be conducted by the local homology algorithm of Smith and Waterman, 1981, Adv. Appl. Math. 2: 482; by the homology alignment algorithm of Needleman and Wunsch, 1970, J. Mol. Biol. 48: 443; by the search for similarity method of Pearson and Lipman, 1988, Proc. Natl. Acad. Sci. 85: 2444; by computerized implementations of these algorithms, including, but not limited to: CLUSTAL in the PC/Gene program by Intelligenetics, Mountain View, Calif.; GAP, BESTFIT, BLAST, FASTA, and TFASTA in the Wisconsin Genetics Software Package, Genetics Computer Group (GCG), 575 Science Dr., Madison, Wis., USA; the CLUSTAL program is well described by Higgins and Sharp, 1988, Gene 73: 237-244; Higgins and Sharp, 1989, CABIOS 5: 151-153; Corpet et al., 1988, Nucleic Acids Research 16: 10881-90; Huang et al., 1992, Computer Applications in the Biosciences 8: 155-65; and Pearson et al., 1994, Methods in Molecular Biology 24: 307-331.

The BLAST family of programs which can be used for database similarity searches includes: BLASTN for nucleotide query sequences against nucleotide database sequences; BLASTX for nucleotide query sequences against protein database sequences; BLASTP for protein query sequences against protein database sequences; TBLASTN for protein query sequences against nucleotide database sequences; and TBLASTX for nucleotide query sequences against nucleotide database sequences. See, Current Protocols in Molecular Biology, Chapter 19, Ausubel et al., Eds., 1995, Greene Publishing and Wiley-Interscience, New York.

Software for performing BLAST analyses is publicly available, e.g., through the National Center for Biotechnology Information (world-wide web at ncbi.nlm.nih.gov). This algorithm involves first identifying high scoring sequence pairs (HSPs) by identifying short words of length W in the query sequence, which either match or satisfy some positive-valued threshold score T when aligned with a word of the same length in a database sequence. T is referred to as the neighborhood word score threshold. These initial neighborhood word hits act as seeds for initiating searches to find longer HSPs containing them. The word hits are then extended in both directions along each sequence for as far as the cumulative alignment score can be increased. Cumulative scores are calculated using, for nucleotide sequences, the parameters M (reward score for a pair of matching residues; always >0) and N (penalty score for mismatching residues; always <0). For amino acid sequences, a scoring matrix is used to calculate the cumulative score. Extension of the word hits in each direction are halted when: the cumulative alignment score falls off by the quantity X from its maximum achieved value; the cumulative score goes to zero or below, due to the accumulation of one or more negative-scoring residue alignments; or the end of either sequence is reached. The BLAST algorithm parameters W, T, and X determine the sensitivity and speed of the alignment. The BLASTN program (for nucleotide sequences) uses as defaults a wordlength (W) of 11, an expectation (E) of 10, a cutoff of 100, M=5, N=−4, and a comparison of both strands. For amino acid sequences, the BLASTP program uses as defaults a wordlength (W) of 3, an expectation (E) of 10, and the BLOSUM62 scoring matrix (see Henikoff & Henikoff, 1989, Proc. Natl. Acad. Sci. USA 89:10915).

In addition to calculating percent sequence identity, the BLAST algorithm also performs a statistical analysis of the similarity between two sequences (see, e.g., Karlin & Altschul, 1993, Proc. Natl. Acad. Sci. USA 90:5873-5877). One measure of similarity provided by the BLAST algorithm is the smallest sum probability (P(N)), which provides an indication of the probability by which a match between two nucleotide or amino acid sequences would occur by chance.

BLAST searches assume that proteins can be modeled as random sequences. However, many real proteins comprise regions of nonrandom sequences which may be homopolymeric tracts, short-period repeats, or regions enriched in one or more amino acids. Such low-complexity regions may be aligned between unrelated proteins even though other regions of the protein are entirely dissimilar. A number of low-complexity filter programs can be employed to reduce such low-complexity alignments. For example, the SEG (Wooten and Federhen, 1993, Comput. Chem., 17:149-163) and XNU (Claverie and States, 1993, Comput. Chem., 17:191-201) low-complexity filters can be employed alone or in combination.

Unless otherwise stated, nucleotide and protein identity/similarity values provided herein are calculated using GAP (GCG Version 10) under default values.

GAP (Global Alignment Program) can also be used to compare a polynucleotide or polypeptide of the present invention with a reference sequence. GAP uses the algorithm of Needleman and Wunsch (J. Mol. Biol. 48: 443-453, 1970) to find the alignment of two complete sequences that maximizes the number of matches and minimizes the number of gaps. GAP considers all possible alignments and gap positions and creates the alignment with the largest number of matched bases and the fewest gaps. It allows for the provision of a gap creation penalty and a gap extension penalty in units of matched bases. GAP must make a profit of gap creation penalty number of matches for each gap it inserts. If a gap extension penalty greater than zero is chosen, GAP must, in addition, make a profit for each gap inserted of the length of the gap times the gap extension penalty. Default gap creation penalty values and gap extension penalty values in Version 10 of the Wisconsin Genetics Software Package for protein sequences are 8 and 2, respectively. For nucleotide sequences the default gap creation penalty is 50 while the default gap extension penalty is 3. The gap creation and gap extension penalties can be expressed as an integer selected from the group of integers consisting of from 0 to 100. Thus, for example, the gap creation and gap extension penalties can each independently be: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, 30, 40, 50, 60 or greater.

GAP presents one member of the family of best alignments. There may be many members of this family, but no other member has a better quality. GAP displays four figures of merit for alignments: Quality, Ratio, Identity, and Similarity. The Quality is the metric maximized in order to align the sequences. Ratio is the quality divided by the number of bases in the shorter segment. Percent Identity is the percent of the symbols that actually match. Percent Similarity is the percent of the symbols that are similar. Symbols that are across from gaps are ignored. A similarity is scored when the scoring matrix value for a pair of symbols is greater than or equal to 0.50, the similarity threshold. The scoring matrix used in Version 10 of the Wisconsin Genetics Software Package is BLOSUM62 (see Henikoff & Henikoff, 1989, Proc. Natl. Acad. Sci. USA 89:10915).

Multiple alignment of the sequences can be performed using the CLUSTAL method of alignment (Higgins and Sharp, 1989, CABIOS. 5:151-153) with the default parameters (GAP PENALTY=10, GAP LENGTH PENALTY=10). Default parameters for pairwise alignments using the CLUSTAL method are KTUPLE 1, GAP PENALTY=3, WINDOW=5 and DIAGONALS SAVED=5.

(c) As used herein, “sequence identity” or “identity” in the context of two nucleic acid or polypeptide sequences includes reference to the residues in the two sequences which are the same when aligned for maximum correspondence over a specified comparison window. When percentage of sequence identity is used in reference to proteins it is recognized that residue positions which are not identical often differ by conservative amino acid substitutions, where amino acid residues are substituted for other amino acid residues with similar chemical properties (e.g., charge or hydrophobicity) and therefore do not change the functional properties of the molecule. Where sequences differ in conservative substitutions, the percent sequence identity may be adjusted upwards to correct for the conservative nature of the substitution. Sequences which differ by such conservative substitutions are said to have “sequence similarity” or “similarity”. Means for making this adjustment are well-known to those of skill in the art. Typically this involves scoring a conservative substitution as a partial rather than a full mismatch, thereby increasing the percentage sequence identity. Thus, for example, where an identical amino acid is given a score of 1 and a non-conservative substitution is given a score of zero, a conservative substitution is given a score between zero and 1. The scoring of conservative substitutions is calculated, e.g., according to the algorithm of Meyers and Miller, 1988, Computer Applic. Biol. Sci., 4:11-17, e.g., as implemented in the program PC/GENE (Intelligenetics, Mountain View, Calif., USA).

Polynucleotide sequences having “substantial identity” are those sequences having at least about 50%, 60% sequence identity, generally 70% sequence identity, preferably at least 80%, more preferably at least 90%, and most preferably at least 95%, compared to a reference sequence using one of the alignment programs described above. Preferably sequence identity is determined using the default parameters determined by the program. Substantial identity of amino acid sequences generally means sequence identity of at least 50%, more preferably at least 70%, 80%, 90%, and most preferably at least 95%. Nucleotide sequences are generally substantially identical if the two molecules hybridize to each other under stringent conditions.

(d) As used herein, “percentage of sequence identity” means the value determined by comparing two optimally aligned sequences over a comparison window, wherein the portion of the polynucleotide sequence in the comparison window may comprise additions or deletions (i.e., gaps) as compared to the reference sequence (which does not comprise additions or deletions) for optimal alignment of the two sequences. The percentage is calculated by determining the number of positions at which the identical nucleic acid base or amino acid residue occurs in both sequences to yield the number of matched positions, dividing the number of matched positions by the total number of positions in the window of comparison and multiplying the result by 100 to yield the percentage of sequence identity.

As used herein, the term “transgenic,” when used in reference to a plant (i.e., a “transgenic plant”) refers to a plant that contains at least one heterologous gene in one or more of its cells.

As used herein, “substantially complementary,” in reference to nucleic acids, refers to sequences of nucleotides (which may be on the same nucleic acid molecule or on different molecules) that are sufficiently complementary to be able to interact with each other in a predictable fashion, for example, producing a generally predictable secondary structure, such as a stem-loop motif. In some cases, two sequences of nucleotides that are substantially complementary may be at least about 75% complementary to each other, and in some cases, are at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, at least about 99.5%, or 100% complementary to each other. In some cases, two molecules that are sufficiently complementary may have a maximum of 40 mismatches (e.g., where one base of the nucleic acid sequence does not have a complementary partner on the other nucleic acid sequence, for example, due to additions, deletions, substitutions, bulges, etc.), and in other cases, the two molecules may have a maximum of 30 mismatches, 20 mismatches, 10 mismatches, or 7 mismatches. In still other cases, the two sufficiently complementary nucleic acid sequences may have a maximum of 0, 1, 2, 3, 4, 5, or 6 mismatches.

By “variants” is intended substantially similar sequences. For “variant” nucleotide sequences, conservative variants include those sequences that, because of the degeneracy of the genetic code, encode the amino acid sequence of the modulator of the invention. Variant nucleotide sequences include synthetically derived sequences, such as those generated, for example, using site-directed mutagenesis. Generally, variants of a particular nucleotide sequence of the invention will have at least about 40%, 50%, 60%, 65%, 70%, generally at least about 75%, 80%, 85%, preferably at least about 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, and more preferably at least about 98%, 99% or more sequence identity to that particular nucleotide sequence as determined by sequence alignment programs described elsewhere herein using default parameters. By “variant” protein is intended a protein derived from the native protein by deletion or addition of one or more amino acids to the N-terminal and/or C-terminal end of the native protein; deletion or addition of one or more amino acids at one or more sites in the native protein; or substitution of one or more amino acids at one or more sites in the native protein. Such variants may result from, for example, genetic polymorphism or human manipulation. Conservative amino acid substitutions will generally result in variants that retain biological function

As used herein, the term “yield” or “plant yield” refers to increased plant growth, and/or increased biomass. In one embodiment, increased yield results from increased growth rate and increased root size. In another embodiment, increased yield is derived from shoot growth. In still another embodiment, increased yield is derived from fruit growth.

5. DESCRIPTION OF THE FIGURES

FIG. 1. Schematic diagram of the nitrogen assimilation pathway.

FIG. 2. Schematic diagram of the effects of transgenic overexpression or underexpression of master regulators CCA1/GLK1/bZIP1 on nitrogen assimilation, usage and storage.

FIG. 3. Network analysis of genes regulated by organic N suggests CCA1 control N-assimilation in plants. In this Cytoscape-generated network, metabolic genes are drawn as triangles (transcription factors), hexagons (metabolic genes) whereas metabolites are shown as white circles. Arrows, diamonds or lines at the end of an edge indicate directionality of the interaction. To simplify, some of the genes connecting to GLK1 and CCA1 are grouped and summarized based on their associated functions (number in parenthesis indicate the number of genes in the group).

FIG. 4. Altered mRNA levels of target genes and binding of CCA1 protein to target gene promoter regions validate predicted regulation by CCA1. FIG. 4A: RT-qPCR was performed on CCA1-ox, glk1 knockout, and wild-type plants to determine mRNA levels for ASN1, GLN1.3, and GDH1. Three biological and two technical replicates were carried out for each sample. mRNA levels were normalized to clathrin (At4g24550). The mean+/−standard error of the mean is shown. FIG. 4B: ChIP assays to show binding of CCA1 to GLN1.3, GDH1 and bZIP1 gene promoter regions. Control: input DNA control (no IP), -Ab: IP without antibody, CCA1: IP with the CCA1 antibody.

FIG. 5. Exposure of seedlings to pulses of inorganic and organic N shifts the phase of the circadian clock. FIGS. 5A-C: Plot of the phase shift of CCA1::LUC expression in response to 4-h pulse of inorganic N (20 mM KNO₃/20 mM NH₄NO₃), 10 mM Glu, or 10 mM Gln against the time at which the pulse was administered to wild-type seedlings. Pulses were administered at 3-hr intervals spanning one complete circadian cycle and data were collected over the next 6 cycles. Phase shifts are double-plotted to emphasize the circadian pattern of the response. Phase advances (the peak in expression occurring earlier) are plotted as positive values and delays are plotted as negative values. FIG. 5D shows the CCA1:LUC expression of control (untreated) seedlings. In all panels, the entraining photocycle (16:8) is indicated by the vertical white (light) and gray (dark) bars. The mean+/−standard error of the mean is shown.

FIG. 6. Proposed model of the interaction between the Arabidopsis circadian clock and N-assimilatory pathway. Arrows indicate influences that affect the function of the two processes. Black arrow: Clock function would affect N-assimilation. This influence is at least partly due to the direct regulatory role of CCA1 on N-assimilation. Grey arrow: N-assimilation would influence clock function through downstream metabolites such as Glu, Gln and possibly other N-metabolites.

FIG. 7. Signaling by inorganic vs. organic nitrogen can be distinguished by using MSX and Glu treatments. (a) Treatments include N±MSX±Glu. (b) A simplified diagram of the N-metabolic pathway from inorganic nitrate (NO₃) to organic Glu, and the block by MSX. Below this pathway are the predicted effects of the given treatments on nitrogen metabolism. Arrows indicate progression through the pathway. Line breaks, represented with a short perpendicular line, indicate the step in the pathway blocked by MSX. (c and d). The expected transcript levels for genes induced by inorganic nitrogen (c) vs. genes regulated by Glu or a Glu-derived metabolite (d).

FIG. 8. Analysis of the expression of asparagine synthetase genes. Shown is a comparison of ASN1 (a) and ASN2 (b) mRNA levels in control seedlings (transferred to 1 mM NO₃) along with MSX control (treated with NO₃ and 1 mM MSX) compared to seedlings treated with a stepwise combination of Nms, MSX, and Glu/Gln. (a) mRNA levels of ASN1 are increased in Nms, are sensitive to MSX treatment, and can be recovered with exogenous application of Glu or Gln. (b) mRNA levels of ASN2 are increased in Nms. However, this expression is insensitive to MSX treatment and is slightly repressed with exogenous application of Glu or Gln. mRNA levels were normalized to EIF4A (At3g13920).

FIG. 9. RT-qPCR confirmation of the regulation for two transcription factors TAZ and bZIP1. Shown is confirmation of TAZ (FIG. 9A) and bZIP1 (FIG. 9B) mRNA levels in control seedlings along with the MSX control and compared to seedlings treated with a stepwise combination of Nms, Nms+MSX, and Nms+MSX+Glu (or Gln). In both cases, although increased expression in the presence of N is blocked in the presence of MSX, this suppression can be overcome by exogenous application of Glu or Gln. Plants transferred to control media do not show mRNA levels different from treatments without MSX. Primers used for RT-qPCR are as follows: TAZ forward, 5′-TCCTCGTCTCGGTCTT-3′ (SEQ ID NO:1); reverse, 5′-CAACCACCAGGGATTC-3′ (SEQ ID NO:2); bZIP forward, 5′-TCAGGTTCCGACATAGATG-3′ (SEQ ID NO:3); reverse, 5′-CCACGGTGTACGTCTACA-3′ (SEQ ID NO:4).

FIG. 10. Analysis of the expression of bZIP1 in the CCA1-ox. To test some of the predictions of our network CCA1-ox and Col-0 plants were collected 3 h after dawn; three biological replicates were taken at each time point. RNA was extracted from whole seedlings (as described in Materials and Methods), and RT-qPCR was performed to measure mRNA levels for bZIP1 (At5g49450). Two technical replicates were carried out for each sample. mRNA levels were normalized to clathrin (At4g24550).

FIG. 11. Circadian regulation of the response of clock gene (CCA1) expression to N-assimilation inhibitors and inorganic and organic N. Mean±SEM luciferase activity of CCA1::LUC in response to exogenous inorganic N, Glu, or Gln is presented. Seedlings were entrained for 8 days in a 16-h white light/8-h dark photoperiod on MS medium containing 1 mM KNO₃ before being transferred to continuous light and exposed for 4-h pulses of inorganic N (20 mM KNO₃/20 mM NH₄NO₃), 10 mM Glu, or 10 mM Gln presented at 3-h intervals over one circadian cycle before return to MS medium containing 1 mM KNO₃ in continuous light for luciferase measurements for 6 days. Luciferase activity values were normalized by the mean expression value for the treatment. The entraining photocycle is indicated by the vertical white (light) and gray (dark) bars.

FIG. 12. Schematic diagram of how CCA1/GLK1/bZIP1 transcription factors coordinate the nitrogen regulation of genes in the nitrogen assimilation pathway.

6. DETAILED DESCRIPTION

Master control genes (CCA1, GLK1, and bZIP11) that control N-assimilation in response to Glu sensing have been identified in the present invention. As these genes are transcription factor hubs, they coordinate the N-regulation of the N-assimilatory gene network, with genome-wide responses associated with growth and development in plants. Thus, effecting genome-wide changes in N-assimilation, plant growth and development, by the transgenic manipulation of these master control genes in plants effects nitrogen use efficiency in vegetative tissues (leaves & roots) and also in seed. Changes in levels of N-assimilated into Gln effect changes in growth of vegetative tissues, while changes in levels of Asn affect seed development.

Thus, the present invention relates to the transgenic manipulation of these N-responsive master regulatory genes (CCA1, GLK1, and bZIP11) that control N-assimilation, and other related processes in response to N treatments, so as to increase the overall N-assimilation capacity, whether for increased N usage or N storage. The overexpression of these master control genes (e.g., uncoupled from Glu repression) effectively releases N-assimilation from the feedback repression loop by Glu-leading to increased N-assimilation and usage. As these regulatory genes serve to respond to Glu levels by reciprocally regulating the amount of N-assimilated into Gln versus the amount of Gln metabolized to Asn (for N-storage and transport), the manipulation of these genes in transgenic plants can be used to optimize N-assimilation into Gln versus Asn (FIG. 6). Increased N-assimilation is advantageous in all crops. Additionally, in seed crops, the increased synthesis of Asn increases N-transported and stored in seed.

Thus, in one embodiment, the present invention is directed to a method for improving nitrogen assimilation and usage in a plant in which more nitrogen is available for biosynthesis, said method comprising overexpressing GLK1 in the plant. In another embodiment, the present invention is directed to a method for improving nitrogen assimilation and usage in a plant in which more nitrogen is available for biosynthesis, said method comprising overexpressing CCA1 in the plant. In yet another embodiment, the present invention is directed to a method for improving nitrogen assimilation and usage in a plant in which more nitrogen is available for biosynthesis, said method comprising underexpressing bZIP1 in the plant.

In another embodiment, the method for improving nitrogen assimilation and usage in a plant in which more nitrogen is available for biosynthesis comprises overexpressing CCA1 and GLK1 in the plant. In another embodiment, the method for improving nitrogen assimilation and usage in a plant in which more nitrogen is available for biosynthesis comprises overexpressing CCA1 and underexpressing bZIP1 in the plant, or overexpressing GLK1 and underexpressing bZIP1 in the plant. In yet another embodiment, the method for improving nitrogen assimilation and usage in a plant in which more nitrogen is available for biosynthesis comprises overexpressing CCA1, overexpressing GLK1 and underexpressing bZIP1 in the plant.

The present invention is also directed to methods for altering nitrogen assimilation and storage, e.g., increasing nitrogen storage, in a plant. In one embodiment, the method comprises overexpressing bZIP1 in the plant. In another embodiment, the method comprises underexpressing CCA1 in the plant and/or underexpressing GLK1 in the plant. In another embodiment, the method overexpressing bZIP1 and underexpressing CCA1 and/or GLK1 in the plant. In yet another embodiment, the method comprises overexpressing bZIP1, and underexpressing CCA1 and underexpressing GLK1 in the plant.

In certain embodiments, the plant is species of woody, ornamental, decorative, crop, cereal, fruit, or vegetable. In other embodiments, the plant is a species of one of the following genuses: Acorus, Aegilops, Allium, Amborella, Antirrhinum, Apium, Arabidopsis, Arachis, Beta, Betula, Brassica, Capsicum, Ceratopteris, Citrus, Cryptomeria, Cycas, Descurainia, Eschscholzia, Eucalyptus, Glycine, Gossypium, Hedyotis, Helianthus, Hordeum, Ipomoea, Lactuca, Linum, Liriodendron, Lotus, Lupinus, Lycopersicon, Medicago, Mesembryanthemum, Nicotiana, Nuphar, Pennisetum, Persea, Phaseolus, Physcomitrella, Picea, Pinus, Poncirus, Populus, Prunus, Robinia, Rosa, Saccharum, Schedonorus, Secale, Sesamum, Solanum, Sorghum, Stevia, Thellungiella, Theobroma, Triphysaria, Triticum, Vitis, Zea, or Zinnia.

The overexpression of a particular gene can be accomplished by any method known in the art, for example, by transforming a plant cell with a nucleic acid vector comprising the coding sequences of the desired gene operably linked to a promoter active in a plant cell such that the desired gene is expressed at levels higher than normal, i.e., levels found in a control/nontransgenic plant. Such promoters can be constitutively active in all or some plant tissues or can be inducible.

The underexpression of a desired gene can be accomplished by any method known in the art, such as knocking out the gene or mutating the gene transgenically such that lower than normal levels of the gene product is produced in the transgenic cells or plant. For example, such mutations include frame-shift mutations or mutations resulting in a stop codon in the wild-type coding sequence, thus preventing expression of the gene product. Another exemplary mutation would be the removal of the transcribed sequences from the plant genome, for example, by homologous recombination. Another method for underexpressing a gene is transgenically introducing an insertion or deletion into the transcribed sequence or an insertion or deletion upstream or downstream of the transcribed sequence such that expression of the gene product is decreased as compared to wild-type or appropriate control. Additionally, microRNA (native or artificial) can be used to target a particular encoding mRNA for degradation, thus reducing the level of the expressed gene product in the transgenic plant cell.

The present invention is also directed to a transgenic plant produced by any of the foregoing methods.

The present invention is also directed to compositions for modulating gene expression in plants. The compositions comprise constructs for the expression of CCA1, GLK1 or bZIP1. In certain embodiments, a construct of the invention comprises a promoter, such as a tissue specific promoter, which is expressed in a plant cell, such as a leaf cell, and promotes the expression of CCA1, GLK1 or bZIP1.

Any of a variety of promoters can be utilized in the constructs of the invention depending on the desired outcome. Tissue-specific or tissue-preferred promoters, inducible promoters, developmental promoters, constitutive promoters and/or chimeric promoters can be used to direct expression of the gene product in specific cells or organs the plant, when fused to the appropriate cell or organ specific promoter.

Chimeric constructs expressing CCA1, GLK1 or bZIP1 in transgenic plants (using constitutive or inducible promoters) can be used in the compositions and methods provided herein to enhance nitrogen assimilation and usage or increase nitrogen storage.

The present invention is also directed to a transgenic plant-derived commercial product. In one embodiment, the transgenic plant is a tree, and said commercial product is pulp, paper, a paper product, or lumber. In another embodiment, the transgenic plant is tobacco, and said commercial product is a cigarette, cigar, or chewing tobacco. In yet another embodiment, the transgenic plant is a crop, and said commercial product is a fruit or vegetable. In yet another embodiment, the transgenic plant is a grain, and said commercial product is bread, flour, cereal, oat meal, or rice. In another embodiment, the product is a biofuel or a plant oil.

6.1 Master Regulators

CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene encodes a MYB-related transcription factor involved in the phytochrome induction of a light-harvesting chlorophyll a/b-protein gene. The nucleotide and amino acid sequences of CCA1 from Arabidopsis are known, see Accession No. At2g46830. Further, orthologous CCA1 genes from other organisms are also known. For example, the CCA1 gene sequences from poplar can be found under Accession Nos. Poptr1#552368 or Poptr1#731468. The use of CCA1 in the present invention refers not only to the Arabidopsis gene but also the orthologous CCA1 gene from other species. Thus, in one embodiment, plant species-specific CCA1 genes can be used in plants of the same species, e.g., tobacco CCA1 can be overexpressed in tobacco. Additionally, such orthologous sequences can be identified and isolated using methods known in the art, such as hybridization methods and then testing the isolated sequences for CCA1 activity, as demonstrated infra. Other methods, such as alignment methods described supra can also be used to identify and isolate orthologous CCA1 sequences.

Golden 2-like genes (GLK) are members of the GARP superfamily of transcription factors. GLK genes are known to be involved in the regulation of chloroplast development in diverse plant species (Fritter et al., 2002, The Plant Journal 31:713-727). The nucleotide and amino acid sequences of GLK1 from Arabidopsis are known, see Accession No. At2g20570. Further, orthologous GLK1 genes from other organisms are also known. For example, the GLK1 gene sequences from poplar and rice can be found under Accession Nos. Poptr1#654401 and Os06g24070, respectively. The use of GLK1 in the present invention refers not only to the Arabidopsis gene but also the orthologous GLK1 gene from other species. Thus, in one embodiment, plant species-specific GLK1 genes can be used in plants of the same species, e.g., tobacco GLK1 can be overexpressed in tobacco. Additionally, such orthologous sequences can be identified and isolated using methods known in the art, such as hybridization methods and then testing the isolated sequences for GLK1 activity, such as DNA binding activity. Other methods, such as alignment methods described supra can also be used to identify and isolate orthologous GLK1 sequences.

bZIP1 is a transcription factor that belongs to the largest bZIP group in Arabadopsis, Group S (Jakoby et al., 2002, Trends Plant Sci 7:106-111). It is thought that Group S bZIP genes are involved in balancing carbohydrate demand and supply (Rook et al., 1998, Plant J 15:253-263). The nucleotide and amino acid sequences of bZIP1 from Arabidopsis are known, see Accession No. At5g49450. The use of bZIP1 in the present invention refers not only to the Arabidopsis gene but also the orthologous bZIP1 gene from other species. Thus, in one embodiment, plant species-specific bZIP1 genes can be used in plants of the same species, e.g., tobacco bZIP1 can be overexpressed in tobacco. Additionally, such orthologous sequences can be identified and isolated using methods known in the art, such as hybridization methods and then testing the isolated sequences for bZIP1 activity, such as DNA binding activity. Other methods, such as alignment methods described supra can also be used to identify and isolate orthologous bZIP1 sequences.

6.2 Modulation of Gene Expression

The methods of the invention involve modulation of the expression of one, two, three or more target nucleotide sequences in a plant, optionally in specific tissues such as vegetative tissues or leaves or seeds. That is, the expression of a target nucleotide sequence of interest may be increased or decreased. In specific embodiments, the target nucleotide sequences are CCA1, GLK1 or bZIP1, which can be increased or decreased.

The target nucleotide sequences may be endogenous or exogenous in origin. By “modulate expression of a target gene” is intended that the expression of the target gene is increased or decreased relative to the expression level in a plant that has not been altered by the methods described herein.

By “increased or over expression” is intended that expression of the target nucleotide sequence is increased over expression observed in conventional transgenic lines for heterologous genes and over endogenous levels of expression for homologous genes. Heterologous or exogenous genes comprise genes that do not occur in the plant of interest in its native state. Homologous or endogenous genes are those that are natively present in the plant genome. Generally, expression of the target sequence is substantially increased. That is expression is increased at least about 25%-50%, preferably about 50%-100%, more preferably about 100%, 200% and greater.

By “decreased expression” or “underexpression” it is intended that expression of the target nucleotide sequence is decreased below expression observed in conventional transgenic lines for heterologous genes and below endogenous levels of expression for homologous genes. Generally, expression of the target nucleotide sequence of interest is substantially decreased. That is expression is decreased at least about 25%-50%, preferably about 50%-100%, more preferably about 100%, 200% and greater.

Expression levels may be assessed by determining the level of a gene product by any method known in the art including, but not limited to determining the levels of the RNA and protein encoded by a particular target gene. For genes that encode proteins, expression levels may determined, for example, by quantifying the amount of the protein present in plant cells, or in a plant or any portion thereof. Alternatively, it desired target gene encodes a protein that has a known measurable activity, then activity levels may be measured to assess expression levels.

6.3 Transformation/Transfection

Any method or delivery system may be used for the delivery and/or transfection of the nucleic acid vectors encoding any of the master regulators of the present invention in the cell. The vectors may be delivered to the plant cell either alone, or in combination with other agents.

Transfection may be accomplished by a wide variety of means, as is known to those of ordinary skill in the art. Such methods include, but are not limited to, Agrobacterium-mediated transformation (e.g., Komari et al., 1998, Curr. Opin. Plant Biol., 1:161), particle bombardment mediated transformation (e.g., Finer et al., 1999, Curr. Top. Microbiol. Immunol., 240:59), protoplast electroporation (e.g., Bates, 1999, Methods Mol. Biol., 111:359), viral infection (e.g., Porta and Lomonossoff, 1996, Mol. Biotechnol. 5:209), microinjection, and liposome injection. Other exemplary delivery systems that can be used to facilitate uptake by a cell of the nucleic acid include calcium phosphate and other chemical mediators of intracellular transport, microinjection compositions, and homologous recombination compositions (e.g., for integrating a gene into a preselected location within the chromosome of the cell). Alternative methods may involve, for example, the use of liposomes, electroporation, or chemicals that increase free (or “naked”) DNA uptake, transformation using viruses or pollen and the use of microprojection. Standard molecular biology techniques are common in the art (e.g., Sambrook et al., 1989, Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory Press, New York). For example, in one embodiment of the present invention, Arabidopsis or another plant species is transformed with a gene encoding CCA1, GLK1 or bZIP1 using Agrobacterium.

One of skill in the art will be able to select an appropriate vector for introducing the encoding nucleic acid sequence in a relatively intact state. Thus, any vector which will produce a plant carrying the introduced encoding nucleic acid should be sufficient. The selection of the vector, or whether to use a vector, is typically guided by the method of transformation selected.

The transformation of plants in accordance with the invention may be carried out in essentially any of the various ways known to those skilled in the art of plant molecular biology. (See, for example, Methods of Enzymology, Vol. 153, 1987, Wu and Grossman, Eds., Academic Press, incorporated herein by reference).

Plant cells and plants can comprise two or more nucleotide sequence constructs. Any means for producing a plant comprising the nucleotide sequence constructs described herein are encompassed by the present invention. For example, a nucleotide sequence encoding the modulator can be used to transform a plant at the same time as the nucleotide sequence encoding the precursor RNA. The nucleotide sequence encoding the precursor mRNA can be introduced into a plant that has already been transformed with the modulator nucleotide sequence. Alternatively, transformed plants, one expressing the modulator and one expressing the RNA precursor, can be crossed to bring the genes together in the same plant. Likewise, viral vectors may be used to express gene products by various methods generally known in the art. Suitable plant viral vectors for expressing genes should be self-replicating, capable of systemic infection in a host, and stable. Additionally, the viruses should be capable of containing the nucleic acid sequences that are foreign to the native virus forming the vector. Transient expression systems may also be used.

Agrobacterium transformation is widely used by those skilled in the art to transform dicotyledonous species. Recently, there has been substantial progress towards the routine production of stable, fertile transgenic plants in almost all economically relevant monocot plants (Toriyarna et al., 1988, Bio/Technology 6:1072-1074; Zhang et al., 1988, Plant Cell Rep. 7:379-384; Zhang et al., 1988, Theor. Appl. Genet. 76:835-840; Shimamoto et al., 1989, Nature 338:274-276; Datta et al., 1990, Bio/Technology 8: 736-740; Christou et al., 1991, Bio/Technology 9:957-962; Peng et al., 1991, International Rice Research Institute, Manila, Philippines, pp. 563-574; Cao et al., 1992, Plant Cell Rep. 11:585-591; Li et al., 1993, Plant Cell Rep. 12:250-255; Rathore et al., 1993, Plant Mol. Biol. 21:871-884; Fromm et al., 1990, Bio/Technology 8:833-839; Tomes et al., 1995, “Direct DNA Transfer into Intact Plant Cells via Microprojectile Bombardment,” in Plant Cell, Tissue, and Organ Culture: Fundamental Methods, ed. Gamborg and Phillips (Springer-Verlag, Berlin); D'Halluin et al., 1992, Plant Cell 4:1495-1505; Walters et al., 1992, Plant Mol. Biol. 18:189-200; Koziel et al., 1993, Biotechnology 11: 194-200; Vasil, I. K., 1994, Plant Mol. Biol. 25:925-937; Weeks et al., 1993, Plant Physiol. 102:1077-1084; Somers et al., 1992, Bio/Technology 10: 1589-1594; WO 92/14828). In particular, Agrobacterium mediated transformation is now emerging also as an highly efficient transformation method in monocots (Hiei et al., 1994, The Plant Journal 6:271-282). See also, Shimamoto, K., 1994, Current Opinion in Biotechnology 5:158-162; Vasil et al., 1992, Bio/Technology 10:667-674; Vain et al., 1995, Biotechnology Advances 13(4):653-671; Vasil et al., 1996, Nature Biotechnology 14:702).

The particular choice of a transformation technology will be determined by its efficiency to transform certain plant species as well as the experience and preference of the person practicing the invention with a particular methodology of choice. It will be apparent to the skilled person that the particular choice of a transformation system to introduce nucleic acid into plant cells is not essential to or a limitation of the invention, nor is the choice of technique for plant regeneration.

6.3.1 Agrobacterium

A CCA1, GLK1 or bZIP1-encoding nucleic acid sequences or a nucleic acid designed to disrupt expression of CCA1, GLK1 or bZIP1 utilized in the present invention can be introduced into plant cells using Ti plasmids of Agrobacterium tumefaciens (A. tumefaciens), root-inducing (Ri) plasmids of Agrobacterium rhizogenes (A. rhizogenes), and plant virus vectors. For reviews of such techniques see, for example, Weissbach & Weissbach, 1988, Methods for Plant Molecular Biology, Academic Press, NY, Section VIII, pp. 421-463; and Grierson & Corey, 1988, Plant Molecular Biology, 2d Ed., Blackie, London, Ch. 7-9, and Horsch et al., 1985, Science, 227:1229.

In using an A. tumefaciens culture as a transformation vehicle, it is most advantageous to use a non-oncogenic strain of Agrobacterium as the vector carrier so that normal non-oncogenic differentiation of the transformed tissues is possible. It is also preferred that the Agrobacterium harbor a binary Ti plasmid system. Such a binary system comprises 1) a first Ti plasmid having a virulence region essential for the introduction of transfer DNA (T-DNA) into plants, and 2) a chimeric plasmid. The chimeric plasmid contains at least one border region of the T-DNA region of a wild-type Ti plasmid flanking the nucleic acid to be transferred. Binary Ti plasmid systems have been shown effective in the transformation of plant cells (De Framond, Biotechnology, 1983, 1:262; Hoekema et al., 1983, Nature, 303:179). Such a binary system is preferred because it does not require integration into the Ti plasmid of A. tumefaciens, which is an older methodology.

In some embodiments, a disarmed Ti-plasmid vector carried by Agrobacterium exploits its natural gene transferability (EP-A-270355, EP-A-01 16718, Townsend et al., 1984, NAR, 12:8711, U.S. Pat. No. 5,563,055).

Methods involving the use of Agrobacterium in transformation according to the present invention include, but are not limited to: 1) co-cultivation of Agrobacterium with cultured isolated protoplasts; 2) transformation of plant cells or tissues with Agrobacterium; or 3) transformation of seeds, apices or meristems with Agrobacterium.

In addition, gene transfer can be accomplished by in planta transformation by Agrobacterium, as described by Bechtold et al., (C. R. Acad. Sci. Paris, 1993, 316:1194). This approach is based on the vacuum infiltration of a suspension of Agrobacterium cells.

In certain embodiments, a CCA1, GLK1, bZIP1-encoding nucleic acid or mutant thereof is introduced into plant cells by infecting such plant cells, an explant, a meristem or a seed, with transformed A. tumefaciens as described above. Under appropriate conditions known in the art, the transformed plant cells are grown to form shoots, roots, and develop further into plants.

Other methods described herein, such as microprojectile bombardment, electroporation and direct DNA uptake can be used where Agrobacterium is inefficient or ineffective. Alternatively, a combination of different techniques may be employed to enhance the efficiency of the transformation process, e.g., bombardment with Agrobacterium-coated microparticles (EP-A-486234) or microprojectile bombardment to induce wounding followed by co-cultivation with Agrobacterium (EP-A-486233).

6.3.2 CaMV

In some embodiments, cauliflower mosaic virus (CaMV) is used as a vector for introducing a desired nucleic acid into plant cells (U.S. Pat. No. 4,407,956). CaMV viral DNA genome can be inserted into a parent bacterial plasmid creating a recombinant DNA molecule which can be propagated in bacteria. After cloning, the recombinant plasmid again can be cloned and further modified by introduction of the desired nucleic acid sequence. The modified viral portion of the recombinant plasmid can then be excised from the parent bacterial plasmid, and used to inoculate the plant cells or plants.

6.3.3 Mechanical and Chemical Means

In some embodiments, a CCA1, GLK1 or bZIP1-encoding nucleic acid or a nucleic acid designed to disrupt expression of CCA1, GLK1 or bZIP1 is introduced into a plant cell using mechanical or chemical means. Exemplary mechanical and chemical means are provided below.

As used herein, the term “contacting” refers to any means of introducing a CCA1, GLK1 or bZIP1-encoding nucleic acid or a nucleic acid designed to disrupt expression of CCA1, GLK1 or bZIP1 into a plant cell, including chemical and physical means as described above. Preferably, contacting refers to introducing the nucleic acid or vector containing the nucleic acid into plant cells (including an explant, a meristem or a seed), via A. tumefaciens transformed with the, e.g., GLK1-encoding nucleic acid as described above.

6.3.3.1 Microinjection

In one embodiment, the CCA1, GLK1 or bZIP1-encoding nucleic acid or the nucleic acid designed to disrupt expression of CCA1, GLK1 or bZIP1 can be mechanically transferred into the plant cell by microinjection using a micropipette. See, e.g., WO 92/09696, WO 94/00583, EP 331083, EP 175966, Green et al., 1987, Plant Tissue and Cell Culture, Academic Press, Crossway et al., 1986, Biotechniques 4:320-334.

6.3.3.2 PEG

In other embodiment, the nucleic acid can also be transferred into the plant cell by using polyethylene glycol (PEG) which forms a precipitation complex with genetic material that is taken up by the cell.

6.3.3.3 Electroporation

Electroporation can be used, in another set of embodiments, to deliver a nucleic acid to the cell, e.g., precursor miRNA, or a nucleotide sequence able to be transcribed to produce CCA1, GLK1 or bZIP1 protein (see, e.g., Fromm et al., 1985, PNA5, 82:5824). “Electroporation,” as used herein, is the application of electricity to a cell, such as a plant protoplast, in such a way as to cause delivery of a nucleic acid into the cell without killing the cell. Typically, electroporation includes the application of one or more electrical voltage “pulses” having relatively short durations (usually less than 1 second, and often on the scale of milliseconds or microseconds) to a media containing the cells. The electrical pulses typically facilitate the non-lethal transport of extracellular nucleic acids into the cells. The exact electroporation protocols (such as the number of pulses, duration of pulses, pulse waveforms, etc.), will depend on factors such as the cell type, the cell media, the number of cells, the substance(s) to be delivered, etc., and can be determined by those of ordinary skill in the art. Electroporation is discussed in greater detail in, e.g., EP 290395, WO 8706614, Riggs et al., 1986, Proc. Natl. Acad. Sci. USA 83:5602-5606; D'Halluin et al., 1992, Plant Cell 4:1495-1505). Other forms of direct DNA uptake can also be used in the methods provided herein, such as those discussed in, e.g., DE 4005152, WO 9012096, U.S. Pat. No. 4,684,611, Paszkowski et al., 1984, EMBO J. 3:2717-2722.

6.3.3.4 Ballistic and Particle Bombardment

Another method for introducing a CCA1, GLK1 or bZIP1-encoding nucleic acid or a nucleic acid designed to disrupt expression of CCA1, GLK1 or bZIP1 into a plant cell is high velocity ballistic penetration by small particles with the nucleic acid to be introduced contained either within the matrix of such particles, or on the surface thereof (Klein et al., 1987, Nature 327:70). Genetic material can be introduced into a cell using particle gun (“gene gun”) technology, also called microprojectile or microparticle bombardment. In this method, small, high-density particles (microprojectiles) are accelerated to high velocity in conjunction with a larger, powder-fired macroprojectile in a particle gun apparatus. The microprojectiles have sufficient momentum to penetrate cell walls and membranes, and can carry RNA or other nucleic acids into the interiors of bombarded cells. It has been demonstrated that such microprojectiles can enter cells without causing death of the cells, and that they can effectively deliver foreign genetic material into intact tissue. Bombardment transformation methods are also described in Sanford et al. (Techniques 3:3-16, 1991) and Klein et al. (Bio/Techniques 10:286, 1992). Although, typically only a single introduction of a new nucleic acid sequence(s) is required, this method particularly provides for multiple introductions.

Particle or microprojectile bombardment are discussed in greater detail in, e.g., the following references: U.S. Pat. No. 5,100,792, EP-A-444882, EP-A-434616; Sanford et al., U.S. Pat. No. 4,945,050; Tomes et al., 1995, “Direct DNA Transfer into Intact Plant Cells via Microprojectile Bombardment,” in Plant Cell, Tissue, and Organ Culture: Fundamental Methods, ed. Gamborg and Phillips (Springer-Verlag, Berlin); and McCabe et al., 1988, Biotechnology 6:923-926.

6.3.3.5 Colloidal Dispersion

In other embodiments, a colloidal dispersion system may be used to facilitate delivery of a nucleic acid into the cell, for example, GLK1, or a nucleotide sequence able to disrupt expression of GLK1. As used herein, a “colloidal dispersion system” refers to a natural or synthetic molecule, other than those derived from bacteriological or viral sources, capable of delivering to and releasing the nucleic acid to the cell. Colloidal dispersion systems include, but are not limited to, macromolecular complexes, beads, and lipid-based systems including oil-in-water emulsions, micelles, mixed micelles, and liposomes. One example of a colloidal dispersion system is a liposome. Liposomes are artificial membrane vessels. It has been shown that large unilamellar vessels (“LUV”), which-range in size from 0.2 to 4.0 microns, can encapsulate large macromolecules within the aqueous interior and these macromolecules can be delivered to cells in a biologically active form (e.g., Fraley et al., 1981, Trends Biochem. Sci., 6:77).

6.3.3.6 Lipids

Lipid formulations for the transfection and/or intracellular delivery of nucleic acids are commercially available, for instance, from QIAGEN, for example as EFFECTENE® (a non-liposomal lipid with a special DNA condensing enhancer) and SUPER-FECT® (a novel acting dendrimeric technology) as well as Gibco BRL, for example, as LIPOFECTIN® and LIPOFECTACE®, which are formed of cationic lipids such as N-[1-(2,3-dioleyloxy)-propyl]-N,N,N-trimethylammonium chloride (“DOTMA”) and dimethyl dioctadecylammonium bromide (“DDAB”). Liposomes are well known in the art and have been widely described in the literature, for example, in Gregoriadis, G., 1985, Trends in Biotechnology 3:235-241; Freeman et al., 1984, Plant Cell Physiol. 29:1353).

6.3.3.7 Other Methods

In addition to the above, other physical methods for the transformation of plant cells are reviewed in the following and can be used in the methods provided herein. Oard, 1991, Biotech. Adv. 9:1-11. See generally, Weissinger et al., 1988, sAnn. Rev. Genet. 22:421-477; Sanford et al., 1987, Particulate Science and Technology 5:27-37; Christou et al., 1988, Plant Physiol. 87:671-674; McCabe et al., 1988, Bio/Technology 6:923-926; Finer and McMullen, 1991, In vitro Cell Dev. Biol. 27P:175-182; Singh et al., 1998, Theor. Appl. Genet. 96:319-324; Datta et al., 1990, Biotechnology 8:736-740; Klein et al., 1988, Proc. Natl. Acad. Sci. USA 85:4305-4309; Klein et al., 1988, Biotechnology 6:559-563; Tomes, U.S. Pat. No. 5,240,855; Buising et al., U.S. Pat. Nos. 5,322,783 and 5,324,646; Klein et al., 1988, Plant Physiol. 91:440-444; Fromm et al., 1990, Biotechnology 8:833-839; Hooykaas-Van Slogteren et al., 1984, Nature (London) 311:763-764; Bytebier et al., 1987, Proc. Natl. Acad. Sci. USA 84:5345-5349; De Wet et al., 1985, The Experimental Manipulation of Ovule Tissues, ed. Chapman et al. (Longman, N.Y.), pp. 197-209; Kaeppler et al., 1990, Plant Cell Reports 9:415-418 and Kaeppler et al., 1992, Theor. Appl. Genet. 84:560-566; Li et al., 1993, Plant Cell Reports 12:250-255 and Christou and Ford, 1995, Annals of Botany 75:407-413; Osjoda et al., 1996, Nature Biotechnology 14:745-750; all of which are herein incorporated by reference.

6.4 Nucleic Acid Constructs

The CCA1, GLK1, bZIP1 sequences of the invention may be provided in nucleotide sequence constructs or expression cassettes for expression in the plant of interest. The cassette will include 5′ and 3′ regulatory sequences operably linked to an encoding nucleotide sequence of the invention.

The expression cassette may additionally contain at least one additional gene to be co-transformed into the organism. Alternatively, the additional gene(s) can be provided on multiple expression cassettes.

In certain embodiments, an expression cassette can be used with a plurality of restriction sites for insertion of the sequences of the invention to be under the transcriptional regulation of the regulatory regions. The expression cassette can additionally contain selectable marker genes (see below).

The expression cassette will generally include in the 5′-3′ direction of transcription, a transcriptional and translational initiation region, a DNA sequence of the invention, e.g., GLK1 or a sequence designed to disrupt expression of GLK1, and a transcriptional and translational termination region functional in plants. The transcriptional initiation region, the promoter, may be native or analogous or foreign or heterologous to the plant host. Additionally, the promoter may be the natural sequence or alternatively a synthetic sequence. By “foreign” is intended that the transcriptional initiation region is not found in the native plant into which the transcriptional initiation region is introduced. As used herein, a chimeric gene comprises a coding sequence operably linked to a transcription initiation region that is heterologous to the coding sequence.

The termination region may be native with the transcriptional initiation region, may be native with the operably linked DNA sequence of interest, or may be derived from another source. Convenient termination regions are available from the Ti-plasmid of A. tumefaciens, such as the octopine synthase and nopaline synthase termination regions. See also Guerineau et al., 1991, Mol. Gen. Genet. 262:141-144; Proudfoot, 1991, Cell 64:671-674; Sanfacon et al., 1991, Genes Dev. 5:141-149; Mogen et al., 1990, Plant Cell 2:1261-1272; Munroe et al., 1990, Gene 91:151-158; Ballas et al., 1989, Nucleic Acids Res. 17:7891-7903; and Joshi et al., 1987, Nucleic Acid Res. 15:9627-9639.

In some embodiments, a nucleic acid (e.g., encoding GLK1 or bZIP1) can be delivered to the cell in a vector. As used herein, a “vector” is any vehicle capable of facilitating the transfer of the nucleic acid to the cell such that the nucleic acid can be processed and/or expressed in the cell. The vector may transport the nucleic acid to the cells with reduced degradation, relative to the extent of degradation that would result in the absence of the vector. The vector optionally includes gene expression sequences or other components (such as promoters and other regulatory elements) able to enhance expression of the nucleic acid within the cell. The invention also encompasses the cells transfected with these vectors, including those cells previously described. In certain embodiments, the cells are transfected or transformed with a vector that specifically (or preferably) overexpresses CCA1 and/or GLK1 in the vegetative tissues of the plant, but not in the majority of other cell types of the plant.

To commence a transformation process in certain embodiments, it is first necessary to construct a suitable vector and properly introduce it into the plant cell. Vector(s) employed in the present invention for transformation of a plant cell include an encoding nucleic acid sequence operably associated with a promoter, such as a leaf-specific promoter. Details of the construction of vectors utilized herein are known to those skilled in the art of plant genetic engineering.

In general, vectors useful in the invention include, but are not limited to, plasmids, phagemids, viruses, other vehicles derived from viral or bacterial sources that have been manipulated by the insertion or incorporation of the nucleotide sequences (or precursor nucleotide sequences) of the invention. Viral vectors useful in certain embodiments include, but are not limited to, nucleic acid sequences from the following viruses: retroviruses; adenovirus, or other adeno-associated viruses; mosaic viruses such as tobamoviruses; potyviruses, nepoviruses, and RNA viruses such as retroviruses. One can readily employ other vectors not named but known to the art. Some viral vectors can be based on non-cytopathic eukaryotic viruses in which non-essential genes have been replaced with the nucleotide sequence of interest. Non-cytopathic viruses include retroviruses, the life cycle of which involves reverse transcription of genomic viral RNA into DNA with subsequent proviral integration into host cellular DNA.

Genetically altered retroviral expression vectors can have general utility for the high-efficiency transduction of nucleic acids. Standard protocols for producing replication-deficient retroviruses (including the steps of incorporation of exogenous genetic material into a plasmid, transfection of a packaging cell lined with plasmid, production of recombinant retroviruses by the packaging cell line, collection of viral particles from tissue culture media, and infection of the cells with viral particles) are well known to those of ordinary skill in the art. Examples of standard protocols can be found in Kriegler, M., 1990, Gene Transfer and Expression, A Laboratory Manual, W.H. Freeman Co., New York, or Murry, E. J. Ed., 1991, Methods in Molecular Biology, Vol. 7, Humana Press, Inc., Cliffton, N.J.

Another-example of a virus for certain applications is the adeno-associated virus, which is a double-stranded DNA virus. The adeno-associated virus can be engineered to be replication-deficient and is capable of infecting a wide range of-cell types and species. The adeno-associated virus further has advantages, such as heat and lipid solvent stability; high transduction frequencies in cells of diverse lineages; and/or lack of superinfection inhibition, which may allow multiple series of transductions.

Another vector suitable for use with the method provided herein is a plasmid vector. Plasmid vectors, have been extensively described in the art and are well-known to those of skill in the art. See, e.g., Sambrook et al., 1989, Molecular Cloning: A Laboratory Manual, Second Edition, Cold Spring Harbor Laboratory Press. These plasmids may have a promoter compatible with the host cell, and the plasmids can express a peptide from a gene operatively encoded within the plasmid. Some commonly used plasmids include pBR322, pUC18, pUC19, pRC/CMV, SV40, and pBlueScript. Other plasmids are well-known to those of ordinary skill in the art. Additionally, plasmids may be custom-designed, for example, using restriction enzymes and ligation reactions, to remove and add specific fragments of DNA or other nucleic acids, as necessary. The present invention also includes vectors for producing nucleic acids or precursor nucleic acids containing a desired nucleotide sequence (which can, for instance, then be cleaved or otherwise processed within the cell to produce a precursor miRNA). These vectors may include a sequence encoding a nucleic acid and an in vivo expression element, as further described below. In some cases, the in vivo expression element includes at least one promoter.

Where appropriate, the gene(s) for enhanced expression may be optimized for expression in the transformed plant. That is, the genes can be synthesized using plant-preferred codons corresponding to the plant of interest. Methods are available in the art for synthesizing plant-preferred genes. See, for example, U.S. Pat. Nos. 5,380,831, and 5,436,391, and Murray et al., 1989, Nucleic Acids Res. 17:477-498.

Additional sequence modifications are known to enhance gene expression in a cellular host. These include elimination of sequences encoding spurious polyadenylation signals, exon-intron splice site signals, transposon-like repeats, and other such well-characterized sequences that may be deleterious to gene expression. The G-C content of the sequence may be adjusted to levels average for a given cellular host, as calculated by reference to known genes expressed in the host cell. When desired, the sequence is modified to avoid predicted hairpin secondary mRNA structures. However, it is recognized that in the case of nucleotide sequences encoding the miRNA precursors, one or more hairpin and other secondary structures may be desired for proper processing of the precursor into an mature miRNA and/or for the functional activity of the miRNA in gene silencing.

The expression cassettes can additionally contain 5′ leader sequences in the expression cassette construct. Such leader sequences can act to enhance translation. Translation leaders are known in the art and include: picornavirus leaders, for example, EMCV leader (Encephalomyocarditis 5′ noncoding region) (Elroy-Stein et al., 1989, PNAS USA 86:6126-6130); potyvirus leaders, for example, TEV leader (Tobacco Etch Virus) (Allison et al., 1986); MDMV leader (Maize Dwarf Mosaic Virus); Virology 154:9-20), and human immunoglobulin heavy-chain binding protein (BiP), (Macejak et al., 1991, Nature 353:90-94); untranslated leader from the coat protein miRNA of alfalfa mosaic virus (AMV RNA 4) (Jobling et al., 1987, Nature 325:622-625); tobacco mosaic virus leader (TMV) (Gallie et al., 1989, Molecular Biology of RNA, ed. Cech (Liss, New York), pp. 237-256); and maize chlorotic mottle virus leader (MCMV) (Lommel et al., 1991, Virology 81:382-385). See also, Della-Cioppa et al., 1987, Plant Physiol. 84:965-968.

In preparing the expression cassette, the various DNA fragments can be manipulated, so as to provide for the DNA sequences in the proper orientation and, as appropriate, in the proper reading frame. Toward this end, adapters or linkers can be employed to join the DNA fragments or other manipulations may be involved to provide for convenient restriction sites, removal of superfluous DNA, removal of restriction sites, or the like. For this purpose, in vitro mutagenesis, primer repair, restriction, annealing, resubstitutions, e.g., transitions and transversions, may be involved.

An illustrative vector enoding CCA1 for overexpression in plants is described infra. Wang et al., 1998, Cell 93:1207-1217 also describes a vector for overexpressing CCA1 in plants. An illustrative vector enoding GLK1 for overexpression in plants is described infra. Further, Fitter et al., 2002, The Plant Journal 31:713-727 describe an insertion mutant in the GLK1 gene such that expression of GLK1 is disrupted.

6.5 Promoters and Other Regulatory Sequences

In the broad method of the invention, at least one nucleic acid sequence encoding CCA1, GLK1 or bZIP1 or a nucleic acid designed to disrupt expression of same is operably linked with a promoter, such as a leaf-preferred or leaf-specific promoter. It may be desirable to introduce more than one copy of a polynucleotide into a plant for enhanced expression. For example, multiple copies of a GLK1 polynucleotide would have the effect of increasing production of GLK1 even further in the plant. In specific embodiments, the GLK1 polynucleotide is expressed primarily or entirely in vegetative cells of the plant.

In general, promoters are found positioned 5′ (upstream) of the genes that they control. Thus, in the construction of promoter gene combinations, the promoter is preferably positioned upstream of the gene and at a distance from the transcription start site that approximates the distance between the promoter and the gene it controls in the natural setting. As is known in the art, some variation in this distance can be tolerated without loss of promoter function. Similarly, the preferred positioning of a regulatory element, such as an enhancer, with respect to a heterologous gene placed under its control reflects its natural position relative to the structural gene it naturally regulates. In certain specific embodiments, bZIP1 is under the control of a seed-specific promoter, and may optionally comprise other regulatory elements that result in constitutive or inducible expression of bZIP1.

Thus, the nucleic acid, in one embodiment, is operably linked to a gene expression sequence, which directs the expression of the nucleic acid within the cell. A “gene expression sequence,” as used herein, is any regulatory nucleotide sequence, such as a promoter sequence or promoter-enhancer combination, which facilitates the efficient transcription and translation of the nucleotide sequence to which it is operably linked. The gene expression sequence may, for example, be a eukaryotic promoter or a viral promoter, such as a constitutive or inducible promoter. Promoters and enhancers consist of short arrays of DNA sequences that interact specifically with cellular proteins involved in transcription, for instance, as discussed in Maniatis et al., 1987, Science 236:1237. Promoter and enhancer elements have been isolated from a variety of eukaryotic sources including genes in plant, yeast, insect and mammalian cells and viruses (analogous control elements, i.e., promoters, are also found in prokaryotes). In some embodiments, the nucleic acid is linked to a gene expression sequence which permits expression of the nucleic acid in a plant cell. A sequence which permits expression of the nucleic acid in a plant cell is one which is selectively active in the particular plant cell and thereby causes the expression of the nucleic acid in these cells. Those of ordinary skill in the art will be able to easily identify promoters that are capable of expressing a nucleic acid in a cell based on the type of plant cell.

A number of promoters can be used in the practice of the invention. The promoters can be selected based on the desired outcome. Generally, the nucleotide sequence and the modulator sequences can be combined with promoters of choice to alter gene expression if the target sequences in the tissue or organ of choice. Thus, the nucleotide sequence or modulator nucleotide sequence can be combined with constitutive, tissue-preferred, inducible, developmental, or other promoters for expression in plants depending upon the desired outcome.

The selection of a particular promoter and enhancer depends on what cell type is to be used and the mode of delivery. For example, a wide variety of promoters have been isolated from plants and animals, which are functional not only in the cellular source of the promoter, but also in numerous other plant species. There are also other promoters (e.g., viral and Ti-plasmid) which can be used. For example, these promoters include promoters from the Ti-plasmid, such as the octopine synthase promoter, the nopaline synthase promoter, the mannopine synthase promoter, and promoters from other open reading frames in the T-DNA, such as ORF7, etc. Promoters isolated from plant viruses include the 35S promoter from cauliflower mosaic virus. Promoters that have been isolated and reported for use in plants include ribulose-1,3-biphosphate carboxylase small subunit promoter, phaseolin promoter, etc. Thus, a variety of promoters and regulatory elements may be used in the expression vectors of the present invention.

Promoters useful in the compositions and methods provided herein include both natural constitutive and inducible promoters as well as engineered promoters. The CaMV promoters are examples of constitutive promoters. Other constitutive mammalian promoters include, but are not limited to, polymerase promoters as well as the promoters for the following genes: hypoxanthine phosphoribosyl transferase (“HPTR”), adenosine deaminase, pyruvate kinase, and alpha-actin.

Promoters useful as expression elements of the invention also include inducible promoters. Inducible promoters are expressed in the presence of an inducing agent. For example, a metallothionein promoter can be induced to promote transcription in the presence of certain metal ions. Other inducible promoters are known to those of ordinary skill in the art. The in vivo expression element can include, as necessary, 5′ non-transcribing and 5′ non-translating sequences involved with the initiation of transcription, and can optionally include enhancer sequences or upstream activator sequences.

For example, in some embodiments an inducible promoter is used to allow control of nucleic acid expression through the presentation of external stimuli (e.g., environmentally inducible promoters), as discussed below. Thus, the timing and amount of nucleic acid expression can be controlled in some cases. Non-limiting examples of expression systems, promoters, inducible promoters, environmentally inducible promoters, and enhancers are well known to those of ordinary skill in the art. Examples include those described in International Patent Application Publications WO 00/12714, WO 00/11175, WO 00/12713, WO 00/03012, WO 00/03017, WO 00/01832, WO 99/50428, WO 99/46976 and U.S. Pat. Nos. 6,028,250, 5,959,176, 5,907,086, 5,898,096, 5,824,857, 5,744,334, 5,689,044, and 5,612,472. A general descriptions of plant expression vectors and reporter genes can also be found in Gruber et al., 1993, “Vectors for Plant Transformation,” in Methods in Plant Molecular Biology & Biotechnology, Glich et al., Eds., p. 89-119, CRC Press.

For plant expression vectors, viral promoters that can be used in certain embodiments include the 35S RNA and 19S RNA promoters of CaMV (Brisson et al., Nature, 1984, 310:511; Odell et al., Nature, 1985, 313:810); the full-length transcript promoter from Figwort Mosaic Virus (FMV) (Gowda et al., 1989, J. Cell Biochem., 13D: 301) and the coat protein promoter to TMV (Takamatsu et al., 1987, EMBO J. 6:307). Alternatively, plant promoters such as the light-inducible promoter from the small subunit of ribulose bis-phosphate carboxylase (ssRUBISCO) (Coruzzi et al., 1984, EMBO J., 3:1671; Broglie et al., 1984, Science, 224:838); mannopine synthase promoter (Velten et al., 1984, EMBO J., 3:2723) nopaline synthase (NOS) and octopine synthase (OCS) promoters (carried on tumor-inducing plasmids of Agrobacterium tumefaciens) or heat shock promoters, e.g., soybean hsp17.5-E or hsp17.3-B (Gurley et al., 1986, Mol. Cell. Biol., 6:559; Severin et al., 1990, Plant Mol. Biol., 15:827) may be used. Exemplary viral promoters which function constitutively in eukaryotic cells include, for example, promoters from the simian virus, papilloma virus, adenovirus, human immunodeficiency virus, Rous sarcoma virus, cytomegalovirus, the long terminal repeats of Moloney leukemia virus and other retroviruses, and the thymidine kinase promoter of herpes simplex virus. Other constitutive promoters are known to those of ordinary skill in the art.

To be most useful, an inducible promoter should 1) provide low expression in the absence of the inducer; 2) provide high expression in the presence of the inducer; 3) use an induction scheme that does not interfere with the normal physiology of the plant; and 4) have no effect on the expression of other genes. Examples of inducible promoters useful in plants include those induced by chemical means, such as the yeast metallothionein promoter which is activated by copper ions (Mett et al., Proc. Natl. Acad. Sci., U.S.A., 90:4567, 1993); In2-1 and In2-2 regulator sequences which are activated by substituted benzenesulfonamides, e.g., herbicide safeners (Hershey et al., Plant Mol. Biol., 17:679, 1991); and the GRE regulatory sequences which are induced by glucocorticoids (Schena et al., Proc. Natl. Acad. Sci., U.S.A., 88:10421, 1991). Other promoters, both constitutive and inducible will be known to those of skill in the art.

A number of inducible promoters are known in the art. For resistance genes, a pathogen-inducible promoter can be utilized. Such promoters include those from pathogenesis-related proteins (PR proteins), which are induced following infection by a pathogen; e.g., PR proteins, SAR proteins, beta-1,3-glucanase, chitinase, etc. See, for example, Redolfi et al., 1983, Neth. J. Plant Pathol. 89:245-254; Uknes et al., 1992, Plant Cell 4:645-656; and Van Loon, 1985, Plant Mol. Virol. 4:111-116. Of particular interest are promoters that are expressed locally at or near the site of pathogen infection. See, for example, Marineau et al., 1987, Plant Mol. Biol. 9:335-342; Matton et al., 1989, Molecular Plant-Microbe Interactions 2:325-331; Somsisch et al., 1986, Proc. Natl. Acad. Sci. USA 83:2427-2430; Somsisch et al., 1988, Mol. Gen. Genet. 2:93-98; and Yang, 1996, Proc. Natl. Acad. Sci. USA 93:14972-14977. See also, Chen et al., 1996, Plant J. 10:955-966; Zhang et al., 1994, Proc. Natl. Acad. Sci. USA 91:2507-2511; Warner et al., 1993, Plant J. 3:191-201; Siebertz et al., 1989, Plant Cell 1:961-968; U.S. Pat. No. 5,750,386; Cordero et al., 1992, Physiol. Mol. Plant. Path. 41:189-200; and the references cited therein.

Additionally, as pathogens find entry into plants through wounds or insect damage, a wound-inducible promoter may be used in the DNA constructs of the invention. Such wound-inducible promoters include potato proteinase inhibitor (pin II) gene (Ryan, 1990, Ann. Rev. Phytopath. 28:425-449; Duan et al., 1996, Nature Biotechnology 14:494-498); wun1 and wun2, U.S. Pat. No. 5,428,148; win1 and win2 (Stanford et al., 1989, Mol. Gen. Genet. 215:200-208); systemin (McGurl et al., 1992, Science 225:1570-1573); WIPI (Rohmeier et al., 1993, Plant Mol. Biol. 22:783-792; Eckelkamp et al., 1993, FEBS Letters 323:73-76); MPI gene (Corderok et al., 1994, Plant J. 6(2):141-150); and the like. Such references are herein incorporated by reference.

Chemical-regulated promoters can be used to modulate the expression of a gene in a plant through the application of an exogenous chemical regulator. Depending upon the objective, the promoter may be a chemical-inducible promoter, where application of the chemical induces gene expression, or a chemical-repressible promoter, where application of the chemical represses gene expression. Chemical-inducible promoters are known in the art and include, but are not limited to, the maize In2-2 promoter, which is activated by benzenesulfonamide herbicide safeners, the maize GST promoter, which is activated by hydrophobic electrophilic compounds that are used as pre-emergent herbicides, and the tobacco PR-1 a promoter, which is activated by salicylic acid. Other chemical-regulated promoters of interest include steroid-responsive promoters (see, for example, the glucocorticoid-inducible promoter in Schena et al., 1991, Proc. Natl. Acad. Sci. USA 88:10421-10425 and McNellis et al., 1998, Plant J. 14(2):247-257) and tetramiR167e-inducible and tetramiR167e-repressible promoters (see, for example, Gatz et al., 1991, Mol. Gen. Genet. 227:229-237, and U.S. Pat. Nos. 5,814,618 and 5,789,156), herein incorporated by reference.

Where enhanced expression in particular tissues is desired, tissue-preferred promoters can be utilized. Tissue-preferred promoters include those described by Yamamoto et al., 1997, Plant J. 12(2):255-265; Kawamata et al., 1997, Plant Cell Physiol. 38(7):792-803; Hansen et al., 1997, Mol. Gen. Genet. 254(3):337-343; Russell et al., 1997, Transgenic Res. 6(2):157-168; Rinehart et al., 1996, Plant Physiol. 112(3):1331-1341; Van Camp et al., 1996, Plant Physiol. 112(2):525-535; Canevascini et al., 1996, Plant Physiol. 12(2):513-524; Yamamoto et al., 1994, Plant Cell Physiol. 35(5):773-778; Lam, 1994, Results Probl. Cell Differ. 20:181-196; Orozco et al., 1993, Plant Mol. Biol. 23(6): 1129-1138; Matsuoka et al., 1993, Proc Natl. Acad. Sci. USA 90(20):9586-9590; and Guevara-Garcia et al., 1993, Plant J 4(3):495-505.

The particular promoter selected should be capable of causing sufficient expression to result in the production of an effective amount of structural gene product in the transgenic plant, e.g., GLK1 to cause upregulation of genes such as GLN1.3 and increased nitrogen assimilation, biomass, overall plant growth or yield, and/or other phenotypes described herein, as compared to wild type. The promoters used in the vector constructs of the present invention may be modified, if desired, to affect their control characteristics. In certain embodiments, chimeric promoters can be used.

There are promoters known which limit expression to particular plant parts or in response to particular stimuli. One skilled in the art will know of many such plant part-specific promoters which would be useful in the present invention. In certain embodiments, to provide pericycle-specific expression, any of a number of promoters from genes in Arabidopsis can be used. In some embodiments, the promoter from one (or more) of the following genes may be used: (i) At1g11080, (ii) At3g60160, (iii) At1g24575, (iv) At3g45160, or (v) At1g23130. In specific embodiments, we will also use (vi) promoter elements from the GFP-marker line used in Gifford et al. (in preparation) (see also, Bonke et al., 2003, Nature 426, 181-6; Tian et al., 2004, Plant Physiol 135, 25-38). Several of the predicted genes have a number of potential orthologs in rice and poplar and thus are predicted that they will be applicable for use in crop species; (i) Os04g44410, Os10g39560, Os06g51370, Os02g42310, Os01g22980, Os05g06660, and Poptr1#568263, Poptr1#555534, Poptr1#365170; (ii) Os04g49900, Os04g49890, Os01g67580, and Poptr1#87573, Poptr1#80582, Poptr1#565079, Poptr1#99223.

Promoters used in the nucleic acid constructs of the present invention can be modified, if desired, to affect their control characteristics. For example, the CaMV 35S promoter may be ligated to the portion of the ssRUBISCO gene that represses the expression of ssRUBISCO in the absence of light, to create a promoter which is active in leaves but not in roots. The resulting chimeric promoter may be used as described herein. For purposes of this description, the phrase “CaMV 35S” promoter thus includes variations of CaMV 35S promoter, e.g., promoters derived by means of ligation with operator regions, random or controlled mutagenesis, etc. Furthermore, the promoters may be altered to contain multiple “enhancer sequences” to assist in elevating gene expression.

An efficient plant promoter that may be used in specific embodiments is an “overproducing” or “overexpressing” plant promoter. Overexpressing plant promoters that can be used in the compositions and methods provided herein include the promoter of the small sub-unit (“ss”) of the ribulose-1,5-biphosphate carboxylase from soybean (e.g., Berry-Lowe et al., 1982, J. Molecular & App. Genet., 1:483), and the promoter of the chorophyll a-b binding protein. These two promoters are known to be light-induced in eukaryotic plant cells. For example, see Cashmore, Genetic Engineering of plants: An Agricultural Perspective, p. 29-38; Coruzzi et al., 1983, J. Biol. Chem., 258:1399; and Dunsmuir et al., 1983, J. Molecular & App. Genet., 2:285.

The promoters and control elements of, e.g., SUCS (root nodules; broadbean; Kuster et al., 1993, Mol Plant Microbe Interact 6:507-14) for roots can be used in compositions and methods provided herein to confer tissue specificity.

In certain embodiment, two promoter elements can be used in combination, such as, for example, (i) an inducible element responsive to a treatment that can be provided to the plant prior to N-fertilizer treatment, and (ii) a plant tissue-specific expression element to drive expression in the specific tissue alone.

Any promoter of other expression element described herein or known in the art may be used either alone or in combination with any other promoter or other expression element described herein or known in the art. For example, promoter elements that confer tissue specific expression of a gene can be used with other promoter elements conferring constitutive or inducible expression.

6.6 Isolating Related Promoter Sequences

Promoter and promoter control elements that are related to those described in herein can also be used in the compositions and methods provided herein. Such related sequence can be isolated utilizing (a) nucleotide sequence identity; (b) coding sequence identity of related, orthologous genes; or (c) common function or gene products.

Relatives can include both naturally occurring promoters and non-natural promoter sequences. Non-natural related promoters include nucleotide substitutions, insertions or deletions of naturally-occurring promoter sequences that do not substantially affect transcription modulation activity. For example, the binding of relevant DNA binding proteins can still occur with the non-natural promoter sequences and promoter control elements of the present invention.

According to current knowledge, promoter sequences and promoter control elements exist as functionally important regions, such as protein binding sites, and spacer regions. These spacer regions are apparently required for proper positioning of the protein binding sites. Thus, nucleotide substitutions, insertions and deletions can be tolerated in these spacer regions to a certain degree without loss of function.

In contrast, less variation is permissible in the functionally important regions, since changes in the sequence can interfere with protein binding. Nonetheless, some variation in the functionally important regions is permissible so long as function is conserved.

The effects of substitutions, insertions and deletions to the promoter sequences or promoter control elements may be to increase or decrease the binding of relevant DNA binding proteins to modulate transcript levels of a polynucleotide to be transcribed. Effects may include tissue-specific or condition-specific modulation of transcript levels of the polypeptide to be transcribed. Polynucleotides representing changes to the nucleotide sequence of the DNA-protein contact region by insertion of additional nucleotides, changes to identity of relevant nucleotides, including use of chemically-modified bases, or deletion of one or more nucleotides are considered encompassed by the present invention.

Typically, related promoters exhibit at least 80% sequence identity, preferably at least 85%, more preferably at least 90%, and most preferably at least 95%, even more preferably, at least 96%, at least 97%, at least 98% or at least 99% sequence identity. Such sequence identity can be calculated by the algorithms and computers programs described above.

Usually, such sequence identity is exhibited in an alignment region that is at least 75% of the length of a sequence or corresponding full-length sequence of a promoter described herein; more usually at least 80%; more usually, at least 85%, more usually at least 90%, and most usually at least 95%, even more usually, at least 96%, at least 97%, at least 98% or at least 99% of the length of a sequence of a promoter described herein.

The percentage of the alignment length is calculated by counting the number of residues of the sequence in region of strongest alignment, e.g., a continuous region of the sequence that contains the greatest number of residues that are identical to the residues between two sequences that are being aligned. The number of residues in the region of strongest alignment is divided by the total residue length of a sequence of a promoter described herein. These related promoters may exhibit similar preferential transcription as those promoters described herein.

In certain embodiments, a promoter, such as a leaf-preferred or leaf-specific promoter, can be identified by sequence homology or sequence identity to any root specific promoter identified herein. In other embodiments, orthologous genes identified herein as leaf-specific genes (e.g., the same gene or different gene that if functionally equivalent) for a given species can be identified and the associated promoter can also be used in the compositions and methods provided herein. For example, using high, medium or low stringency conditions, standard promoter rules can be used to identify other useful promoters from orthologous genes for use in the compositions and methods provided herein. In specific embodiments, the orthologous gene is a gene expressed only or primarily in the root, such as pericycle cells.

Polynucleotides can be tested for activity by cloning the sequence into an appropriate vector, transforming plants with the construct and assaying for marker gene expression. Recombinant DNA constructs can be prepared, which comprise the polynucleotide sequences of the invention inserted into a vector suitable for transformation of plant cells. The construct can be made using standard recombinant DNA techniques (Sambrook et al., 1989) and can be introduced to the species of interest by Agrobacterium-mediated transformation or by other means of transformation as referenced below.

The vector backbone can be any of those typical in the art such as plasmids, viruses, artificial chromosomes, BACs, YACs and PACs and vectors of the sort described by (a) BAC: Shizuya et al., 1992, Proc. Natl. Acad. Sci. USA 89: 8794-8797; Hamilton et al., 1996, Proc. Natl. Acad. Sci. USA 93: 9975-9979; (b) YAC: Burke et al., 1987, Science 236:806-812; (c) PAC: Sternberg N. et al., 1990, Proc Natl Acad Sci USA. January; 87(1):103-7; (d) Bacteria-Yeast Shuttle Vectors: Bradshaw et al., 1995, Nucl Acids Res 23: 4850-4856; (e) Lambda Phage Vectors: Replacement Vector, e.g., Frischauf et al., 1983, J. Mol. Biol. 170: 827-842; or Insertion vector, e.g., Huynh et al., 1985, In: Glover N M (ed) DNA Cloning: A practical Approach, Vol. 1 Oxford: IRL Press; T-DNA gene fusion vectors: Walden et al., 1990, Mol Cell Biol 1: 175-194; and (g) Plasmid vectors: Sambrook et al., infra.

Typically, the construct comprises a vector containing a sequence of the present invention operationally linked to any marker gene. The polynucleotide was identified as a promoter by the expression of the marker gene. Although many marker genes can be used, Green Fluorescent Protein (GFP) is preferred. The vector may also comprise a marker gene that confers a selectable phenotype on plant cells. The marker may encode biocide resistance, particularly antibiotic resistance, such as resistance to kanamycin, G418, bleomycin, hygromycin, or herbicide resistance, such as resistance to chlorosulfuron or phosphinotricin (see below). Vectors can also include origins of replication, scaffold attachment regions (SARs), markers, homologous sequences, introns, etc.

6.7 Tissue or Cell-Type Preferential Transcription

The invention also provides a method of providing increased transcription of a nucleic acid sequence in a selected tissue, such as vegetative tissues, leaves, seeds, fruit, etc. The method comprises growing a plant having integrated in its genome a nucleic acid construct comprising, an exogeneous gene encoding CCA1, GLK1 or bZIP1, said gene operably associated with a tissue specific promoter, whereby transcription of said gene is increased (or decreased) in said selected tissue.

Specific promoters may be used in the compositions and methods provided herein. As used herein, “specific promoters” refers to a subset of promoters that have a high preference for modulating transcript levels in a specific tissue or organ or cell and/or at a specific time during development of an organism. By “high preference” is meant at least 3-fold, preferably 5-fold, more preferably at least 10-fold still more preferably at least 20-fold, 50-fold or 100-fold increase in transcript levels under the specific condition over the transcription under any other reference condition considered. Typical examples of temporal and/or tissue or organ specific promoters of plant origin that can be used in the compositions and methods of the present invention, include RCc2 and RCc3, promoters that direct root-specific gene transcription in rice (Xu et al., 1995, Plant Mol. Biol. 27:237 and TobRB27, a root-specific promoter from tobacco (Yamamoto et al., 1991, Plant Cell 3:371). Examples of tissue-specific promoters under developmental control include promoters that initiate transcription only in certain tissues or organs, such as roots

“Preferential transcription” is defined as transcription that occurs in a particular pattern of cell types or developmental times or in response to specific stimuli or combination thereof. Non-limitative examples of preferential transcription include: high transcript levels of a desired sequence in root tissues; detectable transcript levels of a desired sequence in certain cell types during embryogenesis; and low transcript levels of a desired sequence under drought conditions. Such preferential transcription can be determined by measuring initiation, rate, and/or levels of transcription.

Promoters and control elements providing preferential transcription in a root can modulate growth, metabolism, development, nutrient uptake, nitrogen fixation, or modulate energy and nutrient utilization in host cells or organisms. In a plant, for example, preferential modulation of genes, transcripts, and/or in a leaf, is useful (1) to modulate root size, shape, and development; (2) to modulate the number of roots, or root hairs; (3) to modulate mineral, fertilizer, or water uptake; (4) to modulate transport of nutrients; or (4) to modulate energy or nutrient usage in relation to other organs and tissues. Up-regulation and transcription down-regulation is useful for these applications. For instance, genes, transcripts, and/or polypeptides that increase growth, for example, may require up-regulation of transcription. In contrast, transcriptional down-regulation may be desired to inhibit nutrient usage in a root to be directed to the leaf instead, for instance.

Typically, promoter or control elements, which provide preferential transcription in cells, tissues, or organs of a root, produce transcript levels that are statistically significant as compared to other cells, organs or tissues. For preferential up-regulation of transcription, promoter and control elements produce transcript levels that are above background of the assay.

Root-preferred promoters are known and can be selected from the many available from the literature. See, for example, Hire et al., 1992, Plant Mol. Biol. 20(2): 207-218 (soybean root-preferred glutamine synthetase gene); Keller and Baumgartner, 1991, Plant Cell 3(10):1051-1061 (root-preferred control element in the GRP 1.8 gene of French bean); Sanger et al., 1990, Plant Mol. Biol. 14(3):433-443 (root-preferred promoter of the mannopine synthase (MAS) gene of Agrobacterium tumefaciens); Miao et al., 1991, Plant Cell 3(1):11-22 (full-length cDNA clone encoding cytosolic glutamine synthetase (GS), which is expressed in roots and root nodules of soybean). Bogusz et al., 1990, Plant Cell 2(7):633-641 (root-preferred promoters from hemoglobin genes from the nitrogen-fixing nonlegume Parasponia andersonii and the related non-nitrogen-fixing nonlegume Trema tomentosa). Leach and Aoyagi, 1991, Plant Science (Limerick) 79(1):69-76 (ro1C and ro1D root-inducing genes of Agrobacterium rhizogenes); Teeri et al., 1989, EMBO J. 8(2):343-350) (octopine synthase and TR2′ gene); (VfENOD-GRP3 gene promoter); Kuster et al., 1995, Plant Mol. Biol. 29(4):759-772 and Capana et al., 1994, Plant Mol. Biol. 25(4):681-691 ro1B promoter. See also U.S. Pat. Nos. 5,837,876; 5,750,386; 5,633,363; 5,459,252; 5,401,836; 5,110,732; and 5,023,179, root-specific glutamine synthetase (see Tingey et al., 1987, EMBO J., 6:1-9; Edwards et al., 1990, PNAS, 87:3439-3463). In addition, promoters of the above-listed orthologous genes in other plant species can be identified and used in the compositions and methods provided herein.

In specific embodiments, the compositions and methods provided herein use leaf-specific promoters operably associated to a nucleotide encoding bZIP1. In certain embodiments, the promoter is a constitutive or inducible promoter. In another specific embodiment, the compositions and methods provided herein use vegetative tissue-specific promoters operably associated to a nucleotide encoding CCA1 and/or GLK1. In certain embodiments, the promoter is a constitutive or inducible promoter.

6.8 Selectable Markers

Using any gene transfer technique, such as the above-listed techniques, an expression vector harboring the nucleic acid may be transformed into a cell to achieve temporary or prolonged expression. Any suitable expression system may be used, so long as it is capable of undergoing transformation and expressing of the precursor nucleic acid in the cell. In one embodiment, a pET vector (Novagen, Madison, Wis.), or a pBI vector (Clontech, Palo Alto, Calif.) is used as the expression vector. In some embodiments an expression vector further encoding a green fluorescent protein (“GFP”) is used to allow simple selection of transfected cells and to monitor expression levels. Non-limiting examples of such vectors include Clontech's “Living Colors Vectors” pEYFP and pEYFP-C.

The recombinant construct of the present invention may include a selectable marker for propagation of the construct. For example, a construct to be propagated in bacteria preferably contains an antibiotic resistance gene, such as one that confers resistance to kanamycin, tetracycline, streptomycin, or chloramphenicol. Suitable vectors for propagating the construct include plasmids, cosmids, bacteriophages or viruses, to name but a few.

In addition, the recombinant constructs may include plant-expressible selectable or screenable marker genes for isolating, identifying or tracking of plant cells transformed by these constructs. Selectable markers include, but are not limited to, genes that confer antibiotic resistances (e.g., resistance to kanamycin or hygromycin) or herbicide resistance (e.g., resistance to sulfonylurea, phosphinothricin, or glyphosate). Screenable markers include, but are not limited to, the genes encoding .beta.-glucuronidase (Jefferson, 1987, Plant Molec Biol. Rep 5:387-405), luciferase (Ow et al., 1986, Science 234:856-859), B and C1 gene products that regulate anthocyanin pigment production (Goff et al., 1990, EMBO J. 9:2517-2522).

In some cases, a selectable marker may be included with the nucleic acid being delivered to the cell. As used herein, the term “selectable marker” refers to the use of a gene that encodes an enzymatic or other detectable activity (e.g., luminescence or fluorescence) that confers the ability to grow in medium lacking what would otherwise be an essential nutrient. A selectable marker may also confer resistance to an antibiotic or drug upon the cell in which the selectable marker is expressed. Selectable markers may be “dominant” in some cases; a dominant selectable marker encodes an enzymatic or other activity (e.g., luminescence or fluorescence) that can be detected in any cell or cell line.

Optionally, a selectable marker may be associated with the CCA1-, GLK1 or bZIP1-encoding nucleic acid. Preferably, the marker gene is an antibiotic resistance gene whereby the appropriate antibiotic can be used to select for transformed cells from among cells that are not transformed. Examples of suitable selectable markers include adenosine deaminase, dihydrofolate reductase, hygromycin-B-phosphotransferase, thymidine kinase, xanthine-guanine phospho-ribosyltransferase and amino-glycoside 3′-O-phosphotransferase II. Other suitable markers will be known to those of skill in the art.

6.9 Selection and Identification of Transformed Plants and Plant Cells

According to the present invention, desired plants may be obtained by engineering the disclosed gene constructs into a variety of plant cell types, including but not limited to, protoplasts, tissue culture cells, tissue and organ explants, pollens, embryos as well as whole plants. In specific embodiments, the gene constructs are engineered into leaves, preferably with the use of a leaf-specific promoter.

In an embodiment of the present invention, the engineered plant material is selected or screened for transformants (those that have incorporated or integrated the introduced gene construct(s)) following the approaches and methods described below. An isolated transformant may then be regenerated into a plant. Alternatively, the engineered plant material may be regenerated into a plant or plantlet before subjecting the derived plant or plantlet to selection or screening for the marker gene traits. Procedures for regenerating plants from plant cells, tissues or organs, either before or after selecting or screening for marker gene(s), are well known to those skilled in the art.

A transformed plant cell, callus, tissue or plant may be identified and isolated by selecting or screening the engineered plant material for traits encoded by the marker genes present on the transforming DNA. For instance, selection may be performed by growing the engineered plant material on media containing inhibitory amount of the antibiotic or herbicide to which the transforming gene construct confers resistance. Further, transformed plants and plant cells may also be identified by screening for the activities of any visible marker genes (e.g., the β-glucuronidase, luciferase, B or C1 genes) that may be present on the recombinant nucleic acid constructs of the present invention. Such selection and screening methodologies are well known to those skilled in the art.

Physical and biochemical methods also may be also to identify plant or plant cell transformants containing the gene constructs of the present invention. These methods include but are not limited to: 1) Southern analysis or PCR amplification for detecting and determining the structure of the recombinant DNA insert; 2) Northern blot, 51 RNase protection, primer-extension or reverse transcriptase-PCR amplification for detecting and examining RNA transcripts of the gene constructs; 3) enzymatic assays for detecting enzyme or ribozyme activity, where such gene products are encoded by the gene construct; 4) protein gel electrophoresis, Western blot techniques, immunoprecipitation, or enzyme-linked immunoassays, where the gene construct products are proteins. Additional techniques, such as in situ hybridization, enzyme staining, and immunostaining, also may be used to detect the presence or expression of the recombinant construct in specific plant organs and tissues. The methods for doing all these assays are well known to those skilled in the art.

6.10 Screening of Transformed Plants for Those with Improved Agronomic Traits

According to the present invention, to obtain plants with improved agronomic characteristics, the transformed plants may be screened for those exhibiting the desired physiological alteration. Alternatively, the transformed plants may be directly screened for those exhibiting the desired agronomic changes. A plant with the desired improvement can be isolated by screening the engineered plants for altered expression pattern or level of CCA1, GLK1 and/or bZIP1, or downstream gene products such as GLN1.3 or ASN1. A plant can also be screened for nutrient uptake, overall increased plant growth rate, enhanced vegetative yield, improved reproductive yields, increased levels of glutamine or asparagine, or increased nitrogen usage or storage. The screening of the engineered plants can involve Southern analysis to confirm the presence and number of transgene insertions; Northern analysis, RNase protection, primer extension, reverse transcriptase/PCR and the like to measure mRNA levels; measuring the amino acid composition, free amino acid pool or total nitrogen content of various plant tissues; measuring growth rates in terms of fresh weight gains over time; or measuring plant yield in terms of total dry weight and/or total seed weight, or a combination of any of the above methods. The procedures and methods for examining these parameters are well known to those skilled in the art.

In other embodiments, the screening of the transformed plants may be for improved agronomic characteristics (e.g., faster growth, greater vegetative or reproductive yields, or improved protein contents, etc.), as compared to unengineered progenitor plants, when cultivated under growth conditions (i.e., cultivated using soils or media containing or receiving sufficient amounts of nitrogen nutrients to sustain healthy plant growth).

Plants exhibiting increased growth and/or yield as compared with wild-type plants can be selected by visual observation, methods provided in the Examples, or other methods known in the art.

A “plant capable of increased yield” refers to a plant that can be induced to express its endogenous CCA1, GLK1 and/or bZIP1 gene to achieve increased yield. The term “promoter inducing amount” refers to that amount of an agent necessary to elevate such gene expression above such expression in a plant cell not contacted with the agent, by stimulating the endogenous promoter. For example, a transcription factor or a chemical agent may be used to elevate gene expression from native or chimeric CCA1, GLK1 and/or bZIP1 promoter, thus inducing the promoter and gene expression.

6.11 Cells

Optionally, germ line cells may be used in the methods described herein rather than, or in addition to, somatic cells. The term “germ line cells” refers to cells in the plant organism which can trace their eventual cell lineage to either the male or female reproductive cell of the plant. Other cells, referred to as “somatic cells” are cells which give rise to leaves, roots and vascular elements which, although important to the plant, do not directly give rise to gamete cells. Somatic cells, however, also may be used. With regard to callus and suspension cells which have somatic embryogenesis, many or most of the cells in the culture have the potential capacity to give rise to an adult plant. If the plant originates from single cells or a small number of cells from the embryogenic callus or suspension culture, the cells in the callus and suspension can therefore be referred to as germ cells. In the case of immature embryos which are prepared for treatment by the methods described herein, certain cells in the apical meristem region of the plant have been shown to produce a cell lineage which eventually gives rise to the female and male reproductive organs. With many or most species, the apical meristem is generally regarded as giving rise to the lineage that eventually will give rise to the gamete cells. An example of a non-gamete cell in an embryo would be the first leaf primordia in corn which is destined to give rise only to the first leaf and none of the reproductive structures.

6.12 Plant Regeneration

Following transformation, a plant may be regenerated, e.g., from single cells, callus tissue or leaf discs, as is standard in the art. Almost any plant can be entirely regenerated from cells, tissues, and organs of the plant. Available techniques are reviewed in Vasil et al., 1984, in Cell Culture and Somatic Cell Genetics of Plants, Vols. I, II, and III, Laboratory Procedures and Their Applications (Academic Press); and Weissbach et al., 1989, Methods For Plant Mol. Biol.

The transformed plants may then be grown, and either pollinated with the same transformed strain or different strains, and the resulting hybrid having expression of the desired phenotypic characteristic identified. Two or more generations may be grown to ensure that expression of the desired phenotypic characteristic is stably maintained and inherited and then seeds harvested to ensure expression of the desired phenotypic characteristic has been achieved.

Normally, a plant cell is regenerated to obtain a whole plant from the transformation process. The term “growing” or “regeneration” as used herein means growing a whole plant from a plant cell, a group of plant cells, a plant part (including seeds), or a plant piece (e.g., from a protoplast, callus, or tissue part).

Regeneration from protoplasts varies from species to species of plants, but generally a suspension of protoplasts is first made. In certain species, embryo formation can then be induced from the protoplast suspension. The culture media will generally contain various amino acids and hormones, necessary for growth and regeneration. Examples of hormones utilized include auxins and cytokinins. Efficient regeneration will depend on the medium, on the genotype, and on the history of the culture. If these variables are controlled, regeneration is reproducible.

Regeneration also occurs from plant callus, explants, organs or parts. Transformation can be performed in the context of organ or plant part regeneration (see Methods in Enzymology, Vol. 118 and Klee et al., Annual Review of Plant Physiology, 38:467, 1987). Utilizing the leaf disk-transformation-regeneration method of Horsch et al., Science, 227:1229, 1985, disks are cultured on selective media, followed by shoot formation in about 2-4 weeks. Shoots that develop are excised from calli and transplanted to appropriate root-inducing selective medium. Rooted plantlets are transplanted to soil as soon as possible after roots appear. The plantlets can be repotted as required, until reaching maturity.

In vegetatively propagated crops, the mature transgenic plants are propagated by utilizing cuttings or tissue culture techniques to produce multiple identical plants. Selection of desirable transgenics is made and new varieties are obtained and propagated vegetatively for commercial use.

In seed propagated crops, mature transgenic plants can be self crossed to produce a homozygous inbred plant. The resulting inbred plant produces seed containing the newly introduced foreign gene(s). These seeds can be grown to produce plants that would produce the selected phenotype, e.g., increased lateral root growth, uptake of nutrients, overall plant growth and/or vegetative or reproductive yields.

Parts obtained from the regenerated plant, such as flowers, seeds, leaves, branches, fruit, and the like are included in the invention, provided that these parts comprise cells comprising the isolated nucleic acid of the present invention. Progeny and variants, and mutants of the regenerated plants are also included within the scope of the invention, provided that these parts comprise the introduced nucleic acid sequences. Transgenic plants expressing the selectable marker can be screened for transmission of the nucleic acid of the present invention by, for example, standard immunoblot and DNA detection techniques. Transgenic lines are also typically evaluated on levels of expression of the heterologous nucleic acid. Expression at the RNA level can be determined initially to identify and quantitate expression-positive plants. Standard techniques for RNA analysis can be employed and include PCR amplification assays using oligonucleotide primers designed to amplify only the heterologous RNA templates and solution hybridization assays using heterologous nucleic acid-specific probes. The RNA-positive plants can then analyzed for protein expression by Western immunoblot analysis using the specifically reactive antibodies of the present invention. In addition, in situ hybridization and immunocytochemistry according to standard protocols can be done using heterologous nucleic acid specific polynucleotide probes and antibodies, respectively, to localize sites of expression within transgenic tissue. Generally, a number of transgenic lines are usually screened for the incorporated nucleic acid to identify and select plants with the most appropriate expression profiles.

A preferred embodiment is a transgenic plant that is homozygous for the added heterologous nucleic acid; i.e., a transgenic plant that contains two added nucleic acid sequences, one gene at the same locus on each chromosome of a chromosome pair. A homozygous transgenic plant can be obtained by sexually mating (selfing) a heterozygous transgenic plant that contains a single added heterologous nucleic acid, germinating some of the seed produced and analyzing the resulting plants produced for altered expression of a polynucleotide of the present invention relative to a control plant (i.e., native, non-transgenic). Back-crossing to a parental plant and out-crossing with a non-transgenic plant are also contemplated.

Transformed plant cells which are derived by any of the above transformation techniques can be cultured to regenerate a whole plant which possesses the transformed genotype. Such regeneration techniques often rely on manipulation of certain phytohormones in a tissue culture growth medium. For transformation and regeneration of maize see, Gordon-Kamm et al., 1990, The Plant Cell, 2:603-618.

Plants cells transformed with a plant expression vector can be regenerated, e.g., from single cells, callus tissue or leaf discs according to standard plant tissue culture techniques. It is well known in the art that various cells, tissues, and organs from almost any plant can be successfully cultured to regenerate an entire plant. Plant regeneration from cultured protoplasts is described in Evans et al., 1983, Protoplasts Isolation and Culture, Handbook of Plant Cell Culture, Macmillan Publishing Company, New York, pp. 124-176; and Binding, Regeneration of Plants, Plant Protoplasts, 1985, CRC Press, Boca Raton, pp. 21-73.

The regeneration of plants containing the foreign gene introduced by Agrobacterium from leaf explants can be achieved as described by Horsch et al., 1985, Science, 227:1229-1231. In this procedure, transformants are grown in the presence of a selection agent and in a medium that induces the regeneration of shoots in the plant species being transformed as described by Fraley et al., 1983, Proc. Natl. Acad. Sci. (U.S.A.), 80:4803. This procedure typically produces shoots within two to four weeks and these transformant shoots are then transferred to an appropriate root-inducing medium containing the selective agent and an antibiotic to prevent bacterial growth. Transgenic plants of the present invention may be fertile or sterile.

The regeneration of plants from either single plant protoplasts or various explants is well known in the art. See, for example, Methods for Plant Molecular Biology, A. Weissbach and H. Weissbach, eds., 1988, Academic Press, Inc., San Diego, Calif. This regeneration and growth process includes the steps of selection of transformant cells and shoots, rooting the transformant shoots and growth of the plantlets in soil. For maize cell culture and regeneration see generally, The Maize Handbook, Freeling and Walbot, Eds., 1994, Springer, New York 1994; Corn and Corn Improvement, 3rd edition, Sprague and Dudley Eds., 1988, American Society of Agronomy, Madison, Wis.

6.13 Plants and Plant Cells

Also provided herein are a plant cell having the nucleotide sequence constructs of the invention. A further aspect of the present invention provides a method of making such a plant cell involving introduction of a vector including the construct into a plant cell. For integration of the construct into the plant genome, such introduction will be followed by recombination between the vector and the plant cell genome to introduce the sequence of nucleotides into the genome. RNA encoded by the introduced nucleic acid construct may then be transcribed in the cell and descendants thereof, including cells in plants regenerated from transformed material. A gene stably incorporated into the genome of a plant is passed from generation to generation to descendants of the plant, so such descendants should show the desired phenotype.

In certain embodiments, a plant cell comprises a GLK1 nucleotide sequence operably associated with a vegetative tissue specific promoter, which is optionally a constitutive or inducible promoter. In other embodiments, a plant cell comprises multiple copies of a GLK1 operably associated with a vegetative tissue specific promoter. In specific embodiments provided herein are plants (and plant cells thereof) that overexpress, contitutionally express and/or inducibly express GLK1 in the vegetative tissues of the plant, as compared to other tissues in the plant and/or as compared to a wild type plant.

The present invention also provides a plant comprising a plant cell as disclosed. Transformed seeds and plant parts are also encompassed.

In addition to a plant, the present invention provides any clone of such a plant, seed, selfed or hybrid progeny and descendants, and any part of any of these, such as cuttings, seed. The invention provides any plant propagule, that is any part which may be used in reproduction or propagation, sexual or asexual, including cuttings, seed and so on. Also encompassed by the invention is a plant which is a sexually or asexually propagated off-spring, clone or descendant of such a plant, or any part or propagule of said plant, off-spring, clone or descendant. Plant extracts and derivatives are also provided.

Any species of woody, ornamental or decorative, crop or cereal, fruit or vegetable plant, and algae (e.g., Chlamydomonas reinhardtii) may be used in the compositions and methods provided herein. Non-limiting examples of plants include plants from the genus Arabidopsis or the genus Oryza. Other examples include plants from the genuses Acorus, Aegilops, Allium, Amborella, Antirrhinum, Apium, Arachis, Beta, Betula, Brassica, Capsicum, Ceratopteris, Citrus, Cryptomeria, Cycas, Descurainia, Eschscholzia, Eucalyptus, Glycine, Gossypium, Hedyotis, Helianthus, Hordeum, Ipomoea, Lactuca, Linum, Liriodendron, Lotus, Lupinus, Lycopersicon, Medicago, Mesembryanthemum, Nicotiana, Nuphar, Pennisetum, Persea, Phaseolus, Physcomitrella, Picea, Pinus, Poncirus, Populus, Prunus, Robinia, Rosa, Saccharum, Schedonorus, Secale, Sesamum, Solanum, Sorghum, Stevia, Thellungiella, Theobroma, Triphysaria, Triticum, Vitis, Zea, or Zinnia.

Plants included in the invention are any plants amenable to transformation techniques, including gymnosperms and angiosperms, both monocotyledons and dicotyledons.

Examples of monocotyledonous angiosperms include, but are not limited to, asparagus, field and sweet corn, barley, wheat, rice, sorghum, onion, pearl millet, rye and oats and other cereal grains.

Examples of dicotyledonous angiosperms include, but are not limited to tomato, tobacco, cotton, rapeseed, field beans, soybeans, peppers, lettuce, peas, alfalfa, clover, cole crops or Brassica oleracea (e.g., cabbage, broccoli, cauliflower, brussel sprouts), radish, carrot, beets, eggplant, spinach, cucumber, squash, melons, cantaloupe, sunflowers and various ornamentals.

Examples of woody species include poplar, pine, sequoia, cedar, oak, etc.

Still other examples of plants include, but are not limited to, wheat, cauliflower, tomato, tobacco, corn, petunia, trees, etc.

In certain embodiments, plants of the present invention are crop plants (for example, cereals and pulses, maize, wheat, potatoes, tapioca, rice, sorghum, millet, cassaya, barley, pea, and other root, tuber, or seed crops. Exemplary cereal crops used in the compositions and methods of the invention include, but are not limited to, any species of grass, or grain plant (e.g., barley, corn, oats, rice, wild rice, rye, wheat, millet, sorghum, triticale, etc.), non-grass plants (e.g., buckwheat flax, legumes or soybeans, etc.). Grain plants that provide seeds of interest include oil-seed plants and leguminous plants. Other seeds of interest include grain seeds, such as corn, wheat, barley, rice, sorghum, rye, etc. Oil seed plants include cotton, soybean, safflower, sunflower, Brassica, maize, alfalfa, palm, coconut, etc. Other important seed crops are oil-seed rape, sugar beet, maize, sunflower, soybean, and sorghum. Leguminous plants include beans and peas. Beans include guar, locust bean, fenugreek, soybean, garden beans, cowpea, mungbean, lima bean, fava bean, lentils, chickpea, etc.

Horticultural plants to which the present invention may be applied may include lettuce, endive, and vegetable brassicas including cabbage, broccoli, and cauliflower, and carnations and geraniums. The present invention may also be applied to tobacco, cucurbits, carrot, strawberry, sunflower, tomato, pepper, chrysanthemum, poplar, eucalyptus, and pine.

The present invention may be used for transformation of other plant species, including, but not limited to, corn (Zea mays), canola (Brassica napus, Brassica rapa ssp.), alfalfa (Medicago sativa), rice (Oryza sativa), rye (Secale cereale), sorghum (Sorghum bicolor, Sorghum vulgare), sunflower (Helianthus annuus), wheat (Triticum aestivum), soybean (Glycine max), tobacco (Nicotiana tabacum, Nicotiana benthamiana), potato (Solanum tuberosum), peanuts (Arachis hypogaea), cotton (Gossypium hirsutum), sweet potato (Ipomoea batatus), cassaya (Manihot esculenta), coffee (Coffea spp.), coconut (Cocos nucifera), pineapple (Ananas comosus), citrus trees (Citrus spp.), cocoa (Theobroma cacao), tea (Camellia sinensis), banana (Musa spp.), avocado (Persea americana), fig (Ficus casica), guava (Psidium guajava), mango (Mangifera indica), olive (Olea europaea), papaya (Carica papaya), cashew (Anacardium occidentale), macadamia (Macadamia integrifolia), almond (Prunus amygdalus), sugar beets (Beta vulgaris), oats, barley, Arabidopsis spp., vegetables, ornamentals, and conifers.

6.14 Cultivation

Methods of cultivation of plants are well known in the art. For example, for the cultivation of wheat see Alcoz et al., 1993, Agronomy Journal 85:1198-1203; Rao and Dao, 1992, J. Am. Soc. Agronomy 84:1028-1032; Howard and Lessman, 1991, Agronomy Journal 83:208-211; for the cultivation of corn see Tollenear et al., 1993, Agronomy Journal 85:251-255; Straw et al., Tennessee Farm and Home Science: Progress Report, Spring 1993, 166:20-24; Miles, S. R., 1934, J. Am. Soc. Agronomy 26:129-137; Dara et al., 1992, J. Am. Soc. Agronomy 84:1006-1010; Binford et al., 1992, Agronomy Journal 84:53-59; for the cultivation of soybean see Chen et al., 1992, Canadian Journal of Plant Science 72:1049-1056; Wallace et al., 1990, Journal of Plant Nutrition 13:1523-1537; for the cultivation of rice see Oritani and Yoshida, 1984, Japanese Journal of Crop Science 53:204-212; for the cultivation of linseed see Diepenbrock and Porksen, 1992, Industrial Crops and Products 1:165-173; for the cultivation of tomato see Grubinger et al., 1993, Journal of the American Society for Horticultural Science 118:212-216; Cerne, M., 1990, Acta Horticulture 277:179-182; for the cultivation of pineapple see Magistad et al., 1932, J. Am. Soc. Agronomy 24:610-622; Asoegwu, S, N., 1988, Fertilizer Research 15:203-210; Asoegwu, S, N., 1987, Fruits 42:505-509; for the cultivation of lettuce see Richardson and Hardgrave, 1992, Journal of the Science of Food and Agriculture 59:345-349; for the cultivation of mint see Munsi, P. S., 1992, Acta Horticulturae 306:436-443; for the cultivation of camomile see Letchamo, W., 1992, Acta Horticulturae 306:375-384; for the cultivation of tobacco see Sisson et al., 1991, Crop Science 31:1615-1620; for the cultivation of potato see Porter and Sisson, 1991, American Potato Journal, 68:493-505; for the cultivation of brassica crops see Rahn et al., 1992, Conference “Proceedings, second congress of the European Society for Agronomy” Warwick Univ., p. 424-425; for the cultivation of banana see Hegde and Srinivas, 1991, Tropical Agriculture 68:331-334; Langenegger and Smith, 1988, Fruits 43:639-643; for the cultivation of strawberries see Human and Kotze, 1990, Communications in Soil Science and Plant Analysis 21:771-782; for the cultivation of songhum see Mahalle and Seth, 1989, Indian Journal of Agricultural Sciences 59:395-397; for the cultivation of plantain see Anjorin and Obigbesan, 1985, Conference “International Cooperation for Effective Plantain and Banana Research” Proceedings of the third meeting. Abidjan, Ivory Coast, p. 115-117; for the cultivation of sugar cane see Yadav, R. L., 1986, Fertiliser News 31:17-22; Yadav and Sharma, 1983, Indian Journal of Agricultural Sciences 53:38-43; for the cultivation of sugar beet see Draycott et al., 1983, Conference “Symposium Nitrogen and Sugar Beet” International Institute for Sugar Beet Research—Brussels Belgium, p. 293-303. See also Goh and Haynes, 1986, “Nitrogen and Agronomic Practice” in Mineral Nitrogen in the Plant-Soil System, Academic Press, Inc., Orlando, Fla., p. 379-468; Engelstad, O. P., 1985, Fertilizer Technology and Use, Third Edition, Soil Science Society of America, p. 633; Yadav and Sharmna, 1983, Indian Journal of Agricultural Sciences, 53:3-43.

6.15 Products of Transgenic Plants

Engineered plants exhibiting the desired physiological and/or agronomic changes can be used directly in agricultural production.

Thus, provided herein are products derived from the transgenic plants or methods of producing transgenic plants provided herein. In certain embodiments, the products are commercial products. Some non-limiting example include genetically engineered trees for e.g., the production of pulp, paper, paper products or lumber; tobacco, e.g., for the production of cigarettes, cigars, or chewing tobacco; crops, e.g., for the production of fruits, vegetables and other food, including grains, e.g., for the production of wheat, bread, flour, rice, corn; and canola, sunflower, e.g., for the production of oils or biofuels.

In certain embodiments, commercial products are derived from a genetically engineered (e.g., comprising overexpression of GLK1 in the vegetative tissues of the plant) species of woody, ornamental or decorative, crop or cereal, fruit or vegetable plant, and algae (e.g., Chlamydomonas reinhardtii), which may be used in the compositions and methods provided herein. Non-limiting examples of plants include plants from the genus Arabidopsis or the genus Oryza. Other examples include plants from the genuses Acorus, Aegilops, Allium, Amborella, Antirrhinum, Apium, Arachis, Beta, Betula, Brassica, Capsicum, Ceratopteris, Citrus, Cryptomeria, Cycas, Descurainia, Eschscholzia, Eucalyptus, Glycine, Gossypium, Hedyotis, Helianthus, Hordeum, Ipomoea, Lactuca, Linum, Liriodendron, Lotus, Lupinus, Lycopersicon, Medicago, Mesembryanthemum, Nicotiana, Nuphar, Pennisetum, Peryea, Phaseolus, Physcomitrella, Picea, Pinus, Poncirus, Populus, Prunus, Robinia, Rosa, Saccharum, Schedonorus, Secale, Sesamum, Solanum, Sorghum, Stevia, Thellungiella, Theobroma, Triphysaria, Triticum, Vitis, Zea, or Zinnia.

In some embodiments, commercial products are derived from a genetically engineered gymnosperms and angiosperms, both monocotyledons and dicotyledons. Examples of monocotyledonous angiosperms include, but are not limited to, asparagus, field and sweet corn, barley, wheat, rice, sorghum, onion, pearl millet, rye and oats and other cereal grains. Examples of dicotyledonous angiosperms include, but are not limited to tomato, tobacco, cotton, rapeseed, field beans, soybeans, peppers, lettuce, peas, alfalfa, clover, cole crops or Brassica oleracea (e.g., cabbage, broccoli, cauliflower, brussel sprouts), radish, carrot, beets, eggplant, spinach, cucumber, squash, melons, cantaloupe, sunflowers and various ornamentals.

In certain embodiments, commercial products are derived from a genetically engineered (e.g., comprising overexpression of bZIP1 in the leaves or seeds of the plant) woody species, such as poplar, pine, sequoia, cedar, oak, etc.

In other embodiments, commercial products are derived from a genetically engineered (e.g., comprising overexpression of CCA1 and GLK1 in the vegetative tissues of the plant) plant including, but are not limited to, wheat, cauliflower, tomato, tobacco, corn, petunia, trees, etc.

In certain embodiments, commercial products are derived from a genetically engineered crop plants, for example, cereals and pulses, maize, wheat, potatoes, tapioca, rice, sorghum, millet, cassaya, barley, pea, and other root, tuber, or seed crops. In one embodiment, commercial products are derived from a genetically engineered (e.g., comprising overexpression of CCA1 and GLK1 and underexpression of bZIP1 in the vegetative tissues of the plant) cereal crops, including, but are not limited to, any species of grass, or grain plant (e.g., barley, corn, oats, rice, wild rice, rye, wheat, millet, sorghum, triticale, etc.), non-grass plants (e.g., buckwheat flax, legumes or soybeans, etc.). In another embodiments, commercial products are derived from a genetically engineered (e.g., comprising overexpression of bZIP1 and optionally underexpression of CCA1 and/or GLK1 in leaf or seed tissue of the plant) grain plants that provide seeds of interest, oil-seed plants and leguminous plants. In other embodiments, commercial products are derived from a genetically engineered grain seed plants, such as corn, wheat, barley, rice, sorghum, rye, etc. In yet other embodiments, commercial products are derived from a genetically engineered (e.g., comprising overexpression of bZIP1 and optionally underexpression of CCA1 and/or GLK1 in leaf or seed tissue of the plant) oil seed plants, such as cotton, soybean, safflower, sunflower, Brassica, maize, alfalfa, palm, coconut, etc. In certain embodiments, commercial products are derived from a genetically engineered oil-seed rape, sugar beet, maize, sunflower, soybean, or sorghum. In some embodiments, commercial products are derived from a genetically engineered leguminous plants, such as beans and peas (e.g., guar, locust bean, fenugreek, soybean, garden beans, cowpea, mungbean, lima bean, fava bean, lentils, chickpea, etc.)

In certain embodiments, commercial products are derived from a genetically engineered horticultural plant of the present invention, such as lettuce, endive, and vegetable brassicas including cabbage, broccoli, and cauliflower, and carnations and geraniums; tomato, tobacco, cucurbits, carrot, strawberry, sunflower, tomato, pepper, chrysanthemum, poplar, eucalyptus, and pine.

In still other embodiments, commercial products are derived from a genetically engineered corn (Zea mays), canola (Brassica napus, Brassica rapa ssp.), alfalfa (Medicago sativa), rice (Oryza sativa), rye (Secale cereale), sorghum (Sorghum bicolor, Sorghum vulgare), sunflower (Helianthus annuus), wheat (Triticum aestivum), soybean (Glycine max), tobacco (Nicotiana tabacum, Nicotiana benthamiana), potato (Solanum tuberosum), peanuts (Arachis hypogaea), cotton (Gossypium hirsutum), sweet potato (Ipomoea batatus), cassaya (Manihot esculenta), coffee (Coffea spp.), coconut (Cocos nucifera), pineapple (Ananas comosus), citrus trees (Citrus spp.), cocoa (Theobroma cacao), tea (Camellia sinensis), banana (Musa spp.), avocado (Peryea americana), fig (Ficus casica), guava (Psidium guajava), mango (Mangifera indica), olive (Olea europaea), papaya (Carica papaya), cashew (Anacardium occidentale), macadamia (Macadamia integrifolia), almond (Prunus amygdalus), sugar beets (Beta vulgaris), oats, barley, Arabidopsis spp., vegetables, ornamentals, and conifers.

6.16 Kits

In one aspect, the present invention provides any of the above-mentioned compositions in kits, optionally including instructions for use of the composition e.g., for the overexpression or underexpression of CCA1, GLK1 or bZIP1. The “kit” typically defines a package including one or more compositions of the invention and the instructions, and/or analogs, derivatives, or functionally equivalent compositions thereof. Thus, for example, the kit can include a description of use of the composition for participation in any technique associated in the overexpression or underexpression of genes. The kit can include a description of use of the compositions as discussed herein. Instructions also may be provided for use of the composition in any suitable technique as previously described. The instructions may be of any form provided in connection with the composition.

The kits described herein may also contain one or more containers, which may contain the inventive composition and other ingredients as previously described. The kits also may contain instructions for mixing, diluting, and/or administrating the compositions in some cases. The kits also can include other containers with one or more solvents, surfactants, preservative and/or diluents (e.g., normal saline (0.9% NaCl), or 5% dextrose) as well as containers for mixing, diluting and/or administrating the compositions.

The compositions of the kit may be provided as any suitable form, for example, as liquid solutions or as dried powders. When the composition provided is a dry powder, the composition may be reconstituted by the addition of a suitable solvent, which may also be provided. In embodiments where liquid forms of the composition are used, the liquid form may be concentrated or ready to use. The solvent will depend on the active compound(s) within the composition. Suitable solvents are well known, for example as previously described, and are available in the literature.

The invention also involves, in another aspect, promotion of the overexpression of a master regulatory gene of the present invention, e.g., CCA1/GLK1/bZIP1, according to any of the systems or methods described herein. As used herein, “promoted” includes all methods of doing business including methods of education, hospital and other clinical instruction, pharmaceutical industry activity including pharmaceutical sales, and any advertising or other promotional activity including written, oral and electronic communication of any form, associated with compositions of the invention. “Instructions” can define a component of promotion, and typically involve written instructions on or associated with packaging of compositions of the invention. Instructions also can include any oral or electronic instructions provided in any manner.

7. EXAMPLE 7.1 Introduction

Nitrogen (N) is an essential nutrient and a metabolic signal that is sensed and transduced resulting in the control of gene expression in plants. Studies using nitrate reductase (NR) mutant plants, have shown that nitrate can serve as a metabolic signal for inorganic N that regulates gene expression in Arabidopsis thaliana and other plant species (Wang et al., 2004, Plant Physiol 136:2512-2522; Wang et al., 2003, Plant Physiol 132:556-567; Forde, 2002, Ann. Rev. Plant Biology 53:203-224; Scheible, et al., 2004, Plant Physiol 136:2483-2499). There is also ample though less direct evidence that the assimilated forms of N such as Glu or Gln may also serve as signals that regulate gene expression in plants (Rawat et al., 1999, Plant J 19:143-152; Oliveira et al., 1999, Plant Physiol 121:301-310). The ability of plants to sense and respond to levels of inorganic and organic N metabolites provides a mechanism to balance the availability of organic N resources within the plant with the need for N uptake. Because nitrate uptake, reduction and its assimilation into organic form require energy, a mechanism that activates this N assimilatory pathway based on sensing levels of organic N available in the plant is an efficient way to control N-use efficiency (Forde, 2002, Ann. Rev. Plant Biology 53:203-224). In plants, the transcription of genes involved in the uptake and assimilation of inorganic N is induced when levels of organic N are low. Conversely, the uptake and reduction of inorganic N are shut off when levels of organic N are high (reviewed in Scheible, et al., 1997, Plant Cell 9:783-798).

Recent microarray studies have shown that nitrate can cause changes in the expression of a large number of genes in Arabidopsis (Wang et al., 2004, Plant Physiol 136:2512-2522; Wang et al., 2003, Plant Physiol 132:556-567). Treatment of Arabidopsis seedlings with low levels of nitrate has been shown to increase the levels of mRNA for hundreds of genes within minutes of exposure. The nitrate-responsive genes include nitrate transporters, NR and nitrite reductase, putative transcription factors, stress responses genes, as well as genes whose products play roles in glycolysis, iron metabolism, and sulfate uptake (Wang et al., 2004, Plant Physiol 136:2512-2522; Wang et al., 2003, Plant Physiol 132:556-567). In a related study, N-starved plants underwent a transcriptome/metabolome analysis 30 min and 3 h after nitrate treatment (Scheible, et al., 2004, Plant Physiol 136:2483-2499). The expression of nitrate transporters (at 30 min) preceded the induction of amino acid biosynthetic genes and the repression of amino acid breakdown genes (at 3 h). In addition, increases in amino acid levels were observed, consistent with the changes in expression of the cognate amino acid biosynthesis genes. Putative nitrate-responsive regulatory factors including transcription factors, protein kinases/phosphatases and trehalose and hormone metabolic genes were also identified in that study. Recently, using a NR-null mutant, it was shown that nitrate and not a product of nitrate reduction and assimilation, regulates the expression of genes involved in energy production, metabolism, glycolysis and gluconeogenesis (Wang et al., 2004, Plant Physiol 136:2512-2522).

Nitrogen metabolism genes can be regulated by negative feedback of the products of N assimilation including downstream organic N metabolites such as Glu or Gln. For example, the expression of the ammonium transporter gene ammonium transporter 1 (AMT1.1) is repressed in treatments with high levels of inorganic N. It has been shown that this repression is blocked by methionine sulfoximine (MSX), a non-metabolizable analog of Glu that irreversibly inhibits glutamine synthetase and hence blocks N assimilation into Gln (Rawat et al., 1999, Plant J 19:143-152). Thus, it appears that organic forms of N may regulate the uptake of N in plants. In addition, the genes encoding asparagine synthetase 1 (ASN1) and 2 (ASN2), are differentially regulated by organic and inorganic N sources. Organic N treatments were shown to positively regulate levels of ASN1 mRNA (Oliveira et al., 1999, Plant Physiol 121:301-310), whereas ASN2 gene expression appears to be responsive to inorganic N sources and not a downstream metabolite (Wang et al., 2004, Plant Physiol 136:2512-2522). Together, these studies prompt a model in which both inorganic as well as organic N sources can each regulate plant gene expression affecting N uptake, reduction and assimilation.

In study presented below, a genomic approach was used to identify gene networks whose expression is regulated by Glu or Glu-derived metabolites (organic N) in plants. Plants were treated with inorganic nitrogen sources in the presence or absence of MSX, which served to inhibit the assimilation of ammonium into Glu/Gln by blocking glutamine synthetase. The rationale for this approach was that a subset of nitrogen-responsive genes responding specifically to an organic signal (e.g. Glu/Gln) would not respond to nitrogen treatment if the synthesis of Glu/Gln was blocked by transient MSX treatments. Network analysis of the genes that responded to organic N revealed that transcription control of gene expression is important for a subnetwork of metabolic genes involved in the synthesis and degradation of asparagine (Asn), an important nitrogen-transport/storage compound synthesized when levels of nitrogen are abundant and degraded when nitrogen reserves are mobilized. The metabolic gene network discovered in this analysis provides molecular evidence for regulation of N-use at the level of gene expression. Moreover, the transcription factors regulated by organic N associated with this network provide a mechanistic link between circadian clock function and N-assimilation in plants.

7.2 Materials and Methods

Plant growth conditions. Wild type Arabidopsis thaliana ecotype Columbia-0 strain was used in all experiments unless indicated otherwise. Seeds were surface sterilized with ethanol and bleach as previously described (Brenner et al., 2000, Plant Physiol. 124:1615-1624) and sowed onto basal MS salts (Sigma, St Louis, Mo.) with 0.5% (w/v) sucrose, 0.8% BactoAgar, and 1 mM KNO₃. After 14 days under long day (16 hours light: 8 hours dark) at 22° C., plants were transiently treated for 2 h in the light at the start of their light cycle by transferring them to basal medium with 0.5% sucrose and a combination of inorganic nitrogen sources (20 mM KNO₃ and 20 mM NH₄NO₃) with or without 1 mM MSX (Sigma M-5379), 10 mM glutamate (Sigma G-1501) and/or 10 mM glutamine (Sigma G-3126): N; N+MSX; N+MSX+Glu respectively.

RNA isolation and quantitative real time PCR. RNA was isolated from whole plants with the TRIzol reagent and according to the instructions of the manufacturer (InVitrogen, Carlsbad, Calif.). cDNA synthesis from whole mRNA extractions was carried out according to kit manufacturer instructions (Invitrogen, Catalog number 11146-024). Real time quantitative PCR was carried out with a LightCycler (Roche Diagnostics, Mannheim, Germany) as described previously (Thum, K. E., Shasha, D. E., Lejay, L. V. & Coruzzi, G. M. (2003) Plant Physiol 132, 440-52).

Microarray experiments and analysis. cDNA synthesis, array hybridization, and normalization of the signal intensities were performed according to the instructions provided by Affymetrix (Santa Clara, Calif.). All raw microarray data was processed with MASv5.0 software as follows. Each hybridization was normalized to a median intensity of 150. Each treatment replica was compared with the two baselines to generate 4 comparisons per treatment. Data points with absent/marginal calls (Affymetrix quality control) in both baseline and treatment were removed. Data points with absent call in one hybridization and present call in the other hybridization were eliminated if the probe called present had a signal intensity of <100. The response of each gene was summarized using the Affymetrix change calls “I” for induced, “D” for decreased and “NC” for not changed. Data points were considered only if the change calls were consistent in at least 3 out of the 4 comparisons. This stepwise filtering resulted in a set of 834 genes that were detected and responded consistently in our experiments. We used custom made S-PLUS and PERL functions to analyze and visualize groups of genes with similar expression patterns based on the Affymetrix change calls.

Network analysis. For network analysis, an existing network model of plant gene interactions was used (Gutierrez, R. A., Lejay, L. V., Dean, A., Chiaromonte, F., Shasha, D. E. & Coruzzi, G. M. (2007) Genome Biol. 8(1):R7). In addition, protein:DNA interactions were predicted based as follows: The consensus sequence for transcription binding sites from well curated databases DATF (Guo, A., He, K., Liu, D., Bai, S., Gu, X., Wei, L. & Luo, J. (2005) Bioinformatics 21, 2568-2569) and AGRIS (Davuluri, R., Sun, H., Palaniswamy, S., Matthews, N., Molina, C., Kurtz, M. & Grotewold, E. (2003) BMC Bioinformatics 4, 25) were searched in 1500 base pairs of upstream sequence using the DNA pattern search tool from the RSA tools server with default parameters (van Helden, J. (2003) Nucleic Acids Res 31, 3593-3596). The search was performed in both strands of DNA, the upstream region was not allowed to overlap with the coding region of the upstream gene, motif matches were not allowed to overlap. A motif was considered over-represented if it was present in an upstream sequence more than 3 times the standard deviation above the mean occurrence in all the upstream sequences in the genome. A protein:DNA interaction was predicted when the upstream sequence of the gene contained an over representation of the regulatory motif for that transcription factor and the expression of the transcription factor and putative target gene was highly (≧0.7 or ≦−0.7) and significantly (p≦0.01) correlated. Similar regulatory predictions for other microarray data sets can be generated with the VirtualPlant system (http://www.virtualplant.org) using the “Gene Networks” tool.

Chromatin immunoprecipitation assays (ChIP): Immunoprecipitations (IP) were performed as previously described (Gendrel, A., Lippman, Z., Martienssen, R. A. & Colot, V. (2005) Profiling histone modification patterns in plants using genomic tiling microarrays Nat Methods 2, 219-224). Briefly, two weeks old wild-type and CCA1-ox plants were collected at the beginning of the light cycle and immediately fixed in 1% formaldehyde for 15 min in a vacuum at room temperature. Crosslinking was stopped by the addition of glycine to a final concentration of 0.125 M. Nuclei were prepared for chromatin isolation. The isolated chromatin was sonicated ten times for 20 s each at 100% power (Diagenode Bioruptor) in an ice water bath. A small aliquot of sheared chromatin was removed to serve as control. The diluted chromatin was used for IP with the CCA1 antibody and one control IP without antibody. The primer sequences used for amplification of the CCA1 binding sites in each of the genes tested are listed in Table 1.

TABLE 1 Gene PUB locus Primer 1 Primer 2 bZIP1 At5g49450 5′-GATCGAAAATAAGGAAAGTGGG-3′ 5′-ACTGGTCACCTATTAAGGAAC-3′ (SEQ ID NO: 5) (SEQ ID NO: 6) TOC1 At5g61380 5′-TGGACGGTGGAGATTAAGTC-3′ 5′-ACGAAACGAAGCCGAATCCT-3′ (SEQ ID NO: 7) (SEQ ID NO: 8) ZTL At5g57360 5′-AGTCGCCGGAGATTATGAAGACGG- 5′-GGTTTTATCTACTTGACCCGACAG-3′ 3′ (SEQ ID NO: 9) (SEQ ID NO: 10) GDH1 At5g18170 5′-TGTTTCAATAGCATTAGCCTCCA-3′ 5′-TGGGGAATGTGACACACATAATC-3′ (SEQ ID NO: 11) (SEQ ID NO: 12) GLN1.3 At3g17820 5′-TTGAATCCGAAGAGGGGAAAA-3′ 5′-AACAACTGCTACCAATTTCCTTG-3′ (SEQ ID NO: 13) (SEQ ID NO: 14)

PCR amplifications included 95° C. for 2 min followed by 36 cycles of 95° C. for 15 s, 58° C. (for bZIP1, TOC1 and GDH1) or 60° C. (for ZTL and GLN1.3) for 30 s and 72° C. for 30 s.

Circadian phase response curves: CCA1::LUC seedlings were entrained on MS basal medium plus 0.5% sucrose and 1 mM KNO₃ for 8 d in 16/8 h light/dark (100-150 μmol m⁻2 s⁻1), after which seedlings were moved into continuous light. At 3-hr intervals, seedlings (n=16 per treatment) were transferred to fresh solid medium plus 2 mL liquid Nms or medium containing 10 mM Glu or 10 mM Gln for 4 hr, then rinsed in liquid entrainment medium 3 times for a total of 30 min and transferred individually to the wells of 96-well microtiter plates containing fresh solid media for luciferase activity measurements which were determined with a Packard TopCount scintillation counter as described (Salome, P. A., et al. (2002) The out of phase 1 mutant defines a role for PHYB in circadian phase control in Arabidopsis Plant Physiol 129, 1674-85). The period and phase of rhythms after the pulses were determined by fast-Fourier transform nonlinear least-square analysis (Plautz, J. D., et al. (1997) Quantitative analysis of Drosophila period gene transcription in living animals J Biol Rhythms 12, 204-17). The phase shifts were calculated as described (Covington, M. F., et al. (2001) ELF3 modulates resetting of the circadian clock in Arabidopsis Plant Cell 13, 1305-15).

7.3 Results

Inorganic versus organic N responses. To uncouple gene responses to inorganic N from those elicited by downstream products of inorganic N assimilation, treatments of Arabidopsis seedlings with combinations of inorganic N (nitrate and ammonium), organic forms of N (e.g., Glu, Gln), and MSX, an inhibitor of glutamine synthetase were performed (King et al., 1993, Plant Pysiol. 102:1279-1286) (FIG. 7). Genes regulated by inorganic N signals should be unaffected by MSX treatment. By contrast, genes responding to a downstream organic N signal should fail to show induction by inorganic N treatments if Glu/Gln synthesis is blocked by MSX. This block of induction by MSX should be relieved by Glu treatment. Following this rationale, two-week-old Arabidopsis seedlings grown on low concentrations of N (1 mM NO₃ ⁻) were transferred to media containing 40 mM NO₃ ⁻ and 20 mM NH₄ ⁺ (referred to as “Nms”). Seedlings were then harvested after a 2 h treatment time. This treatment was carried out alone (Nms), in the presence of 1 mM MSX (Nms+MSX) or 1 mM MSX and 10 mM Glu (Nms+MSX+Glu). The Nms treatment consists of the same N source found in standard MS salts which is the established standard amount of N for plant growth (Murashige et al., 1962, Plant Physiol. 15:473-497). A concentration of 1 mM MSX has previously been established as effective in blocking the N repression of AMT1.1 in Arabidopsis seedlings and in decreasing levels of internal organic N (Rawat et al., 1999, Plant J 19:143-152). A concentration of 10 mM for Glu treatments was chosen because this has been shown to be effective in the regulation of N assimilatory genes while not being high enough to be detrimental to plant growth or development (Oliveria et al., 1999, Plant Physiol. 121-301-310). To evaluate the effect of MSX alone, plants were exposed to growth media that contained MSX. To control for the effect of the plant transfer to distinct media, plants were transferred onto media plates without any of the treatment factors. This latter control was used as the base line for the microarray experiments described below.

To evaluate the experimental design, the mRNA level of genes shown to be responsive to organic N (ASN1) or inorganic N (ASN2) was determined by reverse transcription followed by real time quantitative PCR(RT-qPCR). This analysis showed that the ASN1 mRNA level was induced 3.5-fold by the Nms treatment as compared to the control (FIG. 8, compare Nms versus the control). This induction of ASN1 mRNA was blocked when MSX was present (FIG. 8A, Nms+MSX versus Nms). Importantly, when exogenous Glu or Gln was added, ASN1 levels were induced regardless of the presence of MSX (FIG. 8A, compare Control to Nms+MSX+Glu and Nms+MSX+Gln). These results indicate that the induction of ASN1 is due to Glu or a downstream metabolite, as shown previously (Lam et al., 1998, Plant J 16:345-353; Oliveira et al., 2001, Braz J Med Biol Res 34:567-575). In addition, the control treatments showed that MSX alone does not induce expression of ASN1 or ASN2 (FIG. 8). The addition of Glu or Gln partially blocked the induction of ASN2 by the Nms treatment (FIG. 8B), consistent with the negative regulation by amino acids seen previously (Lam et al., 1998, Plant J 16:345-353). Conversely, the induction of ASN2 mRNA by Nms was insensitive to MSX addition (FIG. 8B), suggesting the induction was mediated by an inorganic N source. This finding was consistent with previous data which indicates that ASN2 gene expression correlates with ammonium levels (Wong et al., 2004, Plant Physiol 134:332-812).

Global genomic responses to organic and inorganic nitrogen signals. To investigate global gene expression changes that are mediated by Glu or a Glu-derived metabolite, the plant transcriptome was monitored using the ATH1 Affymetrix gene chip. Total RNA was extracted from plants treated with Nms, Nms+MSX or Nms+MSX+Glu as described above; two biological replicates per treatment were performed. The Nms+MSX+Gln treatments were not analyzed using microarrays because Gln and Glu responses were similar in our hands (FIG. 8). RNA was labeled and hybridized to the microarrays, the raw intensity values were normalized and the data filtered as described in Materials and Methods. A gene was kept in the data set only if its expression was reproducible and reliable across the 3 different treatments (Nms, Nms+MSX, Nms+MSX+Glu). A total of 5,904 genes were identified that passed these stringent quality control criteria. In order to verify the microarray results, we analyzed the mRNA levels of selected genes by RT-qPCR including the TAZ zinc binding (At4g37610) and bZIP (At5g49450) transcription factors with results similar to the microarray data (FIG. 9). As expected, the genomic experiments verified the previous observation that AMT1.1 and ASN1 are regulated by organic N. In addition, the results identified additional genes regulated by organic N as described below.

Genes were categorized based on their response to the treatments using the Affymetrix change calls: induced (I), no change (NC) or decreased (D). Each gene was assigned a three-part code (e.g. I-NC-I) which corresponds to the gene expression response in the Nms, Nms+MSX, and Nms+MSX+Glu treatments respectively. 21 unique patterns of response were found (See Annex) and Table 2 (in each column the gene listed on the left is predicted to control the expression of the gene on the right, i.e., At1g74840 is predicted to control the expression of At2g47060, At5g24800 is predicted to control the expression of At5g13930).

TABLE 2 At1g74840 reg0.9 At2g47060 At5g24800 reg0.7 At5g13930 At5g14540 reg0.9 At5g53370 At5g48655 reg0.8 At5g53370 At3g61150 reg0.7 At4g30810 At1g74840 reg0.8 At5g01820 At2g46830 reg0.8 At5g01820 At5g24800 reg0.8 At2g30040 At5g48655 reg0.7 At2g30040 At2g33710 reg0.8 At2g30040 At4g17490 reg0.8 At2g30040 At2g46830 reg0.7 At2g30040 At5g44190 reg0.8 At2g30040 At1g74840 reg0.7 At4g28100 At2g20570 reg0.8 At4g28100 At1g22070 reg0.7 At4g33300 At2g46830 reg0.7 At1g06000 At5g48655 reg0.9 At5g11790 At1g74840 reg0.8 At4g36640 At1g22070 reg0.8 At4g19810 At5g24800 reg0.9 At4g19810 At5g49450 reg0.9 At2g39980 At3g01560 reg0.7 At2g15970 At1g43160 reg0.9 At2g15970 At1g22070 reg0.7 At2g15970 At2g20570 reg0.7 At2g22240 At5g49450 reg0.8 At1g49500 At2g20570 reg0.8 At1g27730 At2g46830 reg0.9 At1g27730 At4g37260 reg0.7 At3g04070 At5g24800 reg0.8 At2g36290 At5g48655 reg0.7 At5g63790 At5g48655 reg0.7 At4g28250 At2g04880 reg0.9 At5g45340 At2g25000 reg0.7 At5g45340 At2g38470 reg1.0 At5g45340 At5g44190 reg0.8 At1g29670 At5g14540 reg0.7 At1g70330 At1g53910 reg0.7 At1g70330 At5g14540 reg0.8 At3g58560 At2g22430 reg0.8 At2g30870 At5g47230 reg0.7 At2g30870 At5g61890 reg0.7 At2g30870 At2g22430 reg0.8 At2g35930 At2g38470 reg0.7 At1g33590 At3g01560 reg0.7 At5g06320 At5g14540 reg0.7 At5g06320 At3g61150 reg0.7 At2g44210 At5g49450 reg1.0 At2g44080 At3g61890 reg0.7 At5g60850 At1g22070 reg0.7 At3g59220 At2g20570 reg0.7 At1g60780 At1g43160 reg0.7 At1g74840 At5g61890 reg0.8 At1g74840 At5g49450 reg0.9 At4g27410 At5g14540 reg0.8 At2g40270 At4g37260 reg0.7 At1g77510 At5g14540 reg0.8 At4g33400 At1g74840 reg0.7 At4g36250 At3g61890 reg0.9 At5g05600 At1g74840 reg0.9 At1g53310 At2g22430 reg0.7 At4g14960 At1g43160 reg0.9 At5g15960 At5g61890 reg0.9 At5g15960 At2g22430 reg0.8 At3g23750 At1g53910 reg0.8 At3g23750 At5g61890 reg0.8 At3g19680 At3g01560 reg0.8 At2g47180 At1g43160 reg0.7 At2g47180 At5g47230 reg0.8 At2g47180 At5g61890 reg0.7 At2g47180 At2g22430 reg0.7 At5g01540 At5g14540 reg0.7 At2g39530 At5g48655 reg0.8 At2g39530 At2g33710 reg0.8 At2g39530 At1g74840 reg0.9 At1g51680 At1g22070 reg0.8 At4g39330 At5g24800 reg0.7 At4g39330 At1g53910 reg0.9 At4g03260 At5g14540 reg0.8 At1g76670 At2g22430 reg0.7 At1g76670 At3g61150 reg0.7 At1g76670 At5g24800 reg0.9 At5g02270 At2g20570 reg0.8 At5g35735 At5g61890 reg0.8 At3g47960 At1g74840 reg0.8 At3g21230 At2g04880 reg0.8 At4g31500 At4g31800 reg0.7 At4g31500 At3g61150 reg0.8 At5g63850 At3g01560 reg0.7 At2g46600 At4g37260 reg0.9 At1g10760 At1g74840 reg0.8 At3g54640 At5g49450 reg0.7 At1g76590 At1g25560 reg0.7 At1g76590 At1g68840 reg0.8 At1g76590 At5g24800 reg0.7 At5g44190 At1g74840 reg0.9 At5g60920 At5g14540 reg0.8 At5g60920 At1g25560 reg0.8 At4g38470 At1g68840 reg0.7 At4g38470 At2g20570 reg0.8 At2g37430 At2g46830 reg0.9 At2g37430 At2g04880 reg0.8 At2g37430 At2g25000 reg0.8 At2g37430 At2g30250 reg0.7 At2g37430 At2g38470 reg0.9 At2g37430 At4g01250 reg0.7 At2g37430 At2g20570 reg0.9 At1g74460 At2g46830 reg0.8 At1g74460 At1g22070 reg0.7 At4g23630 At3g01560 reg0.9 At3g14280 At5g14540 reg0.7 At3g14280 At3g61150 reg0.7 At3g14280 At2g20570 reg0.7 At3g14280 At2g46830 reg0.8 At3g14280 At2g04880 reg0.8 At5g44070 At2g38470 reg0.9 At5g44070 At4g01250 reg0.7 At5g44070 At5g24800 reg0.7 At1g73080 At2g33710 reg0.9 At3g56710 At4g17490 reg0.9 At3g56710 At2g20570 reg0.8 At3g56710 At2g46830 reg0.8 At3g56710 At1g74840 reg0.8 At2g30490 At3g01560 reg0.7 At2g42540 At1g43160 reg0.9 At2g42540 At5g61890 reg0.8 At2g42540 At1g74840 reg0.7 At1g47128 At2g46830 reg0.7 At1g47128 At5g24800 reg0.7 At4g11280 At2g20570 reg0.7 At3g60030 At4g37260 reg0.7 At3g47620 At5g49450 reg0.8 At3g21870 At5g14540 reg0.8 At4g33050 At5g48655 reg0.7 At4g33050 At3g01560 reg0.7 At5g01600 At1g43160 reg0.8 At5g01600 At1g43160 reg0.8 At3g05890 At1g74840 reg0.7 At2g16630 At4g37260 reg0.9 At2g16630 At2g04880 reg0.9 At5g45340 At2g25000 reg0.7 At5g45340 At2g38470 reg1.0 At5g45340 At3g01560 reg0.7 At2g22880 At5g48655 reg0.7 At2g22880 At2g04880 reg0.8 At3g52400 At1g43160 reg0.9 At1g29395 At5g61890 reg0.7 At1g29395 At1g74840 reg0.8 At2g16430 At1g74840 reg0.8 At4g23210 At1g22070 reg0.7 At4g23210 At5g49450 reg0.8 At4g21150 At1g22070 reg0.9 At3g48610 At5g24800 reg0.7 At3g48610 At5g47230 reg0.7 At2g38700 At1g74840 reg0.7 At4g30280 At5g14540 reg0.7 At1g53500 At5g48655 reg0.8 At1g53500 At3g01560 reg0.7 At2g23120 At5g14540 reg0.8 At5g09440 At2g22430 reg0.8 At5g09440 At1g74840 reg0.8 At5g09440 At5g24800 reg0.7 At2g41630 At2g20570 reg0.8 At1g56150 At2g46830 reg0.8 At1g56150 At5g49450 reg0.7 At1g10070 At2g22430 reg0.8 At3g21240 At3g01560 reg0.8 At5g16010 At4g37260 reg0.9 At5g46710 At1g25560 reg0.7 At5g11420 At1g68840 reg0.7 At5g11420 At5g24800 reg0.7 At4g01250 At5g44190 reg0.7 At3g07790 At2g30250 reg0.7 At1g13110 At2g38470 reg0.8 At1g13110 At4g01250 reg0.9 At1g13110 At1g22070 reg0.8 At2g25000 At2g20570 reg0.9 At2g25000 At2g46830 reg0.8 At2g25000 At2g04880 reg0.8 At2g25000 At2g38470 reg0.7 At2g25000 At4g31800 reg0.8 At2g25000 At5g24800 reg0.7 At1g35780 At3g01560 reg0.8 At5g11110 At1g74840 reg0.9 At5g11110 At1g43160 reg0.8 At5g11110 At5g47230 reg0.7 At5g11110 At5g61890 reg0.7 At5g11110 At3g61890 reg0.8 At4g12490 At1g74840 reg0.7 At1g51700 At1g74840 reg0.8 At3g55970 At4g37260 reg0.7 At3g55970 At4g17500 reg0.8 At5g49910 At1g22070 reg0.7 At4g39800 At1g74840 reg0.8 At4g39800 At2g20570 reg0.7 At4g39800 At2g46830 reg0.8 At4g39800 At2g20570 reg0.8 At2g13790 At2g46830 reg0.8 At2g13790 At3g61890 reg1.0 At1g52400 At2g20570 reg0.8 At5g18470 At2g46830 reg0.7 At5g18470 At2g22430 reg0.9 At1g53910 At5g14540 reg0.9 At2g40140 At5g48655 reg0.9 At2g40140 At2g20570 reg0.8 At2g40890 At2g46830 reg0.8 At2g40890 At1g74840 reg0.7 At3g55070 At4g37260 reg0.7 At1g68520 At1g74840 reg0.9 At1g14780 At1g43160 reg0.8 At1g14780 At5g61890 reg0.9 At1g14780 At2g22430 reg0.9 At2g39210 At2g20570 reg0.9 At1g76600 At2g46830 reg0.9 At1g76600 At2g04880 reg0.9 At1g76600 At2g25000 reg0.8 At1g76600 At2g38470 reg0.8 At1g76600 At5g48655 reg0.8 At5g19240 At2g22430 reg0.7 At3g02910 At2g22430 reg0.9 At3g63010 At3g61890 reg0.9 At3g49120 At1g74840 reg0.7 At3g49120 At4g37260 reg0.8 At3g49120 At5g14540 reg0.7 At3g52450 At2g23320 reg0.7 At3g52450 At4g31800 reg0.9 At3g52450 At1g25560 reg0.7 At5g58710 At1g68840 reg0.7 At5g58710 At5g49450 reg0.7 At5g58710 At3g01560 reg0.8 At4g25650 At1g53910 reg0.7 At4g04020 At4g17490 reg0.7 At4g04020 At5g49450 reg0.9 At3g47340 At5g49450 reg0.8 At1g77120 At5g48655 reg0.7 At2g26190 At4g37260 reg0.7 At5g49450 At1g22070 reg0.9 At1g20440 At1g22070 reg0.7 At5g59820 At5g48655 reg0.8 At1g26250 At1g74840 reg0.8 At5g07010 At4g37260 reg0.7 At5g07010 At1g74840 reg0.7 At3g54690 At2g20570 reg0.7 At3g54690 At2g46830 reg0.8 At3g54690 At2g20570 reg0.8 At5g26920 At2g46830 reg0.7 At5g26920 At3g61890 reg0.8 At2g02990 At1g74840 reg0.8 At5g61890 At5g49450 reg0.7 At2g34500 At1g74840 reg0.8 At4g01700 At2g46830 reg0.7 At4g01700 At2g20570 reg0.9 At5g59730 At2g46830 reg0.9 At5g59730 At3g01560 reg0.8 At3g52470 At5g14540 reg0.8 At3g52470 At5g48655 reg0.7 At3g52470 At2g46830 reg0.8 At3g02800 At5g49450 reg0.8 At4g24800 At4g37260 reg0.7 At4g24800 At2g20570 reg0.8 At5g25630 At2g46830 reg0.7 At5g25630 At5g24800 reg0.7 At5g28900 At2g20570 reg0.7 At4g27280 At2g46830 reg0.8 At4g27280 At5g49450 reg0.9 At3g13450 At5g24800 reg0.9 At1g20510 At2g20570 reg0.7 At1g20510 At2g46830 reg0.8 At1g20510 At5g44190 reg0.7 At1g20510 At2g46830 reg0.7 At1g14730 At5g61890 reg0.7 At1g43160 At3g01560 reg0.8 At5g06700 At5g14540 reg0.8 At5g06700 At1g22070 reg0.7 At5g06700 1g74840 reg0.8 At5g06700 At2g20570 reg0.7 At5g06700 5g24800 reg0.7 At4g34450 At1g43160 reg1.0 At2g28900 At1g74840 reg0.7 At2g28900 At4g37260 reg0.7 At2g28900 2g20570 reg0.7 At5g42310 At3g01560 reg0.8 At5g42310 At5g14540 reg0.8 At5g42310 At3g01560 reg0.7 At2g43620 At3g61890 reg0.8 At2g43620 At1g74840 reg0.7 At3g23810 At2g20570 reg0.8 At3g17820 At2g46830 reg0.7 At3g17820 At3g01560 reg0.8 At3g23820 At5g14540 reg0.7 At3g23820 At1g74840 reg0.8 At3g23820 At1g43160 reg0.7 At3g23820 At5g47230 reg0.8 At3g23820 At5g61890 reg0.8 At3g23820 At5g49450 reg0.9 At3g57520 At3g61890 reg0.9 At4g22212 At2g30250 reg0.7 At2g46225 At4g01250 reg0.7 At2g46225 At4g23810 reg0.8 At2g46225 At5g49450 reg0.7 At4g37260 At5g24800 reg0.7 At2g24940 At1g25560 reg0.9 At3g19390 At1g68840 reg0.9 At3g19390 At3g01560 reg0.8 At1g21790 At1g74840 reg0.8 At1g21790 At4g37260 reg0.8 At1g21790 At4g37260 reg0.7 At1g12780 At2g20570 reg0.7 At5g54490 At2g46830 reg0.9 At5g54490 At1g22070 reg0.9 At3g11670 At5g24800 reg0.7 At3g11670 At5g49450 reg-0.7 At2g30040 At1g25560 reg-0.7 At2g30040 At1g68840 reg-0.7 At2g30040 At2g20570 reg-0.9 At1g80180 At2g46830 reg-0.8 At1g80180 At1g22070 reg-0.7 At1g06760 At5g24800 reg-0.8 At5g61790 At5g48655 reg-0.7 At1g11545 At2g20570 reg-0.8 At1g07040 At2g46830 reg-0.8 At1g07040 At4g17500 reg-0.7 At2g15970 At2g22430 reg-0.9 At1g49500 At5g44190 reg-0.7 At3g04070 At4g37260 reg-0.8 At4g22710 At5g49450 reg-0.8 At5g63790 At5g14540 reg-0.7 At3g60320 At5g48655 reg-0.9 At3g60320 At2g22430 reg-0.7 At3g60320 At3g01560 reg-0.7 At4g37450 At4g37260 reg-0.7 At1g77450 At1g22070 reg-0.7 At1g42480 At2g46830 reg-0.7 At5g64570 At2g20570 reg-0.8 At5g39610 At2g22430 reg-0.8 At5g39610 At3g61890 reg-0.7 At2g34640 At5g24800 reg-0.8 At4g16660 At2g20570 reg-0.7 At5g60680 At2g46830 reg-0.7 At5g60680 At4g17500 reg-0.7 At2g47180 At1g22070 reg-0.9 At1g09210 At2g04880 reg-0.7 At1g68840 At2g38470 reg-0.8 At1g68840 At2g22430 reg-0.7 At1g49860 At5g44190 reg-0.8 At1g09240 At1g74840 reg-0.7 At1g76690 At4g37260 reg-0.9 At1g76690 At1g43160 reg-0.9 At4g31130 At5g61890 reg-0.7 At4g31130 At1g74840 reg-0.7 At4g31130 At4g37260 reg-0.8 At4g31130 At5g49450 reg-0.9 At2g38470 At5g44190 reg-0.7 At4g39980 At5g14540 reg-0.9 At4g12600 At4g37260 reg-0.8 At3g25230 At1g74840 reg-0.8 At1g32170 At2g20570 reg-0.7 At1g32170 At2g46830 reg-0.7 At1g32170 At1g43160 reg-0.7 At2g29490 At5g47230 reg-0.7 At2g29490 At5g61890 reg-0.8 At2g29490 At5g14540 reg-0.8 At5g05440 At5g48655 reg-0.8 At5g05440 At2g33710 reg-0.8 At4g39675 At2g20570 reg-0.7 At2g04280 At2g46830 reg-0.7 At2g04280 At1g74840 reg-0.7 At5g49480 At2g22430 reg-0.7 At5g49480 At3g61150 reg-0.7 At5g49480 At5g48655 reg-0.7 At1g76590 At4g37260 reg-0.7 At1g32920 At2g33710 reg-0.9 At4g38470 At4g17490 reg-0.8 At4g38470 At2g20570 reg-0.7 At4g38470 At2g46830 reg-0.8 At4g38470 At5g44190 reg-0.7 At5g15410 At2g20570 reg-0.7 At1g67910 At2g46830 reg-0.8 At1g67910 At3g01560 reg-0.7 At5g25460 At5g14540 reg-0.9 At5g25460 At5g48655 reg-0.8 At5g25460 At3g61150 reg-0.7 At3g48990 At1g22070 reg-0.8 At3g48990 At5g24800 reg-0.8 At3g48990 At5g49450 reg-0.7 At3g62960 At1g25560 reg-0.8 At3g56710 At1g68840 reg-0.7 At3g56710 At5g44190 reg-0.7 At3g51550 At1g74840 reg-0.8 At3g62120 At4g17500 reg-0.7 At2g42540 At5g49450 reg-0.8 At4g11280 At1g22070 reg-0.8 At3g15950 At3g01560 reg-0.9 At3g19130 At1g74840 reg-0.7 At4g21620 At4g37260 reg-0.8 At4g21620 At5g14540 reg-0.7 At3g21870 At5g48655 reg-0.7 At3g21870 At2g20570 reg-0.8 At3g15450 At2g46830 reg-0.8 At3g15450 At4g17500 reg-0.7 At5g01600 At4g17500 reg-0.7 At3g05890 At2g46830 reg-0.8 At1g22570 At5g48655 reg-0.9 At3g14310 At3g61150 reg-0.8 At5g65390 At2g20570 reg-0.8 At1g76160 At2g46830 reg-0.7 At1g76160 At4g17500 reg-0.7 At1g29395 At5g49450 reg-0.7 At5g66510 At1g74840 reg-0.7 At1g62480 At5g44190 reg-0.8 At3g07390 At2g20570 reg-0.8 At2g33830 At2g46830 reg-0.8 At2g33830 At3g61890 reg-0.7 At3g06680 At4g37260 reg-0.8 At5g23020 At5g24800 reg-0.7 At1g10070 At5g48655 reg-0.8 At4g36670 At2g38470 reg-0.9 At4g36670 At1g22070 reg-0.7 At2g44310 At5g24800 reg-0.7 At2g44310 At2g22430 reg-0.7 At2g44310 At3g61150 reg-0.7 At2g44310 At3g01560 reg-0.7 At4g12880 At5g14540 reg-0.8 At4g12880 At5g48655 reg-0.9 At4g12880 At1g74840 reg-0.8 At4g13770 At4g37260 reg-0.7 At4g13770 At3g61150 reg-0.7 At3g54400 At5g44190 reg-0.7 At5g06530 At5g48655 reg-0.9 At5g11420 At2g33710 reg-0.9 At5g11420 At4g17490 reg-0.8 At5g11420 At1g74840 reg-0.7 At1g19870 At4g37260 reg-0.7 At1g19870 At1g22070 reg-0.8 At1g19870 At4g17500 reg-0.7 At1g35780 At4g17500 reg-0.7 At5g11110 At5g49450 reg-0.9 At1g10960 At5g44190 reg-0.7 At5g06530 At5g44190 reg-0.7 At3g55970 At4g37260 reg-0.8 At3g11700 At3g01560 reg-0.7 At5g49910 At3g61890 reg-0.8 At4g23180 At1g74840 reg-0.9 At4g23180 At4g37260 reg-0.7 At4g23180 At1g74840 reg-0.8 At4g10480 At2g46830 reg-0.7 At4g10480 At2g22430 reg-0.7 At5g43970 At3g61150 reg-0.7 At5g43970 At3g61890 reg-0.7 At5g11670 At1g22070 reg-0.7 At1g56330 At5g48655 reg-0.7 At1g68520 At5g44190 reg-0.7 At1g68520 At3g61150 reg-0.7 At1g31420 At5g44190 reg-1.0 At2g23810 At2g20570 reg-0.9 At3g15630 At2g46830 reg-0.8 At3g15630 At2g20570 reg-0.9 At2g39570 At2g46830 reg-0.8 At2g39570 At5g49450 reg-0.8 At1g76600 At1g74840 reg-0.9 At2g06850 At5g14540 reg-0.7 At2g37640 At5g48655 reg-0.7 At2g37640 At2g20570 reg-0.8 At2g37640 At2g46830 reg-0.9 At2g37640 At1g74840 reg-0.7 At1g02930 At4g37260 reg-0.8 At1g02930 At2g33710 reg-0.8 At5g58710 At3g61890 reg-0.7 At1g64640 At1g74840 reg-0.8 At1g64640 At2g20570 reg-0.8 At3g49780 At2g46830 reg-0.9 At3g49780 At5g24800 reg-0.8 At3g49780 At5g24800 reg-0.7 At3g47340 At5g44190 reg-0.8 At1g09330 At5g48655 reg-0.7 At5g49450 At2g20570 reg-0.8 At5g49450 At2g46830 reg-0.7 At5g49450 At5g44190 reg-0.8 At5g07010 At5g49450 reg-0.7 At2g29550 At1g22070 reg-0.7 At2g34500 At1g74840 reg-0.8 At3g61440 At5g14540 reg-0.8 At2g24500 At5g24800 reg-0.7 At5g11520 At4g37260 reg-0.7 At1g62380 At5g48655 reg-0.7 At1g80070 At2g22430 reg-0.8 At3g13450 At5g14540 reg-0.8 At1g24530 At1g22070 reg-0.7 At1g24530 At5g49450 reg-0.7 At1g20510 At5g14540 reg-0.7 At1g73120 At4g17500 reg-0.7 At1g43160 At1g74840 reg-0.9 At1g53240 At2g20570 reg-0.8 At5g18170 At2g46830 reg-0.8 At5g18170 At3g61890 reg-0.8 At2g30010 At1g74840 reg-0.7 At2g30010 At4g37260 reg-0.9 At2g30010 At5g49450 reg-0.7 At2g30010 At5g24800 reg-0.9 At5g49700 At4g17500 reg-0.8 At2g28900 At5g24800 reg-0.8 At1g15690 At5g44190 reg-0.8 At4g12480 At2g04880 reg-0.9 At5g22920 At2g25000 reg-0.7 At5g22920 At2g38470 reg-1.0 At5g22920 At5g44190 reg-0.8 At3g23810 At5g48655 reg-0.8 At3g57520 At2g20570 reg-0.7 At3g57520 At2g46830 reg-0.8 At3g57520 At5g24800 reg-0.7 At3g57520 At1g53910 reg-0.8 At5g04340 At5g24800 reg-0.8 At2g05380 At2g33710 reg-0.7 At3g19390 At4g17490 reg-0.8 At3g19390 At4g37260 reg-0.8 At3g12740 At2g20570 reg-0.7 At1g12780 At3g61890 reg-0.8 At3g16530

The largest pattern was NC-NC-NC, representing 5,070 genes not affected by the treatments. The remainder 20 patterns (834 genes) were grouped into six classes that summarize the types of N-responses observed: (A) inorganic N, (B) inorganic N with Glu feedback, (C) organic N with no exogenous Glu rescue, (D) exogenous Glu, (E) exogenous and endogenous Glu and (F) exogenous and endogenous Glu with opposite effects (Table 3).

TABLE 3 Treatment Nms + Genes Nms + MSX + per Response Nms MSX Glu Genes class A) Inorganic nitrogen D D D 100 159 I I I 59 B) Inorganic nitrogen D D NC 30 48 and Glu I I NC 15 D D I 3 C) Internal Glu D NC NC 194 334 I NC NC 56 NC I I 49 NC D D 33 D I I 2 D) External Glu NC NC D 89 126 NC NC I 37 E) Internal/External Glu NC I NC 55 164 NC D NC 36 D NC D 47 I NC I 22 I D I 3 NC D I 1 F) Opposite D NC I 2 3 Internal/External Glu I NC D 1 834 Nitrogen responses. Patterns of expression based on their response to the Nms, Nms + MSX and Nms + MSX + Glu treatments. D = decreased; I = increased; NC = not changed. Genes were categorized into six classes based on these patterns.

The genes regulated in the experiments were compared to published results (Wang et al., 2004, Plant Physiol 136:2512-2522). This previous study identified 595 genes that responded similarly to nitrate treatment in both a NR-null mutant and wild-type plants. Because the mutant plants cannot assimilate nitrate, the responses observed were attributed to the action of nitrate as a signal and not a downstream metabolite. 80 out of these 595 genes showed consistent and reliable responses in the current experiments. Surprisingly, only 17 of these genes were found regulated by inorganic N signals in both studies (Table 4). Among these, we found nitrite reductase and several high affinity nitrate transporters. The majority, 58 of these 80 genes (73%), belonged to the C, D or E classes in the present studies suggesting that many previously described nitrate-responsive genes may respond to organic N signals (Table 4).

TABLE 4 Regulated by PUB LOCUS Gene Name Inorganic N At4g19170 9-cis-epoxycarotenoid dioxygenase, putative/neoxanthin cleavage enzyme, putative/carotenoid cleavage dioxygenase, putative similar to 9-cis- epoxycarotenoid dioxygenase [Phaseolus vulgaris][GI: 6715257]; neoxanthin cleavage enzyme, Lycopersicon esculentum, PATX: E325797 (68417.m02829) Inorganic N At3g61820 aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease (68416.m06939) Inorganic N At4g30190 ATPase 2, plasma membrane-type, putative/proton pump 2, putative/proton- exporting ATPase, putative strong similarity to SP Inorganic N At4g31500 cytochrome P450 83B1 (CYP83B1) Identical to Cytochrome P450 (SP: O65782)[Arabidopsis thaliana] (68417.m04474) Inorganic N At1g05340 expressed protein (68414.m00541) Inorganic N At1g19020 expressed protein (68414.m02367) Inorganic N At1g32920 expressed protein (68414.m04055) Inorganic N At2g41730 expressed protein (68415.m05158) Inorganic N At1g14870 expressed protein similar to PGPS/D12 [Petunia x hybrida] GI: 4105794; contains Pfam profile PF04749: Protein of unknown function, DUF614 (68414.m01778) Inorganic N At5g25350 F-box family protein contains Pfam PF00646: F-box domain and Pfam PF00560: Leucine Rich Repeat (6 copies); similar to F-box protein FBL6 (GI: 4432860) [Homo sapiens] (68418.m03007) Inorganic N At2g15620 ferredoxin--nitrite reductase, putative strong similarity to ferredoxin--nitrite reductase [Nicotiana tabacum] GI: 19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulphite reductase 4Fe—4S domain (68415.m01789) GDSL-motif Inorganic N At5g55050 lipase/hydrolase family protein similar to family II lipases EXL3 GI: 15054386, EXL1 GI: 15054382, EXL2 GI: 15054384 from [Arabidopsis thaliana]; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase (68418.m06861) Inorganic N At5g18600 glutaredoxin family protein contains glutaredoxin domain, INTERPRO: IPR002109 (68418.m02201) Inorganic N At1g49860 glutathione S-transferase, putative similar to GI: 860955 from [Hyoscyamus muticus] (Plant Physiol. 109 (1), 253-260 (1995)) (68414.m05590) Inorganic N At1g08090 high-affinity nitrate transporter (ACH1) identical to trans-membrane nitrate transporter protein AtNRT2: 1 [Arabidopsis thaliana] GI: 3747058, high-affinity nitrate transporter ACH1 [Arabidopsis thaliana] GI: 3608362 (68414.m00885) Inorganic N At1g12940 high-affinity nitrate transporter, putative similar to trans-membrane nitrate transporter protein AtNRT2: 1 [Arabidopsis thaliana] GI: 3747058, high-affinity nitrate transporter ACH1 [Arabidopsis thaliana] GI: 3608362 (68414.m01503) Inorganic N At1g12110 nitrate/chlorate transporter (NRT1.1) (CHL1) identical to nitrate/chlorate transporter SP: Q05085 from [Arabidopsis thaliana]; contains Pfam profile: PF00854 POT family (68414.m01402) Organic and At1g55920 serine O-acetyltransferase, putative identical to GI: 608677 from [Arabidopsis Inorganic N thaliana] (68414.m06414) Organic and At2g16660 nodulin family protein similar to nodulin-like protein [Arabidopsis thaliana] Inorganic N GI: 3329368, nodule-specific protein Nlj70 [Lotus japonicus] GI: 3329366 (68415.m01912) Organic and At3g45140 lipoxygenase (LOX2) identical to SP Inorganic N Organic and At5g64410 oligopeptide transporter OPT family protein similar to SP Inorganic N Organic and At5g65010 asparagine synthetase 2 (ASN2) identical to asparagine synthetase (ASN2) Inorganic N [Arabidopsis thaliana] GI: 3859536 (68418.m08178) Organic N At1g14780 expressed protein (68414.m01767) Organic N At1g22160 senescence-associated protein-related similar to senescence-associated protein SAG102 (GI: 22331931) [Arabidopsis thaliana] (68414.m02770) Organic N At1g31770 ABC transporter family protein contains Pfam profile: PF00005: ABC transporter (68414.m03899) Organic N At1g32450 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family (68414.m04005) Organic N At1g47128 cysteine proteinase (RD21A)/thiol protease identical to SP Organic N At1g49500 expressed protein (68414.m05548) Organic N At1g56150 auxin-responsive family protein similar to SP: P33082 Auxin-induced protein X15. [Soybean] {Glycine max} (68414.m06450) Organic N At1g67910 expressed protein (68414.m07755) Organic N At1g74090 sulfotransferase family protein similar to SP Organic N At1g74710 isochorismate synthase 1 (ICS1)/isochorismate mutase identical to GI: 17223087 and GB: AF078080; contains Pfam profile PF00425: chorismate binding enzyme; contains TIGRfam profile TIGR00543: isochorismate synthases; identical to cDNA isochorismate synthase 1 precursor (ICS1) nuclear gene for plastid product GI: 17223086 (68414.m08655) Organic N At1g77760 nitrate reductase 1 (NR1) identical to SP Organic N At1g78000 sulfate transporter (Sultr1; 2) identical to sulfate transporter Sultr1; 2 [Arabidopsis thaliana] GI: 7768660; contaisn Pfam profiles PF00916: Sulfate transporter family and PF01740: STAS domain; contains TIGRfam profile TIGR00815: sulfate permease (68414.m09090) Organic N At2g15970 cold-acclimation protein, putative (FL3-5A3) similar to cold acclimation Organic N At2g27830 WCOR413-like protein gamma form [Hordeum vulgare] gi expressed protein (68415.m03374) Organic N At2g28550 AP2 domain-containing transcription factor RAP2.7 (RAP2.7) nearly identical to AP2 domain transcription factor RAP2.7 (GI: 2281639) [Arabidopsis thaliana] (68415.m03469) Organic N At2g30040 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68415.m03653) Organic N At2g31790 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase (68415.m03881) Organic N At2g33710 AP2 domain-containing transcription factor family protein similar to RAP2.6 (GI: 17065542) {Arabidopsis thaliana} (68415.m04132) Organic N At2g33830 dormancy/auxin associated family protein contains Pfam profile: PF05564 dormancy/auxin associated protein (68415.m04151) Organic N At2g35930 U-box domain-containing protein similar to immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum] GI: 14582200; contains Pfam profile PF04564: U-box domain (68415.m04410) Organic N At2g39200 seven transmembrane MLO family protein/MLO-like protein 12 (MLO12) identical to SP Organic N At2g39570 ACT domain-containing protein contains Pfam ACT domain PF01842 (68415.m04854) Organic N At2g40140 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and Pfam domain, PF00023: Ankyrin repeat (68415.m04937) Organic N At2g43100 aconitase C-terminal domain-containing protein contains Pfam profile PF00694: Aconitase C-terminal domain (68415.m05350) Organic N At3g02910 expressed protein contains Pfam domain PF03674: Uncharacterised protein family (UPF0131) (68416.m00286) Organic N At3g05200 zinc finger (C3HC4-type RING finger) family protein (ATL6) contains Pfam profile: PF00097: Zinc finger, C3HC4 type (RING finger) (68416.m00567) Organic N At3g10520 non-symbiotic hemoglobin 2 (HB2) (GLB2) identical to SP Organic N At3g13930 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide S- acetyltransferase [Zea mays] GI: 5669871; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin- requiring enzyme, PF02817: e3 binding domain (68416.m01759) Organic N At3g14940 phosphoenolpyruvate carboxylase, putative/PEP carboxylase, putative strong similarity to SP Organic N At3g15630 expressed protein (68416.m01982) Organic N At3g47520 malate dehydrogenase [NAD], chloroplast (MDH) identical to chloroplast NAD- malate dehydrogenase [Arabidopsis thaliana] GI: 3256066; contains InterPro entry IPR001236: Lactate/malate dehydrogenase; contains Pfam profiles PF00056: lactate/malate dehydrogenase, NAD binding domain and PF02866: lactate/malate dehydrogenase, alpha/beta C- terminal domain (68416.m05168) Organic N At3g48740 nodulin MtN3 family protein similar to MtN3 GI: 1619602 (root nodule development) from [Medicago truncatula] (68416.m05322) Organic N At3g48990 AMP-dependent synthetase and ligase family protein similar to peroxisomal- coenzyme A synthetase (FAT2) [gi: 586339] from Saccharomyces cerevisiae; contains Pfam AMP-binding enzyme domain PF00501; identical to cDNA; identical to cDNA adenosine monophosphate binding protein 3 AMPBP3 (AMPBP3)GI: 20799714 (68416.m05351) Organic N At3g49940 LOB domain protein 38/lateral organ boundaries domain protein 38 (LBD38) identical to SP Organic N At3g58990 aconitase C-terminal domain-containing protein contains Pfam profile PF00694: Aconitase C-terminal domain (68416.m06575) Organic N At3g60750 transketolase, putative strong similarity to transketolase 1 [Capsicum annuum] GI: 3559814; contains Pfam profiles PF02779: Transketolase, pyridine binding domain, PF02780: Transketolase, C-terminal domain, PF00456: Transketolase, thiamine diphosphate binding domain (68416.m06796) Organic N At3g61190 BON1-associated protein 1 (BAP1) identical to BON1-associated protein 1 [Arabidopsis thaliana] GI: 15487384; contains Pfam profile PF00168: C2 domain; supporting cDNA gi Organic N At3g61890 homeobox-leucine zipper protein 12 (HB-12)/HD-ZIP transcription factor 12 identical to homeobox-leucine zipper protein ATHB-12 (GI: 6899887) [Arabidopsis thaliana] (68416.m06951) Organic N At4g12280 copper amine oxidase family protein contains Pfam domain, PF01179: Copper amine oxidase, enzyme domain (68417.m01946) Organic N At4g13510 ammonium transporter 1, member 1 (AMT1.1) identical to SP Organic N At4g13770 cytochrome P450 family protein (68417.m02136) Organic N At4g24620 glucose-6-phosphate isomerase, putative similar to glucose-6-phosphate isomerase [Spinacia oleracea] GI: 3413511; contains Pfam profile PF00342: glucose-6-phosphate isomerase (68417.m03526) Organic N At4g30470 cinnamoyl-CoA reductase-related similar to cinnamoyl-CoA reductase from Pinus taeda [GI: 17978649], Saccharum officinarum [GI: 3341511] (68417.m04326) Organic N At4g36670 mannitol transporter, putative similar to mannitol transporter [Apium graveolens var. dulce] GI: 12004316; contains Pfam profile PF00083: major facilitator superfamily protein (68417.m05203) Organic N At4g37540 LOB domain protein 39/lateral organ boundaries domain protein 39 (LBD39) identical to SP Organic N At4g37610 TAZ zinc finger family protein/BTB/POZ domain-containing protein contains Pfam PF00651: BTB/POZ domain; contains Pfam PF02135: TAZ zinc finger; similar to Speckle-type POZ protein (SP: O43791) [Homo sapiens] (68417.m05321) Organic N At4g38470 protein kinase family protein similar to protein kinase [gi: 170047] from Glycine max; contains Pfam protein kinase domain PF00069 (68417.m05436) Organic N At4g39800 inositol-3-phosphate synthase isozyme 1/myo-inositol-1-phosphate synthase 1/ MI-1-P synthase 1/IPS 1 identical to SP Organic N At5g04950 nicotianamine synthase, putative similar to nicotianamine synthase [Lycopersicon esculentum][GI: 4753801], nicotianamine synthase 2 [Hordeum vulgare][GI: 4894912] (68418.m00524) Organic N At5g40850 urophorphyrin III methylase (UPM1) identical to urophorphyrin III methylase (GI: 1146165) [Arabidopsis thaliana]; similar to s-adenosyl-L-methionine- dependent uroporphyrinogen III methyltransferase (GI: 1490606) [Arabidopsis thaliana]; similar to Diphthine synthase (Diphtamide biosynthesis methyltransferase) (DPH5) (SP: P32469) [Saccharomyces cerevisiae]; contains Pfam PF00590: Tetrapyrrole (Corrin/Porphyrin) Methylases domain; contains TIGRFAM PF00590: Tetrapyrrole (Corrin/Porphyrin) Methylases (68418.m04960) Organic N At5g41670 6-phosphogluconate dehydrogenase family protein contains Pfam profiles: PF00393 6-phosphogluconate dehydrogenase C-terminal domain, PF03446 NAD binding domain of 6-phosphogluconate (68418.m05063) Organic N At5g45340 cytochrome P450 family protein similar to SP Organic N At5g46050 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family (68418.m05663) Organic N At5g48370 thioesterase family protein similar to SP Organic N At5g49480 sodium-inducible calcium-binding protein (ACP1)/sodium-responsive calcium- binding protein (ACP1) identical to NaCl-inducible Ca2+-binding protein GI: 2352828 from [Arabidopsis thaliana] (68418.m06123) Organic N At5g51830 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase (68418.m06426) Organic N At5g54170 expressed protein weak similarity to SP Organic N At5g58140 protein kinase family protein/non phototropic hypocotyl 1-like protein (NPL1) contains Pfam domains, PF00069: Protein kinase domain and PF00785: PAC motif; similar to SP: O48963 Nonphototropic hypocotyl protein 1 (Phototropin) [Mouse-ear cress] {Arabidopsis thaliana}; identical to cDNA non phototropic hypocotyl 1-like (NPL1) GI: 5391441 (68418.m07277)

This table contains a list of genes that were previously identified as regulated by inorganic N (Wang et al., 2004 Plant Physiol 136:2512-2522) and that were found regulated in the current study. The first column summarizes the regulatory pattern observed in this study.

Nitrogen signals control amino acid metabolism in Arabidopsis seedlings. To evaluate the biological significance of the observed patterns of response to the treatments, the distribution of functional categories in the six classes defined in Table 3 were analyzed using the BioMaps program (Gutierrez et al., 2007, Genome Biol. 8:R7). To focus on the most prominent biological processes affected, over-represented functional terms (p≦0.01) with 5 or more genes (Table 5) were analyzed. This analysis indicated that inorganic N represses amino acid biosynthesis, and in particular a subset of genes related to the metabolism of S-containing amino acids. In addition, increased levels of internal Glu appears to induce the expression of genes involved in cell wall biosynthesis, especially genes in the xyloglucan:xyloglucosyl transferase family. Internal Glu also appears to repress genes involved in several aspects of metabolism, most prominently amino acid and carbohydrate metabolism. This analysis also showed that genes involved in secondary metabolism are repressed by both internal and external organic N sources. These results indicate that the balance between organic and inorganic N controls the expression of genes involved in N-reduction, N-assimilation and amino acid metabolism in Arabidopsis plants and coordinates N-assimilation with cellular processes including for example, cell wall biosynthesis.

TABLE 5 Response MIPS Functional Term p-value Genes Inorganic nitrogen repression amino acid biosynthesis (12) 0.00322 At3g54640, At4g13890, At3g01120, At5g37600, At3g23810, (100) At2g36880, At4g39980, At4g15560, At5g23020, At3g17390, At5g16570, At3g03780 Internal Glu induction (89) cell wall (7) 0.00933 At5g64570, At1g03870, At1g32170, At2g01850, At1g11545, At3g23730, At3g14310 Internal Glu repression (246) METABOLISM (98) 6.95E−05 At3g61190, At5g65620, At5g64440, At5g37990, At3g02360, At1g08920, At5g49720, At1g75680, At2g44160, At2g30490, At5g35170, At1g77760, At4g00370, At1g51680, At1g15130, At3g19420, At4g33580, At1g17840, At3g60750, At2g30870, At3g54690, At1g15950, At2g47180, At5g01820, At5g20070, At4g24620, At2g46830, At5g05730, At4g21850, At1g06640, At5g20980, At5g48370, At4g36640, At4g34050, At2g38010, At4g19810, At3g48690, At2g27860, At5g03555, At1g22610, At2g36690, At3g63010, At3g21240, At4g29900, At2g39210, At1g37130, At4g33680, At1g79380, At4g39800, At4g36250, At5g63850, At1g02400, At1g53500, At1g66900, At5g01800, At4g14440, At1g11840, At3g44720, At2g20360, At2g22240, At5g54960, At4g12280, At5g55910, At1g03590, At2g38700, At5g54160, At1g65960, At2g16430, At5g11110, At2g30040, At4g11570, At3g21230, At5g58140, At4g39640, At5g37510, At4g00360, At3g01560, At4g30440, At2g40890, At2g47880, At3g48560, At5g49630, At1g76670, At5g43370, At4g30470, At4g25300, At2g29450, At2g40140, At4g39330, At1g07890, At4g30280, At1g12000, At2g36290, At5g53370, At1g74710, At3g45640, At3g23820, At3g17820 amino acid metabolism (28) 0.00017 At3g61190, At5g64440, At5g63850, At4g39640, At5g05730, At4g21850, At1g06640, At5g20980, At1g02400, At2g44160, At3g48560, At5g49630, At2g30490, At1g11840, At1g77760, At3g44720, At1g22610, At4g25300, At5g54960, At3g60750, At2g36690, At1g07890, At3g54690, At1g37130, At1g65960, At1g74710, At4g33680, At3g17820 complex cofactor binding (13) 0.00235 At4g36250, At3g60750, At5g37510, At4g36640, At1g15950, At2g44160, At3g48560, At1g53500, At2g30490, At2g27860, At4g33680, At5g54960, At4g12280 C-compound and 0.00673 At4g36250, At3g02360, At5g49720, At1g75680, At2g44160, carbohydrate utilization (36) At1g53500, At1g11840, At2g20360, At2g22240, At5g54960, At4g33580, At3g60750, At3g54690, At1g15950, At5g11110, At2g47180, At4g11570, At4g24620, At3g21230, At5g37510, At5g20980, At4g30440, At3g48560, At3g48690, At2g27860, At1g76670, At4g30470, At4g39330, At4g30280, At3g21240, At3g63010, At2g36290, At1g12000, At5g53370, At3g23820, At4g39800 Internal/External Glu repression secondary metabolism (19) 0.0036 At3g16150, At1g13110, At4g15390, At3g58990, At1g06000, (102) At4g39950, At4g22710, At4g30210, At1g20510, At2g05710, At5g48010, At5g26030, At1g02500, At5g40850, At1g10360, At1g05010, At2g34460, At5g47990, At5g45340

Network analysis reveals a metabolic gene network connected to regulatory transcription factors regulated by organic N. To uncover the mechanism underlying gene regulation in response to sensing Glu or a Glu-derived product, network analysis was used to identify the subnetwork of genes regulated by organic N (FIG. 3). The subnetwork of N-regulated genes using an Arabidopsis multinetwork was generated as described previously (Gutierrez et al., 2007, Genome Biol 8:R7). Cytoscape was used to visualize the resulting subnetworks wherein genes were represented as nodes connected by edges that represented distinct interactions (e.g., metabolic reactions, regulatory interactions). In addition to the interactions described previously (Gutierrez et al., 2007, Genome Biol 8:R7), regulatory connections were predicted between genes and associated transcription factors (see, Materials and Methods). In order to identify putative “master regulators” that control the expression of genes regulated by organic N, the transcription factors regulated in these experiments were ranked based on the number of regulatory connections in the subnetwork (Table 6). At the top of the list, were a Myb family transcription factor (At1g74840), the central clock gene CCA1 (At2g46830) and a golden 2-related transcription factor (GLK1; At2g20570). Interestingly, both CCA1 and GLK1 were predicted to positively affect the expression of a gene for glutamine synthetase (GLN1.3) (which uses Glu in a biosynthetic reaction), and to negatively affect the expression of a glutamate dehydrogenase gene (GDH1) (which catabolizes Glu) (FIG. 3). Moreover, the analysis suggests that both CCA1 and GLK1 block the expression of a bZIP transcription factor (bZIP1) which is predicted to induce the expression of the Gln-dependent ASN1 gene. Thus, Glu regulation of the GLK1 and CCA1 transcription factors appears to coordinate the expression of genes involved in making Gln (GLN1.3) vs. those involved in metabolizing Gln into Glu (ASN1, GDH1). In addition, another gene in this gene subnetwork encodes a putative asparaginase gene (ANS) that controls the degradation of Asn (to Asp and Glu) (FIG. 3). The ASN1 (Asn biosynthesis) and ANS (Asn degradation) genes had inverse expression patterns (correlation=−0.51), suggesting that Glu coordinates the reciprocal regulation of Asn synthesis and degradation by coordinating an antiregulation of the cognate.

TABLE 6 Number of PUB connections LOCUS Annotation 51 At1g74840 myb family transcription factor. 47 At2g46830 myb-related transcription factor (CCA1) 46 At2g20570 golden2-like transcription factor (GLK1) 31 At4g37260 myb family transcription factor (MYB73) 30 At5g24800 bZIP1 transcription factor family protein contains 30 At5g49450 bZIP1 family transcription factor 29 At5g14540 proline-rich family protein contains proline rich extensin domains. 29 At5g48655 zinc finger (C3HC4-type RING finger) family protein 24 At1g22070 bZIP1 family transcription factor (TGA3) 23 At3g01560 proline-rich family protein contains proline rich extensin domains. 20 At2g22430 homeobox-leucine zipper protein 6 (HB-6) 19 At5g44190 myb family transcription factor (GLK2) 16 At1g43160 AP2 domain-containing protein RAP2.6 (RAP2.6) 15 At3g61890 homeobox-leucine zipper protein 12 (HB-12) 14 At5g61890 AP2 domain-containing transcription factor family protein similar to RAP2.6 12 At3g61150 homeobox-leucine zipper family protein 11 At2g38470 WRKY family transcription factor 11 At4g17500 ethylene-responsive element-binding protein 1 (ERF1) 10 At2g25000 WRKY family transcription factor

Validation of network model predictions highlights the regulatory role of CCA1 in the N-assimilatory pathway. The model in FIG. 3 predicts that CCA1 and/or GLK1 genes are important regulators of genes involved in N-assimilation and over-expression of either one of these genes would repress the expression of ASN1 and GDH1 and induce the expression of the GLN1.3 gene. Conversely, a knockout of the CCA1 or GLK1 gene should increase ASN1 and GDH1 expression levels and diminish GLN1.3 mRNA levels. To test these hypotheses, we used previously characterized CCA1 overexpressor (CCA1-ox) (Wang et al., 1998, Cell 93:1207-1217) and GLK1 gene knockout (glk1) (Fitter et al., 2002, Plant J 31:713-727) lines. A stronger phenotype for the overexpressor lines was anticipated as compared to the knockout, as the model predicts redundancy in the function of CCA1 and GLK1 in regulating ASN1, GDH1 and GLN1.3 gene expression. CCA1-ox, glk1 and wild-type plants were grown for two weeks as above, and samples were collected in the morning (3 h after dawn). Total RNA was extracted from whole seedlings and RT-qPCR was performed to determine mRNA levels for ASN1, GLN1.3 and GDH1 in the three genotypes. As shown in FIG. 4, all three genes tested showed altered expression patterns in the mutant lines utilized (as determined by analysis of variance, p≦0.05) which were consistent with the predicted network model shown in FIG. 1. In addition, bZIP1 mRNA level was also repressed in CCA1-ox (FIG. 10). ASN1, GDH1 and GLN1.3 mRNA levels were not altered in the glk1 line, with the exception of a small increase in GDH1 mRNA levels. This is probably due to the redundant function of GLK1 and CCA1 in regulating the expression of the tested genes. In contrast, and as predicted by the model shown in FIG. 3, ASN1 and GDH1 levels were decreased in the CCA1-ox line. Also consistent with the predictions of the model, GLN1.3 mRNA levels were increased as compared to wild-type in the CCA1-ox.

The network model predicts that the effect of CCA1 on the expression of the target genes will be direct. To test this hypothesis, ChIP assays were used using a CCA1 antibody (FIG. 4B). As controls, it was demonstrated that the ChIP assays could detect binding of CCA1 protein to a region of the TOC1 promoter, a known target of CCA1, but was not able to detect the ZTL promoter which has no circadian oscillation at the mRNA level. Consistent with the model for CCA1, ChIP assays in both wild-type and CCA1-ox lines were able to confirm binding of CCA1 to the promoter regions of GLN1.3, GDH1 and bZIP1 promoters. These results support the model, and indicate that CCA1 regulates expression of bZIP1, GDH1 and GLN1.3 genes directly, and indirectly for ASN1 through bZIP1.

N-nutrient signals act as input to the Arabidopsis circadian clock. CCA1 is a key component of a negative feedback loop at the center of the Arabidopsis circadian clock (McClung, 2006, Plant Cell 18:792-803; Millar, 2004, J. Exp. Bot. 55:277-283). Because the results showed that N-treatments affected CCA1 expression, it was hypothesized that N might serve as an input capable of affecting the circadian clock function. To test this hypothesis, pulses of inorganic or organic N were provided at intervals spanning a circadian cycle and determined the effects on the phase of the oscillation in CCA1::LUC expression. Each treatment resulted in stable phase shifts indicating that N status serves as an input to the circadian clock (FIG. 5 and FIG. 11). Inorganic N and 10 mM Glu treatments conferred slight phase advances whereas 10 mM Gln conferred only delays. The Nms and Glu pulses did not affect the period but the Gln pulse shortened the period as determined by one-way analysis of variance and Dunn's multiple comparison tests. Thus, the clock regulates a number of steps in N metabolism, such as NR expression and activity (Pilgrim et al., 1993, Plant Mol Biol 23:349-64) and ASN1 expression as demonstrated herein (see also Harmer et al., 2000, Science 290:2110-2113). In turn, N status feeds back to the clock, at least in part through its effect on CCA1 expression.

7.4 Discussion

In the present study, genomic and pharmacological approaches were used to distinguish organic from inorganic N responses in Arabidopsis seedlings. The majority of the genes regulated by the N-treatments used in this study (81%) are responding to organic N signals. Among the genes regulated by organic N, we distinguished two classes of genes: (i) genes that responded only to external Glu application and (ii) genes that responded to internal and external sources of Glu (Table 3). The difference in these two expression patterns raises the possibility that there are different mechanisms for sensing internally produced cellular Glu vs. extra cellular Glu that is transported between cells. The other possibility is that the differences in internal vs. external Glu responses observed in this study reflect distinct threshold responses to Glu levels. There is precedence for internal and external Glu sensing mechanisms in other organisms. Bacteria regulate ammonium assimilation via a mechanism involving PII, a sensor that measures levels of α-ketoglutarate and Glu (Arcondeguy et al., 2001, Microbiol Mol Biol Rev 65:80-105). Plants contain a PII protein that is localized to chloroplasts (Hsieh et al., 1998, Proc Natl Acad Sci USA 95:13965-13970), a potential sensor of internal levels of Glu. By contrast, extracellular Glu is sensed by Glu receptors in animal brains (Sykova, 2004, Neuroscience 129:861-876). The presence of Glu receptor genes in plants (Lacombe et al., 2001, Science 292:1486-1487) raises the possibility that Glu receptors in plants may serve to sense levels of external apoplastic transported Glu.

Analysis of the genes regulated by N, identified a gene network with transcription factors that appear to regulate the expression of N-assimilatory genes. New to this study is the finding that the NR genes (NIA1, NIA2) are repressed by organic N, as is GLN1.3, which is involved in Gln biosynthesis. Within this N-regulated network we also found genes involved in N uptake and metabolism including an ammonium transporter (AMT1.1), genes involved in assimilating N into and out of Asn (ASN1, ANS), as well as amino acid transporter genes. Organic N negatively regulated AMT1.1 and ANS, but induced the ASN1 gene. It was therefore hypothesized that in the presence of Glu, or a Glu-derived metabolite, Asn production is optimized and regulated at the level of transcription by increasing levels of ASN1 and decreasing levels of ANS transcripts. These results are consistent with Asn serving as a major N storage compound (Lam et al., 1994, Plant Physiol 106:1347-1357) controlled by the ASN1 gene, and suggest a mechanism to maximize Asn production, degradation and distribution depending on levels of internal sources of organic N.

The network analysis proposed a mechanism for transcriptional regulation of N-assimilation. ASN1 was a predicted target of the transcription factor bZIP1; GDH1, GLN1.3 and bZIP1 were predicted targets of GLK1 and CCA1. Because bZIP1 is also regulated by carbon (Gutierrez et al., 2007, Genome Biol 8:R7), this gene may be an integrator of C and N signaling for regulation of N-assimilation in Arabidopsis. This our network model was validated by measuring mRNA levels of the target genes in CCA1-ox and glk1 knockout lines. As predicted, ASN1 and GDH1 mRNA levels were down regulated and GLN1.3 mRNA was elevated in the CCA1-ox line. In contrast, mRNA levels for these three genes were not affected in the glk1 knockout line. The lack of a molecular phenotype in the glk1 knockout may be explained by the fact that CCA1 and GLK1 are predicted to have the same regulatory function in the subnetwork. The predictions that CCA1 directly targets a number of genes in the network was validated using CCA1 antibodies in ChIP experiments. Because CCA1 is one of the central components of the circadian clock in Arabidopsis, regulation of CCA1 expression in response to organic N suggests that the circadian clock may receive N nutritional inputs in plants. Thus, in addition to light and temperature (Millar, 2004, J. Exp. Bot. 55:277-283; McClung, 2001, Ann. Rev. Plant Physiol Plant Mol. Biol. 52:139-162), nutrients—such as N—may act as input for the clock. The phase response curve analysis results presented herein are consistent with weak (type 1) resetting similar to those observed in response to light pulses in Lemna gibba (Kondo, 1983, Plant Cell Physiol. 24:659-665), KCl or ethanol pulses in Phaseolus coccineus (Bunning and Moser, 1973, Proc Natl Acad Sci USA 70:3387-3389) and cAMP or imidazole pulses in Trifolium repens (Bollig et al., 1978, Planta 141:225-230), strengthening the hypothesis that N status feeds back to the clock, at least in part through its effect on CCA1 expression. In Arabidopsis, light pulses evoke strong delays (˜8 h) in the early night and strong advances (5-10 h) later in the night (Covington et al., 2001, Plant Cell 13:1305-1315). Although the molecular basis of these phase shifts is not definitively established, they may involve induction of CCA1 by light (Wang et al., 1998, Cell 93:1207-1217). In the above-experiments, N treatment would decrease CCA1 mRNA abundance. That this elicits only small phase shifts suggests that posttranscriptional regulation buffers against CCA1 activity changes from reduced mRNA, at least over the time frames tested with our 4-h N pulses. Alternatively, N treatment may also modulate other clock components either at the mRNA, protein abundance or protein activity level in ways that reduce the magnitude of the phase shifts in response to CCA1 mRNA decrease. The emerging view of the circadian clock is as a key integrator of multiple metabolic and physiologic processes (Lam et al., 1994, Plant Physiol 106:1347-1357; Kondo, 1983, Plant Cell Physiol. 24:659-665). As such it receives input not only from environmental stimuli but also from multiple metabolic pathways, many of which are subject to circadian regulation. Thus, the clock regulates a number of steps in N metabolism, such as NR expression and activity (Bunning and Moser, 1973, Proc Natl Acad Sci USA 70:3387-3389) and ASN1 expression. In turn, N status feeds back to the clock, at least in part through its effect on CCA1 expression. This feedback is more subtle than the effects of saturating light pulses and our results are consistent with N status fine tuning clock function rather than conferring large changes such as those observed in response to light (FIG. 6).

Oscillations in the mRNA of genes that code for metabolic enzymes could have an impact on metabolite levels, as recently shown (Gibon et al., 2006, Genome Biology 7:R76). Predicting time of food availability is key for the survival in most animals (Stephan, 2002, J Biol Rhythms 17:284-292). The data presented herein suggest that this may also be the case in Arabidopsis, e.g., anticipating the availability of carbon skeletons produced by photosynthesis to assimilate inorganic N into amino acids. Moreover, this data provides a plausible molecular mechanism for how this could happen in plants via CCA1. The present study thus provides evidence that plant nutrition, like in animals, is tightly linked to circadian functions as previously hypothesized (Harmer et al., 2000, Science 290:2110-2113). Recently, it was shown that the central clock gene Per2 is necessary for food anticipation in mice (Feillet et al., 2006, Curr Biology 16:2016-2022). The present data indicates that the central clock gene CCA1 plays a role in circadian regulation of N-assimilation in plants (FIG. 12). This data is consistent with a model in which the N-assimilatory pathway is a downstream target of the clock with CCA1 being the direct regulatory factor. Moreover, Glu or other Glu-derived signal act as input to the circadian clock providing a link between plant N-nutrition and circadian rhythms.

8. EQUIVALENTS

Although the invention is described in detail with reference to specific embodiments thereof, it will be understood that variations which are functionally equivalent are within the scope of this invention. Indeed, various modifications of the invention in addition to those shown and described herein will become apparent to those skilled in the art from the foregoing description and accompanying drawings. Such modifications are intended to fall within the scope of the appended claims. Those skilled in the art will recognize, or be able to ascertain using no more than routine experimentation, many equivalents to the specific embodiments of the invention described herein. Such equivalents are intended to be encompassed by the following claims.

All publications, patents and patent applications mentioned in this specification are herein incorporated by reference into the specification to the same extent as if each individual publication, patent or patent application was specifically and individually indicated to be incorporated herein by reference in their entireties.

Annex: Expression patterns in response to the Nms, Nms MSX, and Nms MSX Glu treatments. Pattern or response to the treatments Nms-Nms/ MSX- # Class and interpretation Name/MSX 

ProbeID AGI locus Gene annotation 1 (A) Inorganic Nitrogen I-I-I 267293_at At2g23810 senescence-associated family protein similar to senescence-associated protein 5 [Hemerocallis hybrid cultivar] induction 2 (A) Inorganic Nitrogen I-I-I 267028_at At2g38470 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA-binding domain; (68415.m04725) induction 3 (A) Inorganic Nitrogen I-I-I 266800_at At2g22880 VQ motif-containing protein contains PF05678: VQ motif (68415.m02716) induction 4 (A) Inorganic Nitrogen I-I-I 266097_at At2g37970 SOUL heme-binding family protein weak similarity to SOUL protein [Mus musculus] GI: 4886906; contain Pfam profile PF04832: induction SOUL heme-binding protein (68415.m04660) 5 (A) Inorganic Nitrogen I-I-I 265475_at At2g15620 ferredoxin-nitrite reductase, putative strong similarity to ferredoxin--nitrite reductase [Nicotiana tabacum] GI: 19893; contains Pfam induction profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulphite reductase 4Fe—4S domain (68415.m01789) 6 (A) Inorganic Nitrogen I-I-I 265075_at At1g55450 embryo-abundant protein-related similar to embryo-abundant protein GI: 1350531 from [Picea glauca] (68414.m06342) induction 7 (A) Inorganic Nitrogen I-I-I 264953_at At1g77120 alcohol dehydrogenase (ADH) identical to alcohol dehydrogenase GI: 469467 from (Arabidopsis thaliana) (68414.m06982) induction 8 (A) Inorganic Nitrogen I-I-I 264636_at At1g65490 expressed protein (68414.m07431) induction 9 (A) Inorganic Nitrogen I-I-I 264580_at At1g05340 expressed protein (68414.m00541) induction 10 (A) Inorganic Nitrogen I-I-I 263475_at At2g31945 expressed protein (68415.m03902) induction 11 (A) Inorganic Nitrogen I-I-I 263182_at At1g005575 expressed protein (68414.m00576) induction 12 (A) Inorganic Nitrogen I-I-I 262832_s_at At1g14870 expressed protein similar to PGPS/D12 [Petunia x hybrida] GI: 4105794; contains Pfam profile PF04749: Protein of unknown induction function, DUF614 (68414.m01778) 13 (A) Inorganic Nitrogen I-I-I 262571_at At1g15430 expressed protein (68414.m01852) induction 14 (A) Inorganic Nitrogen I-I-I 262238_at At1g48300 expressed protein (68414.m05395) induction 15 (A) Inorganic Nitrogen I-I-I 261892_at At1g80840 WRKY family transcription factor similar to WRKY transcription factor GB: BAA87058 GI: 6472585 from [Nicotiana tabacum] induction (68414.m09484) 16 (A) Inorganic Nitrogen I-I-I 261749_at At1g76180 dehydrin (ERD14) identical to SP|P42763 Dehydrin ERD14 {Arabidopsis thaliana} (68414.m08846) induction 17 (A) Inorganic Nitrogen I-I-I 261648_at At1g27730 zinc finger (C2H2 type) family protein (ZAT10)/salt-tolerance zinc finger protein (STZ) identical to salt-tolerance zinc finger protein induction GB: CAA64820 GI: 1565227 from [Arabidopsis thaliana]; contains Pfam domain, PF00096: Zinc finger, C2H2 type; identical to cDNA zinc finger protein STZ/ZAT10 (STZ/ZAT10) GI: 9965730 (68414.m03389) 18 (A) Inorganic Nitrogen I-I-I 261193_at At1g32920 expressed protein (68414.m04055) induction 19 (A) Inorganic Nitrogen I-I-I 260522_x_at At2g41730 expressed protein (68415.m05158) induction 20 (A) Inorganic Nitrogen I-I-I 260101_at At1g73260 trypsin and protease inhibitor family protein/Kunitz family protein similar to trypsin inhibitor propeptide [Brassica oleracea] induction GI: 841208; contains Pfam profile PF00197: Trypsin and protease inhibitor (68414.m08478) 21 (A) Inorganic Nitrogen I-I-I 259979_at At1g76800 expressed protein (68414.m08913) induction 22 (A) Inorganic Nitrogen I-I-I 259705_at At1g77450 no apical meristem (NAM) family protein contains Pfam PF02385: No apical meristem (NAM) domain; similar to GRAB1 protein induction GB: CAA09371, a novel member of the NAC domain family (68414.m09019) 23 (A) Inorganic Nitrogen I-I-I 259570_at At1g20440 dehydrin (COR47) identical to dehydrin COR47 (Cold-induced COR47 protein) [Arabidopsis thaliana] SWISS-PROTT: P31168 induction (68414.m02547) 24 (A) Inorganic Nitrogen I-I-I 259479_at At1g19020 expressed protein (68414.m02367) induction 25 (A) Inorganic Nitrogen I-I-I 259037_at At3g09350 armadillo/beta-catenin repeat family protein contains Pfam profile: PF00514 armadillo/beta-catenin-like repeat (68414.m01109) induction 26 (A) Inorganic Nitrogen I-I-I 257206_at At3g16530 leguma lectin family protein contains Pfam domain, PF00139: Legume lectins beta domain (68416.m02111) induction 27 (A) Inorganic Nitrogen I-I-I 256337_at At1g72060 expressed protein (68414.m08330) induction 28 (A) Inorganic Nitrogen I-I-I 255543_at At4g01870 tolB protein-related contains weak similarity to TolB protein precursor (Swiss-Prot: P44677) [Haemophilus influenzae] induction (68417.m00245) 29 (A) Inorganic Nitrogen I-I-I 254926_at At4g11280 1-aminocyclopropane-1-carboxylate synthase 6/ACC synthase 6 (ACS6) identical to GI: 3746125 (68417.m01824) induction 30 (A) Inorganic Nitrogen I-I-I 254158_at At4g24380 expressed protein contains Pfam profile: PF03959 domain of unknown function (DUF341) (68417.m03496) induction 31 (A) Inorganic Nitrogen I-I-I 253915_at At4g27280 calcium-binding EF hand family protein similar to EF-hand Ca2+-binding protein CCD1 [Triticum aestivum] GI: 9255753; contains induction INTERPRO: IPR002048 calcium-binding EF-hand domain (68417.m03915) 32 (A) Inorganic Nitrogen I-I-I 253872_at At4g27410 no apical meristem (NAM) family protein (RD26) contains Pfam PF02365: No apical meristem (NAM) domain; Arabidopsis thaliana induction nap gene, PID: e1234813; identical to cDNA RD26 mRNA for NAM-like protein GI: 1046270 fom [Arabidopsis thaliana] (68417.m05078) 33 (A) Inorganic Nitrogen I-I-I 253161_at At4g35770 senescence-associated protein (SEN1) identical to senescence-associated protein GI: 1046270 from [Arabidopsis thaliana] induction (68417.m05078) 34 (A) Inorganic Nitrogen I-I-I 253046_at At4g37370 cytochrome P450, putative similar to Cytochrome P450 91A1 (SP: Q9FG65)[Arabidopsis thaliana]; cytochrome P450, Glycyrrhiza induction echinata, AB001379 (68417.m05292) 35 (A) Inorganic Nitrogen I-I-I 252908_at At4g39670 expressed protein (68417.m05610) induction 36 (A) Inorganic Nitrogen I-I-I 252671_at At3g44190 pyridine nucleotide-disulphide oxidoreductase family protein low similarity to dihydrolipoamide dehydrogenase from Clostridium induction magnum [GI: 472330]; contains Pfam profile PF00070 Pyridine nucleotide-disulphide oxidoreductase domain (68416.m04738) 37 (A) Inorganic Nitrogen I-I-I 252234_at At3g49780 phytosulfokines 3 (PSK3) identical to phytosulfokines 3 (PSK3) SP: Q9M2Y0 from [Arabidopsis thaliana] (68418.m05443) induction 38 (A) Inorganic Nitrogen I-I-I 250781_at At5g05410 DRE-binding protein (DREB2A) identical to DREB2A GI: 3738230 from [Arabidopsis thaliana]; supported by induction cDNA: gi_3738229_dbj_AB007790.1 AB007790 (68418.m00583) 39 (A) Inorganic Nitrogen I-I-I 250351_at At5g12030 17.7 kDa class II heat shock protein 17.6A (HSP17.7-CII) identical to heat shock protein 17.6A GI: 3256075 from [Arabidopsis induction thaliana] (68418.m01406) 40 (A) Inorganic Nitrogen I-I-I 249996_at At5g18600 glutaredoxin family protein contains glutaredoxin domain, INTERPRO: IPR002109 (68418.m02201) induction 41 (A) Inorganic Nitrogen I-I-I 249719_at At5g35735 auxin-responsive family protein similar to auxin-induced protein AIR12 GI: 11357190 [Arabidopsis thaliana] (68418.m04276) induction 42 (A) Inorganic Nitrogen I-I-I 248790_at At5g47450 major intrinsic family protein/MIP family protein contains Pfam profile: MIP PF00230 (68418.m05853) induction 43 (A) Inorganic Nitrogen I-I-I 248164_at At5g54490 calcium-binding EF-hand protein, putative similar to EF-hand Ca2+-binding protein CCD1 [Triticum aestivum] GI: 9255753; contains induction INTERPRO: IPR002048 calcium-binding EF-hand domain (68418.m06785) 44 (A) Inorganic Nitrogen I-I-I 248146_at At5g54940 eukaryotic translation initiation factor SUI1, putative similar to SP|P32911 Protein translation factor SUI1 {Saccharomyces induction cerevisiae}; contains Pfam profile PF01253: Translation initiation factor SUI1 (68418.m06842) 45 (A) Inorganic Nitrogen I-I-I 247655_at At5g59820 zinc finger (C2H2 type) family protein (ZAT12) identical to zinc finger protein ZAT12 [Arabidopsis thaliana] induction gi|1418325|emb|CAA67232 (68418.m07500) 46 (A) Inorganic Nitrogen I-I-I 247488_at At5g61820 expressed protein MtN19, Medicago truncatula, EMBL: MTY15367 (68418.m07757) induction 47 (A) Inorganic Nitrogen I-I-I 247351_at At5g63790 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; contains similarity to NAC- induction domain protein (68418.m08006) 48 (A) Inorganic Nitrogen I-I-I 246744_at At5g27760 hypoxia-responsive family protein contains Pfam profile: PF04588 hypoxia induced protein conserved region (68418.m03329) induction 49 (A) Inorganic Nitrogen I-I-I 246293_at At3g56710 sigA-binding protein identical to SigA binding protein [Arabidopsis thaliana] gi|6980074|gb|AAF34713; contains Pfam PF05678: VQ induction motif (68416.m06308) 50 (A) Inorganic Nitrogen I-I-I 246099_at At5g20230 plastocyanin-like domain-containing protein (68418.m02408) induction 51 (A) Inorganic Nitrogen I-I-I 245734_at At1g73480 hydrolase, alpha/beta fold family protein low similarity to monoglyceride lipase from [Homo sapiens] GI: 14594904, [Mus musculus] induction GI: 2632162; contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68414.m08507) 52 (A) Inorganic Nitrogen I-I-I 245711_at At5g04340 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type (68416.m00426) induction 53 (A) Inorganic Nitrogen I-I-I 245250_at At4g17490 ethylene-responsive element-binding protein, putative similar to SP|O80341 Ethylene responsive element binding factor 5 (AtERF5) induction {Arabidopsis thaliana} (68417.m02617) 54 (A) Inorganic Nitrogen I-I-I 245026_at atpH ATPase III subunit induction 55 (A) Inorganic Nitrogen I-I-I 245006_at psaB PSI P700 apoprotein A2 induction 56 (A) Inorganic Nitrogen I-I-I 245017_at psaI PSI I protein induction 57 (A) Inorganic Nitrogen I-I-I 244961_at ycf5 hypothetical protein induction 58 (A) Inorganic Nitrogen I-I-I 257536_at At3g02800 tyrosine specific protein phosphatase family protein contains tyrosine specific protein phosphatases active site, PROSITE: PS00383 induction (68416.m00272) 59 (A) Inorganic Nitrogen I-I-I 257540_at At3g21520 expressed protein contains Pfam profile PF05078: Protein of unknown function (DUF679) (68416.m02715) induction 60 (A) Inorganic Nitrogen D-D-D 267422_at At2g35050 + 1 protein kinase family protein contains Pfam profile: PF00069 Eukeryotic protein kinase domain (68415.m04300) repression 61 (A) Inorganic Nitrogen D-D-D 266588_at At2g14890 arabinogalactan-protein (AGP9) identical to gi|10880495|gb|AAG24277 (68415.m01692) repression 62 (A) Inorganic Nitrogen D-D-D 266022_at At2g05920 subtilase family protein contains similarity to cucumisin-like serine protease GI: 3176874 from [Arabidopsis thaliana] repression (68415.m00642) 63 (A) Inorganic Nitrogen D-D-D 265733_at At2g01190 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein Pfam profile PF00564: PB1 domain (68415.m00030) repression 64 (A) Inorganic Nitrogen D-D-D 265400_at At2g10940 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to proline-rich cell wall protein [Medicago sativa] repression GI: 3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family (68415.m01167) 65 (A) Inorganic Nitrogen D-D-D 265042_at At1g04040 acid phosphatase class B family protein similar to SP|P15490 STEM 28 kDa glycoprotein precursor (Vegetative storage protein A) repression {Glycine max}, acid phosphatase [Glycine max] GI: 3341443; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase; supporting cDNA gi|13926197|gb|AF370572.1|AF370572 (68414.m00391) 66 (A) Inorganic Nitrogen D-D-D 265028_at At1g24530 transducin family protein/WD-40 repeat family protein similar to Vegetatible incompatibility protein HET-E-1 (SP: Q00808) repression {Podospora anserina}; contains 7 WD-40 repeats (PF00400) (68414.m03088) 67 (A) Inorganic Nitrogen D-D-D 264857_at At1g24170 glycosyl transferase family 6 protein contains Pfam profile: PF01501 glycosyl transferase family 8 (68414.m03049) repression 68 (A) Inorganic Nitrogen D-D-D 264348_at At1g12110 nitrate/chlorate transporter (NRT1.1) (CHL1) identical to nitrate/chlorate transporter SP: Q05085 from [Arabidopsis thaliana]; repression contains Pfam profile: PF00854 POT family (68414.m01402) 69 (A) Inorganic Nitrogen D-D-D 264335_s_at At1g70320 ubiquitin-protein figase 2 (UPL2) nearly identical to ubiquitin-protein ligase 2 [Arabidopsis thaliana] GI: 7108523; E3, HECT-domain repression protein family; similar to ubiquitin-protein ligase 2 GI: 7108523 from [Arabidopsis thaliana] (68414.m08090) 70 (A) Inorganic Nitrogen D-D-D 264309_at At1g62020 coatomer protein complex, subunit alpha, putative contains Pfam PF00400: WD domain, G-beta repeat; similar to Coatomer alpha repression subunit (Alpha-coat protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP: P53621) [Homo sapiens] (68414.m06995) 71 (A) Inorganic Nitrogen D-D-D 264260_at At1g09210 calreticulin 2 (CRT2) identical to SP|Q38858 Calreticulin 2 precursor {Arabidopsis thaliana} (68414.m01028) repression 72 (A) Inorganic Nitrogen D-D-D 264261_at At1g09240 nicotianamine synthase, putative similar to nicotianamine synthase [Lycopersicon esculentum][GI: 4753801], nicotianamine repression synthase 2 [Hordeum vulgare][GI: 4894912] (68414.m01031) 73 (A) Inorganic Nitrogen D-D-D 263989_at At2g42880 mitogen-activated protein kinase, putative/MAPK, putative (MPK20) mitogen-activated protein kinase (MAPK)(AtMPK20), repression PMID: 12119167 (68415.m05309) 74 (A) Inorganic Nitrogen D-D-D 263838_at At2g36880 S-adenosylmethionine synthetase, putative similar to S-adenosylmethionine synthetase 3 (Methionine adenosyltransferase 3. repression AdoMet synthetase 3) [Lycopersicon esculentum] SWISS-PROT: P43282 (68415.m04521) 75 (A) Inorganic Nitrogen D-D-D 263836_at At2g40330 Bet v I allergen family protein contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family (68415.m04972) repression 76 (A) Inorganic Nitrogen D-D-D 263662_at At1g04430 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] repression GI: 15320410; contains Pfam profile PF03141: Putative methyltransferase (68414.m00434) 77 (A) Inorganic Nitrogen D-D-D 263590_at At2g01820 leucine-rich repeat protein kinase, putative similar to protein kinase TMK1 gi|186888|gb|AAA32876; contains Pfam domains repression PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain (68415.m00113) 78 (A) Inorganic Nitrogen D-D-D 263326_at At2g04280 expressed protein (68415.m00420) repression 79 (A) Inorganic Nitrogen D-D-D 263153_s_at At1g54010 myrosinase-associated protein, putative similar to myrosinase-associated protein GI: 1769969 from [Brassica napus]; contains Pfam repression profile PF00657: Lipase/Acylhydrolase with GDSL-like motif (68414.m06153) 80 (A) Inorganic Nitrogen D-D-D 262504_at At1g21750 protein disulfide isomerase, putative similar to SP|P29828 Protein disulfide isomerase precursor (PDI) (EC 5.3.4.1) {Medicago repression sativa}; isoform contains non-consensus GA donor splice site at intron 9 (68414.m02722) 81 (A) Inorganic Nitrogen D-D-D 262373_at At1g73120 expressed protein (68414.m08454) repression 82 (A) Inorganic Nitrogen D-D-D 261728_at At1g76160 multi-copper oxidase type I family protein similar to pollen-specific BP10 protein [SP|Q00624][Brassica napus]; contains Pfam repression profile: PF00394 Multicopper oxidase (68414.m08844) 83 (A) Inorganic Nitrogen D-D-D 261598_at At1g49750 leucine-rich repeat family protein contains leucine-rich repeats, Pfam: PF00560 (68414.m05579) repression 84 (A) Inorganic Nitrogen D-D-D 261198_at At1g12940 high-affinity nitrate transporter, putative similar to trans-membrane nitrate transporter protein AtNRT2:1 [Arabidopsis thaliana] repression GI: 3747058, high-affinity nitrate transporter ACH1 [Arabidopsis thaliana] GI: 3608362 (68414.m01503) 85 (A) Inorganic Nitrogen D-D-D 261053_at At1g01320 tetratricopeptide repeat (TPR)-containing protein low similarity to SP|P46825 Kinesin light chain (KLC) {Loligo pealeii}; contains repression Pfam profile PF00515: TPR Domain (68414.m00048) 86 (A) Inorganic Nitrogen D-D-D 261055_at At1g01300 aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease (68414.m00046) repression 87 (A) Inorganic Nitrogen D-D-D 260623_at At1g08090 high-affinity nitrate transporter (ACH1) identical to trans-membrane nitrate transporter protein AtNRT2:1 [Arabidopsis thaliana] repression GI: 3747058, high-affinity nitrate transporter ACH1 [Arabidopais thaliana] GI: 3608362 (68414.m00885) 88 (A) Inorganic Nitrogen D-D-D 259969_at At1g76550 pyrophosphate-fructose-6-phosphate 1-phosphotransferase alpha subunit, putative/pyrophosphate-dependent 6- repression phosphofructose-1-kinase, putative strong similarity to SP|Q41140 Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit (EC 2.7.1.90) (PFP) (PPI-PFK) {Ricinus communis}; contains Pfam profile PF00365: Phosphofructokinase (68414.m08908) 89 (A) Inorganic Nitrogen D-D-D 259813_at At1g49860 glutathione S-transferase, putative similar to GI: 860955 from [Hyoscyamus muticus] (Plant Physiol. 109 (1), 253-260 (1995)) repression (68414.m05590) 90 (A) Inorganic Nitrogen D-D-D 259771_at At1g29470 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] repression GI: 15320410; contains Pfam profile PF03141: Putative methyltransferase (68414.m03605) 91 (A) Inorganic Nitrogen D-D-D 259786_at At1g29660 GDSL-motif lipase/hydrolase family protein low similarity to family II lipase EXL1 [Arabidopsis thaliana] GI: 15054382, contains repression InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family (68414.m03625) 92 (A) Inorganic Nitrogen D-D-D 259757_at At1g77510 protein disulfide isomerase, putative similar to protein disulfide isomerase precursor GB: P29828 GI: 4704786 [Medicago sativa]; repression Pfam HMM hit: PF00085 Thioredoxins (68414.m09026) 93 (A) Inorganic Nitrogen D-D-D 259343_s_at At3g03780 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative/vitamin-B12-independent methionine synthase, repression putative/cobalamin-independent methionine synthase, putative very strong similarity to SP|O50008 5- methyltetrahydropteroyltriglutamate-homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}; contains Pfam profile PF01717: Methionine synthase, vitamin-B12 independent (68416.m00386) 94 (A) Inorganic Nitrogen D-D-D 259279_at At3g01120 cystathionine gamma-synthase, chloroplast/O-succinylhomoserine (Thiol)-lyase (CGS) identical to SP|P55217 Cystathionine repression gamma-synthase, chloroplast precursor (EC 4.2.99.9) (CGS) (O-succinylhomoserine (Thiol)-lyase) {Arabidopsis thaliana} (68418.m00016) 95 (A) Inorganic Nitrogen D-D-D 259072_at At3g11700 beta-Ig-H3 domain-containing protein/fasciclin domain-containing protein contains Pfam profile PF02469: Fascictin domain repression (68416.m01434) 96 (A) Inorganic Nitrogen D-D-D 259018_at At3g07390 auxin-responsive protein/auxin-induced protein (AIR12) identical (with 7 residue gap) to auxin-induced protein AIR12 GI: 11357190 repression [Arabidopsis thaliana] (68416.m00881) 97 (A) Inorganic Nitrogen D-D-D 258415_at At3g17390 S-adenosylmethionine synthetase, putative similar to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, repression AdoMet synthetase 2) [Catharanthus roseus] SWISS-PROT: Q96552 (68418.m02222) 98 (A) Inorganic Nitrogen D-D-D 257173_at At3g23810 adenosylhomocysteinase, putative/S-adenosyl-L-homocysteine hydrolase, putative/AdoHcyase, putative strong similarity to repression SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Nicotiana sylvestris}; contains Pfam profile PF00670: S-adenosyl-L-homocysteine hydrolase, NAD binding domain (68416.m02993) 99 (A) Inorganic Nitrogen D-D-D 257071_at At3g28180 glycosyl transferase family 2 protein similar to beta-(1-3)-glucosyl transferase GB: AAC62210 GI: 3687658 from [Bradyrhizobium repression japonicum], cellulose synthase from Agrobacterium tumeficiens [gi: 710492] and Agrobacterium radiobacter [gi: 710493]; contains Pfam glycosyl transferase, group 2 family protein domain PF00535 (68416.m03521) 100 (A) Inorganic Nitrogen D-D-D 256847_at Atg13610 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to desacetoxyvindoline 4-hydroxylase [Catharanthus repression roseus][GI: 1916643], flavonol synthase 1 [SP|Q96330]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain (68416.m01713) 101 (A) Inorganic Nitrogen D-D-D 256482_at At1g31420 leucine-rich repeat transmembrane protein kinase, putative contains Pfam profile: PF00069: Eukaryotic protein kinase domain repression (68414.m03848) 102 (A) Inorganic Nitrogen D-D-D 256216_at At1g56340 calreticulin 1 (CRT1) identical to calreticulin (crt1) GI: 2052379 [Arabidopsis thaliana] (68414.m06476) repression 103 (A) Inorganic Nitrogen D-D-D 256224_at At1g56330 GTP-binding protein (SAR1B) identical to GTP-binding protein (SAR1B) [Arabidopsis thaliana] SP: Q01474 (68414.m06475) repression 104 (A) Inorganic Nitrogen D-D-D 255595_at At4901700 chitinase, putative similar to peanut type II chitinase GI: 1237025 from [Arachis hypogaea] (68417.m00221) repression 105 (A) Inorganic Nitrogen D-D-D 255474_at At4g02470 repression 106 (A) Inorganic Nitrogen D-D-D 255492_at At4g02680 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515 TPR Domain (68417.m00363) repression 107 (A) Inorganic Nitrogen D-D-D 255068_at At4g08920 cryptochrome 1 apoprotein (CRY1)/flavin-type blue-light photoreceptor (HY4) contains Pfam PF03441: FAD binding domain of repression DNA photolyase; member of Pfam PF00875: deoxyribodipyrimidine photolyase superfamily; 99% identical to Cryptochrome 1 apoprotein (Blue light photoreceptor) (flavin-type blue-light photoreceptor) (SP: Q43125) [Arabidopsis thaliana] (68417.m01469) 108 (A) Inorganic Nitrogen D-D-D 254925_at At4g11380 beta-adaptin, putative strong similarity to SP|Q10567 Adapter-related protein complex 1 beta 1 subunit (Beta-adaptin 1) [Homo repression sapiens], beta-adaptin [Drosophila melanogaster] GI: 434902; contains Pfam profile: PF01602 Adaptin N terminal region (68417.m01835) 109 (A) Inorganic Nitrogen D-D-D 254805_at At4g12480 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein identical to pEARLI 1 (Accession No. L43080): an repression Arabidopsis member of a conserved gene family (PGF95-099), Plant Physiol. 109 (4), 1497 (1995); contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 (68417.m01973) 110 (A) Inorganic Nitrogen D-D-D 254785-at At4g12730 fasciclin-like arabinogalactan-protein (FLA2) identical to gi_13377778_gb_AAK20858 (68417.m01999) repression 111 (A) Inorganic Nitrogen D-D-D 254740_s_at At4g13890 glycine hydroxymethyltransferase, putative/serine hydroxymethyltransferase, putative/serine/threonine aldolase, putative similar repression to serine hydroxymethyltransferase [Chlamydomonas reinhardtii] GI: 17066746; contains Pfam profile PF00484: serine hydroxymethyltransferase (68417.m02152) 112 (A) Inorganic Nitrogen D-D-D 254564_at At4g19170 9-cis-epoxycarotenoid dioxygenase, putative/neoxanthin cleavage enzyme, putative/carotenoid cleavage dioxygenase, putative repression similar to 9-cis-epoxycarotenoid dioxygenase [Phaseolus vulgaris][GI: 6715257]: neoxanthin cleavage enzyme, Lycopersicon esculentum, PATX: E325797 (68417.m02829) 113 (A) Inorganic Nitrogen D-D-D 254166_at At4g24190 shepherd protein (SHD)/clavata formation protein, putative nearly identical to SHEPHERD [Arabidopsis thaliana] GI: 19570872; repression contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein (68417.m03472) 114 (A) Inorganic Nitrogen D-D-D 253887_at At4g27730 oligopeptide transporter OPT family protein similar to SP|P40900 Sexual differentiation process protein isp4 {Schizosaccharomyces repression pombe}, oligopeptide transporter Opt1p [Candida albicans] GI: 2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein (68417.m03985) 115 (A) Inorganic Nitrogen D-D-D 253609_at At4g30190 ATPase 2, plasma membrane-type, putative/proton pump 2, putative/proton-exporting ATPase, putative strong similarity to repression SP|P19456 ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00690: Cation transporter/ATPase, N-terminus (68417.m04292) 116 (A) Inorganic Nitrogen D-D-D 253534_at At4g31500 cytochrome P450 83B1 (CYP83B1) Identical to Cytochrome P450 (SP: O65782)[Arabidopsis thaliana] (68417.m04474) repression 117 (A) Inorganic Nitrogen D-D-D 253050_at At4g37450 arabinogalactan-protein (AGP18) identical to gi_11935088_gb_AAG41964 (68417.m05301) repression 118 (A) Inorganic Nitrogen D-D-D 252971_at At4g38770 proline-rich family protein (PRP4) similar to proline-rich protein [Arabidopsis thaliana] gi|6782442|gb|AAF28388; contains proline- repression rich extensin domains, INTERPRO: IPR002965 (68417.m05490) 119 (A) Inorganic Nitrogen D-D-D 252831_at At4g39980 2-dehydro-3-deoxyphosphoheptonate aldolase 1/3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1/DAHP synthetase 1 repression (DHS1) nearly identical to SP|P29965 (68417.m05662) 120 (A) Inorganic Nitrogen D-D-D 252255_at At3949220 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase (68416.m05379) repression 121 (A) Inorganic Nitrogen D-D-D 251918_at At3g54040 photoassimilate-responsive protein-related contains weak similarity to mRNA inducible by sucrose and salicylic acid expressed in repression sugar-accumulating tobacco plants (GI: 871487) [Nicotiana tabacum] (68416.m05975) 122 (A) Inorganic Nitrogen D-D-D 251899_at At3g54400 aspartyl protease family protein contains Pfam profile: PF00026 eukaryotic aspartyl protease (68416.m06015) repression 123 (A) Inorganic Nitrogen D-D-D 251847_at At3g54640 tryptophan synthase, alpha subunit (TSA1) identical to gi: 619753 (68416.m06045) repression 124 (A) Inorganic Nitrogen D-D-D 251413_at At3g60320 expressed protein contains Pfam profiles: PF04782: protein of unknown function (DUF632), PF04783: protein of unknown function repression (DUF630) (68416.m06742) 125 (A) Inorganic Nitrogen D-D-D 251287_at At3g61820 aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease (68416.m06939) repression 126 (A) Inorganic Nitrogen D-D-D 251182_at At3g62800 DNAJ heat shock family protein similar to DnaJ homolog subfamily B member 11 precursor (SP: Q99KV1)[Mus musculus]; contains repression Pfam PF00226: DnaJ domain; contains PfaPF01556: DnaJ C terminal regionm (68416.m07032) 127 (A) Inorganic Nitrogen D-D-D 251174_at At3g63200 patatin-related low similarity to patatin-like latex protein allergen Hev b 7 - Hevea brasiliensis, EMBL: AF113546; contains patatin repression domain PF01734 (68416.m07100) 128 (A) Inorganic Nitrogen D-D-D 251109_at At5g01600 ferritin 1 (FER1) identical to ferritin [Arabidopsis thaliana] GI: 1246401, GI: 8163920 (68418.m00075) repression 129 (A) Inorganic Nitrogen D-D-D 250437_at At5g10430 arabinogalactan-protein (AGP4) identical to gi_3883126_gb_AAC77826 (68418.m01209) repression 130 (A) Inorganic Nitrogen D-D-D 250207_at At5g13930 chalcone synthase/naringenin-chalcone synthase identical to SP|P13114 (68418.m01629) repression 131 (A) Inorganic Nitrogen D-D-D 250100_at At5g16570 glutamine synthetase, putative similar to glutamine synthetase, cytosolic isozyme (glutamate-ammonia lipase) [Alfalfa] SWISS- repression PROT: P04078 (68418.m01939) 132 (A) Inorganic Nitrogen D-D-D 249867_at At5g23020 2-isopropylmalate synthase 2 (IMS2) identical to 2-isopropylmalate synthase (IMS2) [Arabidopsis thaliana] GI: 12330689 repression (68416.m02691) 133 (A) Inorganic Nitrogen D-D-D 249812_at At5g23830 MD-2-related lipid recognition domain-containing protein/ML domain-containing protein contains Pfam profile PF02221: ML repression domain (68418.m02797) 134 (A) Inorganic Nitrogen D-D-D 249677_at At5g35970 DNA-binding protein, putative similar to SWISS-PROT: Q60560 DNA-binding protein SMUBP-2 (Immunoglobulin MU binding repression protein 2, SMUBP-2) [Mesocricetus auratus] (68418.m04332) 135 (A) Inorganic Nitrogen D-D-D 249581_at At5g37600 glutamine synthetase, putative similar to glutamine synthetase, cytosolic isozyme (Glutamate-ammonia ligase, GS1) [Lotus repression japonicus] SWISS-PROT: Q42899 (68418.m04529) 136 (A) Inorganic Nitrogen D-D-D 249037_at At5g44130 fasciclin-like arabinogalactan-protein, putative similar to gi_13377784_gb_AAK20861 (68418.m05401) repression 137 (A) Inorganic Nitrogen D-D-D 248942_at At5g45480 expressed protein contains Pfam domain, PF04578: Protein of unknown function, DUF594 (68418.m05587) repression 138 (A) Inorganic Nitrogen D-D-D 248721_at At5g47780 glycosyl transferase family 8 protein contains Pfam profile: PF01501 glycosyl transferase family 8; strong similarity to unknown repression protein (emb|CAB71043.1) (68418.m05902) 139 (A) Inorganic Nitrogen D-D-D 248703_at At5g48430 expressed protein low similarity to extracellular dermal glycoprotein EDGP precursor [Daucus carota] GI: 285741, SP|P13917 Basic repression 7S globulin precursor {Glycine max}; expression supported by MPSS (68418.m05988) 140 (A) Inorganic Nitrogen D-D-D 248252_at At5g53250 arabinogalactan-protein, putative (AGP22) similar to arabinogalactan protein [Arabidopsis thaliana] gi|10880509|gb|AAG24284 repression (68418.m06819) 141 (A) Inorganic Nitrogen D-D-D 248118_at At5g55050 GDSL-motif lipase/hydrolase family protein similar to family II lipases EXL3 GI: 15054386, EXL1 GI: 15054382, EXL2 GI: 15054384 repression from [Arabidopsis thaliana]; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase (68418.m06861) 142 (A) Inorganic Nitrogen D-D-D 248037_at At5g55930 oligopeptide transporter OPT family protein similar to SP|P40900 Sexual differentiation process protein isp4 {Schizosaccharomyces repression pombe}, oligopeptide transporter Opt1p [Candida albicans] GI: 2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein (68418.m06976) 143 (A) Inorganic Nitrogen D-D-D 247517_at At5g61780 tudor domain-containing protein/nuclease family protein contains Pfam domains PF00567: Tudor domain and PF00565: repression Staphylococcal nuclease homologue (68418.m07753) 144 (A) Inorganic Nitrogen D-D-D 247492_at At5g61890 AP2 domain-containing transcription factor family protein similar to RAP2.6 (GP: 17065542) {Arabidopsis thaliana}; AP2 domain repression containing protein, Arabidopsis thaliana, EMBL: ATAF3099 (68418.m07764) 145 (A) Inorganic Nitrogen D-D-D 247494_at At5g61790 calnexin 1 (CNX1) identical to calnexin homolog 1, Arabidopsis thaliana, EMBL: AT08315 [SP|P29402] (68418.m07754) repression 146 (A) Inorganic Nitrogen D-D-D 247480_at At5g62390 calmodulin-binding family protein contains IQ calmodulin-binding motif, Pfam: PF00612 (68418.m07830) repression 147 (A) Inorganic Nitrogen D-D-D 247189_at At5g65390 arabinogalacten-protein (AGP7) (68418: m08224) repression 148 (A) Inorganic Nitrogen D-D-D 246935_at At5g25350 F-box family protein contains Pfam PF00646: F-box domain and Pfam PF00560: Leucine Rich Repeat (6 copies); similar to F-box repression protein FBL6 (GI: 4432860) [Homo sapiens] (68418.m03007) 149 (A) Inorganic Nitrogen D-D-D 246855_at At5g26280 meprin and TRAF homology domain-containing protein/MATH domain-containing protein low similarity to ubiquitin-specific repression protease 12 [Arabidopsis thaliana] GI: 11993471; contains Pfam profile PF00917: MATH domain (68418.m03137) 150 (A) Inorganic Nitrogen D-D-D 246510_at At5g15410 cyclic nucleotide-regulated ion channel/cyclic nucleotide-gated channel (CNGC2) identical to cyclic nucleotide-gated cation repression channel GI: 3894399 from [Arabidopsis thaliana] (68418.m01803) 151 (A) Inorganic Nitrogen D-D-D 245956_s_at At5g28540 luminal binding protein 1 (BiP-1) (BP1) SWISS-PROT: Q9LKR3 PMID: 8888624 (68418.m03480) repression 152 (A) Inorganic Nitrogen D-D-D 245915_s_at At5g19770 tubulin alpha-3/alpha-5 chain (TUA3) nearly identical to SP|P20383 Tubulin alpha-3/alpha-5 chain {Arabidopsis thaliana} repression (68418.m02350) 153 (A) Inorganic Nitrogen D-D-D 245874_at At1g26250 proline-rich extensin, putative similar to extensin gi|1165322|gb|AAB53156; contains proline-rich extensin domains, repression INTERPRO: IPR002965 (68414.m03202) 154 (A) Inorganic Nitrogen D-D-D 245688_at At1g28290 pollen Ole e 1 allergen and extensin family protein similar to arabinogalactan protein [Daucus carota] GI: 11322245; contains Pfam repression profile PF01190: Pollen proteins Ole e I family (68414.m03472) 155 (A) Inorganic Nitrogen D-D-D 245281_at At4g15560 1-deoxy-D-xylulose 5-phosphate synthase, putative/1-deoxyxylulose-5-phosphate synthase, putative/DXP-synthase, putative repression (DEF) (CLA1) identical to SP|Q38854 Probable 1-deoxy-D-xylulose 5-phosphate synthase, chloroplast precursor (EC 4.1.3.37) (1- deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS). [Mouse-ear cress] {Arabidopsis thaliana}, DEF (deficient in photosynthesis) protein [Arabidopsis thaliana] GI: 1399261 (68417.m02377) 156 (A) Inorganic Nitrogen D-D-D 245293_at At4g16660 heat shock protein 70, putative/HSP70, putative (68417.m02517) repression 157 (A) Inorganic Nitrogen D-D-D 245175_at At2g47470 thioredoxin family protein similar to protein disulfide isomerase [Dictyostelium discoideum] GI: 2627440; contains Pfam profile: repression PF00085 Thioredoxin (68415.m05924) 158 (A) Inorganic Nitrogen D-D-D 245012_at ndhC NADH dehydrogenase D3 repression 159 (A) Inorganic Nitrogen D-D-D 244984_at rps3 chloropl ribosomal protein S3 repression 1 (B) Inorganic Nitrogen I-I-NC 266296_at At2g29420 glutathione S-transferase, putative (68415.m03575) induction and external 2 (B) Inorganic Nitrogen I-I-NC 265499_at At2g15480 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl induction and external transferase (68415.m01771) 3 (B) Inorganic Nitrogen I-I-NC 263046_at At2g05380 glycine-rich protein (GRP3S) identical to cDNA glycine-rich protein 3 short isoform (GRP3S) GI: 4206766 (68415.M00566) induction and external 4 (B) Inorganic Nitrogen I-I-NC 262119_s_at At1g02930 glutathione S-transferase, putative similar to glutathione S-transferase GI: 860955 from [Hyoscyamus muticus] (68414.m00260) induction and external 5 (B) Inorganic Nitrogen I-I-NC 260602_at At1g55920 serine O-acetyltransferase, putative identical to GI: 608677 from [Arabidopsis thaliana] (68414.m06414) induction and external 6 (B) Inorganic Nitrogen I-I-NC 259875_s_at At1g76690 12-oxophytodienoate reductase (OPR2) identical to 12-oxophytodienoate reductase OPR2 GB: AAC78441 [Arabidopsis thaliana] induction and external (68414.m08924) 7 (B) Inorganic Nitrogen I-I-NC 259428_at At1g01560 mitogen-activated protein kinase, putative/MAPK, putative (MPK11) similar to MAP kinase 5 GI: 4239889 from [Zea mays]; mitogen induction and external activated protein kinase (MAPK)(AtMPK11), PMID: 12119167 (68414.m00073) 8 (B) Inorganic Nitrogen I-I-NC 256245_at At3g12580 heat shock protein 70, putative/HSP70, putative strong similarity to heat shock protein GI: 425194 [Spinacia olerecea] induction and external (68416.m01567) 9 (B) Inorganic Nitrogen I-I-NC 254256_at At4g23180 receptor-like protein kinase 4, putative (RLK4) nearly identical to receptor-like protein kinase 4 [Arabidopsis thaliana] GI: 13506745; induction and external contains Pfam domain, PF00069: Protein kinase domain; identical to cDNA receptor-like protein kinase 4 (RLK4) GI: 13506744 (68417.m03344) 10 (B) Inorganic Nitrogen I-I-NC 253268_s_at At4g34135 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl induction and external transferase (68417.m04842) 11 (B) Inorganic Nitrogen I-I-NC 252037_at At3g51920 calmodulin-9 (CAM9) identical to calmodulin 9 GI: 5825602 from [Arabidopsis thaliana]; contains Pfam profile PF00036: EF hand induction and external (68416.m05695) 12 (B) Inorganic Nitrogen I-I-NC 248657_at At5g48570 peptidyl-prolyl cis-trans isomerase, putative/FK506-binding protein, putative similar to rof1 [Arabidopsis thaliana] GI: 1373396 induction and external (68418.m06007) 13 (B) Inorganic Nitrogen I-I-NC 247218_at At5g65010 asparagine synthetase 2 (ASN2) identical to asparagine synthetase (ASN2) [Arabidopsis thaliana] GI: 3859536 (68418.m08177) induction and external 14 (B) Inorganic Nitrogen I-I-NC 245252_at At4g17500 ethylene-responsive element-binding protein 1 (ERF1)/EREBP-2 protein identical to SP|O80337 Ethylene responsive element induction and external binding factor 1 (EREBP-2 protein) [Arabidopsis thaliana]; a false single by exon was added to circumvent a single basepair insertion in the genomic sequence, supported by cDNA/genome alignment. (68417.m02618) 15 (B) Inorganic Nitrogen I-I-NC 245011_at psbG photosystem II G protein induction and external 16 (B) Inorganic Nitrogen D-D-I 267147_at At2g38240 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to flavonol synthase [Citrus unshiu][gi: 4126403], leucoanthocyanidin repression and extern

dioxygenase [Daucus carota][gi: 5924383]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain (68415.m04696) 17 (B) Inorganic Nitrogen D-D-I 263497_at At2g42540 cold-responsive protein/cold-regulated protein (cor15a) identical to cold-regulated protein cor15a [Arabidopsis thaliana] repression and extern

GI: 507149; contains Pfam profile PF02987: Late embryogenesis abundant protein (68415.m05264) 18 (B) Inorganic Nitrogen D-D-I 251770_at At3g55970 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to leucoanthocyanidin dioxygenase, Malus domestics, SP|P51091; repression and extern

contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family (68416.m06219) 19 (B) Inorganic Nitrogen D-D-NC 266743_at At2g02990 ribonuclease 1 (RNS1) identical to ribonuclease SP: P42813 Ribonuclease 1 precursor (EC 3.1.27.1) {Arabidopsis thaliana} repression and extern

GI: 561998 from [Arabidopsis thaliana] (68415.m00251) 20 (B) Inorganic Nitrogen D-D-NC 266225_at At2g28900 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein contains Pfam PF02466: repression and extern

Mitochondrial import inner membrane translocase subunit Tim17 (68415.m03512) 21 (13) Inorganic Nitrogen D-D-NC 265411_at At2g16630 proline-rich family protein contains proline-rich extensin domains, INTERPRO: IPR002965 (68415.m01909) repression and extern

22 (B) Inorganic Nitrogen D-D-NC 265414_at At2g16660 nodulin family protein similar to nodulin-like protein [Arabidopsis thaliana] GI: 3329368, nodule-specific protein Nlj70 [Lotus repression and extern

japonicus] GI: 3329366 (68415.m01912) 23 (B) Inorganic Nitrogen D-D-NC 264611_at At1g04680 pectate lyase family protein similar to pectate lyase GP: 14531296 from [Fregaria x ananassa] (68414.m00465) repression and extern

24 (B) Inorganic Nitrogen D-D-NC 262784_at At1g10760 starch excess protein (SEX1) identical to SEX1 [Arabidopsis thaliana] GI: 12044358: supporting cDNA repression and extern

gi|12044357|gb|AF312027.1|AF312027 (68414.m01231) 25 (B) Inorganic Nitrogen D-D-NC 262068_at At1g80070 splicing factor, putative strong similarity to splicing factor Prp8 [Homo sapiens] GI: 3661610; contains Pfam profile PF01398: repression and extern

Mov34/MPN/PAD-1 family (68414.m09373) 28 (B) Inorganic Nitrogen D-D-NC 261485_at At1g14360 UDP-galactose/UDP-glucose transporter, putative very similar to UDP-galactose/UDP-glucose transporter (GI: 22651763) repression and extern

{Arabidopsis thaliana} (68414.m01702) 27 (B) Inorganic Nitrogen D-D-NC 259936_at At1g71220 UDP-glucose:glycoprotein glucosyltransferase, putative similar to UDP-glucose:glycoprotein glucosyltransferase precursor repression and extern

GB: Q09332 [SP|Q09332] from Drosophila melanogaster, [gi: 7670748] and [gi: 11346464] from Homo sapiens (68414.m08219) 28 (B) Inorganic Nitrogen D-D-NC 259789_at At1g29395 stress-responsive protein, putative similar to cold acclimation WCOR413-like protein gamma form [Hordeum vulgare] repression and extern

gi|18449100|gb|AAL69988; similar to stress-regulated protein SAP1 [Xerophyta viscose] gi|21360378|gb|AAM47505 (68414.m03595) 29 (B) Inorganic Nitrogen D-D-NC 259640_at At1g52400 glycosyl hydrolase family 1 protein/beta-glucosidase, putative (BG1) contains Pfam PF00232: Glycosyl hydrolase family 1 repression and extern

domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to GI: 6651430 from [Arabidopsis thaliana] (68414.m05913) 30 (B) Inorganic Nitrogen D-D-NC 259553_x_at At1g21310 proline-rich extensin-like family protein contains extensin-like region, Pfam: PF04554 (68414.m02662) repression and extern

31 (B) Inorganic Nitrogen D-D-NC 258040_at At3g21190 expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; repression and extern

(68416.m02678) 32 (B) Inorganic Nitrogen D-D-NC 257202_at At3g23750 leucine-rich repeat family protein/protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat and repression and extern

PF00069: Protein kinase domain (68416.m02986) 33 (B) Inorganic Nitrogen D-D-NC 256787_at At3g13790 beta-fructosidase (BFRUCT1)/beta-fructofuranosidase/cell wall invertase identical to beta-fructofuranosidase GI: 402740 from repression and extern

[Arabidopsis thaliana] (68416.m01742) 34 (B) Inorganic Nitrogen D-D-NC 255942_at At1g22360 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl repression and extern

transferase (68414.m02797) 35 (B) Inorganic Nitrogen D-D-NC 254832_at At4g12490 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to pEARLI 1 (Accession No. L43080): an repression and extern

Arabidopsis member of a conserved gene family (PGF95-099), Plant Physiol 109 (4), 1497 (1995); contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 (88417.m01974) 36 (B) Inorganic Nitrogen D-D-NC 254468_at At4g20460 NAD-dependent epimerase/dehydratase family protein similar to UDP-galactose 4-epimerase from Cyamopsis tetragonoloba repression and extern

GI: 3021357 [EMBL: AJ005082], Bacillus subtilis SP|P55180; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family (68417.m02985) 37 (B) Inorganic Nitrogen D-D-NC 254361_at At4g22212 expressed protein (68417.m03211) repression and extern

38 (B) Inorganic Nitrogen D-D-NC 252618_at At3g45140 lipoxygenase (LOX2) identical to SP|P38418 (68416.m04872) repression and extern

39 (B) Inorganic Nitrogen D-D-NC 252066_at At3g51550 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68416.m05645) repression and extern

40 (B) Inorganic Nitrogen D-D-NC 251513_at At3g59220 pirin, putative similar to SP|O00625 Pirin {Homo sapiens}; contains Pfam profile PF02678: Pirin (68416.m06602) repression and extern

41 (B) Inorganic Nitrogen D-D-NC 251390_at At3g60860 guanine nucleotide exchange family protein similar to guanine nucleotide exchange factor, Homo sapiens, GI: 5456754; contains repression and extern

Pfam profile PF01369: Sec7 domain (68416.m06808) 42 (B) Inorganic Nitrogen D-D-NC 250930_at At5g03160 DNAJ heat shock N-terminal domain-containing protein similar to P58 protein. Bos primigenius taurus, PIR: A56534; similar to p58 repression and extern

(GI: 1353270) {Homo sapiens}; contains Pfam PF00226: DnaJ domain; contains Pfam PF00515: TPR Domain (68418.m00264) 43 (B) Inorganic Nitrogen D-D-NC 250690_at At5g06530 ABC transporter family protein (68418.m00736) repression and extern

44 (B) Inorganic Nitrogen D-D-NC 250661_at At5g07030 aspartyl protease family protein contains Pfam profile: PF00026 eukaryotic aspartyl protease (68418.m00796) repression and extern

45 (B) Inorganic Nitrogen D-D-NC 250662_at At5g07010 sulfotransferase family protein similar to steroid sulfotransferase 3 [Brassica napus] GI: 3420008, steroid sulfotransferase 1 repression and extern

[Brassica napus] GI: 3420004; contains Pfam profile PF00685: Sulfotransferase domain (68418.m00794) 46 (B) Inorganic Nitrogen D-D-NC 247552_at At5g60920 phytochetatin synthetase. putative/COBRA cell expansion protein COB, putative similar to phytochelatin synthetase GI: 29570314; repression and extern

similar to GB: AAK56072; identified in Roudier, et al, Plant Phys. (2002) 130: 538-548 (PMID: 12376623); identical to cDNA putative phytochelatin synthetase GI: 3559804, contains Pfam profile PF04833: Phytochelatin synthetase-like conserved region (68418.m07642) 47 (B) Inorganic Nitrogen D-D-NC 247284_at At5g64410 oligopeptide transporter OPT family protein similar to SP|P40900 Sexual differentiation process protein isp4 {Schizosaccharomyces repression and extern

pombe}; contains Pfam profile PF03169: OPT oligopeptide transporter protein (68418.m08091) 48 (B) Inorganic Nitrogen D-D-NC 247251_at At5g64740 cellulose synthase, catalytic subunit, putative similar to gi: 2827141 cellulose synthase catalytic subunit (Ath-A), Arabidopsis repression and extern

thaliana (68418.m08141) 1 (C) Internal Glu induction I-NC-NC 267366_at At2g44310 calcium-binding EF hand family protein contains INTERPRO: IPR002048 calcium-binding EF-hand domain (68415.m05513) 2 (C) Internal Glu induction I-NC-NC 266983_at At2g39400 hydrolase, alpha/beta fold family protein similar to monoglyceride lipase from [Homo sapiens] GI: 14594904, [Mus musculus] GI: 2632162; contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68415.m04835) 3 (C) Internal Glu induction I-NC-NC 266290_at At2929490 glutathione S-transferase, putative similar to glutathione S-transferase 103-1A [Arabidopsis thaliana] SWISS-PROT: P46421 (68416.m03582) 4 (C) Internal Glu induction I-NC-NC 265662_at At2g24500 zinc finger (C2H2 type) family protein contains Pfam profile: PF00098 zinc finger, C2H2 type (68415.m02927) 5 (C) Internal Glu induction I-NC-NC 265116_at At1g62480 vacuolar calcium-binding protein-related contains weak similarity to vacuolar calcium binding protein [Raphanus sativus] gi|9049359|dbj|BAA99394 (68414.m07050) 6 (C) Internal Glu induction I-NC-NC 264561_at At1g55810 uracil phosphoribosyltransferase, putative/UMP pyrophosphorylase, putative/UPRTase, putative similar to SP|O65583 Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}; contains Pfam profile PF00485: Phosphoribulokinase/Uridine kinase family (68414.m06394) 7 (C) Internal Glu induction I-NC-NC 264279_s_at At1g78820 curculin-like (mannose-binding) lectin family protein/PAN domain-containing protein similar to S locus glycoprotein [Brassica rapa] GI: 12246840; contains Pfam profile PF01453: Lectin (probable mannose binding) (68414.m09188) 8 (C) Internal Glu induction I-NC-NC 263866_at At2g36950 heavy-metal-associated domain-containing protein nearly identical to famesylated protein ATFP2 [GI: 4097545] Pfam profile PF00403: Heavy-metal-associated domain (68415.m04531) 9 (C) Internal Glu induction I-NC-NC 263403_at At2g04040 MATE efflux family protein contains Pfam profile: PF01554 uncharacterized membrane protein family (68415.m00385) 10 (C) Internal Glu induction I-NC-NC 263275_at At2g14170 methylmalonate-semialdehyde dehydrogenase, putative similar to methylmalonate-semialdehyde dehydrogenase [acylating], mitodiondrial precursor (MMSDH) [Rattus norvegicus] SWISS-PROT: Q02253 (68415.m01578) 11 (C) Internal Glu induction I-NC-NC 263118_at At1g03090 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial/3-methylcrotonyl-CoA carboxylase 1 (MCCA) nearly identical to SP|Q42523 Methylcrotonyl-CoA carboxylase alpha chain, mitochondrial precursor (EC 6.4.1.4) (3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase alpha subunit) {Arabidopsis thaliana} (68414.m00283) 12 (C) Internal Glu induction I-NC-NC 262603_at At1g15380 lactoylglutathione lyase family protein/glyoxalase I family protein contains glyoxalase family protein domain, Pfam: PF00903 (68414.m01841) 13 (C) Internal Glu induction I-NC-NC 262517_at At1g17180 glutathione S-transferase, putative Second of three repeated putative glutathione transferases. 72% identical to glutathione transferase [Arabidopsis thaliana] (gi|4006934). Location of ests 191A10T7 (gb|R90188) and 171N13T7 (gb|R65532) (68414.m02094) 14 (C) Internal Glu induction I-NC-NC 262518_at At1g17170 glutathione S-transferase, putative One of three repeated putative glutathione transferases. 72% identical to glutathione transferase [Arabidopsis thaliana] (gi|4006934) (68414.m02093) 15 (C) Internal Glu induction I-NC-NC 262049_at At1g80180 expressed protein (68414.m09384) 16 (C) Internal Glu induction I-NC-NC 260592_at At1g55850 cellulose synthase family protein similar to cellulose synthase catalytic subunit [gi: 13925881] from Nicotiana alata, cellulose synthase-5 [gi: 9622882] from Zea mays (68414.m06405) 17 (C) Internal Glu induction I-NC-NC 259996_at At1g67910 expressed protein (68414.m07755) 18 (C) Internal Glu induction I-NC-NC 259911_at At1g72680 cinnamyl-alcohol dehydrogenase, putative similar to cinnamyl-alcohol dehydrogenase GB: AAC35846 [Medicago sativa], SP|Q08350 [Picea abies] (68414.m08405) 19 (C) Internal Glu induction I-NC-NC 259478_at At1g18980 germin-like protein, putative similar to germin-like protein subfamily T member 1 [SP|P92995]; contains PS00725 germin family signature (68414.m02361) 20 (C) Internal Glu induction I-NC-NC 258837_at At3g07110 60S ribosomal protein L13A (RPL13aA) similar to ribosomal protein L13A GB: O49885 [Lupinus luteus] (68416.m00847) 21 (C) Internal Glu induction I-NC-NC 258699_at At3g09460 22 (C) Internal Glu induction I-NC-NC 258284_at At3g16080 60S ribosomal protein L37 (RPL37C) similar to ribosomal protein L37 GB: BAA04888 from [Homo sapiens] (68416.m02032) 23 (C) Internal Glu induction I-NC-NC 257658_at At3g13230 expressed protein (68416.m01665) 24 (C) Internal Glu induction I-NC-NC 256965_at At3g13450 2-oxoisovalerate dehydrogenase/3-methyl-2-oxobutanoate dehydrogenase/branched-chain alpha-keto acid dehydrogenase E1 beta subunit (DIN4) identical to branched chain alpha-keto acid dehydrogenase E1 beta subunit [Arabidopsis thaliana] GI: 7021286 (68416.m01692) 25 (C) Internal Glu induction I-NC-NC 256453_at At1g75270 dehydroascorbate reductase, putative similar to GI: 6939839 from [Oryza sativa] (68414.m08744) 26 (C) Internal Glu induction I-NC-NC 256385_at At1g66580 60S ribosomal protein L10 (RPL10C) contains Pfam profile: PF00826: Ribosomal L10 (68414.m07565) 27 (C) Internal Glu induction I-NC-NC 256225_at At1g56220 dormancy/auxin associated family protein similar to Auxin-repressed 12.5 kDa protein (Swiss-Prot: Q05349) [Fragaria ananassa]; similar to auxin-repressed protein (GI: 927034) [Fragaria x ananassa]; similar to dormancy-associated protein (GI: 2605887) [Pisum sativum] (68414.m06461) 28 (C) Internal Glu induction I-NC-NC 256061_at At1g07040 expressed protein (68414.m00750) 29 (C) Internal Glu induction I-NC-NC 254923_at At4g11240 serine/threonine protein phosphatase PP1 isozyme 6 (PP1BG) (TOPP6) identical to SP|P48486 Serine/threonine protein phosphatase PP1 isozyme 6 (EC 3.1.3.16) {Arabidopsis thaliana} (68417.m01820) 30 (C) Internal Glu induction I-NC-NC 254831_at At4g12600 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT: P32495 and PMID: 2063628. (68417.m01986) 31 (C) Internal Glu induction I-NC-NC 254318_at At4g22530 embryo-abundant protein-related similar to embryo-abundant protein [Picea glauca] GI: 1350531 (68417.m03251) 32 (C) Internal Glu induction I-NC-NC 253203_at At4g34710 arginine decarboxylase 2 (SPE2) identical to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19) (ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana} (68417.m04926) 33 (C) Internal Glu induction I-NC-NC 253043_at At4g37540 LOB domain protein 39/lateral organ boundaries domain protein 39 (LBD39) identical to SP|Q9SZE8 LOB domain protein 39 {Arabidopsis thaliana} (68417.m05312) 34 (C) Internal Glu induction I-NC-NC 252991_at At4g38470 protein kinase family protein similar to protein kinase [gi: 170047] from Glycine max; contains Pfam protein kinase domain PF00069 (68417.m05436) 35 (C) Internal Glu induction I-NC-NC 252882_at At4g39675 expressed protein (68417.m05612) 36 (C) Internal Glu induction I-NC-NC 252293_at At3g48990 AMP-dependent synthetase and ligase family protein similar to peroxisomal-coenzyme A synthetase (FAT2) [gi: 586339] from Saccharomyces cerevisiae; contains Pfam AMP-binding enzyme domain PF00501; identical to cDNA; identical to cDNA adenosine monophosphate binding protein 3 AMPBP3 (AMPBP3)GI: 20799714 (68416.m05351) 37 (C) Internal Glu induction I-NC-NC 252034_at At3g52040 expressed protein (68416.m05708) 38 (C) Internal Glu induction I-NC-NC 251486_at At3g59540 60S ribosomal protein L38 (RPL38B) 60S RIBOSOMAL PROTEIN L38 - Lycopersicon esculentum, EMBL X69979 (68416.m06645) 39 (C) Internal Glu induction I-NC-NC 250670_at At5g06860 polygalacturonase inhibiting protein 1 (PGIP1) identical to polygalacturonase inhibiting protein 1 (PGIP1) [Arabidopsis thaliana] gi|7800199|gb|AAF69827; contains leucine rich-repeat (LRR) domains Pfam: PF00560, INTERPRO: IPR001611 (68418.m00776) 40 (C) Internal Glu induction I-NC-NC 250385_at At5g11520 aspartate aminotransferase, chloroplast/transaminase A (ASP3) (YLS4) identical to SP|P46644 Aspartate aminotransferase, chloroplast precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis thaliana}; identical to cDNA YLS4 mRNA for aspartate aminotransferase (ASP3), partial cds GI: 13122285 (68418.m01344) 41 (C) Internal Glu induction I-NC-NC 250032_at At5g18170 glutamate dehydrogenase 1 (GDH1) identical to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis thaliana] SWISS- PROT: Q43314 (68418.m02133) 42 (C) Internal Glu induction I-NC-NC 249941_at At5g22270 expressed protein similar to unknown protein (gb AAF02129.1) (68418.m02595) 43 (C) Internal Glu induction I-NC-NC 249752_at At5g24660 expressed protein (68418.m02914) 44 (C) Internal Glu induction I-NC-NC 249467_at At5g39610 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) protein; similar to cup-shaped cotyledon CUC2 (GI: 1944132) [Arabidopsis thaliana] (68418.m04797) 45 (C) Internal Glu induction I-NC-NC 249125_at At5g43450 2-oxoglutarate-dependent dioxygenase, putative similar to 2A6 (GI: 599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967) (68418.m05312) 46 (C) Internal Glu induction I-NC-NC 249076_at At5g43970 expressed protein (68418.m05380) 47 (C) Internal Glu induction I-NC-NC 248607_at At5g49480 sodium-inducible calcium-binding protein (ACP1)/sodium-responsive calcium-binding protein (ACP1) identical to NaCl-inducible Ca2+-binding protein GI: 2352828 from [Arabidopsis thaliana] (68418.m06123) 48 (C) Internal Glu induction I-NC-NC 248381_at At5g51830 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase (68418.m06426) 49 (C) Internal Glu induction I-NC-NC 247283_at At5g64250 2-nitropropane dioxygenase family/NPD family contains Pfam profile PF03060: oxidoreductase, 2-nitropropane dioxygenase (NPD) family (68418.m08071) 50 (C) Internal Glu induction I-NC-NC 247009_at At5g67600 expressed protein (68418.m08524) 51 (C) Internal Glu induction I-NC-NC 246745_at At5g27770 60S ribosomal protein L22 (RPL22C) ribosomal protein L22 (cytosolic), Rattus norvegicus, PIR: S52084 (68418.m03330) 52 (C) Internal Glu induction I-NC-NC 246463_at At5g16970 NADP-dependent oxidoreductase, putative (P1) identical to probable NADP-dependent oxidoreductase P1, zeta-crystallin homolog [SP|Q39172][gi: 886428], Arabidopsis thaliana similar to allyl alcohol dehydrogenase [Nicotiana tabacum] GI: 6692816; contains Pfam profile PF00107: oxidoreductase, zinc-binding dehydrogenase family (68418.m01988) 53 (C) Internal Glu induction I-NC-NC 245794_at At1g32170 xyloglucan:xyloglucosyl transferase, putative/xyloglucan endotransglycosylase, putative/endo-xyloglucan transferase, putative (XTR4) identical to N-terminal partial sequence of xyloglucan endotransglycosylase-related protein XTR4 GI: 1244754 from [Arabidopsis thaliana]; similar to endoxyloglucan transferase [Arabidopsis thaliana] GI: 5533311 (68414.m03957) 54 (C) Internal Glu induction I-NC-NC 245765_at At1g33600 leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam: PF00560. INTERPRO: IPR001611; contains similarity to gi|9294355|dbj|BAB02252 [Arabidopsis thaliana] (68414.m04159) 55 (C) Internal Glu induction I-NC-NC 245512_at At4g15770 60S ribosome subunit biogenesis protein, putative contains similarity to 60S ribosome subunit biogenesis protein NIP7 (Swiss- Prot: Q08962) [Saccharomyces cerevisiae] (68417.m02401) 56 (C) Internal Glu induction I-NC-NC 245038_at At2g26560 patatin, putative similar to patatin-like latex allergen [Hevea brasiliensis][PMID: 10589016]; contains patatin domain PF01734 (68415.m03186) 57 (C) Internal Glu induction NC-D-D 267209_at At2g30930 expressed protein (68415.m03771) 58 (C) Internal Glu induction NC-D-D 265066_at At1g03870 fasciclin-like arabinogalactan-protein (FLA9) identical to gi_13377784_gb_AAK20861 (68414.m00371) 59 (C) Internal Glu induction NC-D-D 264672_at At1g09750 chloroplast nucleoid DNA-binding protein-related contains Pfam profile PF00026: Eukaryotic aspartyl protease; b similar to CND41, chloroplast nucleoid DNA binding protein (GI: 2541876) [Nicotiana tabacum] (68414.m01094) 60 (C) Internal Glu induction NC-D-D 264371_at At1g12090 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to 14 kDa polypeptide [Catharanthus roseus] GI: 407410; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 (68414.m01399) 61 (C) Internal Glu induction NC-D-D 263598_at At2g01850 xyloglucan:xyloglucosyl transferase/xyloglucan endotransglycosylase/endo-xyloglucan transferase (EXGT-A3) identical to endoxyloglucan transferase [Arabidopsis thaliana] GI: 5533313 (68415.m00118) 62 (C) Internal Glu induction NC-D-D 261975_at At1g64640 plastocyanin-like domain-containing protein contains InterPro: IPR003245 plastocyanin-like domain (68414.m07328) 63 (C) Internal Glu induction NC-D-D 261825_at At1g11545 xyloglucan:xyloglucosyl transferase, putative/xyloglucan endotransglycosylase, putative/endo-xyloglucan transferase, putative similar to endo-xyloglucan transferase GI: 2244732 from [Gossypium hirsutum] (68414.m01326) 64 (C) Internal Glu induction NC-D-D 260221_at At1g74670 gibberellin-responsive protein, putative similar to SP|P48890 Gibberellin-regulated protein 4 precursor {Arabidopsis thaliana} GASA4; contains Pfam profile PF02704: Gibberellin regulated protein (68414.m08647) 65 (C) Internal Glu induction NC-D-D 259980_at At1g76520 auxin efflux carrier family protein contains auxin efflux carrier domain. Pfam: PF03547 (68414.m08904) 66 (C) Internal Glu induction NC-D-D 259803_at At1g72150 SEC14 cytosolic factor family protein/phosphoglyceride transfer family protein similar to SEC14-like protein 2 (Alpha-tocopherol associated protein) (TAP) (bTAP) (Fragment) (SP: P58875) {Bos taurus}; similar to GI: 807956 from [Saccharomyces cerevisiae]; contains Pfam PF00650: CRAL/TRIO domain; contains Pfam PF03765: CRAL/TRIO, N-terminus (68414.m08342) 67 (C) Internal Glu induction NC-D-D 259588_at At1g27930 expressed protein contains Pfam profile PF04669: Protein of unknown function (DUF579) (68414.m03422) 68 (C) Internal Glu induction NC-D-D 258410_at At3g16780 60S ribosomal protein L19 (RPL19B) similar to ribosomal protein L19 GB: CAA45090 from [Homo sapiens] (68416.m02142) 69 (C) Internal Glu induction NC-D-D 258369_at At3g14310 pectinesterase family protein contains Pfam profiles: PF01095 pectinesterase, PF04043 plant invertase/pectin methylesterase inhibitor; similar to pectin methylesterase GB: Q42534 from [Arabidopsis thaliana] (68416.m01810) 70 (C) Internal Glu induction NC-D-D 257798_at At3g15950 DNA topoisomerase-related similar to DNA topoisomerase IV subunit A (GI: 26454107) [Mycoplasma penetrans] (68416.m02017) 71 (C) Internal Glu induction NC-D-D 257203_at At3g23730 xyloglucan:xyloglucosyl transferase, putative/xyloglucan endotransglycosylase, putative/endo-xyloglucan transferase, putative similar to xyloglucan endotransglycosylase-related protein GI: 1244780 from [Arabidopsis thaliana] (68416.m02984) 72 (C) Internal Glu induction NC-D-D 257037_at At3g19130 RNA-binding protein, putative similar to RNA Binding Protein 47 [Nicotiana plumbaginifolia] GI: 9663769, DNA binding protein ACBF GB: AAC49850 from [Nicotiana tabacum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68416.m02429) 73 (C) Internal Glu induction NC-D-D 256543_at At1g42480 expressed protein (68414.m04898) 74 (C) Internal Glu induction NC-D-D 255856_at At1g66940 protein kinase-related (68414.m07608) 75 (C) Internal Glu induction NC-D-D 254789_at At4g12880 plastocyanin-like domain-containing protein (68417.m02016) 76 (C) Internal Glu induction NC-D-D 254726_at At4g13660 pinoresinol-lariciresinol reductase, putative similar to pinoresinol-lariciresinol reductase TH1 [Tsuga heterophylla][GI: 7578915]; contains isoflavone reductase domain PF02718 (68417.m02124) 77 (C) Internal Glu induction NC-D-D 252407_at At3g47520 malate dehydrogenase [NAD], chloroplast (MDH) identical to chloroplast NAD-malate dehydrogenase [Arabidopsis thaliana] GI: 3256066; contains InterPro entry IPR001236: Lactate/malate dehydrogenase; contains Pfam profiles PF00056: lactate/malate dehydrogenase, NAD binding domain and PF02866: lactate/malate dehydrogenase, alpha/beta C-terminal domain (68416.m05168) 78 (C) Internal Glu induction NC-D-D 252220_at At3g49940 LOB domain protein 38/lateral organ boundaries domain protein 38 (LBD38) identical to SP|Q9SN23 LOB domain protein 38 {Arabidopsis thaliana} (68416.m05461) 79 (C) Internal Glu induction NC-D-D 252199_at At3g50270 transferase family protein similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase, Dianthus caryophyllus [gi: 2239091]; contains Pfam transferase family domain PF002458 (68416.m05497) 80 (C) Internal Glu induction NC-D-D 251830_at At3g55010 phosphoribosylformylglycinamidine cyclo-ligase. chloroplast/phosphoribosyl-aminoimidazole synthetase/AIR synthase (PUR5) identical to phosphoribosylformylglycinamidine cyclo-ligase, chloroplast precursor SP: Q05728 from [Arabidopsis thaliana]; contains Pfam profiles: PF02769 AIR synthase related protein, C-terminal domain, PF00586 AIR synthase related protein, N-terminal domain (68416.m06108) 81 (C) Internal Glu induction NC-D-D 251015_at At5g02480 expressed protein p (68418.m00181) 82 (C) Internal Glu induction NC-D-D 250777_at At5g05440 expressed protein low similarity to cytokinin-specific binding protein [Vigna radiata] GI: 4190976 (68418.m00586) 83 (C) Internal Glu induction NC-D-D 250366_at At5g11420 expressed protein contains Pfam profile PF04862: Protein of unknown function, DUF642 (68418.m01333) 84 (C) Internal Glu induction NC-D-D 248564_at At5g49700 DNA-binding protein-related contains Pfam domain PF03479: Domain of unknown function (DUF296), found in AT-hook motifs Pfam: PF02178 (68418.m06153) 85 (C) Internal Glu induction NC-D-D 247555_at At5g61020 YT521-B-like family protein contains Pfam profile PF04146: YT521-B-like family (68418.m07655) 86 (C) Internal Glu induction NC-D-D 247266_at At5g64570 glycosyl hydrolase family 3 protein (68418.m08115) 87 (C) Internal Glu induction NC-D-D 246919_at At5g25460 expressed protein contains Pfam profile PF04862: Protein of unknown function, DUF642 (68418.m03026) 88 (C) Internal Glu induction NC-D-D 246550_at At5g14920 gibberellin-regulated family protein similar to SP|P46689 Gibberellin-regulated protein 1 precursor (Arabidopsis thaliana); contains Pfam profile PF02704: Gibberellin regulated protein (68418.m01750) 89 (C) Internal Glu induction NC-D-D 245164_at At2g33210 chaperonin, putative similar to SWISS-PROT: Q05046-chaperonin CPN60-2, mitochondrial precursor (HSP60-2) [Cucurbita maxima]; contains Pfam: PF00118 domain, TCP-1/cpn60 chaperonin family (68415.m04069) 90 (C) Internal Glu Repression D-I-I 264213_at At1g65400 91 (C) Internal Glu Repression D-I-I 245329_at At4g14365 zinc finger (C3HC4-type RING finger) family protein/ankyrin repeat family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) and Pfam profile: PF00023 ankyrin repeat (68417.m02213) 92 (C) Internal Glu Repression D-NC-NC 267470_at At2g30490 trans-cinnamate 4-monooxygenase/cinnamic acid 4-hydroxylase (C4H) (CA4H)/cytochrome P450 73 (CYP73) (CYP73A5) identical to SP|P92994| Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73). {Arabidopsis thaliana}; molecular marker C4H (GB: U71080) (68415.m03714) 93 (C) Internal Glu Repression D-NC-NC 267367_at At2g44210 expressed protein Pfam profile PF03080: Arabidopsis proteins of unknown function (68415.m05502) 94 (C) Internal Glu Repression D-NC-NC 267187_s_at At2g44160 methylenetetrahydrofolate reductase 2 (MTHFR2) identical to SP|O80585 Methylenetetrahydrofolate reductase (EC 1.5.1.20) {Arabidopsis thaliana} (68415.m05493) 95 (C) Internal Glu Repression D-NC-NC 267154_at At2g30870 glutathione S-transferase, putative supported by cDNA GI: 443698 GB: D17673 (68415.m03762) 96 (C) Internal Glu Repression D-NC-NC 267136_at At2g23460 extra-large guanine nucleotide binding protein/G-protein (XLG) identical to extra-large G-protein (XLG) [Arabidopsis thaliana] GI: 3201680 (68415.m02801) 97 (C) Internal Glu Repression D-NC-NC 266993_at At2g39210 nodulin family protein similar to nodulin-like protein [Arabidopsis thaliana] GI: 3329368, nodule-specific protein Nlj70 [Lotus japonicus] GI: 3329366 (68415.m04816) 98 (C) Internal Glu Repression D-NC-NC 266967_at At2g39530 integral membrane protein, putative contains 3 transmembrane domains; contains Pfam PF04535: Domain of unknown function (DUF588): similar to putative ethylene responsive element binding protein (GI: 22135858) [Arabidopsis thaliana] (68415.m04850) 99 (C) Internal Glu Repression D-NC-NC 266857_at At2g26900 bile acid:sodium symporter family protein low similarity to SP|Q12908 lleal sodium/bile acid cotransporter {Homo sapiens}; contains Pfam profile PF01758: Sodium Bile acid symporter family (68415.m03227) 100 (C) Internal Glu Repression D-NC-NC 266808_at At2g29995 expressed protein (68415.m03649) 101 (C) Internal Glu Repression D-NC-NC 266719_at At2g46830 myb-related transcription factor (CCA1) identical to myb-related transcription factor (CCA1) GI: 4090569 from [Arabidopsis thaliana] (68415.m05843) 102 (C) Internal Glu Repression D-NC-NC 266591_at At2g46225 expressed protein (68415.m05748) 103 (C) Internal Glu Repression D-NC-NC 266516_at At2g47880 glutaredoxin family protein contains INTERPRO Domain IPR002109, Glutaredoxin (thioltransferese) (68415.m05979) 104 (C) Internal Glu Repression D-NC-NC 266414_at At2g38700 mevalonate diphosphate decarboxylase (MVD1) identical to mevalonate diphosphate decarboxylase [Arabidopsis thaliana] gi|2288887|emb|CAA74700 (68415.m04753) 105 (C) Internal Glu Repression D-NC-NC 266295_at At2g29550 tubulin beta-7 chain (TUB7) identical to GB: M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis thaliana} (68415.m03589) 106 (C) Internal Glu Repression D-NC-NC 266205_s_at At2g27860 expressed protein (68415.m03377) 107 (C) Internal Glu Repression D-NC-NC 266089_at At2g38010 ceramidase family protein contains Pfam domain, PF04734: Neutral/alkaline nonlysosomal ceramidase (68415.m04665) 108 (C) Internal Glu Repression D-NC-NC 265286_at At2g20360 expressed protein (68415.m02377) 109 (C) Internal Glu Repression D-NC-NC 265208_at At2g36690 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to IDS3 [Hordeum vulgare][GI: 4514655], leucoanthocyanidin dioxygenase [SP|P51091][Malus domestica]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain (68415.m04501) 110 (C) Internal Glu Repression D-NC-NC 264914_at At1g60780 clathrin adaptor complexes medium subunit family protein contains Pfam profile: PF00928 adaptor complexes medium subunit family (68414.m06842) 111 (C) Internal Glu Repression D-NC-NC 264833_at At1g03590 protein phosphatase 2C family protein/PP2C family protein similar to protein phosphatase-2C; PP2C (GI: 3643088) [Mesembryanthemum crystallinum]; contains Pfam PF00481: Protein phosphatase 2C domain; (68414.m00339) 112 (C) Internal Glu Repression D-NC-NC 264434_at At1g10340 ankyrin repeat family protein contains ankyrin repeat domains, Pfam: PF00023 (68414.m01164) 113 (C) Internal Glu Repression D-NC-NC 264386_at At1g12000 pyrophosphate-fructose-6-phosphate 1-phosphotransferase beta subunit, putative/pyrophosphate-dependent 6-phosphofructose- 1-kinase, putative strong similarity to SP|Q41141 Pyrophosphate-fructose 6-phosphate 1-phosphotransferase beta subunit (EC 2.7.1.90) (PFP) ((PPI-PFK) {Ricinus communis}; contains Pfam profile PF00365: Phosphofructokinase (68414.m01386) 114 (C) Internal Glu Repression D-NC-NC 264372_at At1g11840 lactoylglutathione lyase, putative/glyoxalase I, putative highly similar to putative lactoylglutathione lyase SP: Q39366 from [Brassica oleracea] (68414.m01360) 115 (C) Internal Glu Repression D-NC-NC 264316_at At1g70330 equilibrative nucleoside transporter family protein contains similarity to SWISS-PROT: Q14542 equilibrative nucleoside transporter 2 (Equilibrative nitrobenzylmercaptopurine riboside-insensitive nucleoside transporter, Equilibrative NBMPR-insensitive nucleoside transporter, Nucleoside transporter, ei-type, 38 kDa nucleolar protein HNP36, Hydrophobic nucleolar protein, 36 kDa, Delayed-early response protein 12) [Homo sapiens] (68414.m08091) 116 (C) Internal Glu Repression D-NC-NC 264057_at At2g28550 AP2 domain-containing transcription factor RAP2.7 (RAP2.7) nearly identical to AP2 domain transcription factor RAP2.7 (GI: 2281639) [Arabidopsis thaliana] (68415.m03468) 117 (C) Internal Glu Repression D-NC-NC 264005_at At2g22470 arabinogalactan-protein (AGP2) identical to gi|3883122|gb|AAC77824; supported by cDNA gi|3883121|gb|AF082299 (68415.m02664) 118 (C) Internal Glu Repression D-NC-NC 264006_at At2g22430 homeobox-leucine zipper protein 6 (HB-6)/HD-ZIP transcription factor 6 identical to homeobox-leucine zipper protein ATHB-6 (HD- ZIP protein ATHB-6) (SP: P46668) [Arabidopsis thaliana] (68415.m02660) 119 (C) Internal Glu Repression D-NC-NC 263935_at At2g35930 U-box domain-containing protein similar to immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum] GI: 14582200; contains Pfam profile PF04564: U-box domain (68415.m04410) 120 (C) Internal Glu Repression D-NC-NC 263900_at At2g36290 hydrolase, alpha/beta fold family protein low similarity to 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase [Rhodococcus sp. RHA1] GI: 8978311; contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68415.m04453) 121 (C) Internal Glu Repression D-NC-NC 263804_at At2g40270 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain (68415.m04954) 122 (C) Internal Glu Repression D-NC-NC 263715_at At2g20570 golden2-like transcription factor (GLK1) identical to golden2-like transcription factor GI: 13311003 from [Arabidopsis thaliana]; contains Pfam profile: PF00249 Myb-like DNA-binding domain (68415.m02402) 123 (C) Internal Glu Repression D-NC-NC 263626_at At2g04880 WRKY family transcription factor (ZAP1) identical to ZAP1 GI: 1064883 from [Arabidopsis thaliana]; contains Pfam profile: PF03106 WRKY DNA-binding domain (68415.m06038) 124 (C) Internal Glu Repression D-NC-NC 263553_at At2g16430 purple acid phosphatase (PAP10) identical to purple acid phosphatase (PAP10) GI: 20257482 from [Arabidopsis thaliana] (68415.m01881) 125 (C) Internal Glu Repression D-NC-NC 263536_at At2g25000 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA-binding domain (68415.m02989) 126 (C) Internal Glu Repression D-NC-NC 263433_at At2g22240 inositol-3-phosphate synthase isozyme 2/myo-inositol-1-phosphate synthase 2/MI-1-P synthase 2/IPS 2 identical to SP|Q38862 Myo-inositol-1-phosphate synthase isozyme 2 (EC 5.5.1.4) (MI-1-P synthase 2) (IPS 2) {Arabidopsis thaliana} (68415.m02639) 127 (C) Internal Glu Repression D-NC-NC 262980_at At1g75680 glycosyl hydrolase family 9 protein similar to endo-beta-1,4-glucanase GB: AAC12685 GI: 3025470 from [Pinus radiata] (68414.m08792) 128 (C) Internal Glu Repression D-NC-NC 262919_at At1g79380 copine-related low similarity to SP|Q99829 Copine I {Homo sapiens} (68414.m09251) 129 (C) Internal Glu Repression D-NC-NC 262637_at At1g06640 2-oxoglutarate-dependent dioxygenase, putative similar to 2AB (GI: 599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967); contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family (68414.m00701) 130 (C) Internal Glu Repression D-NC-NC 262588_at At1g15130 hydroxyproline-rich glycoprotein family protein (68414.m01807) 131 (C) Internal Glu Repression D-NC-NC 262376_at At1g72970 glucose-methanol-choline (GMC) oxidoreductase family protein similar to mandelonitrile lyase from Prunus serotina [SP|P52706, SP|P52707]; contains Pfam profile PF00732 GMC oxidoreductase (68414.m08439) 132 (C) Internal Glu Repression D-NC-NC 262313_at At1g70900 expressed protein (68414.m08181) 133 (C) Internal Glu Repression D-NC-NC 262197_at At1g53910 AP2 domain-containing protein RAP2.12 (RAP2.12) identical to AP2 domain containing protein GI: 2281649 from [Arabidopsis thaliana] (68414.m06137) 134 (C) Internal Glu Repression D-NC-NC 262177_at At1g74710 isochorismate synthase 1 (ICS1)/isochorismate mutase identical to GI: 17223087 and GB: AF078080; contains Pfam profile PF00425: chorismate binding enzyme; contains TIGRfam profile TIGR00543: isochorismate synthases; identical to cDNA isochorismate synthase 1 precursor (ICS1) nuclear gene for plastid product GI: 17223086 (68414.m08654) 135 (C) Internal Glu Repression D-NC-NC 262051_at At1g79990 coatomer protein complex, subunit beta 2 (beta prime), putative contains 7 WD-40 repeats (PF00400) (1 weak); similar to Coatomer beta′ subunit (Beta′-coat protein) (Beta′-COP) (p102) (SP: P35606) [Homo sapiens]; similar to Coatomer beta′ subunit (Beta′-coat protein) (Beta′-COP) (p102) (SP: O55029) [Mus musculus] (68414.m09356) 136 (C) Internal Glu Repression D-NC-NC 262052_at At1g80020 137 (C) Internal Glu Repression D-NC-NC 261970_at At1g65960 glutamate decarboxylase 2 (GAD 2) similar to glutamate decarboxylase (gad) GI: 294111 from [Petunia hybrida] (68414.m07484) 138 (C) Internal Glu Repression D-NC-NC 261935_at At1g22610 C2 domain-containing protein contains INTERPRO: IPR000008 C2 domain (68414.m02823) 139 (C) Internal Glu Repression D-NC-NC 261792_at At1g15950 cinnamoyl-CoA reductase, putative nearly identical to CCR1 (GI: 12034897), similar to cinnamoyl CoA reductase GI: 2058310 from [Eucalyptus gunnii] (68414.m01914) 140 (C) Internal Glu Repression D-NC-NC 261469_at At1g28340 leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam: PF00560, INTERPRO: IPRO01611; contains some similarity to receptor-like protein kinases (68414.m03481) 141 (C) Internal Glu Repression D-NC-NC 261412_at At1g07890 L-ascorbate peroxidase 1, cytosolic (APX1) identical to SP|Q05431 L-ascorbate peroxidase, cytosolic (EC 1.11.1.11) (AP) {Arabidopsis thaliana}, L-ascorbate peroxidase [Arabidopsis thaliana] gi|16173|emb|CAA42168; strong similarity to cytosolic ascorbate peroxidase [Spinacia oleracea] gi|1384110|dbj|BAA12890 (68414.m00856) 142 (C) Internal Glu Repression D-NC-NC 261286_at At1g35780 expressed protein (68414.m04448) 143 (C) Internal Glu Repression D-NC-NC 260985_at At1g53500 NAD-dependent epimerase/dehydratase family protein low similarity to dTDP-D-glucose-4,6-dehydratase from Aneurinibacillus thermoaerophilus GI: 16357481, Sphingomonas sp. GI: 1314581; contains Pfam profile PF01370: NAD dependent epimerase/dehydratase family; putative NDP-rhamnose synthase (rhm2 gene) GI: 31559258 (68414.m06066) 144 (C) Internal Glu Repression D-NC-NC 260880_at At1g21380 VHS domain-containing protein/GAT domain-containing protein weak similarity to Hrs [Rattus norvegicus] GI: 8547026; contains Pfam profiles PF00790: VHS domain, PF03127: GAT domain (68414.m02875) 145 (C) Internal Glu Repression D-NC-NC 260839_at At1g43690 ubiquitin interaction motif-containing protein contains Pfam profile PF02809: Ubiquitin interaction motif (68414.m05019) 146 (C) Internal Glu Repression D-NC-NC 260800_at At1g78240 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI: 15320410; contains Pfam profile PF03141: Putative methyltransferase (68414.m09118) 147 (C) Internal Glu Repression D-NC-NC 260693_at At1g32450 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family (68414.m04005) 148 (C) Internal Glu Repression D-NC-NC 260618_at At1g53230 TCP family transcription factor 3 (TCP3) identical to transcription factor 3 (TCP3) [Arabidopsis thaliana] (GI: 3243274); similar to flower development protein cycloidea (cyc3) GI: 6358611 from [Misopates orontium] (68414.m06032) 149 (C) Internal Glu Repression D-NC-NC 260590_at At1g53310 phosphoenolpyruvate carboxylase, putative/PEP carboxylase, putative (PPC1) strong similarity to SP|P29196 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCASE) {Solanum tuberosum}; contains Pfam profile PF00311: phosphoenolpyruvate carboxylase (68414.m06042) 150 (C) Internal Glu Repression D-NC-NC 260601_at At1g55910 metal transporter, putative (ZIP11) similar to putative zinc transporter ZIP2 [Arabidopsis thaliana] gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID: 11500563 (68414.m06412) 151 (C) Internal Glu Repression D-NC-NC 260401_at At1g69840 band 7 family protein strong similarity to hypersensitive-induced response protein [Zea mays] GI: 7716466; contains Pfam profile PF01145: SPFH domain/Band 7 family (68414.m08035) 152 (C) Internal Glu Repression D-NC-NC 260234_at At1g74460 GDSL-motif lipase/hydrolase family protein similar to family II lipases EXL3 GI: 15054386, EXL1 GI: 15054382, EXL2 GI: 15054384 from [Arabidopsis thaliana]; contains Pfam profile: PF00657 lipase/acylhydrolase with GDSL-like motif (68414.m08826) 153 (C) Internal Glu Repression D-NC-NC 260048_at At1g73800 calmodulin-binding protein similar to calmodulin-binding protein TCB60 GI: 1698548 from [Nicotiana tabacum] (68414.m08544) 154 (C) Internal Glu Repression D-NC-NC 259882_at At1g76670 transporter-related low similarity to glucose-6-phosphate/phosphate-translocator precursor [Solanum tuberosum] GI: 2997593. GDP- Mannose transporter [Arabidopsis thaliana] GI: 15487237; contains Pfam profile PF00892: Integral membrane protein (68414.m08921) 155 (C) Internal Glu Repression D-NC-NC 259561_at At1g21250 wall-associated kinase 1 (WAK1) identical to wall-associated kinase 1 [Arabidopsis thaliana] GI: 3549626; expressed in leaves and stems & induced by pathogen infection (PMID: 10380805) (68414.m02656) 156 (C) Internal Glu Repression D-NC-NC 259507_at At1g43910 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 (68414.m05086) 157 (C) Internal Glu Repression D-NC-NC 259383_at At3g16470 jacalin lectin family protein contains Pfam profile: PF01419 jacalin-like lectin domain; similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI: 2997767 (68416.m02101) 158 (C) Internal Glu Repression D-NC-NC 259175_at At3g01560 proline-rich family protein contains proline rich extensin domains, INTERPRO: IPR002965 (68416.m00086) 159 (C) Internal Glu Repression D-NC-NC 259070_at At3g11670 digalactosyldiacylglycerol synthase 1 (DGD1)/MGDG: MGDG galactosyltransferase/galactolipid galactosyltransferase identical to digalactosyldiacylglycerol synthase (DGD1) GI: 5354158 [Arabidopsis thaliana] (68416.m01430) 160 (C) Internal Glu Repression D-NC-NC 258925_at At3g10420 sporulation protein-related similar to hypothetical proteins: GB: P51281 [Chloroplast Porphyra purpurea], GB: BAA16982 [Synechocystis sp], GB: P49540 [Odontella sinensis], GB: AAB82669 [Chloroplast Cyanidium caldarium]; similar to stage III sporulation protein AA (GI: 18145497) [Clostridium perfringens str. 13]; similar to stage III sporulation protein AA (mutants block sporulation after engulfment) (GI: 22777578) [Oceanobacillus iheyensis] (68416.m01249) 161 (C) Internal Glu Repression D-NC-NC 258649_at At3g09840 cell division cycle protein 48 (CDC48A) (CDC48) identical to SP|P54809 Cell division cycle protein 48 homolog {Arabidopsis thaliana} (68416.m01174) 162 (C) Internal Glu Repression D-NC-NC 258621_at At3g02830 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) (68416.m00275) 163 (C) Internal Glu Repression D-NC-NC 258286_at At3g16060 kinesin motor family protein similar to kinesin heavy chain member 2 GB: NP_032468 from [Mus musculus]; contains Pfam profile PF00225: Kinesin motor domain (68416.m02030) 164 (C) Internal Glu Repression D-NC-NC 258160_at At3g17820 glutamine synthetase (GS1) identical to glutamine synthetase, cytosolic isozyme (glutamate-ammonia ligase, GS1) [Arabidopsis thaliana] SWISS-PROT: Q9LVI8 (68416.m02272) 165 (C) Internal Glu Repression D-NC-NC 258037_at At3g21230 4-coumarate-CoA ligase, putative/4-coumaroyl-CoA synthase, putative (4CL) similar to 4CL2 [gi: 122291365] and 4CL1 [gi: 12229649] from [Arabidopsis thaliana], 4CL1 [gi: 12229631] from Nicotiana tabacum (68416.m02683) 166 (C) Internal Glu Repression D-NC-NC 258047_at At3g21240 4-coumarate-CoA ligase 2/4-coumaroyl-CoA synthase 2 (4CL2) identical to SP|Q9S725 4-coumarate-CoA ligase 2 (EC 6.2.1.12) (4CL 2) (4-coumaroyl-CoA synthase 2) {Arabidopsis thaliana} (68416.m02684) 167 (C) Internal Glu Repression D-NC-NC 258007_at At3g19420 expressed protein (68416.m02463) 168 (C) Internal Glu Repression D-NC-NC 257952_at At3g21770 peroxidase 30 (PER30) (P30) (PRXR9) identical to SP|Q9LSY7 Peroxidase 30 precursor (EC 1.11.1.7) (Atperox P30) (PRXR9) (ATP7a) {Arabidopsis thaliana} (68416.m02746) 169 (C) Internal Glu Repression D-NC-NC 257849_at At3g13060 expressed protein contains Pfam profile PF04146: YT521-B-like family (68416.m01627) 170 (C) Internal Glu Repression D-NC-NC 257104_at At3g25040 ER lumen protein retaining receptor, putative/HDEL receptor, putative similar to SP|P35402 ER lumen protein retaining receptor (HDEL receptor) {Arabidopsis thaliana}; contains Pfam profile PF00810: ER lumen protein retaining receptor (68416.m03129) 171 (C) Internal Glu Repression D-NC-NC 257076_at At3g19680 expressed protein (68416.m02493) 172 (C) Internal Glu Repression D-NC-NC 256865_at At3g23820 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI: 3093975 [PID: g3093975], WbnF [Escherichia coli] GI: 5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family (68416.m02994) 173 (C) Internal Glu Repression D-NC-NC 256328_at At3g02360 6-phosphogluconate dehydrogenase family protein contains Pfam profiles: PF00393 6-phosphogluconate dehydrogenase C- terminal domain, PF03446 NAD binding domain of 6-phosphogluconate; similar to 6-phosphogluconate dehydrogenase GB: BAA22812 GI: 2529229 [Glycine max] (68416.m00219) 174 (C) Internal Glu Repression D-NC-NC 256322_at At1g54890 expressed protein (68414.m06251) 175 (C) Internal Glu Repression D-NC-NC 256186_at At1g51680 4-coumarate-CoA ligase 1/4-coumaroyl-CoA synthase 1 (4CL1) identical to SP|Q42524 4-coumarate-CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) {Arabidopsis thaliana} (68414.m05822) 176 (C) Internal Glu Repression D-NC-NC 255953_at At1g22070 bZIP family transcription factor (TGA3) identical to transcription factor GI: 304113 from [Arabidopsis thaliana] (68414.m02780) 177 (C) Internal Glu Repression D-NC-NC 255889_at At1g17840 ABC transporter family protein similar to ABC transporter GI: 10280532 from [Homo sapiens] (68414.m02208) 178 (C) Internal Glu Repression D-NC-NC 255690_at At4g00360 cytochrome P450, putative (68417.m00050) 179 (C) Internal Glu Repression D-NC-NC 255691_at At4g00370 sugar transporter family protein contains Pfam profile PF00083: major facilitator superfamily protein (68417.m00051) 180 (C) Internal Glu Repression D-NC-NC 255671_at At4g00355 expressed protein (68417.m00047) 181 (C) Internal Glu Repression D-NC-NC 255364_s_at At4g04020 plastid-lipid associated protein PAP, putative/fibrillin, putative strong similarity to plastid-lipid associated proteins PAP1 GI: 14248554, PAP2 GI: 14248556 from [Brassica rapa], fibrillin [Brassica napus] GI: 4139097; contains Pfam profile PF04755: PAP_fibrillin (68417.m00572) 182 (C) Internal Glu Repression D-NC-NC 255332_at At4g04340 early-responsive to dehydration protein-related/ERD protein-related similar to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI: 15375406; contains Pfam profile PF02714: Domain of unknown function DUF221 (68417.m00619) 183 (C) Internal Glu Repression D-NC-NC 254874_at At4g11570 haloacid dehalogenase-like hydrolase family protein similar to genetic modifier [Zea mays] GI: 10444400; contains InterPro accession IPR005834: Haloactd dehalogenase-like hydrolase (68417.m01854) 184 (C) Internal Glu Repression D-NC-NC 254833_s_at At4g12280 copper amine oxidase family protein contains Pfam domain, PF01179: Copper amine oxidase, enzyme domain (68417.m01946) 185 (C) Internal Glu Repression D-NC-NC 254577_at At4g19450 nodulin-related weak similarity to nodule-specific protein Nlj70 [Lotus japonicus] GI: 3329366 (68417.m02861) 186 (C) Internal Glu Repression D-NC-NC 254543_at At4g19810 glycosyl hydrolase family 18 protein similar to chitinase/lysozyme GI: 487689 from [Nicotiana tabacum] (68417.m02905) 187 (C) Internal Glu Repression D-NC-NC 254387_at At4g21850 methionine sulfoxide reductase domain-containing protein/SelR domain-containing protein low similarity to pilin-like transcription factor [Homo sapiens] GI: 5059062, SP|P14930 Peptide methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6) {Neisseria gonorrhoeae}; contains Pfam profile PF01641: SelR domain (68417.m03159) 188 (C) Internal Glu Repression D-NC-NC 254242_at At4g23200 protein kinase family protein contains Pfam PF00069: Protein kinase domain (68417.m03346) 189 (C) Internal Glu Repression D-NC-NC 254243_at At4g23210 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain (68417.m03347) 190 (C) Internal Glu Repression D-NC-NC 254227_at At4g23630 reticulon family protein (RTNLB1) weak similarity to Nogo-C protein [Rattus norvegicus] GI: 6822251; contains Pfam profile PF02453: Reticulon (68417.m03403) 191 (C) Internal Glu Repression D-NC-NC 254159_at At4g24240 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA-binding domain (68417.m03479) 192 (C) Internal Glu Repression D-NC-NC 254141_at At4g24620 glucose-6-phosphate isomerase, putative similar to glucose-6-phosphate isomerase [Spinacia oleracea] GI: 3413511; contains Pfam profile PF00342: glucose-6-phosphate isomerase (68417.m03526) 193 (C) Internal Glu Repression D-NC-NC 254053_s_at At4g25300 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to flavonol synthase [Petunia x hybrida][GI: 311658], anthocyanidin synthase [Torenia fournieri][GI: 12583673]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain (68417.m03638) 194 (C) Internal Glu Repression D-NC-NC 254021_at At4g25650 Rieske [2Fe—2S] domain-containing protein similar to cell death suppressor protein lls1 from Zea mays [gi: 1935909], Rieske iron- sulfur protein Tic55 from Pisum sativum [gi: 2764524]; contains Pfam PF00355 Rieske [2Fe—2S] domain (68417.m03693) 195 (C) Internal Glu Repression D-NC-NC 253856_at At4g28100 expressed protein (68417.m04031) 196 (C) Internal Glu Repression D-NC-NC 253815_at At4g28250 beta-expansin, putative (EXPB3) similar to soybean pollen allergen (cim1) protein-soybean, PIR2: S48032; beta-expansin gene family, PMID: 11641069 (68417.m04047) 197 (C) Internal Glu Repression D-NC-NC 253702_at At4g29900 calcium-transporting ATPase, plasma membrane-type, putative/Ca2+-ATPase, putative (ACA10) identical to SP|Q9SZR1 Potential calcium-transporting ATPase 10, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 10) {Arabidopsis thaliana}; similar to SP|Q9LF79 Calcium-transporting ATPase 8, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 8) {Arabidopsis thaliana} (68417.m04254) 198 (C) Internal Glu Repression D-NC-NC 253628_at At4g30280 xyloglucan:xyloglucosyl transferase, putative/xyloglucan endotransglycosylase, putative/endo-xyloglucan transferase, putative similar to xyloglucan endotransglycosylase TCH4 GI: 886116 from [Arabidopsis thaliana] (68417.m04304) 199 (C) Internal Glu Repression D-NC-NC 253631_at At4g30440 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulniticus GI: 3093975 [PID: g3093975], WbnF [Escherichia coli] GI: 5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family (68417.m04323) 200 (C) Internal Glu Repression D-NC-NC 253600_at At4g30810 serine carboxypeptidase S10 family protein similar to serine-type carboxypeptidase (SP: P55748) [Hordeum vulgare] (68417.m04365) 201 (C) Internal Glu Repression D-NC-NC 253551_at At4g30996 expressed protein (68417.m04401) 202 (C) Internal Glu Repression D-NC-NC 253485_at At4g31800 WRKY family transcription factor (68417.m04517) 203 (C) Internal Glu Repression D-NC-NC 253377_at At4g33300 disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. (68417.m04737) 204 (C) Internal Glu Repression D-NC-NC 253357_at At4g33400 dem protein-related/defective embryo and meristems protein-related identical to dem GI: 2190419 from [Lycopersicon esculentum] (68417.m04747) 205 (C) Internal Glu Repression D-NC-NC 253351_at At4g33700 CBS domain-containing protein contains Pfam profiles PF00571: CBS domain, PF01595: Domain of unknown function (68417.m04786) 206 (C) Internal Glu Repression D-NC-NC 253300_at At4g33580 carbonic anhydrase family protein/carbonate dehydratase family protein similar to SP|P46512 Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonate dehydratase 1) {Flaveria linearis}; contains Pfam profile PF00484: Carbonic anhydrase (68417.m04771) 207 (C) Internal Glu Repression D-NC-NC 253308_at At4g33680 aminotransferase class I and II family protein low similarity to Aromatic Aminotransferase from Pyrococcus horikoshii GP|14278621; contains Pfam profile PF00155 aminotransferase, classes I and II (68417.m04784) 208 (C) Internal Glu Repression D-NC-NC 253276_at At4g34050 caffeoyl-CoA 3-O-methyltransferase, putative nearly identical to GI: 2960356 [Populus balsamifera subsp. trichocarpa], GI: 684942 [Medicago sativa subsp. sativa] isoform contains a GT-TG intron which removes an internal segment of the protein. (68417.m04831) 209 (C) Internal Glu Repression D-NC-NC 253231_at At4g34450 coatomer gamma-2 subunit, putative/gamma-2 coat protein, putative/gamma-2 COP, putative similar to SP|Q9UBF2 Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP) {Homo sapiens}; contains Pfam profile: PF01602 Adaptin N terminal region (68417.m04896) 210 (C) Internal Glu Repression D-NC-NC 253083_at At4g36250 aldehyde dehydrogenase family protein contais aldehyde dehydrogenase (NADP) family protein domain, Pfam: PF00171 (68417.m05156) 211 (C) Internal Glu Repression D-NC-NC 253024_at At4g38080 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO: IPR002965; Common family member; At2g22510 [Arabidopsis thaliana] (68417.m05378) 212 (C) Internal Glu Repression D-NC-NC 252921_at At4g39030 enhanced disease susceptibility 5 (EDS5)/salicylic acid induction deficient 1 (SID1) identical to SP|Q945F0; contains Pfam profile PF01554: Uncharacterized membrane protein family (68417.m05528) 213 (C) Internal Glu Repression D-NC-NC 252932_at At4g39080 vacuolar proton ATPase, putative similar to Swiss-Prot: Q93050 vacuolar proton translocating ATPase 116 kDa subunit A isoform 1 (Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit, Vacuolar proton pump subunit 1, Vacuolar adenosine triphosphatase subunit Ac116) [Homo sapiens] (68417.m05534) 214 (C) Internal Glu Repression D-NC-NC 252943_at At4g39330 mannitol dehydrogenase, putative nearly identical to SP|P42734, probable mannitol dehydrogenase (68417.m05568) 215 (C) Internal Glu Repression D-NC-NC 252863_at At4g39800 inositol-3-phosphate synthase isozyme 1/myo-inositol-1-phosphate synthase 1/MI-1-P synthase 1/IPS 1 identical to SP|P42801 Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1-phosphate synthase 1) (MI-1-P synthase 1) (IPS 1) {Arabidopsis thaliana} (68417.m05637) 216 (C) Internal Glu Repression D-NC-NC 252652_at At3g44720 prephenate dehydratase family protein similar to bacterial PheA gene products (68416.m04813) 217 (C) Internal Glu Repression D-NC-NC 252377_at At3g47960 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile; PF00854 POT family (68416.m05229) 218 (C) Internal Glu Repression D-NC-NC 252343_at At3g48610 phosphoesterase family protein low similarity to SP|P95246 Phospholipase C 2 precursor (EC 3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam profile PF04185: Phosphoesterase family (68416.m05307) 219 (C) Internal Glu Repression D-NC-NC 252325_at At3g48560 acetolactate synthase, chloroplast/acetohydroxy-acid synthase (ALS) nearly identical to SP|P17597 Acetolactate synthase, chloroplast precursor (EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid synthase) (ALS) {Arabidopsis thaliana} (68416.m05302) 220 (C) Internal Glu Repression D-NC-NC 252272_at At3g49670 leucine-rich repeat transmembrane protein kinase, putative CLAVATA1 receptor kinase, Arabidopsis thaliana, EMBL: ATU96879 (68416.m05429) 221 (C) Internal Glu Repression D-NC-NC 252126_at At3g50950 disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. (68416.m05578) 222 (C) Internal Glu Repression D-NC-NC 252045_at At3g52450 U-box domain-containing protein similar to immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum] GI: 14582200; contains Pfam profile PF04564: U-box domain (68416.m05768) 223 (C) Internal Glu Repression D-NC-NC 252058_at At3g52470 harpin-induced family protein/HIN1 family protein/harpin-responsive family protein similar to harpin-induced protein hin1 (GI: 1619321) [Nicotiana tabacum] (68416.m05770) 224 (C) Internal Glu Repression D-NC-NC 251954_at At3g53670 expressed protein (68416.m05927) 225 (C) Internal Glu Repression D-NC-NC 251922_at At3g54030 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68416.m05974) 226 (C) Internal Glu Repression D-NC-NC 251855_at At3g54690 sugar isomerase (SIS) domain-containing protein/CBS domain-containing protein similar to SP|Q47334 Polysialic acid capsule expression protein kpsF {Escherichia coli}; contains Pfam profiles PF01380: sugar isomerase (SIS) domain, PF00571: CBS domain (68416.m06051) 227 (C) Internal Glu Repression D-NC-NC 251828_at At3g55070 expressed protein (68416.m06116) 228 (C) Internal Glu Repression D-NC-NC 251449_at At3g59920 Rab GDP dissociation inhibitor (GDI2) identical to Rab GDP dissociation inhibitor AtGDI2 [Arabidopsis thaliana] GI: 2446981 (68416.m06687) 229 (C) Internal Glu Repression D-NC-NC 251450_at At3g60030 squamosa promoter-binding protein-like 12 (SPL12) identical to squamosa promoter binding protein-like 12 [Arabidopsis thaliana] GI: 6006395; contains Pfam profiles PF03110: SBP domain, PF00023: Ankyrin repeat (68416.m06704) 230 (C) Internal Glu Repression D-NC-NC 251396_at At3g60750 transketolase, putative strong similarity to transketolase 1 [Capsicum annuum] GI: 3559814; contains Pfam profiles PF02779: Transketolase, pyridine binding domain, PF02780: Transketolase, C-terminal domain, PF00456: Transketolase, thiamine diphosphate binding domain (68416.m06796) 231 (C) Internal Glu Repression D-NC-NC 251310_at At3g61150 homeobox-leucine zipper family protein/homeodomain GLABRA2 like protein 1 (HD-GL2-1) similar to Anthocyaninless2 (ANL2) (GP: 5702094) Arabidopsis thaliana. EMBL: AF077335 (68416.m06843) 232 (C) Internal Glu Repression D-NC-NC 251200_at At3g63010 expressed protein similar to PrMC3 [Pinus radiata] GI: 5487873 (68416.m07078) 233 (C) Internal Glu Repression D-NC-NC 251122_at At5g01020 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68418.m00004) 234 (C) Internal Glu Repression D-NC-NC 251060_at At5g01820 CBL-interacting protein kinase 14 (CIPK14) identical to CBL-interacting protein kinase 14 [Arabidopsis thaliana] gi|13249127|gb|AAK16689; contains Pfam profiles PF00069: Protein kinase domain and PF03822: NAF domain; identical to cDNA CBL-interacting protein kinase 14 (CIPK14) GI: 13249126 (68418.m00101) 235 (C) Internal Glu Repression D-NC-NC 251074_at At5g01800 saposin B domain-containing protein contains Pfam profiles: PF00026 eukaryotic aspartyl protease, PF03489 surfactant protein B, PF05184 saposin-like type B, region 1 (68418.m00099) 236 (C) Internal Glu Repression D-NC-NC 251020_at At5g02270 ABC transporter family protein NBD-like protein POP, Arabidopsis thaliana, EMBL: AF127664 (68418.m00150) 237 (C) Internal Glu Repression D-NC-NC 250926_at At5g03555 permease, cytosine/purines, uracil, thiamine, allantoin family protein contains Pfam PF02133: permease, cytosine/purines, uracil, thiamine, allantoin family (68418.m00313) 238 (C) Internal Glu Repression D-NC-NC 250738_at At5g05730 anthranilate synthase, alpha subunit, component I-1 (ASA1) identical to SP|P32068 (68418.m00630) 239 (C) Internal Glu Repression D-NC-NC 250645_at At5g06700 expressed protein strong similarity to unknown protein (emb|CAB82953.1) (68418.m00757) 240 (C) Internal Glu Repression D-NC-NC 250193_at At5g14540 proline-rich family protein contains proline rich extensin domains, INTERPRO: IPR002965 (68418.m01704) 241 (C) Internal Glu Repression D-NC-NC 250054_at At5g17860 cation exchanger, putative (CAX7) contains similarity to SWISS-PROT: Q9HC58 NKX3_HUMAN Sodium/potassium/calcium exchanger 3 precursor {Homo sapiens}; Ca2+: Cation Antiporter (CaCA) Family member PMID: 11500563 (68418.m02093) 242 (C) Internal Glu Repression D-NC-NC 249627_at At5g37510 NADH-ubiquinone dehydrogenase, mitochondrial, putative similar to NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial from Solanum tuberosum [SP|Q43644] (68418.m04517) 243 (C) Internal Glu Repression D-NC-NC 249599_at At5g37990 S-adenosyl-L-methionine:carboxyl methyltransferase family protein similar to defense-related protein cjs1 [Brassica carinata][GI: 14009292], caffeine synthase [Camellia sinensis][GI: 9967143], SAM: jasmonic acid carboxyl methyltransferase [GI: 13676829] (68418.m04575) 244 (C) Internal Glu Repression D-NC-NC 249244_at At5g42270 FtsH protease, putative similar to FtsH protease GI: 13183728 from [Medicago sativa] (68418.m05145) 245 (C) Internal Glu Repression D-NC-NC 249247_at At5g42310 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat (68418.m05149) 246 (C) Internal Glu Repression D-NC-NC 249152_s_at At5g43370 inorganic phosphate transporter (PHT2) identical to inorganic phosphate transporter [Arabidopsis thaliana] GI: 2780348 (68418.m05301) 247 (C) Internal Glu Repression D-NC-NC 248968_at At5g45280 pectinacetylesterase, putative similar to pectinacetylesterase precursor GI: 1431629 from [Vigna radiata] (68418.m05558) 248 (C) Internal Glu Repression D-NC-NC 248697_at At5g48370 thioesterase family protein similar to SP|Q9R0X4 48 kDa acyl-CoA thioester hydrolase, mitochondrial precursor (EC 3.1.2.—) {Mus musculus}; contains Pfam profile PF03061: thioesterase family protein (68418.m05976) 249 (C) Internal Glu Repression D-NC-NC 248619_at At5g49630 amino acid permease 6 (AAP6) identical to amino acid permease 6 (AAP6) [Arabidopsis thaliana] GI: 1769887 (68418.m06141) 250 (C) Internal Glu Repression D-NC-NC 248573_at At5g49720 endo-1,4-beta-glucanase KORRIGAN (KOR)/cellulase (OR16pep) identical to endo-1,4-beta-D-glucanase KORRIGAN [Arabidopsis thaliana] GI: 3978258; similar to endo-1,4-beta-D-glucanase; cellulase GI: 5689613 from [Brassica napus]; identical to cDNA cellulase (OR16pep) GI: 1022806 (68418.m06157) 251 (C) Internal Glu Repression D-NC-NC 248263_at At5g53370 pectinesterase family protein (68418.m06632) 252 (C) Internal Glu Repression D-NC-NC 248200_at At5g54160 quercetin 3-O-methyltransferase 1/flavonol 3-O-methyltransferase 1/caffeic acid/5-hydroxyferulic acid O-methyltransferase (OMT1) identical to O-methyltransferase 1 [Arabidopsis thaliana][GI: 2781394], SP|Q9FK25 Quercatin 3-O-methyltransferase 1 (EC 2.1.1.76) (AtOMT1) (Flavonol 3-O-methyltransferase 1) (Caffeic acid/5-hydroxyferulic acid O-methyltransferase) {Arabidopsis thaliana} (68418.m06744) 253 (C) Internal Glu Repression D-NC-NC 248138_at At5g54960 pyruvate decarboxylase, putative strong similarity to pyruvate decarboxylase 1 [Vitis vinifera] GI: 10732644; contains InterPro entry IPR000399: Pyruvate decarboxylase (68418.m06845) 254 (C) Internal Glu Repression D-NC-NC 248034_at At5g55910 protein kinase, putative contains protein kinase domain, Pfam: PF00069 (68418.m06972) 255 (C) Internal Glu Repression D-NC-NC 248009_at At5g56280 COP9 signalosome subunit 6/CSN subunit 6 (CSN6A) identical to CSN complex subunit 6A [Arabidopsis thaliana] GI: 18056665, COP9 complex subunit 6 [Arabidopsis thaliana] GI: 15809663; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family; identical to cDNA CSN complex subunit 6A (CSN6A) GI: 18056664 (68418.m07024) 256 (C) Internal Glu Repression D-NC-NC 247853_at At5g58140 protein kinase family protein/non phototropic hypocotyl 1-like protein (NPL1) contains Pfam domains, PF00069: Protein kinase domain and PF00785: PAC motif; similar to SP: O48963 Nonphototropic hypocotyl protein 1 (Phototropin) [Mouse-ear cress] {Arabidopsis thaliana}; identical to cDNA non phototropic hypocotyl 1-like (NPL1) GI: 5391441 (68418.m07274) 257 (C) Internal Glu Repression D-NC-NC 247653_at At5g59950 RNA and export factor-binding protein, putative (68418.m07517) 258 (C) Internal Glu Repression D-NC-NC 247601_at At5g60850 Dof-type zinc finger domain-containing protein similar to zinc finger protein OBP4 gi: 5059396 from [Arabidopsis thaliana]; EMBL: AF155817 (68418.m07633) 259 (C) Internal Glu Repression D-NC-NC 247304_at At5g63850 amino acid transporter 4, putative (AAP4) identical to amino acid transporter GI: 608671 from [Arabidopsis thaliana]; (68418.m08015) 260 (C) Internal Glu Repression D-NC-NC 247262_at At5g64440 amidase family protein low similarity to enantiomerase-selective amidase [Rhodococcus sp.] GI: 152052; contains Pfam profile PF01425: Amidase (68418.m08095) 261 (C) Internal Glu Repression D-NC-NC 247152_at At5g65620 peptidase M3 family protein/thimet oligopeptidase family protein similar to SP|P27237 Oligopeptidase A (EC 3.4.24.70) {Salmonella typhimurium}; contains Pfam profile PF01432: Peptidase family M3 (68418.m08255) 262 (C) Internal Glu Repression D-NC-NC 246990_at At5g67360 cucumisin-like serine protease (ARA12) Asp48; almost identical to cucumisin-like serine protease (ARA12) GI: 3176874 from [Arabidopsis thaliana] (68418.m08494) 263 (C) Internal Glu Repression D-NC-NC 246901_at At5g25630 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat (68418.m03050) 264 (C) Internal Glu Repression D-NC-NC 246825_at At5g26260 meprin and TRAF homology domain-containing protein/MATH domain-containing protein similar to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI: 11993471; contains Pfam profile PF00917: MATH domain (68418.m03133) 265 (C) Internal Glu Repression D-NC-NC 246651_at At5g35170 adenylate kinase family protein contains Pfam profile: PF00406 adenylate kinase (68418.m04168) 266 (C) Internal Glu Repression D-NC-NC 246660_at At5g35180 expressed protein (68418.m04169) 267 (C) Internal Glu Repression D-NC-NC 246554_at At5g15450 heat shock protein 100, putative/HSP100, putative/heat shock protein clpB, putative/HSP100/ClpB, putative similar to HSP100/ClpB GI: 9651530 [Phaseolus lunatus] (68418.m01808) 268 (C) Internal Glu Repression D-NC-NC 246366_at At1g51850 leucine-rich repeat protein kinase, putative similar to light repressible receptor protein kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376 (68414.m05845) 269 (C) Internal Glu Repression D-NC-NC 246228_at At4g36430 peroxidase, putative identical to peroxidase [Arabidopsis thaliana] gi|6822093|emb|CAB71009; identical to cDNA class III peroxidase ATP31, GI: 17530561 (68417.m05175) 270 (C) Internal Glu Repression D-NC-NC 246247_at At4g36640 SEC14 cytosolic factor family protein/phosphoglyceride transfer family protein similar to polyphosphoinositide binding protein Ssh1p (GI: 2739044) {Glycine max, SEC14 cytosolic factor (Phosphatidylinositol/phosphatidylcholine transfer protein) (PI/PCTP) (SP: P24859) [Kluyveromyces lactis] and to SEC14 cytosolic factor (SP: P53989) [Candida glabrata] (68417.m05200) 271 (C) Internal Glu Repression D-NC-NC 246185_at At5g20980 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative/vitamin-B12-independent methionine synthase, putative/cobalamin-independent methionine synthase, putative strong similarity to SP|O50008 5- methyltetrahydropteroyltriglutamate-homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) {Arabidopsis thaliana}; contains Pfam profile PF01717: Methionine synthase, vitamin-B12 independent (68418.m02494) 272 (C) Internal Glu Repression D-NC-NC 246126_at At5g20070 MutT/nudix family protein low similarity to SP|Q19427 NADH pyrophosphatase (EC 3.6.1.—) (Caenorhabditis elegans); contains Pfam profile PF00293: NUDIX domain (68418.m02390) 273 (C) Internal Glu Repression D-NC-NC 246050_s_at At5g28900 calcium-binding EF hand family protein contains Pfam profile: PF00036 EF hand (68418.m03562) 274 (C) Internal Glu Repression D-NC-NC 245971_at At5g20730 auxin-responsive factor (ARF7) identical to auxin response factor 7 GI: 4104929 from [Arabidopsis thaliana] (68418.m02462) 275 (C) Internal Glu Repression D-NC-NC 245885_at At5g09440 phosphate-responsive protein, putative similar to phi-1 (phosphate-induced gene) [Nicotiana tabacum] GI: 3759184; contains Pfam profile PF04674: Phosphate-induced protein 1 conserved region (68418.m01093) 276 (C) Internal Glu Repression D-NC-NC 245875_at At1g26240 proline-rich extensin-like family protein similar to hydroxyproline-rich glycoprotein precursor gi|727264|gb|AAA87902; contains proline-rich extensin domains, INTERPRO: IPR002965 (68414.m03201) 277 (C) Internal Glu Repression D-NC-NC 245803_at At1g47128 cysteine proteinase (RD21A)/thiol protease identical to SP|P43297 Cysteine proteinase RD21A precursor (EC 3.4.22.—) {Arabidopsis thaliana}, thiol protease RD21A SP: P43297 from [Arabidopsis thaliana] (68414.m05222) 278 (C) Internal Glu Repression D-NC-NC 245780_at At1g45688 expressed protein (68414.m05201) 279 (C) Internal Glu Repression D-NC-NC 245759_at At1g66900 expressed protein (68414.m07603) 280 (C) Internal Glu Repression D-NC-NC 245612_at At4g14440 enoyl-CoA hydratase/isomerase family protein low similarity to PhaB [Pseudomonas putida] GI: 3253198, SP|P31551 Carnitine racemase {Escherichia coli}; contains Pfam profile PF00378 enoyl-CoA hydratase/isomerase family protein (68417.m02227) 281 (C) Internal Glu Repression D-NC-NC 245270_at At4g14960 tubulin alpha-6 chain (TUA6) nearly identical to SP|P29511 Tubulin alpha-6 chain {Arabidopsis thaliana} (68417.m02298) 282 (C) Internal Glu Repression D-NC-NC 245218_s_at At1g58842 283 (C) Internal Glu Repression D-NC-NC 245201_at At1g67840 ATP-binding region, ATPase-like domain-containing protein contains Pfam profile PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; similar to ESTs gb|AI995396.1, dbj|AV557393.1, and dbj|AV557055.1 (68414.m07743) 284 (C) Internal Glu Repression D-NC-NC 245211_at At5g12370 exocyst complex component Sec10-related low similarity to SP|O00471 Exocyst complex component Sec10 (hSec10) {Homo sapiens} (68418.m01455) 285 (C) Internal Glu Repression D-NC-NC 245101_at At2g40890 cytochrome P450 98A3, putative (CYP98A3) identical to Cytochrome P450 98A3 (SP|O22203) [Arabidopsis thaliana]; similar to gi: 17978651 from Pinus taeda (68415.m05046) 286 (C) Internal Glu Repression NC-I-I 267451_at At2g33710 AP2 domain-containing transcription factor family protein similar to RAP2.6 (GI: 17065542) (Arabidopsis thaliana) (68415.m04132) 287 (C) Internal Glu Repression NC-I-I 267246_at At2g30250 WRKY family transcription factor (68415.m03682) 288 (C) Internal Glu Repression NC-I-I 267261_at At2g23120 expressed protein (68415.m02758) 289 (C) Internal Glu Repression NC-I-I 267083_at At2g41100 touch-responsive protein/calmodulin-related protein 3, touch-induced (TCH3) identical to calmodulin-related protein 3, touch- induced SP: P25071 from [Arabidopsis thaliana] (68415.m05076) 290 (C) Internal Glu Repression NC-I-I 266832_at At2g30040 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68415.m03653) 291 (C) Internal Glu Repression NC-I-I 266749_at At2g47060 serine/threonine protein kinase, putative similar to Pto kinase interactor 1 (Pti1)[Lycopersicon esculentum] gi|3668069|gb|AAC61805 (68415.m05879) 292 (C) Internal Glu Repression NC-I-I 266299_at At2g29450 glutathione S-transferase (103-1A) identical to Swiss-Prot: P46421 glutathione S-transferase 103-1A [Arabidopsis thaliana] (68415.m03578) 293 (C) Internal Glu Repression NC-I-I 266172_at At2g39010 aquaporin, putative similar to plasma membrane aquaporin 2b GI: 7209560 from [Raphanus sativus] (68415.m04796) 294 (C) Internal Glu Repression NC-I-I 266010_at At2g37430 zinc finger (C2H2 type) family protein (ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2 type (68415.m04590) 295 (C) Internal Glu Repression NC-I-I 265670_s_at At2g32210 expressed protein (68415.m03936) 296 (C) Internal Glu Repression NC-I-I 265480_at At2g15970 cold-acclimation protein, putative (FL3-5A3) similar to cold acclimation WCOR413-like protein gamma form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar to stress-regulated protein SAP1 [Xerophyta viscosa] gi|21360376|gb|AAM47505; identical to cDNA cold acclimation protein WCOR413-like protein alpha form GI: 10121840, cold acclimation protein homolog [Arabidopsis thaliana] GI: 11127595 (68415.m01828) 297 (C) Internal Glu Repression NC-I-I 265460_at At2g46600 calcium-binding protein, putative similar to EF-hand Ca2+-binding protein CCD1 [Triticum aestivum] GI: 9255753 (68415.m05812) 298 (C) Internal Glu Repression NC-I-I 264652_at At1g08920 sugar transporter, putative similar to ERD6 protein {Arabidopsis thaliana} GI: 3123712, sugar-porter family proteins 1 and 2 [Arabidopsis thaliana] GI: 14585699, GI: 14585701; contains Pfam profile PF00083: major facilitator superfamily protein (68414.m00992) 299 (C) Internal Glu Repression NC-I-I 263478_at At2g31880 leucine-rich repeat transmembrane protein kinase, putative (68415.m03895) 300 (C) Internal Glu Repression NC-I-I 263379_at At2g40140 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and Pfam domain, PF00023: Ankyrin repeat (68415.m04937) 301 (C) Internal Glu Repression NC-I-I 263320_at At2g47180 galactinol synthase, putative similar to galactinol synthase, isoform GoIS-1 GI: 5608497 from [Ajuga reptans] (68415.m05892) 302 (C) Internal Glu Repression NC-I-I 262360_at At1g73080 leucine-rich repeat transmembrane protein kinase, putative similar to receptor protein kinase GI: 1389566 from [Arabidopsis thaliana] (68414.m08450) 303 (C) Internal Glu Repression NC-I-I 261979_at At1g37130 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana} (68414.m04639) 304 (C) Internal Glu Repression NC-I-I 259681_at At1g77760 nitrate reductase 1 (NR1) identical to SP|P11832 Nitrate reductase 1 (formerly EC 1.6.6.1) (NR1){Arabidopsis thaliana} (68414.m09053) 305 (C) Internal Glu Repression NC-I-I 259445_at At1g02400 gibberellin 2-oxidase, putative/GA2-oxidase, putative similar to GA2ox2 [GI: 4678368]; similar to dioxygenase GI: 1666096 from [Marah macrocarpus]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain (68414.m00186) 306 (C) Internal Glu Repression NC-I-I 258436_at At3g16720 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) (68416.m02135) 307 (C) Internal Glu Repression NC-I-I 258362_at At3g14280 expressed protein (68416.m01807) 308 (C) Internal Glu Repression NC-I-I 256526_at At1g66090 disease resistance protein (TIR-NBS class), putative domain signature TIR-NBS exists, suggestive of a disease resistance protein. (68414.m07501) 309 (C) Internal Glu Repression NC-I-I 256017_at At1g19180 expressed protein (68414.m02387) 310 (C) Internal Glu Repression NC-I-I 255568_at At4g01250 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA-binding domain (68417.m00164) 311 (C) Internal Glu Repression NC-I-I 253643_at At4g29780 expressed protein (68417.m04241) 312 (C) Internal Glu Repression NC-I-I 253638_at At4g30470 cinnamoyl-CoA reductase-related similar to cinnamoyl-CoA reductase from Pinus taeda [GI: 17978649], Saccharum officinarum [GI: 3341511] (68417.m04326) 313 (C) Internal Glu Repression NC-I-I 253414_at At4g33050 calmodulin-binding family protein contains Pfam profile PF00612: IQ calmodulin-binding motif (68417.m04703) 314 (C) Internal Glu Repression NC-I-I 253284_at At4g34150 C2 domain-containing protein similar to calcium-dependent protein kinase [Dunaliella tertiolecta] GI: 6644464; contains Pfam profile PF00168: C2 domain (68417.m04846) 315 (C) Internal Glu Repression NC-I-I 252906_at At4g39640 gamma-glutamyltranspeptidase family protein similar to SP|P19440 Gamma-glutamyltranspeptidase 1 precursor (EC 2.3.2.2) (Gamma-glutamyltransferase 1) (CD224 antigen) {Homo sapiens}; contains Pfam profilePF01019: Gamma-glutamyltranspeptidase (68417.m05602) 316 (C) Internal Glu Repression NC-I-I 252592_at At3g45640 mitogen-activated protein kinase, putative/MAPK, putative (MPK3) identical to mitogen-activated protein kinase homolog (AtMPK3)[Arabidopsis thaliana] SWISS-PROT: Q39023; PMID: 12119167 (68416.m04929) 317 (C) Internal Glu Repression NC-I-I 252474_at At3g46620 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) (68416.m05061) 318 (C) Internal Glu Repression NC-I-I 252483_at At3g46600 scarecrow transcription factor family protein scarecrow-like 11 - Arabidopsis thaliana, EMBL: AF036307 (68416.m05058) 319 (C) Internal Glu Repression NC-I-I 252315_at At3g48690 expressed protein similar to PrMC3 [Pinus radiata] GI: 5487873 (68416.m05317) 320 (C) Internal Glu Repression NC-I-I 251336_at At3g61190 BON1-associated protein 1 (BAP1) identical to BON1-associated protein 1 [Arabidopsis thaliana] GI: 15487384; contains Pfam profile PF00168: C2 domain; supporting cDNA gi|15487383|gb|AY045765.1| (68416.m06848) 321 (C) Internal Glu Repression NC-I-I 251272_at At3g61890 homeobox-leucine zipper protein 12 (HB-12)/HD-ZIP transcription factor 12 identical to homeobox-leucine zipper protein ATHB-12 (GI: 6899887) [Arabidopsis thaliana] (68416.m06951) 322 (C) Internal Glu Repression NC-I-I 251054_at At5g01540 lectin protein kinase, putative similar to receptor lectin kinase 3 [Arabidopsis thaliana] gi|4100060|gb|AAD00733; contains protein kinase domain, Pfam: PF00069: contains legume lectins alpha and beta domains, Pfam: PF00138 and Pfam: PF00139 (68418.m00069) 323 (C) Internal Glu Repression NC-I-I 250676_at At5g06320 harpin-induced family protein/HIN1 family protein/harpin-responsive family protein/NDR1/HIN1-like protein 3 similar to harpin- induced protein hin1 (GI: 1819321)[Nicotiana tabacum] (68418.m00708) 324 (C) Internal Glu Repression NC-I-I 250541_at At5g09520 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains. INTERPRO: IPR002965 (68418.m01101) 325 (C) Internal Glu Repression NC-I-I 249918_at At5g19240 expressed protein (68418.m02291) 326 (C) Internal Glu Repression NC-I-I 249237_at At5g42050 expressed protein similar to gda-1 [Pisum sativum] GI: 2765418 (68418.m05119) 327 (C) Internal Glu Repression NC-I-I 247708_at At5g59550 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) (68418.m07462) 328 (C) Internal Glu Repression NC-I-I 247279_at At5g64310 arabinogalactan-protein (AGP1) identical to gi: 3883120 gb: AAC77823 (68418.m08078) 329 (C) Internal Glu Repression NC-I-I 246962_s_at At5g24800 bZIP transcription factor family protein contains Pfam profile: PF00170 bZIP transcription factor; identical to cDNA bZIP protein BZO2H2 GI: 10954096 (68418.m02928) 330 (C) Internal Glu Repression NC-I-I 246821_at At5g26920 calmodulin-binding protein similar to calmodulin-binding protein TCB60 GI: 1698548 from [Nicotiana tabacum] (68418.m03210) 331 (C) Internal Glu Repression NC-I-I 246289_at At3g56880 VQ motif-containing protein contains PF05678: VQ motif (68416.m06327) 332 (C) Internal Glu Repression NC-I-I 245904_at At5g11110 sucrose-phosphate synthase, putative similar to sucrose-phosphate synthase isoform 1, Citrus unshiu, PIR: S72648 (68418.m01297) 333 (C) Internal Glu Repression NC-I-I 245051_at At2g23320 WRKY family transcription factor identical to WRKY DNA-binding protein 15 GI: 13506742 from [Arabidopsis thaliana] (68415.m02784) 334 (C) Internal Glu Repression NC-I-I 245041_at At2g26530 expressed protein (68415.m03183) 1 (D) External Glu induction NC-NC-I 266371_at At2g41410 calmodulin, putative identical to SP|P30188 Calmodulin-like protein {Arabidopsis thaliana} (68415.m05110) 2 (D) External Glu induction NC-NC-I 266116_at At2g02180 tobamovirus multiplication protein 3 (TOM3) identical to tobamovirus multiplication protein (TOM3) GI: 15425641 from [Arabidopsis thaliana] (68415.m00154) 3 (D) External Glu induction NC-NC-I 264415_at At1g43160 AP2 domain-containing protein RAP2.6 (RAP2.6) identical to AP2 domain containing protein RAP2.6 GI: 2281637 from [Arabidopsis thaliana] (68414.m04973) 4 (D) External Glu induction NC-NC-I 263901_at At2g36320 zinc finger (AN1-like) family protein contains Pfam domain, PF01428: AN1-like Zinc finger (68415.m04458) 5 (D) External Glu induction NC-NC-I 263228_at At1g30700 FAD-binding domain-containing protein similar to SP|P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) [Eschscholzia californica]; contains PF01565 FAD binding domain (68414.m03753) 6 (D) External Glu induction NC-NC-I 262901_at At1g59910 formin homology 2 domain-containing protein/FH2 domain-containing protein contains formin homology 2 domain, Pfam: PF02128 (68414.m06749) 7 (D) External Glu induction NC-NC-I 262887_at At1g14780 expressed protein (68414.m01767) 8 (D) External Glu induction NC-NC-I 262677_at At1g75860 expressed protein (68414.m08811) 9 (D) External Glu induction NC-NC-I 262496_at At1g21790 expressed protein (68414.m02727) 10 (D) External Glu induction NC-NC-I 262383_at At1g72940 disease resistance protein (TIR-NBS class), putative domain signature TIR-NBS exists, suggestive of a disease resistance protein. (68414.m08436) 11 (D) External Glu induction NC-NC-I 262166_at At1g74840 myb family transcription factor similar to myb-related transcription activator GI: 9279717 from [Arabidopsis thaliana] (68414.m08672) 12 (D) External Glu induction NC-NC-I 262133_at At1g78000 sulfate transporter (Sultr1;2) identical to sulfate transporter Sultr1;2 [Arabidopsis thaliana] GI: 7768660: contaisn Pfam profiles PF00916: Sulfate transporter family and PF01740: STAS domain; contains TIGRfam profile TIGR00815: sulfate permease (68414.m09089) 13 (D) External Glu induction NC-NC-I 261211_at At1g12780 UDP-glucose 4-epimerase/UDP-galactose 4-epimerase/Galactowaldenase identical to SP|Q42605 [GB: CAA90941] from [Arabidopsis thaliana] (Arch. Biochem. Biophys. 327 (1), 27-34 (1996)) (68414.m01484) 14 (D) External Glu induction NC-NC-I 260556_at At2g43620 chitinase, putative similar to basic endochitinase CHB4 precursor SP: Q06209 from [Brassica napus] (68415.m05422) 15 (D) External Glu induction NC-NC-I 259977_at At1g76590 zinc-binding family protein similar to zinc-binding protein [Pisum sativum] GI: 16117799; contains Pfam profile PF04640: Protein of unknown function, DUF597 (68414.m08912) 16 (D) External Glu induction NC-NC-I 258805_at At3g04010 glycosyl hydrolase family 17 protein similar to beta-1,3-glucanase GB: S12402 [Nicotiana sp], GB: CAA03908 [Citrus sinensis], GB: S44364 [Lycopersicon esculentum] (68416.m00422) 17 (D) External Glu induction NC-NC-I 258751_at At3g05890 hydrophobic protein (RCI2B)/low temperature and salt responsive protein (LTI6B) identical to SP|Q9ZNS6 Hydrophobic protein RCI2B (Low temperature and salt responsive protein LTI6B) {Arabidopsis thaliana} (68416.m00662) 18 (D) External Glu induction NC-NC-I 257087_at At3g20500 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase (68416.m02596) 19 (D) External Glu induction NC-NC-I 256417_s_at At3g11170 omega-3 fatty acid desaturase, chloroplast (FAD7) (FADD) identical to omega-3 fatty acid desaturase, chloroplast precursor SP: P46310 [Arabidopsis thaliana (Mouse-ear cress)]; identical to Pfam profile PF00487: Fatty acid desaturase; identical to cDNA plastid fatty acid desaturase GI: 809491 (68416.m01355) 20 (D) External Glu induction NC-NC-I 256185_at At1g51700 Dof-type zinc finger domain-containing protein (ADOF1) identical to cDNA adof1 mRNA for dof zinc finger protein, GI: 3608260; contains Pfam profile PF02701: Dof domain, zinc finger (68414.m05826) 21 (D) External Glu induction NC-NC-I 254850_at At4g12000 expressed protein (68417.m01909) 22 (D) External Glu induction NC-NC-I 254667_at At4g18280 glycine-rich cell wall protein-related glycine-rich protein 1.0 precursor, Phaseolus vulgaris, PIR1: S01821 (68417.m02713) 23 (D) External Glu induction NC-NC-I 252368_at At3g48520 cytochrome P450 family protein similar to Cytochrome P450 94A1 (P450-dependent fatty acid omega-hydroxylase) (SP: O81117) {Vicia sativa}; contains Pfam profile: PF00067 cytochrome P450 (68416.m05296) 24 (D) External Glu induction NC-NC-I 252291_s_at At3g49120 peroxidase, putative identical to peroxidase [Arabidopsis thaliana] gi|405811|emb|CAA50677 (68416.m05366) 25 (D) External Glu induction NC-NC-I 252040_at At3g52060 expressed protein contains Pfam profile PF03267: Arabidopsis protein of unknown function, DUF266 (68416.m05711) 26 (D) External Glu induction NC-NC-I 250793_at At5g05600 oxidoreductase, 2OG-Fe(11) oxygenase family protein similar to flavonol synthase [Citrus unshiu][gi: 4126403], leucoanthocyanidin dioxygenase [Daucus carota][gi: 5924383]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain (68418.m00609) 27 (D) External Glu induction NC-NC-I 250260_at At5g13810 glutaredoxin family protein (68418.m01613) 28 (D) External Glu induction NC-NC-I 249889_at At5g22540 expressed protein contains Pfam profile PF03140: Plant protein of unknown function (68418.m02630) 29 (D) External Glu induction NC-NC-I 248870_at At5g46710 zinc-binding family protein similar zinc-binding protein [Pisum sativum] GI: 16117799; contains Pfam profile PF04640: Protein of unknown function, DUF597 (68418.m05755) 30 (D) External Glu induction NC-NC-I 248199_at At5g54170 expressed protein weak similarity to SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP) {Homo sapiens} (68418.m06745) 31 (D) External Glu induction NC-NC-I 247706_at At5g59480 haloacid dehalogenase-like hydrolase family protein low similarity to SP|P53078 SSM1 protein {Saccharomyces cerevisiae}; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase (68418.m07454) 32 (D) External Glu induction NC-NC-I 246481_s_at At5g15960 stress-responsive protein (KIN1)/stress-induced protein (KIN1) identical to SP|P18612 Stress-induced KIN1 protein (Arabidopsis thaliana) (68418.m01866) 33 (D) External Glu induction NC-NC-I 246488_at At5g16010 3-oxo-5-alpha-steroid 4-dehydrogenase family protein/steroid 5-alpha-reductase family protein similar to steroid 5alpha-Reductase Rattus norvegicus, PIR: A34239 [SP|24008]; contains Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544 (68418.m01872) 34 (D) External Glu induction NC-NC-I 246253_at At4g37260 myb family transcription factor (MYB73) contains Pfam profile: PF00249 myb-like DNA-binding domain (68417.m05274) 35 (D) External Glu induction NC-NC-I 246097_at At5g20270 expressed protein contains Pfam domain, PF03006: Uncharacterised protein family (Hly-III/UPF0073) (68418.m02413) 36 (D) External Glu induction NC-NC-I 245781_at At1g45976 expressed protein (68414.m05206) 37 (D) External Glu induction NC-NC-I 245244_at At1g44350 IAA-amino acid hydrolase 6, putative (ILL6)/IAA-Ala hydrolase, putative virtually identical to gr1-protein from [Arabidopsis thaliana] GI: 3559811; similar to IAA-amino acid hydrolase GI: 3421384 from [Arabidopsis thaliana]; contains TIGRfam profile TIGR01891: amidohydrolase; contains Pfam profile PF01546: Peptidase family M20/M25/M40; identical to cDNA IAA-amino acid conjugate hydrolase-like protein (ILL6), partial cds GI: 17978837 (68414.m05110) 38 (D) External Glu repression NC-NC-D 267130_at At2g23390 expressed protein (68415.m02793) 39 (D) External Glu repression NC-NC-D 267050_at At2g41060 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI: 19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68415.m05070) 40 (D) External Glu repression NC-NC-D 266957_at At2g34640 expressed protein (68415.m04255) 41 (D) External Glu repression NC-NC-D 266856_at At2g26910 ABC transporter family protein similar to PDR5-like ABC transporter GI: 1514643 from [Spirodela polyrhiza] (68415.m03228) 42 (D) External Glu repression NC-NC-D 266709_at At2g03120 signal peptide peptidase family protein contains Pfam domain PF04258: Membrane protein of unknown function (DUF435) (68415.m00265) 43 (D) External Glu repression NC-NC-D 266395_at At2g43100 aconitase C-terminal domain-containing protein contains Pfam profile PF00694: Aconitase C-terminal domain (68415.m05350) 44 (D) External Glu repression NC-NC-D 266215_at At2g06850 xyloglucan:xyloglucosyl transferase/xyloglucan endotransglycosylase/endo-xyloglucan transferase (EXT) (EXGT-A1) identical to endo-xyloglucan transferase (ext) GI: 469484 and endoxyloglucan transferase (EXGT-A1) GI: 5533309 from [Arabidopsis thaliana] (68415.m00767) 45 (D) External Glu repression NC-NC-D 266093_at At2g37990 ribosome biogenesis regulatory protein (RRS1) family protein contains Pfam profile PF04939: Ribosome biogenesis regulatory protein (RRS1); similar to Ribosome biogenesis regulatory protein homolog (Swiss-Prot: Q15050) [Homo sapiens] (68415.m04663) 46 (D) External Glu repression NC-NC-D 264738_at At1g62250 expressed protein (68414.m07022) 47 (D) External Glu repression NC-NC-D 264360_at At1g03310 isoamylase, putative/starch debranching enzyme, putative similar to isoamylase isoform 2 [Solanum tuberosum] GI: 27728147. isoamylase from [Triticum aestivum] GI: 17932898, [Hordeum vulgare] GI: 21314275, [Oryza sativa] GI: 3252794; contains Pfam profiles PF00128: Alpha amylase catalytic domain, PF02922: Isoamylase N-terminal domain; ESTs gb|H36690, gb|AA712462, gb|AA651230 and gb|N95932 come from this gene (68414.m00309) 48 (D) External Glu repression NC-NC-D 263957_at At2g35880 expressed protein (68415.m04405) 49 (D) External Glu repression NC-NC-D 263924_at At2g36530 enolase identical to SWISS-PROT: P25696 enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)(2-phospho-D-glycerate hydrolyase) [Arabidopsis thaliana] (68415.m04481) 50 (D) External Glu repression NC-NC-D 283714_at At2g20610 aminotransferase, putative similar to nicotianamine aminotransferase from Hordeum vulgare [GI: 6498122, GI: 6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II (68415.m02411) 51 (D) External Glu repression NC-NC-D 263477_at At2g31790 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase (68415.m03881) 52 (D) External Glu repression NC-NC-D 262947_at At1g75750 gibberellin-regulated protein 1 (GASA1)/gibberellin-responsive protein 1 identical to SP|P46689 Gibberellin-regulted protein 1 precursor {Arabidopsis thaliana}; supporting cDNA gi|887938|gb|U11766.1|ATU11766 (68414.m08798) 53 (D) External Glu repression NC-NC-D 262840_at At1g14900 high-mobility-group protein/HMG-I/Y protein nearly identical to high-mobility-group protein HMG-I/Y protein [Arabidopsis thaliana] GI: 1429211; contains Pfam profiles PF00538: linker histone H1 and H5 family, PF02178: AT hook motif (68414.m01781) 54 (D) External Glu repression NC-NC-D 262433_s_at At1g47500 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI: 1899187 from [Nicotiana tabacum] (68414.m05272) 55 (D) External Glu repression NC-NC-D 262274_at At1g68720 cytidine/deoxycytidylate deaminase family protein contains Pfam profile PF00383: Cytidine and deoxycytidylte deaminase zinc- binding region (68414.m07851) 56 (D) External Glu repression NC-NC-D 26094_at At1g56110 nucleolar protein Nop56, putative similar to XNop56 protein [Xenopus laevis] GI: 14799394; contains Pfam profile PF01798: Putative snoRNA binding domain (68414.m06443) 57 (D) External Glu repression NC-NC-D 261859_at At1g50490 ubiquitin-conjugating enzyme 20 (UBC20) nearly identical to ubiquitin-conjugating enzyme UBC20 [Arabidopsis thaliana] GI: 22530867; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme (68414.m05682) 58 (D) External Glu repression NC-NC-D 261603_at At1g9600 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein ACBF GB: U90212 GI: 1899187 from [Nicotiana tabacum] (68414.m05561) 59 (D) External Glu repression NC-NC-D 261350_at At1g79770 expressed protein (68414.m09308) 60 (D) External Glu repression NC-NC-D 260967_at At1g12230 transaldolase, putative similar to Swiss-Prot: P30148 transaldolase B (EC 2.2.1.2) [Escherichia coli O157: H7] (68414.m01415) 61 (D) External Glu repression NC-NC-D 260830_at At1g06760 histone H1, putative similar to histone H1-1 GB: CAA44312 GI: 16314 from [Arabidopsis thaliana]; identical to cDNA H1-1C mRNA for histone H1-1 (partial) GI: 732560 (68414.m00718) 62 (D) External Glu repression NC-NC-D 260637_at At1g62380 1-aminocyclopropane-1-carboxylate oxidase, putative/ACC oxidase, putative nearly identical to ACC oxidase (ACC ox1) GI: 587086 from [Brassica oleracea] (68414.m07038) 63 (D) External Glu repression NC-NC-D 260615_at At1g53240 malate dehydrogenase [NAD], mitochondrial identical to mitochondrial NAD-dependent malate dehydrogenase GI: 3929649 SP|Q9ZP06 from [Arabidopsis thaliana]; contains InterPro entry IPR001236: Lactate/malate dehydrogenase (68414.m06033) 64 (D) External Glu repression NC-NC-D 260487_at At1g51510 RNA-binding protein, putative similar to RNA-binding protein 8 (Ribonucleoprotein RBM8) SP: Q9Y5S9 from [Homo sapiens], RNA- binding protein Y14 [Xenopus laevis] GI: 11034807; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68414.m05797) 65 (D) External Glu repression NC-NC-D 260385_at At1g74090 sulfotransferase family protein similar to SP|P52837 Flavonol 4′-sulfotransferase (EC 2.8.2.—) (F4-ST) {Flaveria chloraefolia}; contains Pfam profile PF00685: Sulfotransferase domain (68414.m08581) 66 (D) External Glu repression NC-NC-D 260347_at At1g69420 zinc finger (DHHC type) family protein contains Pfam profile: PF01529: DHHC zinc finger domain (68414.m07974) 67 (D) External Glu repression NC-NC-D 260285_at At1g80560 3-isopropylmalate dehydrogenase, chloroplast, putative strong similarity to 3-ISOPROPYLMALATE DEHYDROGENASE PRECURSOR GB: P29102 SP|P29102 from [Brassica napus] (68414.m09445) 68 (D) External Glu repression NC-NC-D 259375_at At3g16370 GDSL-motif lipase/hydrolase family protein similar to family II lipases EXL3 GI: 15054386, EXL1 GI: 15054382, EXL2 GI: 15054384 from [Arabidopsis thaliana]; contains Pfam profile: PF00657 Lipase Acylhydrolase with GDSL-like motif (68416.m02071) 69 (D) External Glu repression NC-NC-D 259381_s_at At3g16390 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI: 2997767, epithiospecifier [Arabidopsis thaliana] GI: 16118845; contains Pfam profiles PF01419 jacalin-like lectin family, PF01344 Ketch motif (68416.m02075) 70 (D) External Glu repression NC-NC-D 258920_at At3g10520 non-symbiotic hemoglobin 2 (HB2) (GLB2) identical to SP|O24521 Non-symbiotic hemoglobin 2 (Hb2) (ARAth GLB2) {Arabidopsis thaliana} (68416.m01262) 71 (D) External Glu repression NC-NC-D 258521_at At3g06680 60S ribosomal protein L29 (RPL29B) similar to 60S ribosomal protein L29 GB: P25886 from (Rattus norvegicus) (68416.m00788) 72 (D) External Glu repression NC-NC-D 258208_at At3g13930 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide S-acetytransferase [Zea mays] GI: 5669871; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain (68416.m01759) 73 (D) External Glu repression NC-NC-D 257822_at At3g25230 peptidyl-prolyl cis-trans isomerase/FK506-binding protein (ROF1) identical to rotamase FKBP (ROF1) GB: U49453 [Arabidopsis thaliana] (Mol. Gen. Genet. 252 (5), 510-517 (1996)) (68416.m03152) 74 (D) External Glu repression NC-NC-D 257774_at At3g29250 short-chain dehydrogenase/reductase (SDR) family protein similar to 3-beta-hydroxysteroiddehydrogenase GI: 15983819 from [Digitalis lanata]; contains Pfam profile: PF00106 short chain dehydrogenase (68416.m03670) 75 (D) External Glu repression NC-NC-D 257311_at At3g26570 phosphate transporter family protein contains Pfam profile: PF01384 phosphate transporter family (68416.m03316) 76 (D) External Glu repression NC-NC-D 257174_at At3g27190 uracil phosphoribosyltransferase, putative/UMP pyrophosphorylase, putative/UPRTase, putative similar to SP|O65583 Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}; contains Pfam profile PF00485: Phosphoribulokinase/Uridine kinase family (68416.m03400) 77 (D) External Glu repression NC-NC-D 257125_at At3g20050 T-complex protein 1 alpha subunit/TCP-1-alpha/chaperonin (CCT1) identical to SWISS-PROT: P28769-T-complex protein 1, alpha subunit (TCP-1-alpha) [Arabidopsis thaliana] (68416.m02536) 78 (D) External Glu repression NC-NC-D 256628_at At3g20000 porin family protein low similarity to haymaker protein [Mus musculus] GI: 17834089, mitochondrial outer membrane protein MOM35 [Mus musculus] GI: 6650562; contains Pfam profile PF01459: Eukaryotic porin (68416.m02530) 79 (D) External Glu repression NC-NC-D 256547_at At3g14840 leucine-rich repeat family protein/protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain; contains 2 predicted transmembrane domains (68416.m01874) 80 (D) External Glu repression NC-NC-D 256341_at At1g72040 deoxynucleoside kinase family contains Pfam profile: PF01712 deoxynucleoside kinase (68414.m08327) 81 (D) External Glu repression NC-NC-D 256299_at At1g89530 expansin, putative (EXP1) identical to expansin (At-EXP1) [Arabidopsis thaliana] GI: 1041702; alpha-expansin gene family, PMID: 11641069 (68414.m07993) 82 (D) External Glu repression NC-NC-D 256072_at At1g18080 WD-40 repeat family protein/auxin-dependent protein (ARCA)/guanine nucleotide-binding protein beta subunit, putative identical to SP|O24456 Guanine nucleotide-binding protein beta subunit-like protein (WD-40 repeat auxin-dependent protein ARCA) {Arabidopsis thaliana}; contains 7 WD-40 repeats (PF00400) (68414.m02238) 83 (D) External Glu repression NC-NC-D 255783_at At1g19870 calmodulin-binding family protein contains Pfam profile: PF00612 IQ calmodulin-binding motif (68414.m02492) 84 (D) External Glu repression NC-NC-D 255482_at At4g02510 chloroplast outer membrane protein, putative similar to chloroplast protein import component Toc159 [Pisum sativum] GI: 8489806, chloroplast outer envelope protein 86 [Pisum sativum] GI: 599958, GTP-binding protein [Pisum sativum] GI: 576509 (68417.m00343) 85 (D) External Glu repression NC-NC-D 255052_at At4g09720 Ras-related GTP-binding protein, putative similar to GTP-binding protein RAB7A from [Lotus japonicus] (68417.m01596) 86 (D) External Glu repression NC-NC-D 255020_at At4g10320 isoleucyl-tRNA synthetase, putative/isoleucine-tRNA ligase, putative similar to SP|P41252 Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5) (Isoleucine-tRNA ligase) (IleRS) (IRS) {Homo sapiens}; contains Pfam profile PF00133: tRNA synthetases class I (I, L, M and V) (68417.m01697) 87 (D) External Glu repression NC-NC-D 254981_at At4g10480 nascent polypeptide associated complex alpha chain protein, putative/alpha-NAC, putative similar to alpha-NAC, non-muscle form [Mus musculus] GI: 1666690; contains Pfam profiles PF01849: NAC domain, PF00627: UBA/TS-N domain (68417.m01720) 88 (D) External Glu repression NC-NC-D 254811_at At4g12230 esterase/lipase/thioesterase family protein low similarity to 2-hydroxy-6-ketonona-2,4-dienedoic acid hydrolase; OhpC [Rhodococcus sp.] GI: 8926386; contains Interpro entry IPR000379 (68417.m01940) 89 (D) External Glu repression NC-NC-D 254887_at At4g13770 cytochrome P450 family protein (68417.m02136) 90 (D) External Glu repression NC-NC-D 254609_at At4g18970 GDSL-motif lipase/hydrolase family protein similar to family II lipases EXL3 GI: 15054386, EXL1 GI: 15054382, EXL2 GI: 15054384 from [Arabidopsis thaliana]; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase (68417.m02794) 91 (D) External Glu repression NC-NC-D 254372_at At4g21620 glycine-rich protein (68417.m03134) 92 (D) External Glu repression NC-NC-D 254080_at At4g25630 fibrillarin 2 (FIB2) identical to fibrillarin 2 GI: 9965655 from [Arabidopsis thaliana] (68417.m03691) 93 (D) External Glu repression NC-NC-D 253777_at At4g28450 transducin family protein/WD-40 repeat family protein SOF1 (involved in rRNA processing) protein-yeast (68417.m04071) 94 (D) External Glu repression NC-NC-D 253666_at At4g30270 MERI-5 protein (MERI-5) (MERI58)/endo-xyloglucan transferase/xyloglucan endo-1,4-beta-D-glucanase (SEN4) identical to endo xyloglucan transferase gi: 944810, SP|P24806 MERI-5 protein precursor (Endo-xyloglucan transferase) (Xyloglucan endo-1,4-beta- D-glucanase) {Arabidopsis thaliana} (68417.m04303) 95 (D) External Glu repression NC-NC-D 253562_at At4g31130 expressed protein (68417.m04419) 96 (D) External Glu repression NC-NC-D 253233_at At4g34290 SWIB complex BAF60b domain-containing protein contains Pfam profile PF02201: BAF60b domain of the SWIB complex (68417.m04874) 97 (D) External Glu repression NC-NC-D 253013_at At4g37910 heat shock protein 70, mitochondrial, putative/HSP70, mitochondrial, putative strong similarity to SP|Q01899 Heat shock 70 kDa protein, mitochondrial precursor {Phaseotus vulgaris} (68417.m05361) 98 (D) External Glu repression NC-NC-D 252712_at At3g43800 glutathione S-transferase, putative glutathione transferase, papaya, PIR: T09781 (68416.m04681) 99 (D) External Glu repression NC-NC-D 252661_at At3g44450 expressed protein (68416.m04777) 100 (D) External Glu repression NC-NC-D 252492_at At3g46740 chloroplast outer envelope protein, putative similar to chloroplastic outer envelope membrane protein (OEP75) [Pisum sativum] GI: 633607; contains Pfam profile PF01103: outer membrane protein, OMP85 family (68416.m05074) 101 (D) External Glu repression NC-NC-D 252327_at At3g48740 nodulin MtN3 family protein similar to MtN3 GI: 1619602 (root nodule development) from [Medicago truncatula] (68416.m05322) 102 (D) External Glu repression NC-NC-D 252239_at At3g49990 expressed protein (68416.m05466) 103 (D) External Glu repression NC-NC-D 252182_at At3g50670 U1 small nuclear ribonucleoprotein 70 (U1-70k) (68416.m05542) 104 (D) External Glu repression NC-NC-D 252115_at At3g51600 nonspecific lipid transfer protein 5 (LTP5) identical to SP|Q9XFS7 Nonspecific lipid-transfer protein 5 (LTP 5) {Arabidopsis thaliana} (68416.m05654) 105 (D) External Glu repression NC-NC-D 251963_at At3g53570 protein kinase (AFC1) (AME2) identical to protein kinase AFC1 (EC 2.7.1.—) [Arabidopsis thaliana] (68416.m05915) 106 (D) External Glu repression NC-NC-D 251638_at At3g57490 40S ribosomal protein S2 (RPS2D) 40S ribosomal protein S2 - Arabidopsis thaliana, SWISSPROT: RS2_ARATH (68416.m06400) 107 (D) External Glu repression NC-NC-D 251322_at At3g61440 cysteine synthase, putative/O-acetylserine (thiol)-lyase, putative/O-acetylserine sulfhydrylase, putative identical to cysteine synthase (EC 4.2.99.8) [Arabidopsis thaliana] GI: 5824334; contains Pfam profile PF00291: Pyridoxal-phosphate dependent enzyme (68416.m06881) 108 (D) External Glu repression NC-NC-D 251264_at At3g62120 tRNA synthetase class II (G, H, P and S) family protein similar to SP|P07814 Bifunctional aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate-tRNA ligase); Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline-tRNA ligase)] {Homo sapiens}; contains Pfam profiles PF00587: tRNA synthetase class II core domain (G, H, P, S and T), PF03129: Anticodon binding domain (68416.m06979) 109 (D) External Glu repression NC-NC-D 250973_at At5g02870 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL: CAA79104 (68418.m00230) 110 (D) External Glu repression NC-NC-D 250936_at At5g03120 expressed protein (68418.m00260) 111 (D) External Glu repression NC-NC-D 250918_at At5g03610 GDSL-motif lipase/hydrolase family protein low similarity to SP|P40602 Anther-specific proline-rich protein APG precursor {Arabidopsis thaliana}; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase (68418.m00320) 112 (D) External Glu repression NC-NC-D 250832_at At5g04950 nicotianamine synthase, putative similar to nicotianamine synthase [Lycopersicon esculentum][GI: 4753801], nicotianamine synthase 2 [Hordeum vulgare][GI: 4894912] (68418.m00524) 113 (D) External Glu repression NC-NC-D 248797_at At5g47210 nuclear RNA-binding protein, putative similar to nuclear RNA binding protein GI: 6492264 from [Arabidopsis thaliana] (68418.m05821) 114 (D) External Glu repression NC-NC-D 248582_at At5g49910 heat shock protein 70/HSP70 (HSC70-7) identical to heat shock protein 70 [Arabidopsis thaliana] GI: 6746592 (68418.m06180) 115 (D) External Glu repression NC-NC-D 247965_at At5g56540 arabinogalactan-protein (AGP14) identical to gi|10880505|gb|AAG24262 (68418.m07056) 116 (D) External Glu repression NC-NC-D 247900_at At5g57290 60S acidic ribosomal protein P3 (RPP3B) (68418.m07157) 117 (D) External Glu repression NC-NC-D 247569_at At5g61240 leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam: PF00560, INTERPRO: IPR001611; contains similarity to Hcr2-0B [Lycopersicon esculentum] gi|3894387|gb|AAC78593 (68418.m07681) 118 (D) External Glu repression NC-NC-D 247157_at At5g65770 nuclear matrix constituent protein-related low similarity to nuclear matrix constituent protein 1 (NMCP1) [Daucus carota] GI: 2190187 (68418.m08276) 119 (D) External Glu repression NC-NC-D 247076_at At5g66510 bacterial transferase hexapeptide repeat-containing protein contains Pfam profile PF00132: Bacterial transferase hexapeptide (four repeats) (68418.m08386) 120 (D) External Glu repression NC-NC-D 246860_at At5g25840 expressed protein (68418.m03066) 121 (D) External Glu repression NC-NC-D 246845_at At5g26707 122 (D) External Glu repression NC-NC-D 246809_s_at At5g27140 SAR DNA-binding protein, putative strong similarity to SAR DNA-binding protein-1 [Pisum sativum] GI: 3132696; contains Pfam profile PF01798: Putative snoRNA binding domain (68418.m03239) 123 (D) External Glu repression NC-NC-D 245714_at At5g04280 glycine-rich RNA-binding protein (68418.m00421) 124 (D) External Glu repression NC-NC-D 245350_at At4g16830 nuclear RNA-binding protein (RGGA) identical to nuclear RNA binding protein GI: 6492264 from [Arabidopsis thaliana] (68417.m02540) 125 (D) External Glu repression NC-NC-D 245277_at At4g15550 UDP-glucose:indole-3-acetate beta-D-glucosyltransferase (IAGLU) identical to UDP-glucose:indole-3-acetate beta-D- glucosyltransferase (iaglu) GI: 2149126 from [Arabidopsis thaliana] (68417.m02376) 126 (D) External Glu repression NC-NC-D 244980_at rpl36 ribosomal protein L36 1 (E) Internal/External Glu I-D-I 249923_at At5g19120 expressed protein low similarity to extracellular dermal glycoprotein EDGP precursor [Daucus carota] GI: 285741, SP|P13917 Basic induction 7S globulin precursor {Glycine max} (68418.m02275) 2 (E) Internal/External Glu I-D-I 249862_at At5g22920 zinc finger (C3HC4-type RING finger) family protein contains Pfam profiles: PF05495 CHY zinc finger, PF00097 zinc finger, C3HC4 induction type (RING finger) (68418.m02680) 3 (E) Internal/External Glu I-D-I 246114_at At5g20250 raffinose synthase family protein/seed imbibition protein, putative (din10) similar to seed imbibition protein GB: AAA32975 induction GI: 167100 from [Hordeum vulgare]; contains nonconsensus AT donor splice site at intron 1; contains Pfam profile PF05691: Raffinose synthase or seed imbibition protein Sip1; identical to cDNA seed imbibition protein (din10) partial cds GI: 10834551 (68418.m02410) 4 (E) Internal/External Glu I-NC-I 267461_at At2g33830 dormancy/auxin associated family protein contains Pfam profile: PF05564 dormancy/auxin associated protein (68415.m04150) induction 5 (E) Internal/External Glu I-NC-I 266995_at At2g34500 cytochrome P450 family protein similar to Cytochrome P450 61 (C-22 sterol desaturase) (SP: P54781) {Saccharomyces cerevisiae} induction (68415.m04237) 6 (E) Internal/External Glu I-NC-I 266984_at At2g39570 ACT domain-containing protein contains Pfam ACT domain PF01842 (68415.m04854) induction 7 (E) Internal/External Glu I-NC-I 266259_at At2g27830 expressed protein (68415.m03374) induction 8 (E) Internal/External Glu I-NC-I 265111_at At1g62510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family induction domain PF00234 (68414.m07053) 9 (E) Internal/External Glu I-NC-I 264524_at At1g10070 branched-chain amino acid aminotransferase 2/branched-chain amino acid transaminase 2 (BCAT2) identical to SP|Q9M439 induction Branched-chain amino acid aminotransferase 2, chloroplast precursor (EC 2.6.1.42) (Atbcat-2) {Arabidopsis thaliana}; contains Pfam profile: PF01063 aminotransferase class IV (68414.m01136) 10 (E) Internal/External Glu I-NC-I 263157_at At1g54100 aldehyde dehydrogenase, putative/antiquitin, putative strong similarity to SP|Q41247 Aldehyde dehydrogenase family 7 member induction A1 (EC 1.2.1.3) (Antiquitin 1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) {Brassica napus}; similar to turgor-responsive protein 28G (aldehyde dehydrogenase family 7 member A1) [Pisum sativum] SWISS-PROT: P25795 (68414.m06166) 11 (E) Internal/External Glu I-NC-I 262399_at At1g49500 expressed protein (68414.m05548) induction 12 (E) Internal/External Glu I-NC-I 261135_at At1g19610 plant defensin-fusion protein, putative (PDF1.4) plant defensin protein family member, personal communication, Bart Thomma induction (Bart.Thomma@agr.kuleuven.ac.be); similar to SWISS-PROT: P30224, Cysteine-rich antifungal protein 1 precursor (AFP1)[Arabidopsis thaliana] (68414.m02443) 13 (E) Internal/External Glu I-NC-I 259431_at At1g01620 plasma membrane intrinsic protein 1C (PIP1C)/aquaporin PIP1.3 (PIP1.3)/transmembrane protein B (TMPB) identical to plasma induction membrane intrinsic protein 1c SP: Q08733 from [Arabidopsis thaliana] (68414.m00079) 14 (E) Internal/External Glu I-NC-I 258939_at At3g10020 expressed protein (68416.m01202) induction 15 (E) Internal/External Glu I-NC-I 258527_at At3g06850 branched chain alpha-keto acid dehydrogenase E2 subunit (din3) identical to branched chain alpha-keto acid dehydrogenase E2 induction subunit (din3) [Arabidopsis thaliana] GI: 7021284 (68416.m00812) 16 (E) Internal/External Glu I-NC-I 258402_at At3g15450 expressed protein similar to auxin down-regulated protein ARG10 [Vigna radiata] GI: 2970051, wali7 (aluminum-induced protein) induction [Triticum aestivum] GI: 451193 (68416.m01960) 17 (E) Internal/External Glu I-NC-I 258225_at At3g15630 expressed protein (68416.m01982) induction 16 (E) Internal/External Glu I-NC-I 258005_at At3g19390 cysteine proteinase, putative/thiol protease, putative contains similarity to cysteine proteinase RD21A (thiol protease) GI: 435619, induction SP: P43297 from [Arabidopsis thaliana] (68416.m02459) 19 (E) Internal/External Glu I-NC-I 256894_at At3g21870 cyclin family protein similar to cyclin 2 [Trypanosoma brucei] GI: 7339572, cyclin 6 [Trypanosoma cruzi] GI: 12005317; contains induction Pfam profile PF00134: Cyclin, N-terminal domain (68416.m02758) 20 (E) Internal/External Glu I-NC-I 253279_at At4g34030 methylcrotonyl-CoA carboxylase beta chain, mitochondrial/3-methylcrotonyl-CoA carboxylase 2 (MCCB) identical to SP|Q9LDD8 induction Methylcrotonyl-CoA carboxylase beta chain, mitochondrial precursor (EC 6.4.1.4) (3-Methylcrotonyl-CoA carboxylase 2) (MCCase beta subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase beta subunit) {Arabidopsis thaliana}; contains Pfam profile: PF01039 carboxyl transferase domain (68417.m04829) 21 (E) Internal/External Glu I-NC-I 253061_at At4g37610 TAZ zinc finger family protein/BTB/POZ domain-containing protein contains Pfam PF00851: BTB/POZ domain; contains Pfam induction PF02135: TAZ zinc finger; similar to Speckle-type POZ protein (SP: O43791) [Homo sapiens] (68417.m05321) 22 (E) Internal/External Glu I-NC-I 252415_at At3g47340 asparagine synthetase 1 [glutamine-hydrolyzing]/glutamine-dependent asparagine synthetase 1 (ASN1) identical to SP|P49078 induction Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) (Glutamine-dependent asparagine synthetase) {Arabidopsis thaliana} (68416.m05145) 23 (E) Internal/External Glu I-NC-I 251642_at At3g57520 alkaline alpha galactosidase, putative similar to alkaline alpha galactosidase II [Cucumis melo] GI: 29838631; contains Pfam profile induction PF05691: Raffinose synthase or seed imbibition protein Sip1 (68416.m06403) 24 (E) Internal/External Glu I-NC-I 248606-at At5g49450 bZIP family transcription factor similar to bZIP transcription factor GI: 1769891 from [Arabidopsis thaliana] (68418.m06118) induction 25 (E) Internal/External Glu I-NC-I 247585_at At5g60680 expressed protein contains Pfam profile PF04520: Protein of unknown function, DUF584 (68418.m07615) induction 26 (E) Internal/External Glu NC-D-I 255742_at At1g25560 AP2 domain-containing transcription factor, putative similar to DNA-binding protein RAV2 GI: 3868859 from [Arabidopsis thaliana] induction (68414.m03173) 27 (E) Internal/External Glu NC-D-NC 267523_at At2g30610 induction 28 (E) Internal/External Glu NC-D-NC 267337_at At2g39980 transferase family protein contains Pfam profile PF02458 transferase family (68415.m04913) induction 29 (E) Internal/External Glu NC-D-NC 267230_at At2g44080 expressed protein (68415.m05482) induction expansin, putative (EXP3) identical to Alpha-expansin 3 precursor (AI-EXP3)[Arabidopsis thaliana] SWISS-PROT: O80932; alpha- 30 (E) Internal/External Glu NC-D-NC 267158_at At2g37640 expansin gene family, PMID: 11641069 (68415.m04617) induction 31 (E) Internal/External Glu NC-D-NC 266463_at At2g47840 tic20 protein-related similar to Tic20 (GI: 3769673) [Pisum sativum] (68415.m05971) induction 32 (E) Internal/External Glu NC-D-NC 265384_at At2g20760 expressed protein (68415.m02440) induction 33 (E) Internal/External Glu NC-D-NC 264508_at At1g09570 phytochrome A (PHYA) identical to SP|P14712 Phytochrome A {Arabidopsis thaliana} (68414.m01073) induction 34 (E) Internal/External Glu NC-D-NC 264188_at At1g54690 histone H2A, putative strong similarity to histone H2A GI: 3204129 SP|O65759 from Cicer arietinum, Picea abies SP|P35063; induction contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 (68414.m06235) 35 (E) Internal/External Glu NC-D-NC 263710_at At1g09330 expressed protein contains 3 transmembrane domains; contains Pfam profile PF05832: Eukaryotic protein of unknown function induction (68414.m01044) 36 (E) Internal/External Glu NC-D-NC 263597_at At2g01870 expressed protein (68415.m00120) induction 37 (E) Internal/External Glu NC-D-NC 262215_at At1g74790 expressed protein contains similarity to hedgehog-interacting protein GI: 4868122 from [Mus musculus] (68414.m08685) induction 38 (E) Internal/External Glu NC-D-NC 262024_at At1g35620 thioredoxin family protein similar to SP|Q43116 Protein disulfide isomerase precursor (PDI) (EC 5.3.4.1) {Ricinus communis}; induction contains Pfam profile PF00085: Thioredoxin (68414.m04425) 39 (E) Internal/External Glu NC-D-NC 261937_at At1g22570 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family (68414.m02818) induction 40 (E) Internal/External Glu NC-D-NC 260410_at At1g69870 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family (68414.m08041) induction 41 (E) Internal/External Glu NC-D-NC 260266_at At1g68520 zinc finger (B-box type) family protein contains Pfam profile: PF00643 B-box zinc finger (68414.rn07827) induction 42 (E) Internal/External Glu NC-D-NC 260037_at At1g68840 DNA-binding protein RAV2 (RAV2)/AP2 domain-containing protein RAP2.8 identical to RAV2 GI: 3868859 from [Arabidopsis induction thaliana], AP2 domain containing protein RAP2.8 [Arabidopsis thaliana] GI: 2281641; contains Pfam profile: PF00847 AP2-domain (68414.m07873) 43 (E) Internal/External Glu NC-D-NC 259504_at At1g15690 pyrophosphate-energized vacuolar membrane proton pump/pyrophosphate-energized inorganic pyrophosphatase (AVP-3) induction identical to pyrophosphate-energized vacuolar membrane proton pump (pyrophosphate-energized inorganic pyrophosphatase) SP: P31414 from [Arabidopsis thaliana] (68414.m01883) 44 (E) Internal/External Glu NC-D-NC 258809_at At3g04070 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAM induction GB: CAA63101 [Petunia x hybrida] (68416.m00430) 45 (E) Internal/External Glu NC-D-NC 258299_at At3g23410 alcohol oxidase-related similar to long chain fatty alcohol oxidase from Candida cloacae [GI: 698351], Candida tropicalis induction [GI: 6983594] (68416.m02951) 46 (E) Internal/External Glu NC-D-NC 257044_at At3g19720 dynamin family protein identical to cDNA dynamin-like protein (ARC5) GI: 30349145; contains Pfam profile PF00350: Dynamin induction family (68416.m02497) 47 (E) Internal/External Glu NC-D-NC 255540_at At4g01800 preprotein translocase secA subunit, putative similar to preprotein translocase secA subunit, chloroplast [precursor] SP: Q9STI0 induction from [Arabidopsis thaliana]; non-consensus GA donor splice site at exon 4 (68417.m00237) 48 (E) Internal/External Glu NC-D-NC 254456_at At4g21150 ribophorin II (RPN2) family protein contains Pfam domain PF05817: Ribophorin II (RPN2) (68417.m03057) induction 49 (E) Internal/External Glu NC-D-NC 254250_at At4g23290 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain (68417.m03356) induction 50 (E) Internal/External Glu NC-D-NC 254089_at At4g24800 MA3 domain-containing protein similar to programmed cell death 4 protein [Gallus gallus] GI: 12958564; contains Pfam profile induction PF02847: MA3 domain (68417.m03552) 51 (E) Internal/External Glu NC-D-NC 253871_at At4g27440 protochlorophyllide reductase B, chloroplast/PCR B/NADPH-protochlorophyllide oxidoreductase B (PORB) identical to induction SP: P21218 protochlorophyllide reductase B, chloroplast precursor (EC 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) [Arabidopsis thaliana] (68417.m03944) 52 (E) Internal/External Glu NC-D-NC 253135_at At4g35830 aconitate hydratase, cytoplasmic/citrate hydro-lyase/aconitase (ACO) identical to SP|Q42560 Aconitate hydratase, cytoplasmic induction (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) {Arabidopsis thaliana}; contains Pfam profiles PF00330: Aconitase family (aconitate hydratase), PF00694: Aconitase C-terminal domain (68417.m05090) 53 (E) Internal/External Glu NC-D-NC 252425_at At3g47620 TCP family transcription factor, putative auxin-induced basic helix-loop-helix transcription factor - Gossypium hirsutum, induction EMBL: AF165924 (68416.m05184) 54 (E) Internal/External Glu NC-D-NC 252171_at At3g50600 induction 55 (E) Internal/External Glu NC-D-NC 251373_at At3g60530 zinc finger (GATA type) family protein identical to cDNA for GATA transcription factor 4 GI: 2959735 (68416.m06770) induction 56 (E) Internal/External Glu NC-D-NC 249266_at At5g41670 6-phosphogluconate dehydrogenase family protein contains Pfam profiles: PF00393 6-phosphogluconate dehydrogenase C- induction terminal domain, PF03446 NAD binding domain of 6-phosphogluconate (68418.m05062) 57 (E) Internal/External Glu NC-D-NC 248932_at At5g46050 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family (68418.m05663) induction 58 (E) Internal/External Glu NC-D-NC 247874_01 At5g57710 heat shock protein-related contains similarity to 101 kDa heat shock protein; HSP101 [Triticum aestivum] induction gi|11561808|gb|AAC83689 (68418.m07214) 59 (E) Internal/External Glu NC-D-NC 247791_at At5g58710 peptidyl-protyl cis-trans isomerase, putative/cyclophilin, putative/rotamase, putative (ROC7) similar to cyclophilin [Arabidopsis induction thaliana] gi|2443755|gb|AA871401 (68418.m07355) 60 (E) Internal/External Glu NC-D-NC 247611_at At5g60710 zinc finger (C3HC4-type RING finger) family protein low similarity to SP|P97280 Inter-alpha-trypsin inhibitor heavy chain H3 induction precursor {Mesocricetus auratus}; contains Pfam profiles PF00097: Zinc finger, C3HC4 type (RING finger), PF00092: von Willebrand factor type A domain (68418.m07618) 61 (E) Internal/External Glu NC-D-NC 246580_at At1g31770 ABC transporter family protein contains Pfam profile: PF00005: ABC transporter (68414.m03899) induction 62 (E) Internal/External Glu NC-D-NC 246238_at At4g36670 mannitol transporter, putative similar to mannitol transporter [Apium graveolens var. dulce] GI: 12004316; contains Nam profile induction PF00083: major facilitator superfamily protein (68417.m05203) 63 (E) Internal/External Glu D-NC-D 266892_at At2g26080 glycine dehydrogenase [decarboxylating], putative/glycine decarboxylase, putative/glycine cleavage system P-protein, putative repression strong similarity to SP|P26969 Glycine dehydrogenase (decarboxylating), mitochondrial precursor (EC 1.4.4.2) {Pisum sativum}; contains Pfam profile PF02347: Glycine cleavage system P-protein (68415.m03131) 64 (E) Internal/External Glu D-NC-D 266805_at At2g30010 expressed protein (68415.m03651) repression 65 (E) Internal/External Glu D-NC-D 264956_at At1g76990 ACT domain containing protein low similarity to uridylyltransferase SP|P56884 from Rhizobium meliloti; contains Pfam ACT domain repression PF01842 (68414.m08964) 66 (E) Internal/External Glu D-NC-D 264901_at At1g23090 sulfate transporter, putative similar to sulfate transporter [Arabidopsis thaliana] GI: 2285885; contains Pfam profiles PF00916: repression Sulfate transporter family, PF01740: STAS domain (68414.m02887) 67 (E) Internal/External Glu D-NC-D 264903_at At1g23190 phosphoglucomutase, cytoplasmic, putative/glucose phosphomutase, putative strong similarity to SP|P93805 repression Phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2) (Glucose phosphomutase 2) (PGM 2) (Zea mays); contains InterPro accession IPR006352: Phosphoglucosamine mutase (68414.m02897) 68 (E) Internal/External Glu D-NC-D 263865_at At2g36910 multidrug resistance P-glycoprotein (PGP1) identical to P-glycoprotein GI: 3849833 from [Arabidopsis thaliana]; homologous to repression mammalian mdr gene, contains ATP-binding cassette; related to multi drug resistance proteins (68415.m04527) 69 (E) Internal/External Glu D-NC-D 263777_at At2g46450 cyclic nucleotide-regulated ion channel, putative (CNGC12) similar to cyclic nucleotide and calmodulin-regulated ion channel repression (cngc3) GI: 4581201 from [Arabidopsis thaliana] (68415.m05780) 70 (E) Internal/External Glu D-NC-D 263348_at At2g05710 aconitate hydratase, cytoplasmic, putative/citrate hydro-lyase/aconitase, putative nearly identical to SP|P49608 Aconitate repression hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) {Cucurbita maxima}; contains Plant profiles PF00330: Aconitase family (aconitate hydratase), PF00694: Aconitase C-terminal domain (68415.m00611) 71 (E) Internal/External Glu D-NC-D 262793_at At1g13110 cytochrome P450 71B7 (CYP71B7) identical to (SP: Q96514) cytochrome P450 71B7 [Arabidopsis thaliana]; PF|00067 Cytochrome repression P450 family. ESTs gb|T44875, gb|T04814, gb|R65111, gb|T44310 and gb|T04541 come from this gene; identical to cDNA cytochrome P450 GI: 1523795, ATCYP71B7 (68414.m01520) 72 (E) Internal/External Glu D-NC-D 262374_s_at At1g72930 Toll-Interleukin-Resistance (TIR) domain-containing protein domain signature TIR exists, suggestive of a disease resistance repression protein. (68414.m08435) 73 (E) Internal/External Glu D-NC-D 261569_at At1g01060 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain; identical to cDNA LATE repression ELONGATED HYPOCOTYL MYB transcription factor GI: 3281645 (68414.m00006) 74 (E) Internal/External Glu D-NC-D 260955_at At1g06000 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains similarity to UDPG glucosyltransferase GB: AAB62270 repression GI: 2232354 from [Solanum berthaultii] (68414.m00628) 75 (E) Internal/External Glu D-NC-D 260913_at At1g02500 S-adenosylmethionine synthetase 1 (SAM1) identical to S-adenosylmethionine synthetase 1 (Methionine adenosyltransferase 1, repression AdoMet synthetase 1) [Arabidopsis thaliana] SWISS-PROT: P23686 (68414.m00200) 76 (E) Internal/External Glu D-NC-D 260896_at At1g29310 protein transport protein sec61, putative similar to PfSec61 [Plasmodium falciparum] GI: 3057044; contains Pfam profile PF00344: repression eubacterial secY protein (68414.m03583) 77 (E) Internal/External Glu D-NC-D 260162_at At1g79830 expressed protein weak similarity to TATA element modulatory factor (TMF) (Swiss-Prot: P82094) [Homo sapiens] (68414.m09326) repression 78 (E) Internal/External Glu D-NC-D 259958_at At1g53730 leucine-rich repeat transmembrane protein kinase, putative similar to GI: 3360289 from [Zea mays] (Plant Mol. Biol. 37 (5), 749-761 repression (1998)) (68414.m06114) 79 (E) Internal/External Glu D-NC-D 259788_at At1g29670 GDSL-motif lipase/hydrolase family protein similar to family II lipase EXL1 GI: 15054382 from [Arabidopsis thaliana]; contains Pfam repression profile: PF00657 Lipase/Acylhydrolase with GDSL-like motif (68414.m03626) 80 (E) Internal/External Glu D-NC-D 259228_at At3g07720 kelch repeat-containing protein similar to epithiospecifier (GI: 16118838) [Arabidopsis thaliana]; contains Pfam PF01344: Kelch repression motif (5 repeats) (88416.m00931) 81 (E) Internal/External Glu D-NC-D 258609_at At3g02910 expressed protein contains Pfam domain PF03674: Uncharacterised protein family (UPF0131) (68416.m00286) repression 82 (E) Internal/External Glu D-NC-D 258338_at At3g16150 L-asparaginase, putative/L-asparagine amidohydrolase, putative similar to Swiss-Prot: P30384 L-asparaginase (EC 3.5.1.1) (L- repression asparagine amidohydrolase) [Lupinus angustifolius] (88416.m02039) 83 (E) Internal/External Glu D-NC-D 257217_at At3g14940 phosphoenolpyruvate carboxylase, putative/PEP carboxylase, putative strong similarity to SP|P29198 Phosphoenolpyruvate repression carboxylase (EC 4.1.1.31) (PEPCASE) (Solanum tuberosum); contains Pfam profile PF00311: phosphoenolpyruvate carboxylase (68416.m01890) 84 (E) Internal/External Glu D-NC-D 257008_at At3g14210 myrosinase-associated protein, putative similar to GB: CAA71238 from [Brassica napus]; contains Pfam profile: PF00857 repression Lipase/Acylhydrolase with GDSL-like motif (68416.m01796) 85 (E) Internal/External Glu D-NC-D 256228_at At1g56190 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) repression 86 (E) Internal/External Glu D-NC-D 255957_at At1g22160 {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase (68414.m06458) repression senescence-associated protein-related similar to senescence-associated protein SAG102 (GI: 22331931) [Arabidopsis thaliana] (68414.m02770) 87 (E) Internal/External Glu D-NC-D 255615_at At4g01290 expressed protein (68417.m00170) repression 88 (E) Internal/External Glu D-NC-D 255421_at At4g03260 leucine-rich repeat family protein contains leucine rich repeat (LRR) domains. Pfam: PF00560 (68417.m00445) repression 89 (E) Internal/External Glu D-NC-D 254723_at At4g13510 ammonium transporter 1, member 1 (AMT1.1) identical to SP|P54144 High affinity ammonium transporter (AtAMT1; 1) {Arabidopsis repression thaliana} (68417.m02107) 90 (E) Internal/External Glu D-NC-D 254705_at At4g17870 expressed protein (68417.m02664) repression 91 (E) Internal/External Glu D-NC-D 254275_at At4g22670 tetratricopeptide repeat (TPR)-containing protein similar to Hsc70-interacting protein (Hip) from (Homo sapiens) SP|P50502, {Rattus repression norvegicus) SP|P50503; contains Pfam profile PF00515: tetratricopeptide repeat (TPR) domain (68417.m03272) 92 (E) Internal/External Glu D-NC-D 254174_at At4g24120 transporter, putative similar to iron-phytosiderophore transporter protein yellow stripe 1 [Zea mays] GI: 10770865; contains Pfam repression profile PF03169: OPT oligopeptide transporter protein (68417.m03462) 93 (E) Internal/External Glu D-NC-D 253521_at At4g31300 20S proteasome beta subunit A (PBA1)(PRCD) identical to cDNA proteasome subunit prod GI: 2511593 (68417.m04441) repression 94 (E) Internal/External Glu D-NC-D 253387_at At4g33010 glycine dehydrogenase [decarboxylating], putative/glycine decarboxylase, putative/glycine cleavage system P-protein, putative repression strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein (68417.m04695) 95 (E) Internal/External Glu D-NC-D 253205_at At4g34490 cyclase-associated protein (cap1) identical to cyclase-associated protein (cap1) GI: 3169136 from [Arabidopsis thaliana] repression (68417.m04903) 96 (E) Internal/External Glu D-NC-D 252827_at At4g39950 cytochrome P450 79B2, putative (CYP79B2) identical to cytochrome P450 (79B2) SP: O81346 from [Arabidopsis thaliana] repression (68417.m05657) 97 (E) Internal/External Glu D-NC-D 251562_at At3g57890 tubulin-specific chaperone C-related contains weak similarity to Tubulin-specific chaperone C (Tubulin-folding cofactor C) (CFC) repression (Swiss-Prot: Q15814) [Homo sapiens] (68416.m06453) 98 (E) Internal/External Glu D-NC-D 251581_at At3g58560 endonuclease/exonuclease/phosphatase family protein similar to SP|P31384 Glucose-repressible alcohol dehydrogenase repression transcriptional effector (Carbon catabolite repressor protein 4) {Saccharomyces cerevisiae}; contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase family (68416.m06527) 99 (E) Internal/External Glu D-NC-D 251524_at At3g58990 aconitase C-terminal domain-containing protein contains Pfam profile PF00694: Aconitase C-terminal domain (68416.m06575) repression 100 (E) Internal/External Glu D-NC-D 251197_at At3g62960 glutaredoxin family protein contains INTERPRO Domain IPR002109, Glutaredoxin (thioltransferase) (68416.m07073) repression 101 (E) Internal/External Glu D-NC-D 250337_at At5g11790 Ndr family protein similar to SP|O23969 Pollen specific protein SF21 (Halianthus annuus); contains Pfam profile PF03096: Ndr repression family (68418.m01376) 102 (E) Internal/External Glu D-NC-D 250339_at At5g11670 matate oxidoreductase, putative similar to NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME) (SP|P12628) {Phaseolus repression vulgaris) (68418.m01364) 103 (E) Internal/External Glu D-NC-D 250253_at At5g13840 lecithin:cholesterol acyltransferase family protein/LACT family protein similar to SP|P40345 Phospholipid:diacylglycerol repression acyltransferase (EC 2.3.1.158) (PDAT) (Saccharomyces cerevisiae); contains Pfam profile PF02450: Lecithin:cholesterol acyltransferase (phosphatidylcholine-sterol acyltransferase) (68418.m01582) 104 (E) Internal/External Glu D-NC-D 249035_at At5g44190 myb family transcription factor (GLK2) contains Pfam profile: PF00249 myb-like DNA-binding domain (68418.m05407) repression 105 (E) Internal/External Glu D-NC-D 248727_at At5g47990 cytochrome P450 family protein similar to Cytochrome P450 93A3 (P450 CP5) (SP: O81973) [Glycine max]; (68418.m05929) repression 106 (E) Internal/External Glu D-NC-D 248729_at At5g48010 pentacyclic triterpene synthase, putative similar to pentacyclic triterpene synthase [gi: 6650207] [PMID: 11247608] Contains Pfam repression domain PF00432: Prenyltransferase and squalene oxidase repeat (68418.m05933) 107 (E) Internal/External Glu D-NC-D 245736_at At1g73330 protease inhibitor, putative (DR4) identical to Dr4 GI: 489114 from [Arabidopsis thaliana]; contains Pfam profile PF00197: Trypsin repression and protease inhibitor (68414.m08488) 108 (E) Internal/External Glu D-NC-D 245555_at At4g15390 transferase family protein similar to alcohol acyltransferase [Fragaria x ananassa][GI: 10121328][PMID: 10810141]. repression deacetylvindoline 4-O-acetyltransferase [Catharanthus roseus][GI: 4091808][PMID: 9681034] (68417.m02351) 109 (E) Internal/External Glu D-NC-D 245021_at psbJ PSII component repression 110 (E) Internal/External Glu NC-I-NC 267381_at At2g26190 calmodulin-binding family protein contains Pfam profile PF00612: IQ calmodulin-binding motif (68415.m03145) Repression 111 (E) Internal/External Glu NC-I-NC 267005_at At2g34460 flavin reductase-related low similarity to SP|P30043 Flavin reductase {Homo sapiens} (68415.m04229) Repression 112 (E) Internal/External Glu NC-I-NC 265472_at At2g15580 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Repression (68415.m01784) 113 (E) Internal/External Glu NC-I-NC 265194_at At1g05010 1-aminocyclopropane-1-carboxylate oxidase/ACC oxidase/ethylene-forming enzyme (ACO) (EAT1) Identical to 1- Repression aminocyclopropane-1-carboxylate oxidase (ACC oxidase) gb|X66719 (EAT1). ESTs gb|T43073, gb|T5714, gb|R90435, gb|R44023, gb|AA597926, gb|AI099676, gb|AA650810 and gb|29725 come from this gene (68414.m00502) 114 (E) Internal/External Glu NC-I-NC 264435_at At1g10360 glutathione S-transferase, putative similar to glutathione S-transferase (sp|Q03666|GTX4_TOBAC); similar to EST gb|H36275 Repression gb: AB039930. (68414.m01167) 115 (E) Internal/External Glu NC-I-NC 264107_s_at At2g13790 leucine-rich repeat family protein/protein kinase family protein (68415.m01522) Repression 116 (E) Internal/External Glu NC-I-NC 263582_at At2g17120 peptidoglycan-binding LysM domain-containing protein contains Pfam profile P101478: LysM domain; supporting cDNA Repression gi|16226688|gb|AF428464.1|AF428484 (68415.m01976) 117 (E) Internal/External Glu NC-I-NC 263534_at At2g24940 cytochrome b5 domain-containing protein similar to SP|P70580 Membrane associated progesterone receptor component 1 (Rattus Repression norvegicus) : contains Pfam profile PF00173: Heme/Steroid binding domain (68415.m02982) 118 (E) Internal/External Glu NC-I-NC 263150_at At1g54050 17.4 kDa class III heat shock protein (HSP17.4-CIII) contains Pfam profile: PF00011 Hsp20/alpha crystallin family; identified as Repression class CIII in Scharf, K. D., et al, Cell Stress & Chaperones (2001) 6: 225-237. (68414.m06159) 119 (E) Internal/External Glu NC-I-NC 262831_at At1g14730 cytochrome B561 family similar to cytochrome GB: AAD11424 GI: 4206110 [Mesembryanthemum crystallinum]; contains Pfam Repression domain, PF03188: Cytochrome b561 (68414.m01761) 120 (E) Internal/External Glu NC-I-NC 262341_at At1g64230 ubiquitin-conjugating enzyme, putative identical or nearly so to Ubiquitin-conjugating enzymes SP|P35132, SP|P35131, SP|P35133 Repression from {Arabidopsis thaliana}; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme (68414.m07276) 121 (E) Internal/External Glu NC-I-NC 262235_at At1g48350 ribosomal protein L18 family protein similar to ribosomal protein L18 GI: 3980238 from [Thermotoga maritima] (68414.m05401) Repression 122 (E) Internal/External Glu NC-I-NC 262092_at At1g56150 auxin-responsive family protein similar to SP: P33082 Auxin-induced protein X15. [Soybean] (Glycine max) (68414.m06450) Repression 123 (E) Internal/External Glu NC-I-NC 261564_at At1g01720 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC domain Repression protein NAM GB: AAD17313 GI: 4325282 from [Arabidopsis thaliana] (68414.m00090) 124 (E) Internal/External Glu NC-I-NC 261484_at At1g14400 ubiquitin-conjugating enzyme 1 (UBC1) E2; identical to gi: 431259, SP: P25865 (68414.m01707) Repression 125 (E) Internal/External Glu NC-I-NC 261445_at At1g28380 expressed protein (68414.m03487) Repression 126 (E) Internal/External Glu NC-I-NC 261143_at At1g19770 purine permease-related low similarity to purine permease [Arabidopsis thaliana] GI: 7620007; contains Pfam profile PF03151: Repression Domain of unknown function, DUF250 (68414.m02471) 127 (E) Internal/External Glu NC-I-NC 261081_at At1g07350 transformer serine/arginine-rich ribonucleoprotein, putative similar to GB: Y09506 from [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), Repression 261-269 (1997)) (68414.m00783) 128 (E) Internal/External Glu NC-I-NC 260831_at At1g06830 glutaredoxin family protein contains INTERPRO Domain IPR002109, Glutaredoxin (thioltransferase) (68414.m00728) Repression 129 (E) Internal/External Glu NC-I-NC 260481_at At1g10960 ferredoxin, chloroplast, putative strong similarity to FERREDOXIN PRECURSOR GB: P16972 [SP|P16972] from [Arabidopsis Repression thaliana] (68414.m01258) 130 (E) Internal/External Glu NC-I-NC 260180_at At1g70660 ubiquitin-conjugating enzyme family protein similar to TRAF6-regulated IKK activator 1 beta Uev1A [Homo sapiens] GI: 10880969; Repression contains Pfam profile PF00179: Ubiquitin-conjugating enzyme (68414.m08146) 131 (E) Internal/External Glu NC-I-NC 259518_at At1g20510 4-coumarate-CoA ligase family protein/4-coumaroyl-CoA synthase family protein similar to SP|P14912 and SP|P14913 from Repression Petroselinum crispum: contains Pfam AMP-binding enzyme domain PF00501 (68414.m02555) 132 (E) Internal/External Glu NC-I-NC 259312_at At3g05200 zinc finger (C3HC4-type RING finger) family protein (ATL6) contains Pfam profile: PF00097: Zinc finger, C3HC4 type (RING finger) Repression (68416.m00567) 133 (E) Internal/External Glu NC-I-NC 259249_at At3g07790 DGCR14-related similar to DGCR14 protein (DiGeorge syndrome critical region 14) (ES2 protein) (Swiss-Prot: Q96DF8) [Homo Repression sapiens] (68416.m00951) 134 (E) Internal/External Glu NC-I-NC 258897_at At3g05730 expressed protein (68416.m00642) Repression 135 (E) Internal/External Glu NC-I-NC 258787_al At3g11840 U-box domain-containing protein low similarity to immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum] Repression GI: 14582200; contains Pfam profile PF04564: U-box domain (68416.m01451) 136 (E) Internal/External Glu NC-I-NC 258452_at At3g22370 alternative oxidase 1a, mitochondrial (AOX1A) identical to GB: Q39219 [SP|Q39219] from [Arabidopsis thaliana] (68416.m02824) Repression 137 (E) Internal/External Glu NC-I-NC 257700_at At3g12740 LEM3 (ligand-effect modulator 3) family protein/CDC50 family protein Similar to GI: 4585976; GI: 4966357; GI: 4835763; Repression GI: 9757735 from [Arabidopsis thaliana] (68416.m01591) 138 (E) Internal/External Glu NC-I-NC 256663_at At3g12050 Aha1 domain-containing protein contains Pfam PF05146: Aha1 domain; similar to Protein C14orf3 (HSPC322) (Swiss- Repression Prot: O95433) [Homo sapiens] (68416.m01496) 139 (E) Internal/External Glu NC-I-NC 256178_s_at At1g51780 IAA-amino acid hydrolase 5/auxin conjugate hydrolase (ILL5) identical to auxin conjugate hydrolase ILL5 [Arabidopsis thaliana] Repression gi|5725649|gb|AAD48152; contains nonconsensus AT acceptor splice site at exon3 (68414.m05835) 140 (E) Internal/External Glu NC-I-NC 256046_at At1g07135 glycine-rich protein (68414.m00759) Repression 141 (E) Internal/External Glu NC-I-NC 254861_at At4g12040 zinc finger (AN1-like) family protein contains Pfam domains, PF01428: AN1-like Zinc finger and PF01754: A20-like zinc finger Repression (68417.m01915) 142 (E) Internal/External Glu NC-I-NC 254331_s_at At4g22710 cytochrome P450 family protein contains Pfam profile: PF00067 cytochrome p450 (68417.m03276) Repression 143 (E) Internal/External Glu NC-I-NC 254231_at At4g23810 WRKY family transcription factor AR411 - Arabidopsis thaliana (thale cress), PID: g1669603 (68417.m03423) Repression 144 (E) Internal/External Glu NC-I-NC 254120_at At4g24570 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein (68417.m03521) Repression 145 (E) Internal/External Glu NC-I-NC 253664_at At4g30210 NADPH-cytochrome p450 reductase, putative/NADPH-ferrihemoprotein reductase, putative similar to NADPH-cytochrome P450 Repression oxydoreductase from (Populus balsamifera subsp. trichocarpa x Populus deltoides] GI: 13183564, GI: 13183566 (68417.m04296) 146 (E) Internal/External Glu NC-I-NC 253482_at At4g31985 60S ribosomal protein L39 (RPL39C) (68417.m04549) Repression 147 (E) Internal/External Glu NC-I-NC 253273_at At4g34180 cyclase family protein contains Pfam profile: PF04199 putative cyclase (68417.m04850) Repression 148 (E) Internal/External Glu NC-I-NC 252422_at At3g47550 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) Repression (68416.m05171) 149 (E) Internal/External Glu NC-I-NC 252053_at At3g52400 syntaxin, putative (SYP122) similar to SP|Q9ZSD4 Syntaxin 121 (AtSYP121) (Syntaxin-related protein At-Syr1) {Arabidopsis Repression thaliana} (68416.m05763) 150 (E) Internal/External Glu NC-I-NC 251727_at At3g56290 expressed protein (68416.m06257) Repression 151 (E) Internal/External Glu NC-I-NC 249983_at At5g18470 curculin-like (mannose-binding) lectin family protein contains Pfam profile: PF01453 lectin (probable mannose binding) Repression (68418.m02175) 152 (E) Internal/External Glu NC-I-NC 249325_at At5g40850 urophorphyrin III methylase (UPM1) identical to urophorphyrin III methylase (GI: 1146165) [Arabidopsis thaliana]; similar to s- Repression adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase (GI: 1490606) [Arabidopsis thaliana]; similar to Diphthine synthase (Diphtamide biosynthesis methyltransferase) (DPH5) (SP: P32469) [Saccharomyces cerevisiae]; contains Pfam PF00590: Tetrapyrrole (Corrin/Porphyrin) Methylases domain; contains TIGRFAM PF00590: Tetrapyrrole (Corrin/Porphyrin) Methylases (68418.m04960) 153 (E) Internal/External Glu NC-I-NC 249122_at At5g43850 acireductone dioxygenase (ARD/ARD′) family protein similar to iron-deficiency induced gene [Hordeum vulgare] GI: 14522834, SIPL Repression [Homo sapiens] GI: 16551383: contains Pfam profile PF03079: ARD/ARD′ family (68418.m05361) 154 (E) Internal/External Glu NC-I-NC 249078_at At5g44070 phytochelatin synthase 1 (PCS1) identical to phytochelatin synthase [Arabidopsis thaliana] gi|18254401|gb|AAL66747; identical to Repression cDNA phytochelatin synthase, GI: 18254400 (68418.m05392) 155 (E) Internal/External Glu NC-I-NC 248964_at At5g45340 cytochrome P450 family protein similar to SP|Q42569|C901_ARATH Cytochrome P450 90A1 (SP: Q42569) [Arabidopsis thaliana]; Repression contains Pfam profile: PF00067: Cytochrome P450 (68418.m05585) 156 (E) Internal/External Glu NC-I-NC 248799_at At5g47230 ethylene-responsive element-binding factor 5 (ERF5) identical to SP|O80341 Ethylene responsive element binding factor 5 Repression (AtERF5) [Arabidopsis thaliana] (68418.m05824) 157 (E) Internal/External Glu NC-I-NC 248665_at At5g48855 zinc finger (C3HC4-type RING finger) family protein contains Pram profile: PF00097 zinc finger, C3HC4 type (RING finger) Repression (68418.m06017) 158 (E) Internal/External Glu NC-I-NC 248327_at At5g52750 heavy-metal-associated domain-containing protein Pfam profile PF00403: Heavy-metal-associated domain (68418.m06547) Repression 159 (E) Internal/External Glu NC-I-NC 247693_at At5g59730 exocyst subunit EXO70 family protein leucine zipper-containing protein, Lycopersicon esculentum, PIR: S21495 contains Pfam Repression domain PF03081: Exo70 exocyst complex subunit; (68418.m07487) 160 (E) Internal/External Glu NC-I-NC 247320_at At5g64040 photosystem I reaction center subunit PSI-N, chloroplast, putative/PSI-N, putative (PSAN) SP: P49107; Plant Physicol. 109 (3), Repression 1126 (1995); similar to SP|P31093 Photosystem I reaction centre subunit N, chloroplast precursor (PSI-N) {Hordeum vulgare} (68418.m08040) 161 (E) Internal/External Glu NC-I-NC 246870_at At5g26030 ferrochelatase I identical to Swiss-Prot: P42043 ferrochelatase I, chloroplast/mitochondrial precursor (EC 4.99.1.1) (Protoheme ferro Repression lyase) (Heme synthetase) [Arabidopsis thaliana] (68418.m03097) 162 (E) Internal/External Glu NC-I-NC 245768_at At1g33590 disease resistance protein-related/LRR protein-related contains leucine rich-repeat domains Pfam: PF00580. Repression INTERPRO: IPR001611; similar to Hcr2-5D [Lycopersicon esculentum] gi|3894393|gb|AAC78596 (68414.m04158) 163 (E) Internal/External Glu NC-I-NC 245247_at At4g17230 scarecrow-like transcription factor 13 (SCLL-13) (68417.m02591) Repression 164 (E) Internal/External Glu NC-I-NC 245114_at At2g41630 transcription initiation factor IIB-1/general transcription factor TFIIB-1 (TFIIB1) identical to transcription initiation factor IIB-1 Repression (TFIIB1) SP: P48512 from [Arabidopsis thaliana] (68415.m05144) 1 (F) Internal Glu induction/ I-NC-D 254549_at At4g19880 glutathione S-transferase-related contains weak hit to Pfam profile PF00043: Glutathione S-transferase, C-terminal domain External Glu repre

(68417.m02914) 2 (F) Internal Glu repression/ D-NC-I 266992_at At2g39200 seven transmembrane MLO family protein/MLO-like protein 12 (MLO12) identical to SP|O80961 MLO-like protein 12 (AtMlo12) External Glu ind

{Arabidopsis thaliana}, membrane protein Mlo12 [Arabidopsis thaliana] gi|14091594|gb|AAK53805; similar to MLO protein SWISS- PROT: P93766, NCBI_gi: 1877221 [Hordeum vulgare][Barley] {68415.m04815} 3 (F) Internal Glu repression/ D-NC-I 253277_at At4g34230 cinnamyl-alcohol dehydrogenase, putative similar to cinnamyl alcohol dehydrogenase, Nicotiana tabacum [SP|P30359], Populus External Glu ind

deltoides, PATCHX: G288753 (68417.m04864) 1 Not regulated NC-NC-NC 267630_at At2g42130 expressed protein contains weak hit to Pfam PF04755: PAP_fibrillin (68415.m05211) 2 Not regulated NC-NC-NC 267638_at At2g42210 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein weak similarity to SP|P25710 NADH- ubiquinone oxidoreductase 21.3 kDa subunit (EC 1.6.5.3) (EC 1.6.99.3) (Neurospora crassa), SP|Q12328 Mitochondrial import inner membrane translocase subunit TIM22 {Saccharomyces cerevisiae}; contains Pfam profile PF02466: Mitochondrial import inner membrane translocase subunit Tim17 (68415.m05224) 3 Not regulated NC-NC-NC 267640_at At2g32950 COP1 regulatory protein photomorphogenesis repressor, identical to COP1 regulatory protein/FUSCA protein FUS1 GI: 402685 SP: P43254 (68415.m04039) 4 Not regulated NC-NC-NC 267596_s_at At2g33050 leucine-rich repeat family protein contains leucine rich-repeat domains Pfam: PF00560, INTERPR: IPR001611; similar to Hcr2-0B [Lycopersicon esculentum] gi|3894387|gb|AAC78593 (68415.m04053) 5 Not regulated NC-NC-NC 267601_at At2g32980 expressed protein (68415.m04042) 6 Not regulated NC-NC-NC 267607_s_at At2g26740 epoxide hydrolase, soluble (sEH) identical to ATsEH [Arabidopsis thaliana] GI: 1109600 (68415.m03207) 7 Not regulated NC-NC-NC 287608_at At2g26770 plectin-related contains weak similarity to Swiss-Prot: Q9JI55 plectin 1 (PLTN, PCN, 300-kDa intermediate filament-associated protein, IFAP300)[Cricetulus griseus] (68415.m03210) 8 Not regulated NC-NC-NC 267609_at At2g26780 expressed protein contains Pfam profile TBP (TATA-binding protein) -interacting protein 120 (TIP120); contains TIGRFAM profile TIGR01612: reticulocyte binding protein (68415.m03212) 9 Not regulated NC-NC-NC 267610_at At2g26650 potassium channel protein 1 (AKT1) identical to AKT1 [Arabidopsis thaliana] gi|563112|gb|AAA96810; member of the 1 pore, 6 transmembrane (1P/6TM-Shaker-type) K+ channel family, PMID: 11500563 (68415.m03197) 10 Not regulated NC-NC-NC 267617_at At2g26670 heme oxygenase 1 (HO1) (HY1) identical to plastid heme oxygenase (HY1) [Arabidopsis thaliana] GI: 4877362, heme oxygenase 1 [Arabidopsis thaliana] GI: 4530591 GB: AF132475; annotation updated per Seth J. Davis at University of Wisconsin-Madison (68415.m03199) 11 Not regulated NC-NC-NC 267619_at At2g26730 leucine-rich repeat transmembrane protein kinase, putative (68415.m03206) 12 Not regulated NC-NC-NC 267624_at At2g39660 protein kinase, putative similar to protein kinase gi|166809|gb|AAA18853 (68415.m04864) 13 Not regulated NC-NC-NC 267591_at At2g39705 expressed protein (68415.m04871) 14 Not regulated NC-NC-NC 267562_at At2g39670 radical SAM domain-containing protein similar to hypothetical protein PIR/S76698/S76698 contains Pfam profile PF04055: radical SAM domain protein (68415.m04866) 15 Not regulated NC-NC-NC 267577_at At2g30710 RabGAP/TBC domain-containing protein similar to SP|Q08484 GTPase-activating protein GYP1 {Saccharomyces cerevisiae}; contains Pfam profile PF00566: TBC domain (68415.m03746) 16 Not regulated NC-NC-NC 267580_at At2g41990 expressed protein (68415.m05194) 17 Not regulated NC-NC-NC 267583_at At2g41960 expressed protein (68415.m05191) 18 Not regulated NC-NC-NC 267586_at At2g41950 expressed protein (68415.m05190) 19 Not regulated NC-NC-NC 267533_at At2g42070 MutT/nudix family protein similar to SP|Q58549 ADP-ribose pyrophosphatase (EC 3.6.1.13) {Methanococcus jannaschi}; contains Pfam profile PF00293: NUDIX domain (68415.m05202) 20 Not regulated NC-NC-NC 267535_at At2g41940 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type (68415.m05188) 21 Not regulated NC-NC-NC 267539_at At2g42030 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68415.m05198) 22 Not regulated NC-NC-NC 267544_at At2g32720 cytochrome b5, putative similar to Cytochrome B5 SP: P49098 from [Nicotiana tabacum] (68415.m04004) 23 Not regulated NC-NC-NC 267553_s_at At2g32650 expressed protein contains Pfam PF05899: Protein of unknown function (DUF861) (68415.m03988) 24 Not regulated NC-NC-NC 267561_at At2g45590 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68415.m05669) 25 Not regulated NC-NC-NC 267498_at At2g45720 armadillo/beta-catenin repeat family protein contains Pfam profile PF00514: Armadillo/beta-catenin-like repeat (68415.m05686) 26 Not regulated NC-NC-NC 267504_at At2g45530 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68415.m05662) 27 Not regulated NC-NC-NC 267506_at At2g45520 expressed protein (68415.m05661) 28 Not regulated NC-NC-NC 267507_at At2g45710 40S ribosomal protein S27 (RPS27A) (68415.m05685) 29 Not regulated NC-NC-NC 267510_at At2g45640 sin3 associated polypeptide p18 family protein similar to Sin3 associated polypeptide p18 (2HOR0202) (Swiss-Prot: O00422) [Homo sapiens] (68415.m05675) 30 Not regulated NC-NC-NC 267511_at At2g45670 calcineurin B subunit-related contains Pfam PF00036: EF hand domain and Prosite PS00018: EF-hand calcium-binding domain: contains Pfam profile PF01553: Acyltransferase; weak similarity to Calcineurin B subunit isoform 2 (Protein phosphatase 2B regulatory subunit 2) (Protein phosphatase 3 regulatory subunit B alpha isoform 2) (Swiss-Prot: Q63811) [Mus musculus] (68415.m05678) 31 Not regulated NC-NC-NC 267513_at At2g45620 nucleotidyltransferase family protein low similarity to SP|O13833| Caffeine-induced death protein 1 {Schizosaccharomyces pombe}; contains Pfam profiles PF03828: PAP/25A associated domain, PF01909: Nudeotidyltransferase domain (68415.m05672) 32 Not regulated NC-NC-NC 267515_at At2g45680 TCP family transcription factor, putative similar to PCF2 (GI: 2580440) [Oryza sativa] (68415.m05680) 33 Not regulated NC-NC-NC 267517_at At2g30510 34 Not regulated NC-NC-NC 267520_at At2g30460 expressed protein contains 4 predicted transmembrane domains; similar to c_pp004044298r (GI: 14597790) [Physcornitrella patens] (68415.m03710) 35 Not regulated NC-NC-NC 267526_at At2g30570 photosystem II reaction center W (PsbW) protein-related similar to photosystem II reaction center W protein SP: Q41387 from [Spinacia oleracea] (68415.m03723) 36 Not regulated NC-NC-NC 267472_at At2g02850 plastocyanin-like domain-containing protein/plantacyanin, putative similar to plantacyanin GI: 3395754 from [Spinacia oleracea] (68415.m00234) 37 Not regulated NC-NC-NC 267486_at At2g02800 protein kinase (APK2b) identical to protein kinase APK2b [Arabidopsis thaliana] gi|2852449|dbj|BAA24695 (68415.m00224) 38 Not regulated NC-NC-NC 267490_at At2g19130 S-locus lectin protein kinase family protein contains Pfam domains PF00954: S-locus glycoprotein family, PF00069: Protein kinase domain and PF01453: Lectin (probable mannose binding) (68415.m02233) 39 Not regulated NC-NC-NC 267442_at At2g19080 metaxin-related contains 1 transmembrane domain: similar to Metaxin 1 (component of a preprotein import complex) (Swiss- Prot: P47802) [Mus musculus]; (68415.m02228) 40 Not regulated NC-NC-NC 267448_s_at At2g33840 tRNA synthetase class I (W and Y) family protein similar to SP|P54577 Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosyl-tRNA ligase) (TyrRS) {Homo sapiens}; contains Pfam profile PF00579: tRNA synthetases class I (W and Y) (68415.m04153) 41 Not regulated NC-NC-NC 267448_at At2g33700 protein phosphatase 2C, putative/PP2C, putative contains PF00481: Protein phosphatase 2C domain: similar to protein phosphatase-2C (PP2C) (GI: 3643085) [Mesembryanthemum crystallinum] (68415.m04130) 42 Not regulated NC-NC-NC 267459_at At2g33850 expressed protein contains 1 transmembrane domain; similar to Protein E6 (Swiss-Prot: Q01197) [Gossypium hirsutum] (68415.m04155) 43 Not regulated NC-NC-NC 267463_at At2g33845 DNA-binding protein-related contains weak similarity to G-quartet DNA binding protein 3 [tetrahymena thermophila] gi|4583503|gb|AAD25098 (68415.m04154) 44 Not regulated NC-NC-NC 267435_at At2g33800 ribosomal protein S5 family protein contains Pfam profiles PF03719: Ribosomal protein S5, C-terminal domain, PF00333: Ribosomal protein S5, N-terminal domain (68415.m04147) 45 Not regulated NC-NC-NC 267405_at At2g33740 copper-binding protein (CUTA) identical to copper-binding protein CUTA GI: 12963361 from [Arabidopsis thaliana], contains Pfam profile: PF03091 CutA1 divalent ion tolerance protein (68415.m04136) 46 Not regulated NC-NC-NC 287413_at At2g34960 amino acid permease family protein similar to cationic amino acid transporter 3 [Rattus norvegicus] GI: 2116552; contains Pfam profile PF00324: Amino acid permease (68415.m04290) 47 Not regulated NC-NC-NC 267419_at At2g35010 thioredoxin family protein similar to SP|Q42443 Thioredoxin H-type (TRX-H) {Oryza sativa}; contains Pfam profile: PF00085 Thioredoxin (68415.m04295) 48 Not regulated NC-NC-NC 287421_at At2g35040 AICARFT/IMPCHase bienzyme family protein similar to SP|P12048 Bifunctional purine biosynthesis protein purH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) (AICAR transformylase); IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142: MGS-like domain (68415.m04299) 49 Not regulated NC-NC-NC 267423_at At2g35060 potassium transporter family protein similar to HAK2 [Hordeum vulgare] GI: 7108599, potassium transporter HAK2p [Mesemdyanthemum crystallinum] gi|14091471|gb|AAK53759; KUP/HAK/KT Transporter family member, PMID: 11500563; contains Pfam profile PF02705: K+ potassium transporter (68415.m04301) 50 Not regulated NC-NC-NC 267430_at At2g34860 chaperone protein dnaJ-related contains Pfam PF00684: DnaJ central domain (4 repeats); similar to Chaperone protein dnaJ (Heat shock(protein 40) (SP: Q9UXR9) {Methanosarcina thermophila} (68415.m04280) 51 Not regulated NC-NC-NC 287432_at At2g35020 UTP-glucose-1-phosphate uridylyltransferase family protein similar to SP|Q16222 UDP-N-acetylhexosamine pyrophosphorytase (Antigen X) {Homo sapiens}; contains Pfam profile PF01704: UTP-glucose-1-phosphate uridylyttransferase (68415.m04296) 52 Not regulated NC-NC-NC 267401_at At2g26210 ankyrin repeat family protein contains ankyrin repeats, Pfam: PF00023 (68415.m03147) 53 Not regulated NC-NC-NC 267374_at At2g26230 uricase/urate oxidase/nodulin 35, putative identical to uricase SP: O04420 from [Arabidopsis thaliana] (68415.m03149) 54 Not regulated NC-NC-NC 267375_at At2g28300 guanine nucleotide binding protein (G-protein) alpha-1 subunit/GP-alpha-1 (GPA1) identical to SP|P18064 Guanine nucleotide- binding protein alpha-1 subunit (GP-alpha-1) {Arabidopsis thaliana} (68415.m03156) 55 Not regulated NC-NC-NC 267377_at At2g26250 beta-katoacyl-CoA synthase family (FIDDLEHEAD) (FDH) identical to GB: AJ010713 (fiddlehead protein) (68415.m03151) 56 Not regulated NC-NC-NC 287385_at At2g44380 DC1 domain-containing protein highly similar to GP|2435515|AF024504; contains Pfam profile PF03107: DC1 domain (68415.m05520) 57 Not regulated NC-NC-NC 267393_at At2g44500 expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; previously annotated as ‘axi 1 protein from Nicotiana tabacum-related’ based on similarity to axi 1 protein (GB: X80301) (GI: 559920) from [Nicotiana tabacum], which, due to scienitific fraud was retracted. Retraction in: Schell J. EMBO J 1999 May 17; 18(10): 2908. PMID: 10400497. (68415.m05532) 58 Not regulated NC-NC-NC 267385_at At2g44530 ribose-phosphate pyrophosphokinase, putative/phosphoribosyl diphosphate synthetase, putative very strong similarity to phosphoribosyl pyrophosphate synthase [Spinacia oleracea] GI: 4902849; contains Pfam profile PF00156: Phosphoribosyl transferase domain (88415.m05539) 59 Not regulated NC-NC-NC 267342_at At2g44520 UbiA prenyltransferase family protein similar to SP|Q12887 Protoheme IX farnesyltransferase, mitochondrial precursor (EC 2.5.1.—) (Heme O synthase) {Homo sapiens}, SP|P21592 COX10 {Saccharomyces cerevisiae} (68415.m05535) 60 Not regulated NC-NC-NC 267346_at At2g39940 coronatine-insensitive 1/COI1 (FBL2) E3 ubiquitin ligase SCF complex F-box subunit; identical to LRR-containing F-box protein GI: 3158394 from [Arabidopsis thaliana] (68415.m04908) 61 Not regulated NC-NC-NC 267348_at At2g39960 microsomal signal peptidase 25 kDa subunit, putative (SPC25) identical to Probable microsomal signal peptidase 25 kDa subunit (EC 3.4.—.—) (SPase 25 kDa subunit) (SPC25) (Swiss-Prot: P58684) [Arabidopsis thaliana]; contains non-consensus AT-AC splice sites; contains 1 transmembrane domain; (68415.m04910) 62 Not regulated NC-NC-NC 267358_at At2g39890 proline transporter 1 (ProT1) identical to protine transporter 1 GI: 1769901 from [Arabidopsis thaliana] (68415.m04903) 63 Not regulated NC-NC-NC 287360_at At2g40060 expressed protein (68415.m04922) 64 Not regulated NC-NC-NC 267363_at At2g39970 peroxisomal membrane protein (PMP36) identical to 36 kDa-peroxisornal membrane protein (PMP36) GI: 15146342 from [Arabidopsis thaliana] (68415.m04911) 65 Not regulated NC-NC-NC 267338_at At2g39990 eukaryotic translation initiation factor 3 subunit 5/eIF-3 epsilon/eIF3f (TIF3F1) identical to SP|O04202 Eukaryotic translation initiation factor 3 subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f) {Arabidopsis thaliana}: contains Pfam profile PF01398: Mov34/MPN/PAD-1 family (68415.m04914) 66 Not regulated NC-NC-NC 267312_at At2g34750 RNA polymerase I specific transcription initiation factor RRN3 family protein contains Pfam PF05327: RNA polymerase I specific transcription initiation factor RRN3; similar to RRN3 (GI: 7670100) [Homo sapiens] similar to RNA polymerase I specific transcription initiation factor RRN3 (Swiss-Prot: P36070) [Saccharomyces cerevisiae] (68415.m04267) 67 Not regulated NC-NC-NC 267315_at At2g34720 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein contains Pfam profile: PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B (68415.m04284) 68 Not regulated NC-NC-NC 267323_at At2g19340 membrane protein, putative contains 3 transmembrane domains; (68415.m06034) 69 Not regulated NC-NC-NC 267330_at At2g19270 expressed protein (68415.m02249) 70 Not regulated NC-NC-NC 287309_at At2g19385 expressed protein weak similarity to Cell growth regulating nucleolar protein (Swiss-Prot: Q08288) [Mus musculus] (68415.m02261) 71 Not regulated NC-NC-NC 267278_at At2g19350 expressed protein (68415.m02258) 72 Not regulated NC-NC-NC 287280_at At2g19450 diacylglycerol O-acyltransferase/acyl CoA: diacylglycerol acyltransferase (DGAT) identical to gi: 5050913, gi: 6625553 (68415.m02272) 73 Not regulated NC-NC-NC 267290_at At2g23750 SET domain-containing protein similar to SP|O60018 Cryptic loci regulator 4 (Histone-lysine N-methyltransferase) {Schizosaccharomyces pombe}; contains Pfam profile PF00856: SET domain (68415.m02835) 74 Not regulated NC-NC-NC 267297_at At2g23780 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (68415.m02840) 75 Not regulated NC-NC-NC 287302_at At2g30100 ubiquitin family protein low similarity to SP|Q9UQ13 Leucine-rich repeat protein SHOC-2 (Ras-binding protein Sur-8) {Homo sapiens}; contains Pfam profiles PF00240: Ubiquitin family, PF01535: PPR repeat, PF00560: Leucine Rich Repeat (68415.m03863) 76 Not regulated NC-NC-NC 267306_at At2g30060 Ran-binding protein 1b (RanBP1b) nearly identical to atranbp 1b [Arabidopsis thaliana] GI: 2058284 (68415.m03856) 77 Not regulated NC-NC-NC 267307_at At2g30210 laccase, putative/diphenol oxidase, putative similar to laccase [Populus balsamifera subsp. trichocarpa][GI: 3805960] (68415.m03674) 78 Not regulated NC-NC-NC 267277_at At2g30050 transducin family protein/WD-40 repeat family protein similar to SEC13-related protein (SP: P55735) [Homo sapiens] (68415.m03664) 79 Not regulated NC-NC-NC 287247_at At2g30170 expressed protein (68415.m03671) 80 Not regulated NC-NC-NC 267251_at At2g23070 casein kinase II alpha chain, putative similar to casein kinase II, alpha chain (CK II) [Zea mays] SWISS-PROT: P28523; contains protein kinase domain, Pfam: PF00069 (68415.m02750) 81 Not regulated NC-NC-NC 267257_at At2g23080 casein kinase II alpha chain, putative identical to probable casein kinase II, alpha chain [Arabidopsis thaliana] SWISS- PROT: O64817; similar to casein kinase II, alpha chain 1 [Arabidopsis thaliana] SWISS-PROT: Q08467 (68415.m02751) 82 Not regulated NC-NC-NC 267258_at At2g23140 armadillo/beta-catenin repeat family protein/U-box domain-containing protein contains Pfam domain, PF00514: Armadillo/beta- catenin-like repeats and Pfam, PF04564: U-box domain (68415.m02763) 83 Not regulated NC-NC-NC 267260_at At2g23130 arabinogalactan-protein (AGP17) identical to gi_11935088_gb_AAG41983 (68415.m02759) 84 Not regulated NC-NC-NC 267262_at At2g22990 sinapoylglucose:malate sinapoyltransferase (SNG1) similar to serine carboxypeptidase I precursor (SP: P37890) [Oryza sativa]; contains Pfam profile PF00450: Serine carboxypeptidase; identical to cDNA sinapoylglucose:malate sinapoyltansferase (SNG1) GI: 8699618 (68415.m02733) 85 Not regulated NC-NC-NC 267265_at At2g22980 serine carboxypeptidase S10 family protein similar to serine carboxypeptidase I precursor (SP: P37890) from [Oryza sativa] (68415.m02731) 86 Not regulated NC-NC-NC 267266_at At2g23150 NRAMP metal ion transporter 3 (NRAMP3) identical to metal transporter Nramp3 [Arabidopsis thaliana] gi|6468012|gb|AAF13278: member of the natural resistance-associated macrophage protein (NRAMP) metal transporter family, PMID: 11500563 (88415.m02765) 87 Not regulated NC-NC-NC 287226_at At2g44010 expressed protein (68415.m05472) 88 Not regulated NC-NC-NC 267233_s_at At2g43920 thiol methyltransferase, putative similar to thiol methyltransferase 1 GI: 14583119 from [Brassica oleracea] (68415.m05459) 89 Not regulated NC-NC-NC 267238_at At2g44100 Rab GDP dissociation inhibitor (GDI1) identical to GDP dissociation inhibitor [Arabidopsis thaliana] GI: 1655424 (68415.m05484) 90 Not regulated NC-NC-NC 267211_at At2g44065 ribosomal protein L2 family protein similar to ribosomal protein L2 [Gossypium arboreum] GI: 17644114; contains Pfam profile PF03947: Ribosomal Proteins L2. C-terminal domain (68415.m05479) 91 Not regulated NC-NC-NC 267212_at At2g44060 late embryogenesis abundant family protein/LEA family protein similar to ethylene-responsive late embryogenesis-like protein [Lycopersicon esculentum] GI: 1684830; contains Pfam profile PF03168: Late embryogenesis abundant protein (68415.m05477) 92 Not regulated NC-NC-NC 267185_at At2g43950 expressed protein (68415.m05463) 93 Not regulated NC-NC-NC 267188_at At2g44050 6,7-dimethyl-8-ribityllumazine synthase/DMRL synthase/lumazine synthase/riboflavin synthase identical to 6,7-dimethyl-8- ribityllumazine synthase, chloroplast [precursor] SP: O80575 from [Arabidopsis thaliana] (68415.m05476) 94 Not regulated NC-NC-NC 267189_at At2g44180 methionyl aminopeptidase, putative/methionine aminopeptidase, putative/peptidase M, putative similar to SP|P50579 Methionine aminopeptidase 2 (EC 3.4.11.18) (MetAP 2) {Homo sapiens}; contains Pfam profile PF00557: metallopeptidase family M24 (68415.m05496) 95 Not regulated NC-NC-NC 267196_at At2g30950 FtsH protease (VAR2) identical to zinc dependent protease VAR2 GI: 7650138 from [Arabidopsis thaliana] (68415.m03775) 96 Not regulated NC-NC-NC 267208_at At2g30980 shaggy-related protein kinase delta/ASK-delta/ASK-dzeta (ASK4) identical to shaggy-related protein kinase delta (ASK-delta) (ASK-dzeta) [Arabidopsis thaliana] SWISS-PROT: Q39010 (68415.m03778) 97 Not regulated NC-NC-NC 267151_at At2g30970 aspartate aminotransferase, mitochondrial/transaminase A (ASP1) identical to SP|P46643 Aspartate aminotransferase, mitochondrial precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis thaliana} (68415.m03777) 98 Not regulated NC-NC-NC 267152_at At2g31040 ATP synthase protein I-related contains weaks similarity to Swiss-Prot: P08443 ATP synthase protein I [Synechococcus sp.] (68415.m03786) 99 Not regulated NC-NC-NC 267153_at At2g30860 glutathione S-transferase, putative identical to GB: Y12295 (68415.m03761) 100 Not regulated NC-NC-NC 267161_at At2g37680 phytochrome A specific signal transduction component (PAT3)/far-red elongated hypocotyl protein 1 (FHY1) identical to phytochrome A specific signal transduction component PAT3 [Arabidopsis thaliana] gi|19421998|gb|AAL87850; identical to far-red elongated hypocotyl protein 1 [Arabidopsis thaliana] gi|17148773|gb|AAL35819 (68415.m04621) 101 Not regulated NC-NC-NC 267171_at At2g37590 Dof-type zinc finger domain-containing protein (68415.m04612) 102 Not regulated NC-NC-NC 267175_s_at At2g37620 actin 1 (ACT1) identical to SP|P10671 Actin 1 (Actin 3) {Arabidopsis thaliana} (68415.m04615) 103 Not regulated NC-NC-NC 267179_at At2g37550 arabidopsis pde1 suppressor 1 protein (ASP1) identical to arabidopsis pde1 suppressor 1 (Asp1) from GI: 4519792 [Arabidopsis thaliana]; contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP) (68415.m04605) 104 Not regulated NC-NC-NC 267180_at At2g37570 expressed protein (68415.m04608) 105 Not regulated NC-NC-NC 267181_at At2g37760 aldo/keto reductase family protein similar to chalcone reductase [Sesbania rostrata][GI: 2792155], and aldose reductase ALDRXV4 [Xerophyte viscosa][GI: 4539944], [Hordeum vulgare][GI: 728592] (68415.m04633) 106 Not regulated NC-NC-NC 267121_at At2g23540 GDSL-motif lipase/hydrolase family protein similar to family II lipase EXL1 GI: 15054382 from [Arabidopsis thaliana]; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase (68415.m02809) 107 Not regulated NC-NC-NC 267127_at At2g23610 esterase, putative similar to ethylene-induced esterase [Citrus sinensis] GI: 14279437, polyneuridine aldehyde esterase [Rauvolfia serpentina] GI: 6651393; contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68415.m02817) 108 Not regulated NC-NC-NC 267128_at At2g23620 esterase, putative similar to ethylene-induced esterase [Citrus sinensis] GI: 14279437, polyneuridine aldehyde esterase [Rauvolfia serpentina] GI: 6651393; contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68415.m02818) 109 Not regulated NC-NC-NC 267132_at At2g23420 nicotinate phosphoribosyltransferase family protein/NAPRTase family protein contains Pfam domain PF04095: Nicotinate phosphoribosyltransferase (NAPRTase) (68415.m02796) 110 Not regulated NC-NC-NC 267134_at At2g23450 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68415.m02799) 111 Not regulated NC-NC-NC 267142_at At2g38290 ammonium transporter 2 (AMT2) identical to SP|Q9M6N7 Ammonium transporter 2 (AtAMT2) {Arabidopsis thaliana} (68415.m04703) 112 Not regulated NC-NC-NC 267145_at At2g38130 GCN5-related N-acetyltransferase, putative similar to SP|Q03503 L-A virus GAG protein N-acetyltransferase (EC 2.3.1.—) {Saccharomyces cerevisiae}; contains Pfam profile PF00583: acetyltransferase, GNAT family (68415.m04680) 113 Not regulated NC-NC-NC 267088_at At2g38140 chloroplast 30S ribosomal protein S31 (PSRP4) (68415.m04682) 114 Not regulated NC-NC-NC 267090_at At2g38270 CAX-interacting protein, putative identical to cDNA CAXIP1-like protein GI: 27752306; contains Pfam profile PF00462: Glutaredoxin; contains TIGRfam profile TIGR00365: glutaredoxin-related protein (68415.m04700) 115 Not regulated NC-NC-NC 267092_at At2g38120 amino acid permease, putative (AUX1) identical to AUX1 GI: 1531758 from [Arabidopsis thaliana] (68415.m04679) 116 Not regulated NC-NC-NC 267093_at At2g38170 calcium exchanger (CAX1) identical to high affinity calcium antiporter CAX1 [Arabidopsis thaliana] gi|9256741|gb|AAB05913, except a possible frameshift at base 58008. Sequence has been confirmed with 5 sequencing reads.; Ca2+: Cation Antiporter (CaCA) Family member PMID: 11500563 (68415.m04685) 117 Not regulated NC-NC-NC 267094_at At2g38080 laccase, putative/diphenol oxidase, putative similar to diphenol oxidase [Nicotiana tabacum][GI: 1685087] (68415.m04674) 118 Not regulated NC-NC-NC 267095_at At2g38280 AMP deaminase, putative/myoadenylate deaminase, putative similar to SP|P15274 AMP deaminase (EC 3.5.4.6) (Myoadenylate deaminase) {Saccharomyces cerevisiae}; contains Pfam profile PF00962: Adenosine/AMP deaminase (68415.m04701) 119 Not regulated NC-NC-NC 267096_at At2g38180 GDSL-motif lipase/hydrolase family protein similar to SP|P41734 Isoamyl acetate-hydrolyzing esterase (EC 3.1.—.—) {Saccharomyces cerevisiae}; contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif (68415.m04688) 120 Not regulated NC-NC-NC 267102_at At2g41500 WD-40 repeat family protein/small nuclear ribonucleoprotein Prp4p-related similar to U4/U6 small nuclear ribonucleoprotein hPrp4 (GP: 2708305) {Homo sapiens}; contains Pfam PF00400: WD domain, G-beta repeat (7 copies)|19877698|gb|AU238529.1|AU238529 (68415.m05127) 121 Not regulated NC-NC-NC 267106_s_at At2g14740 vacuolar sorting receptor, putative nearly identical to vacuolar sorting receptor homolog [Arabidopsis thaliana] GI: 1737220; contains a calcium-binding EGF-like domain signature (68415.m01662) 122 Not regulated NC-NC-NC 267057_at At2g32500 expressed protein (68415.m03971) 123 Not regulated NC-NC-NC 267059_at At2g32520 dienelactone hydrolase family protein low similarity to dienelactone hydrolase [Pseudomonas resinovorans] GI: 13094163; contains Pfam profile PF01738: Dienelactone hydrolase family (68415.m03973) 124 Not regulated NC-NC-NC 267062_at At2g32600 hydroxyproline-rich glycoprotein family protein similar to SWISS-PROT: Q15428 (68415.m03980) 125 Not regulated NC-NC-NC 267063_at At2g41120 expressed protein (68415.m05079) 126 Not regulated NC-NC-NC 267064_at At2g41110 calmodulin-2/3/5 (CAM2) (CAL1) almost identical to Calmodulin-2/3/5 SP: P25069 from [Arabidopsis thaliana] (68415.m05078) 127 Not regulated NC-NC-NC 267069_at At2g41010 VQ motif-containing protein contains PF05678: VQ motif (68415.m05065) 128 Not regulated NC-NC-NC 267073_at At2g41160 ubiquitin-associated (UBA)/TS-N domain-containing protein contains Pfam profile PF00627: UBA/TS-N domain (68415.m05084) 129 Not regulated NC-NC-NC 267077_at At2g40970 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain (68415.m05060) 130 Not regulated NC-NC-NC 267080_at At2g41190 amino acid transporter family protein low similarity to vesicular GABA transporter [Rattus norvegicus] GI: 2587061; belongs to INTERPRO: IPR002422 amino acid/polyamine transporter, family II (68415.m05087) 131 Not regulated NC-NC-NC 267084_at At2g41180 sigA-binding protein-related low similarity to SigA binding protein [Arabidopsis thaliana] GI: 6980074; contains Pfam domain PF05678: VQ motif (68415.m05086) 132 Not regulated NC-NC-NC 267052_at At2g38410 VHS domain-containing protein/GAT domain-containing protein weak similarity to hepatocyte growth factor-regulated tyrosine kinase substrate HRS isoform 2 [Homo sapiens] GI: 9022389; contains Pfam profiles PF00790: VHS domain, PF03127: GAT domain (68415.m04718) 133 Not regulated NC-NC-NC 267027_at At2g38330 MATE efflux family protein low similarity to enhanced disease susceptibility 5 [Arabidopsis thaliana] GI: 16589070; contains Pfam profile PF01554: Uncharacterized membrane protein family (68415.m04709) 134 Not regulated NC-NC-NC 267033_at At2g38450 expressed protein (68415.m04722) 135 Not regulated NC-NC-NC 266996_at At2g34490 cytochrome P450 family protein similar to Cytochrome P450 61 (C-22 sterol desaturase) (SP: P54781) {Saccharomyces cerevisiae}; contains Pfam profile: PF00067 cytochrome P450; supported by full-length cDNA: Ceres: 158108, (68415.m04235) 136 Not regulated NC-NC-NC 267000_at At2g34310 expressed protein (68415.m04197) 137 Not regulated NC-NC-NC 267002_s_at At2g34430 chlorophyll A-B binding protein/LHCII type I (LHB1B1) identical to photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana] GI: 16366 (68415.m04223) 138 Not regulated NC-NC-NC 267004_at At2g34260 transducin family protein/WD-40 repeat family protein similar to Vegetatible incompatibility protein HET-E-1 (SP: Q00808) {Podospora anserina} (68415.m04191) 139 Not regulated NC-NC-NC 266988_at At2g39310 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI: 2997767; contains Pfam profile PF01419 jacalin-like lectin domain (68415.m04826) 140 Not regulated NC-NC-NC 266991_at At2g39290 phosphatidylglycerolphosphate synthase (PGS1) identical to phosphatidylglycerolphosphate synthase GI: 13365519 from [Arabidopsis thaliana] (68415.m04824) 141 Not regulated NC-NC-NC 266963_at At2g39450 cation efflux family protein contains cation efflux family protein domain, Pfam: PF01545 (68415.m04842) 142 Not regulated NC-NC-NC 266975_at At2g39380 exocyst subunit EXO70 family protein contains Pfam domain PF03081: Exo70 exocyst complex subunit; (68415.m04833) 143 Not regulated NC-NC-NC 266977_at At2g39420 esterase/lipase/thioesterase family protein similar to monoglyceride lipase from [Homo sapiens] GI: 14594904, [Mus musculus] GI: 2632162; contains Interpro entry IPR000379 (68415.m04839) 144 Not regulated NC-NC-NC 266978_at At2g39430 disease resistance-responsive protein-related/dirigent protein-related contains similarity to disease resistance response protein 206-d [Pisum sativum] gi|508844|gb|AAB18669; contains similarity to dirigent protein [Thuja plicata] gi|6694709|gb|AAF25365 (68415.m04840) 145 Not regulated NC-NC-NC 266979_at At2g39470 photosystem II reaction center PsbP family protein (68415.m04844) 146 Not regulated NC-NC-NC 266938_at At2g18950 homogentisate phytylprenyltransferase family protein (HPT1)/tocopherol phytyltransferase family protein (TPT1) identical to gi: 17104828; contains Pfam profile PF01040: UbiA prenyltransferase family; identical to cDNA tocopherol polyprenyltransferase (TPT1) GI: 17104827 (68415.m02212) 147 Not regulated NC-NC-NC 266948_at At2g18850 SET domain-containing protein low similarity to ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N- methyltransferase I [Spinacia oleracea] GI: 3403236; contains Pfam profile PF00856: SET domain (68415.m02196) 148 Not regulated NC-NC-NC 266950_at At2g16910 hydroxyproline-rich glycoprotein family protein (68415.m02206) 149 Not regulated NC-NC-NC 266955_at At2g34520 ribosomal protein S14 mitochondrial family protein identical to ribosomal protein S14 {Arabidopsis thaliana} NCBI_gi: 4583554 (68415.m04240) 150 Not regulated NC-NC-NC 266956_at At2g34510 expressed protein contains Pfam profile PF04862: Protein of unknown function, DUF642 (68415.m04239) 151 Not regulated NC-NC-NC 266958_at At2g34630 geranyl diphosphate synthase, putative/GPPS, putative/dimethylallyltransferase, putative/prenyl transferase, putative identical to GI: 11322965 A. thaliana geranyl diphosphate synthase (68415.m04254) 152 Not regulated NC-NC-NC 266899_at At2g34620 mitochondrial transcription termination factor-related/mTERF-related contains Pfam profile PF02536: mTERF (68415.m04253) 153 Not regulated NC-NC-NC 266904_at At2g34590 transketolase family protein similar to SP|O66113 Pyruvate dehydrogenase E1 component, beta subunit (EC 1.2.4.1). {Zymomonas mobilis}; contains Pfam profiles PF02779: Transketolase, pyridine binding domain, PF02780: Transketolase, C-terminal domain (68415.m04250) 154 Not regulated NC-NC-NC 266911_at At2g45910 protein kinase family protein/U-box domain-containing protein contains Pfam profiles PF00069 Eukaryotic protein kinase domain, PF04564: U-box domain; supported by tandem duplication of (GI: 3386604) (TIGR_Ath1: At2g45920) [Arabidopsis thaliana] (68415.m05709) 155 Not regulated NC-NC-NC 266924_at At2g45730 eukaryotic initiation factor 3 gamma subunit family protein contains Pfam profile PF04189: Eukaryotic initiation factor 3, gamma subunit (68415.m05688) 156 Not regulated NC-NC-NC 266896_at At2g45810 DEAD/DEAH box helicase, putative (68415.m05697) 157 Not regulated NC-NC-NC 266898_at At2g45990 expressed protein (68415.m05718) 158 Not regulated NC-NC-NC 266876_at At2g44820 expressed protein (68415.m05578) 159 Not regulated NC-NC-NC 266885_at At2g44610 Ras-related GTP-binding protein, putative similar to GTP-binding protein GI: 623586 from [Nicotiana tabacum]; contains an ADP- ribosylation factors family signature for proteins involved in protein trafficking (68415.m05553) 160 Not regulated NC-NC-NC 266887_at At2g44650 chloroplast chaperonin 10 (cpn10) identical to chloroplast chaperonin 10 GI: 14041813 from [Arabidopsis thaliana] (68415.m05557) 161 Not regulated NC-NC-NC 266889_at At2g44640 expressed protein (68415.m05556) 162 Not regulated NC-NC-NC 266890_at At2g44620 acyl carrier protein, mitochondrial/ACP/NADH-ubiquinone oxidoreductase 9.6 kDa subunit identical to SP|P53665 Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (MtACP-1) {Arabidopsis thaliana}; identical to cDNA acyl carrier protein precursor GI: 468285 (68415.m05554) 163 Not regulated NC-NC-NC 266838_at At2g25980 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI: 2997767; contains Pfam profile PF01419 jacalin-like lectin domain (68415.m03120) 164 Not regulated NC-NC-NC 266845_at At2g26110 expressed protein (68415.m03133) 165 Not regulated NC-NC-NC 266846_at At2g25970 KH domain-containing protein (68415.m03117) 166 Not regulated NC-NC-NC 266847_at At2g26060 transducin family protein/WD-40 repeat family protein contains 7 WD-40 repeats (PF00400); similar to WD40-repeat containing protein Ciao 1 (SP: O76071) [Homo sapiens] (68415.m03129) 167 Not regulated NC-NC-NC 266848_at At2g25950 expressed protein (68415.m03115) 168 Not regulated NC-NC-NC 266855_at At2g26920 ubiquitin-associated (UBA)/TS-N domain-containing protein contains Pfam profile PF00627; UBA/TS-N domain (68415.m03229) 169 Not regulated NC-NC-NC 266861_at At2g26830 choline/ethanolamine kinase family protein similar to SP|Q9HBU6 Ethanolamine kinase (EC 2.7.1.82) (EKI){Homo sapiens}, GmCK3p [Glycine max] GI: 1438883; contains Pfam profile PF01633: Choline/ethanolamine kinase (68415.m03219) 170 Not regulated NC-NC-NC 266863_at At2g26930 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK) (CDPMEK) identical to 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast precursor (CMK) (4-(cytidine-5′-diphospho)-2-C-methyl-D-erythritol kinase)(CDPMEK) [Arabidopsis thaliana] SWISS- PROT: O81014 (68415.m03230) 171 Not regulated NC-NC-NC 266865_at At2g29980 omega-3 fatty acid desaturase, endoplasmic reticulum (FAD3) identical to SP: 48623 (68415.m03646) 172 Not regulated NC-NC-NC 266835_at At2g29990 pyridine nucleotide-disulphide oxidoreductase family protein similar to SP|P32340 Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor (EC 1.6.5.3) (Internal NADH dehydrogenase) {Saccharomyces cerevisiae}; contains Pfam profile PF00070: Pyridine nucleotide-disulphide oxidoreductase (68415.m03648) 173 Not regulated NC-NC-NC 266806_at At2g30000 expressed protein contains Pfam domain PF03660: Uncharacterised protein family (UPF0123) (68415.m03650) 174 Not regulated NC-NC-NC 266813_at At2g44920 thylakoid lumenal 15 kDa protein, chloroplast identical to SP|O22160 Thylakoid lumenal 15 kDa protein, chloroplast precursor (p15) {Arabidopsis thaliana}; contains 8 pentapeptide repeats (68415.m05591) 175 Not regulated NC-NC-NC 266815_at At2g44900 armadillo/beta-catenin repeat family protein/F-box family protein contains similarity to F-box protein FBL2 GI: 6010699 from [Rattus norvegicus]; contains Pfam profiles PF00514: Armadillo/beta-catenin-like repeat, PF00646: F-box domain (68415.m05589) 176 Not regulated NC-NC-NC 266819_at At2g44870 expressed protein (68415.m05586) 177 Not regulated NC-NC-NC 266799_at At2g22860 phytosulfokines 2 (PSK2) identical to phytosulfokines 2 (PSK2) from [Arabidopsis thaliana] (68415.m02714) 178 Not regulated NC-NC-NC 266790_at At2g28950 expansin, putative (EXP6) similar to expansin GI: 2828241 from [Brassica napus]; contains Pfam profile PF01357: Pollen allergen (68415.m03521) 179 Not regulated NC-NC-NC 266791_at At2g02960 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger); contains PROSITE PS00190: Cytochrome c family heme-binding site signature (68415.m00244) 180 Not regulated NC-NC-NC 266792_at At2g02860 sucrose transporter/sucrose-proton symporter (SUC3) identical to sucrose transporter [Arabidopsis thaliana] GI: 8052190; similar to sucrose transporters from [Oryza sativa (japonica cultivar-group)] GI: 2723471, [Zea mays] GI: 5771354, [Triticum aestivum] GI: 19548165; contains Pfam profile PF00083: major facilitator superfamily protein (68415.m00235) 181 Not regulated NC-NC-NC 266796_at At2g02880 mucin-related similar to putative mucin GI: 18071389 [Oryza sativa] (68415.m00238) 182 Not regulated NC-NC-NC 266770_at At2g03090 expansin, putative (EXP15) identical to SWISS-PROT: O80622 alpha-expansin 15 precursor (At-EXP15)[Arabidopsis thaliana]; alpha-expansin gene family, PMID: 11641069 (68415.m00262) 183 Not regulated NC-NC-NC 266744_at At2g02970 nucleoside phosphatase family protein/GDA1/CD39 family protein low similarity to SP|P55772 Ectonucleoside triphosphate diphosphohydrolase 1 (EC 3.6.1.5) (Ecto-apyrase) {Mus musculus}; contains Pfam profile PF01150: GDA1/CD39 (nucleoside phosphatase) family (68415.m00249) 184 Not regulated NC-NC-NC 266745_at At2g02950 phytochrome kinase substrate 1 (PKS1) identical to Swiss-Prot: Q9SWI1 phytochrome kinase substrate 1 [Arabidopsis thaliana] (68415.m00242) 185 Not regulated NC-NC-NC 266747_at At2g02870 kelch repeat-containing F-box family protein weak similarity to Kelch-like protein 5 (Swiss-Prot: Q96PQ7) [Homo sapiens]; contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain (68415.m00237) 186 Not regulated NC-NC-NC 266758_at At2g46920 protein phosphatase 2C family protein/PP2C family protein similar to protein phosphatase-2c (GI: 3608412) [Mesembryanthemum crystallinum]; contains Pfam PF00481: Protein phosphatase 2C domain (68415.m05860) 187 Not regulated NC-NC-NC 266761_at At2g47130 short-chain dehydrogenase/reductase (SDR) family protein similar to 3-beta-hydroxysteroiddehydrogenase GI: 15983819 from [Digitalis lanata] (68415.m05886) 188 Not regulated NC-NC-NC 266767_at At2g46910 plastid-lipid associated protein PAP/fibrillin family protein contains Pfam profile PF04755: PAP_fibrillin (68415.m05858) 189 Not regulated NC-NC-NC 266768_s_at At2g47110 ubiquitin extension protein 6 (UBQ6)/40S ribosomal protein S27A (RPS27aB) identical to GI: 166936 (68415.m05883) 190 Not regulated NC-NC-NC 266735_at At2g46930 pectinacetylesterase, putative similar to pectinacetylesterase precursor GI: 1431629 from [Vigna radiata] (68415.m05862) 191 Not regulated NC-NC-NC 266712_at At2g46750 FAD-binding domain-containing protein low similarity to SP|P58710 L-gulonolactone oxidase (EC 1.1.3.8) {Mus musculus}; contains Pfam profile PF01565: FAD binding domain (68415.m05833) 192 Not regulated NC-NC-NC 266716_at At2g46820 expressed protein (68415.m05842) 193 Not regulated NC-NC-NC 266720_s_at At2g46790 pseudo-response regulator 9 (APRR9)/timing of CAB expression 1-like protein (TL1) identical to pseudo-response regulator 9 GI: 10281000 from [Arabidopsis thaliana], timing of CAB expression 1-like protein [Arabidopsis thaliana] GI: 9247022; contains Pfam profile PF00072: Response regulator receiver domain; identical to cDNA timing of CAB expression 1-like protein GI: 9247021 (68415.m05837) 194 Not regulated NC-NC-NC 266679_at At2g03270 DNA-binding protein, putative similar to Swiss-Prot: Q60560 DNA-binding protein SMUBP-2 (Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin II gene enhancer-binding protein)(RIPE3B-binding complex 3B2 P110 subunit) (RIP-1)[Mesocricetus auratus]; identical to putative helicase (atpc-2 gene) cDNA NCBI_gi: 11191230 (68415.m00280) 195 Not regulated NC-NC-NC 266683_at At2g19950 expressed protein contains 2 transmembrane domains; weak similarity to HPSR2-heavy chain potential motor protein (GI: 871048) [Giardia intestinalis] (68415.m02332) 196 Not regulated NC-NC-NC 266685_at At2g19710 expressed protein contains Pfam profile: PF03398 eukaryotic protein of unknown function, DUF292 (68415.m02303) 197 Not regulated NC-NC-NC 266687_at At2g19670 protein arginine N-methyltransferase, putative similar to protein arginine N-methyltransferase 1-variant 1 [Homo sapiens] GI: 7453577 (68415.m02299) 198 Not regulated NC-NC-NC 266694_at At2g19790 clathrin adaptor complex small chain family protein contains Pfam profile: PF01217 clathrin adaptor complex small chain (68415.m02312) 199 Not regulated NC-NC-NC 266695_at At2g19810 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) (68415.m02316) 200 Not regulated NC-NC-NC 266696_at At2g19680 mitochondrial ATP synthase g subunit family protein contains Pfam profile: PF04718 mitochondrial ATP synthase g subunit (68415.m02300) 201 Not regulated NC-NC-NC 266698_at At2g19830 SNF7 family protein contains Pfam domain, PF03357: SNF7 family (68415.m02319) 202 Not regulated NC-NC-NC 266699_at At2g19730 60S ribosomal protein L28 (RPL28A) (68415.m02305) 203 Not regulated NC-NC-NC 266700_at At2g19740 60S ribosomal protein L31 (RPL31A) (68415.m02306) 204 Not regulated NC-NC-NC 266701_at At2g19760 profilin 1 (PRO1) (PFN1) (PRF1)/allergen Ara t 8 identical to profilin 1 (Allergen Ara t 8) SP: Q42449 GI: 1353770 from [Arabidopsis thaliana] (68415.m02309) 205 Not regulated NC-NC-NC 266702_at At2g19860 hexokinase 2 (HXK2) identical to hexokinase 2 [Arabidopsis thaliana] Swiss-Prot: P93834 (68415.m02322) 206 Not regulated NC-NC-NC 266704_at At2g19940 semialdehyde dehydrogenase family protein similar to N-acetyl-glutamyl-phosphate reductase [Campylobacter jejuni] GI: 6650362; contains Pfam profiles PF02774: Semialdehyde dehydrogenase dimerisation domain, PF01118: Semialdehyde dehydrogenase NAD binding domain (68415.m02330) 207 Not regulated NC-NC-NC 266705_at At2g19750 40S ribosomal protein S30 (RPS30A) (68415.m02307) 208 Not regulated NC-NC-NC 266678_at At2g25870 haloacid dehalogenase-like hydrolase family protein contains Pfam profiles PF00702: haloacid dehalogenase-like hydrolase, PF02130: Uncharacterized protein family UPF0054 (68415.m03105) 209 Not regulated NC-NC-NC 266648_at At2g25840 tRNA synthetase class I (W and Y) family protein contains Pfam profile: PF00579 tRNA synthetases class I (W and Y) (68415.m03100) 210 Not regulated NC-NC-NC 266649_at At2g25810 tonoplast intrinsic protein, putative similar to tonoplast intrinsic protein GI: 4584429 from [Nicotiana tabacum] (68415.m03097) 211 Not regulated NC-NC-NC 266652_at At2g25750 212 Not regulated NC-NC-NC 266657_at At2g25910 3′-5′ exonuclease domain-containing protein/K homology domain-containing protein/KH domain-containing protein contains Pfam profiles PF01612: 3′-5′ exonuclease, PF00013: KH domain (68415.m03109) 213 Not regulated NC-NC-NC 266660_at At2g25920 expressed protein (68415.m03110) 214 Not regulated NC-NC-NC 266672_at At2g29650 inorganic phosphate transporter, putative similar to brain specific Na+-dependent inorganic phosphate cotransporter [Rattus norvegicus] GI: 507415; contains Pfam profile PF00083: major facilitator superfamily protein (68415.m03602) 215 Not regulated NC-NC-NC 266673_at At2g29630 thiamine biosynthesis family protein/thiC family protein contains Pfam profile: PF01964 ThiC family (68415.m03599) 216 Not regulated NC-NC-NC 266646_at At2g29700 pleckstrin homology (PH) domain-containing protein (PH1) identical to AtPH1 [Arabidopsis thaliana] GI: 5926716; contains Pfam profile PF00169: PH domain (68415.m03610) 217 Not regulated NC-NC-NC 266624_s_at At2g35390 ribose-phosphate pyrophosphokinase 1/phosphoribosyl diphosphate synthetase 1 (PRSI) identical to phosphoribosyl diphosphate synthetase 1 (ribose-phosphate pyrophosphokinase 1 (PRS I) [Arabidopsis thaliana] GI: 633140, SP|Q42581 (68415.m04338) 218 Not regulated NC-NC-NC 266635_at At2g35470 expressed protein (68415.m04345) 219 Not regulated NC-NC-NC 266639_at At2g35520 defender against cell death 2 (DAD2) identical to defender against cell death 2 (DAD-2, AtDAD2) [Arabidopsis thaliana] SWISS- PROT: O22622 (68415.m04350) 220 Not regulated NC-NC-NC 266641_at At2g35605 SWIB complex BAF60b domain-containing protein contains Pfam profile PF02201: BAF60b domain of the SWIB complex (68415.m04363) 221 Not regulated NC-NC-NC 266642_at At2g35410 33 kDa ribonucleoprotein, chloroplast, putative/RNA-binding protein cp33, putative similar to SP|P19684 33 kDa ribonucleoprotein, chloroplast precursor {Nicotiana sylvestris}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68415.m04340) 222 Not regulated NC-NC-NC 266608_at At2g35500 shikimate kinase-related low similarity to shikimate kinase precursor from Lycopersicon esculentum [SP|Q00497] (68415.m04348) 223 Not regulated NC-NC-NC 266613_at At2g14900 gibberellin-regulated family protein similar to SP|P46690 Gibberellin-regulated protein 4 precursor {Arabidopsis thaliana} GASA4; contains Pfam profile PF02704: Gibberellin regulated protein (68415.m01694) 224 Not regulated NC-NC-NC 266587_at At2g14880 SWIB complex BAF60b domain-containing protein contains Pfam profile PF02201: BAF60b domain of the SWIB complex (68415.m01691) 225 Not regulated NC-NC-NC 266605_at At2g46020 transcription regulatory protein SNF2, putative similar to SP|P22082 Transcription regulatory protein SNF2 (SWI/SNF complex component SNF2) {Saccharomyces cerevisiae}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain (68415.m05724) 226 Not regulated NC-NC-NC 266581_at At2g46140 late embryogenesis abundant protein, putative/LEA protein, putative similar to SP|P46518 Late embryogenesis abundant protein Lea14-A {Gossypium hirsutum}; contains Pfam profile PF03168: Late embryogenesis abundant protein (68415.m05738) 227 Not regulated NC-NC-NC 266582_at At2g46090 diacylglycerol kinase family protein contains INTERPRO domain, IPR001206, DAG-kinase catalytic domain (68415.m05733) 228 Not regulated NC-NC-NC 266553_at At2g46170 reticulon family protein (RTNLB5) weak similarity to Nogo-C protein [Rattus norvegicus] GI: 6822251; contains Pfam profile PF02453: Reticulon (68415.m05741) 229 Not regulated NC-NC-NC 266554_s_at At2g46280 eukaryotic translation initiation factor 3 subunit 2/TGF-beta receptor interacting protein 1/eIF-3 beta/eIF3i/TRIP-1 (TIF3I1) identical to eukaryotic translation initiation factor 3 subunit 2 (SP: Q38684) {Arabidopsis thaliana}; contains Pfam PF00400: WD domain, G-beta repeat (5 copies) (68415.m05755) 230 Not regulated NC-NC-NC 266557_at At2g46080 expressed protein (68415.m05732) 231 Not regulated NC-NC-NC 266566_at At2g24040 hydrophobic protein, putative/low temperature and salt responsive protein, putative similar to SP|Q9ZNQ7 Hydrophobic protein RCI2A (Low temperature and salt responsive protein LTI6A) {Arabidopsis thaliana}; contains Pfam profile PF01679: Uncharacterized protein family (68415.m02872) 232 Not regulated NC-NC-NC 266572_at At2g23840 HNH endonuclease domain-containing protein contains Pfam profile PF01844: HNH endonuclease (68415.m02848) 233 Not regulated NC-NC-NC 266575_at At2g24060 translation initiation factor 3 (IF-3) family protein similar to SP|P33319 Translation initiation factor IF-3 {Proteus vulgaris}; contains Pfam profiles PF00707: Translation initiation factor IF-3, C-terminal domain, PF05198: Translation initiation factor IF-3, N-terminal domain (68415.m02874) 234 Not regulated NC-NC-NC 266576_at At2g23940 expressed protein contains 2 transmembrane domains; contains Pfam profile PF05620: Protein of unknown function (DUF788) (68415.m02858) 235 Not regulated NC-NC-NC 266520_at At2g23980 cyclic nucleotide-regulated ion channel/cyclic nucleotide-gated channel (CNGC6) identical to cyclic nucleotide and calmodulin- regulated ion channel (cngc6) GI: 4581207 from [Arabidopsis thaliana] (68415.m02863) 236 Not regulated NC-NC-NC 266521_at At2g24020 expressed protein contains Pfam domain PF02575: Uncharacterized BCR, YbaB family COG0718 (68415.m02869) 237 Not regulated NC-NC-NC 266534_at At2g16940 RNA recognition motif (RRM)-containing protein (68415.m01952) 238 Not regulated NC-NC-NC 266536_at At2g16900 expressed protein (68415.m01946) 239 Not regulated NC-NC-NC 266537_at At2g16860 GCIP-interacting family protein similar to GCIP-interacting protein mp29 (GI: 27372623) [Mus musculus]; similar to GCIP-interacting protein P29 (GI: 11967379) [Homo sapiens] (68415.m01939) 240 Not regulated NC-NC-NC 266541_at At2g35110 HEM protein-related weak similarity to Membrane-associated protein Hem (Dhem-2) (Swiss-Prot: P55162) [Drosophila melanogaster]; weak similarity to Nck-associated protein 1 (NAP 1) (p125Nap1) (Membrane-associated protein HEM-2) (Swiss- Prot: P55161)[Rattus norvegicus] (68415.m04307) 241 Not regulated NC-NC-NC 266546_at At2g35270 DNA-binding protein-related contains Pfam domain PF03479: Domain of unknown function (DUF296), found in AT-hook motifs Pfam: PF02178 (68415.m04326) 242 Not regulated NC-NC-NC 266547_at At2g35320 expressed protein (68415.m04331) 243 Not regulated NC-NC-NC 266551_at At2g35260 expressed protein (68415.m04325) 244 Not regulated NC-NC-NC 266517_at At2g35120 glycine cleavage system H protein, mitochondrial, putative similar to SP|Q39732 Glycine cleavage system H protein, mitochondrial precursor {Flaveria anomala}; contains Pfam profile PF01597: Glycine cleavage H-protein (68415.m04308) 245 Not regulated NC-NC-NC 266519_at At2g35155 expressed protein (68415.m04312) 246 Not regulated NC-NC-NC 266509_at At2g47940 DegP2 protease (DEGP2) identical to DegP2 protease GI: 13172275 from [Arabidopsis thaliana]; identical to cDNA DegP2 protease (DEGP2) nuclear gene for chloroplast product GI: 13172274 (68415.m05995) 247 Not regulated NC-NC-NC 266510_at At2g47990 transducin family protein/WD-40 repeat family protein similar to Vegetatible incompatibility protein HET-E-1 (SP: Q00808) {Podospora anserina}; contains 5 WD-40 repeats (PF00400); similar to beta transducin-like protein HET-E2C*4 (GP: 17225206)[Podospora anserina] (68415.m06006) 248 Not regulated NC-NC-NC 266512_at At2g47690 NADH-ubiquinone oxidoreductase-related contains weak similarity to NADH-ubiquinone oxidoreductase 15 kDa subunit (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-15 kDa) (CI-15 kDa) (Swiss-Prot: O43920) [Homo sapiens (68415.m05956) 249 Not regulated NC-NC-NC 266513_at At2g47700 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type(RING finger) (68415.m05957) 250 Not regulated NC-NC-NC 266514_at At2g47890 zinc finger (B-box type) family protein (68415.m05981) 251 Not regulated NC-NC-NC 266482_at At2g47640 small nuclear ribonucleoprotein D2, putative/snRNP core protein D2, putative/Sm protein D2, putative similar to small nuclear ribonucleoprotein Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus] SWISS-PROT: P43330 (68415.m05944) 252 Not regulated NC-NC-NC 266483_at At2g47910 expressed protein (68415.m05987) 253 Not regulated NC-NC-NC 266485_at At2g47630 esterase/lipase/thioesterase family protein similar to monoglyceride lipase from [Homo sapiens] GI: 14594904, [Mus musculus] GI: 2632162; contains Interpro entry IPR000379 (68415.m05942) 254 Not regulated NC-NC-NC 266459_at At2g47970 NPL4 family protein contains Pfam domain, PF05021: NPL4 family (68415.m06001) 255 Not regulated NC-NC-NC 266460_at At2g47930 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO: IPR002965 (68415.m05993) 256 Not regulated NC-NC-NC 266468_at At2g47960 expressed protein (68415.m05999) 257 Not regulated NC-NC-NC 266474_at At2g31110 expressed protein (68415.m03799) 258 Not regulated NC-NC-NC 266476_at At2g31090 expressed protein (68415.m03797) 259 Not regulated NC-NC-NC 266478_at At2g31170 tRNA synthetase class I (C) family protein similar to cysteine-tRNA ligase [Escherichia coli] GI: 41203: contains Pfam profile PF01406: tRNA synthetases class I (C) (68415.m03805) 260 Not regulated NC-NC-NC 266481_at At2g31070 TCP family transcription factor, putative similar to TCP1 protein (GI: 20269127) {Lupinus albus} and cycloidea (GI: 12002867) [Lycopersicon esculentum] (68415.m03791) 261 Not regulated NC-NC-NC 266445_at At2g43105 262 Not regulated NC-NC-NC 266449_at At2g43080 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to prolyl 4-hydroxylase, alpha subunit, from Homo sapiens [GI: 18073925]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain (68415.m05346) 263 Not regulated NC-NC-NC 266451_at At2g43090 aconitase C-terminal domain-containing protein contains Pfam profile PF00694: Aconitase C-terminal domain (68415.m05348) 264 Not regulated NC-NC-NC 266394_at At2g43130 Ras-related protein (ARA-4)/small GTP-binding protein, putative identical to SP: P28187 Ras-related protein ARA-4 {Arabidopsis thaliana} (68415.m05356) 265 Not regulated NC-NC-NC 266407_at At2g38560 transcription factor S-II (TFIIS) domain-containing protein similar to SP|P49373 Transcription elongation factor S-II (TFIIS) {Schizosaccharomyces pombe}; contains Pfam profile PF01096: Transcription factor S-II (TFIIS) (68415.m04737) 266 Not regulated NC-NC-NC 266410_at At2g38770 expressed protein (68415.m04760) 267 Not regulated NC-NC-NC 266413_at At2g38740 haloacid dehalogenase-like hydrolase family protein similar to SP|P71447 Beta-phosphoglucomutase (EC 5.4.2.6) {Lactococcus lactis}; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase (68415.m04757) 268 Not regulated NC-NC-NC 266417_at At2g38550 expressed protein contains Pfam profile PF03647: Uncharacterised protein family (UPF0136) (68415.m04736) 269 Not regulated NC-NC-NC 266418_at At2g38750 annexin 4 (ANN4) nearly identical to annexin (AnnAt4) [Arabidopsis thaliana] GI: 6503084; contains Pfam profile PF00191: Annexin (68415.m04758) 270 Not regulated NC-NC-NC 266421_at At2g38540 nonspecific lipid transfer protein 1 (LTP1) identical to SP|Q42589 (68415.m04735) 271 Not regulated NC-NC-NC 266363_at At2g41250 haloacid dehalogenase-like hydrolase family protein low similarity to SP|Q94915 Rhythmically expressed gene 2 protein (DREG-2) [Drosophila melanogaster); contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase (68415.m05094) 272 Not regulated NC-NC-NC 266370_at At2g41350 expressed protein (68415.m05104) 273 Not regulated NC-NC-NC 266356_at At2g32300 uclacyanin I identical to uclacyanin I GI: 3399767 from [Arabidopsis thaliana]; contains Pfam profile PF02298: Plastocyanin-like domain; identical to cDNA uclacyanin I GI: 3399766 (68415.m03949) 274 Not regulated NC-NC-NC 266359_at At2g32260 cholinephosphate cytidylyltransferase, putative/phosphorylcholine transferase, putative/CTP: phosphocholine cytidylyltransferase, putative strong similarity to CTP: phosphocholine cytidylyltransferase [Brassica napus] GI: 1418125; contains Pfam profile PF01467: Cytidylyltransferase (68415.m03943) 275 Not regulated NC-NC-NC 266334_at At2g32380 expressed protein (68415.m03957) 276 Not regulated NC-NC-NC 266342_at At2g01540 C2 domain-containing protein similar to zinc finger and C2 domain protein GI: 9957238 from [Arabidopsis thaliana] (68415.m00078) 277 Not regulated NC-NC-NC 266345_at At2g01410 hypothetical protein (68415.m00060) 278 Not regulated NC-NC-NC 266328_at At2g01600 epsin N-terminal homology (ENTH) domain-containing protein contains Pfam PF01417: ENTH domain. ENTH (Epsin N-terminal homology) domain; similar to clathrin assembly protein AP180 (GI: 6492344) [Xenopus laevis] (68415.m00084) 279 Not regulated NC-NC-NC 266329_at At2g01590 expressed protein (68415.m00083) 280 Not regulated NC-NC-NC 266331_at At2g01570 gibberellin response modulator (RGA1)/gibberellin-responsive modulator identical to GB: Y11338, member of SCARECROW family (68415.m00081) 281 Not regulated NC-NC-NC 266300_at At2g01420 auxin transport protein, putative similar to auxin transport protein PIN7[Arabidopsis thaliana] gi|5817305|gb|AAD52697 (68415.m00062) 282 Not regulated NC-NC-NC 266303_at At2g27060 leucine-rich repeat transmembrane protein kinase, putative (68415.m03251) 283 Not regulated NC-NC-NC 266306_at At2g26970 exonuclease family protein contains exonuclease domain, Pfam: PF00929 (68415.m03235) 284 Not regulated NC-NC-NC 266310_at At2g26990 COP9 signalosome complex subunit 2/CSN complex subunit 2 (CSN2) proteasome, COP9-complex and elF3-domain protein: identical to CSN complex subunit 2 [Arabidopsis thaliana] GI: 18056655; identical to cDNA CSN complex subunit 2 (CSN2) GI: 18056654 (68415.m03241) 285 Not regulated NC-NC-NC 266314_at At2g27040 PAZ domain-containing protein/piwi domain-containing protein similar to SP|Q9QZ81 Eukaryotic translation initiation factor 2C 2 {Rattus norvegicus}; contains Pfam profiles PF02171: Piwi domain, PF02170: PAZ domain (68415.m03249) 286 Not regulated NC-NC-NC 266315_at At2g27100 C2H2 zinc-finger protein SERRATE (SE) identical to C2H2 zinc-finger protein SERRATE GI: 14488602 from [Arabidopsis thaliana] (68415.m03256) 287 Not regulated NC-NC-NC 266317_at At2g27030 calmodulin-2/3/5 (CAM5) (TCH1) identical to calmodulin GI: 474183 from [Arabidopsis thaliana]. SP|P25069 Calmodulin-2/3/5 {Arabidopsis thaliana} (68415.m03245) 288 Not regulated NC-NC-NC 266319_s_at At2g46720 fatty acid elongase 3-ketoacyl-CoA synthase, putative similar to GI: 4091810; contains Pfam profile PF02797: Chalcone and stilbene synthases, C-terminal domain (68415.m05829) 289 Not regulated NC-NC-NC 266322_at At2g46690 auxin-responsive family protein similar to indole-3-acetic acid induced protein ARG7 (SP: P32295) [Phaseolus aureus] (68415.m05826) 290 Not regulated NC-NC-NC 266271_at At2g29440 glutathione S-transferase, putative (68415.m03577) 291 Not regulated NC-NC-NC 266275_at At2g29370 tropinone reductase, putative/tropine dehydrogenase, putative similar to SP|P50162 Tropinone reductase-I (EC 1.1.1.206) (TR-I) (Tropine dehydrogenase) {Datura stramonium} (68415.m03568) 292 Not regulated NC-NC-NC 266277_at At2g29310 tropinone reductase, putative/tropine dehydrogenase, putative similar to tropinone reductase SP: P50165 from [Datura stramonium] (68415.m03560) 293 Not regulated NC-NC-NC 266279_at At2g29290 tropinone reductase, putative/tropine dehydrogenase, putative similar to tropinone reductase SP: P50165 from [Datura stramonium] (68415.m03558) 294 Not regulated NC-NC-NC 266285_at At2g29180 expressed protein (68415.m03547) 295 Not regulated NC-NC-NC 266289_at At2g29390 sterol 4-alpha-methyl-oxidase 1 (SMO1) nearly identical to sterol 4-alpha-methyl-oxidase GI: 18973469 from [Arabidopsis thaliana]; identical to cDNA sterol 4-alpha-methyl-oxidase (SMO) partial cds, GI: 16973431 (68415.m03570) 296 Not regulated NC-NC-NC 266291_at At2g29320 tropinone reductase, putative/tropine dehydrogenase, putative similar to tropinone reductase SP: P50165 from [Datura stramonium] (68415.m03561) 297 Not regulated NC-NC-NC 266293_at At2g29360 tropinone reductase, putative/tropine dehydrogenase, putative similar to tropinone reductase SP: P50165 from [Datura stramonium] (68415.m03567) 298 Not regulated NC-NC-NC 266237_at At2g29540 DNA-directed RNA polymerase I(A) and III(C) 14 kDa subunit (RPAC14) identical to RNA polymerase I(A) and III(C) 14 kDa subunit (AtRPAC14) [Arabidopsis thaliana] GI: 1184686 (68415.m03588) 299 Not regulated NC-NC-NC 266238_at At2g29400 serine/threonine protein phosphatase PP1 isozyme 1 (TOPP1)/phosphoprotein phosphatase 1 identical to SP|P30366| Serine/threonine protein phosphatase PP1 isozyme 1 (EC 3.1.3.16) {Arabidopsis thaliana}, phosphoprotein phosphatase 1 GI: 166572 [Arabidopsis thaliana] (68415.m03573) 300 Not regulated NC-NC-NC 266239_at At2g29530 mitochondrial import inner membrane translocase (TIM10) identical to mitochondrial import inner membrane translocase subunit Tim10 [Arabidopsis thaliana] Swiss-Prot: Q9ZW33; contains Pfam domain, PF02953: Tim10/DDP family zinc finger (68415.m03587) 301 Not regulated NC-NC-NC 266247_at At2g27660 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain (68415.m03352) 302 Not regulated NC-NC-NC 266253_at At2g27840 histone deacetylase-related/HD-related similar to nucleolar histone deacetylase HD2-p39 [Zea mays] GI: 2257756; contains non- consensus donor splice site AT at exon2 and acceptor splice site AC at exon3. (68415.m03375) 303 Not regulated NC-NC-NC 266257_at At2g27820 prephenate dehydratase family protein (68415.m03373) 304 Not regulated NC-NC-NC 266260_at At2g27600 AAA-type ATPase family protein/vacuolar sorting protein-related similar to SP|P46467 SKD1 protein (Vacuolar sorting protein 4b) {Mus musculus}; contains Pfam profiles PF00004: ATPase AAA family, PF04212: MIT domain (68415.m03346) 305 Not regulated NC-NC-NC 266261_at At2g27580 zinc finger (AN1-like) family protein contains Pfam domains, PF01428: AN1-like Zinc finger and PF01754: A20-like zinc finger (68415.m03342) 306 Not regulated NC-NC-NC 266206_at At2g27730 expressed protein contains 1 transmembrane domain; similar to Unknown mitochondrial protein At2g27730 (Swiss-Prot: Q9ZUX4) [Arabidopsis thaliana] similar to F1F0-ATPase inhibitor protein (GI: 5821432) [Oryza sativa) (68415.m03361) 307 Not regulated NC-NC-NC 266216_at At2g28810 Dof-type zinc finger domain-containing protein similar to zinc finger protein OBP2 GI: 5059394 from [Arabidopsis thaliana] (68415.m03503) 308 Not regulated NC-NC-NC 266221_at At2g28780 NAD-dependent epimerase/dehydratase family protein similar to UDP-glucuronic acid decarboxylase Uxs1p from Filobasidiella neoformans GI: 14318327: contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family (68415.m03497) 309 Not regulated NC-NC-NC 266223_at At2g28790 osmotin-like protein, putative similar to SP|Q41350 Osmotin-like protein precursor {Lycopersicon esculentum}; contains Pfam profile PF00314: Thaumatin family (68415.m03500) 310 Not regulated NC-NC-NC 266224_at At2g28800 chloroplast membrane protein (ALBINO3) Oxa1p homolog {PMID: 11148275}; identical to chloroplast membrane protein ALBINO3 [Arabidopsis thaliana] GI: 2209332 (68415.m03501) 311 Not regulated NC-NC-NC 266228_at At2g28910 CAX-interacting protein 4 (CAXIP4) contains Pfam domain PF00098: Zinc knuckle; identical to cDNA CAX-interacting protein 4 GI: 27651998 (68415.m03513) 312 Not regulated NC-NC-NC 266229_at At2g28840 ankyrin repeat family protein contains ankyrin repeats, Pfam: PF00023 (68415.m03506) 313 Not regulated NC-NC-NC 266202_at At2g02400 cinnamoyl-CoA reductase family similar to cinnamoyl-CoA reductase from Pinus taeda [GI: 17978649], Eucalyptus gunnii [GI: 2058311] (68415.m00180) 314 Not regulated NC-NC-NC 266180_at At2g02470 PHD finger family protein contains Pfam domain, PF00628: PHD-finger (68415.m00186) 315 Not regulated NC-NC-NC 266181_at At2g02390 glutathione S-transferase zeta 1 (GSTZ1) (GST18) identical to SP|Q9ZVQ3|GTZ1_ARATH Glutathione S-transferase zeta-class 1 (EC 2.5.1.18) (AIGSTZ1) (Maleylacetone isomerase) (EC 5.2.1.—) (MAI) {Arabidopsis thallium}; contains Pfam profiles PF02798: Glutathione S-transferase, N-terminal domain and PF00043: Glutathione S-transferase, C-terminal domain (68415.m00177) 316 Not regulated NC-NC-NC 266188_at At2g39000 GCN5-related N-acetyltransferase (GNAT) family protein contains Pfam profile PF00583: acetyltransferase, GNAT family (68415.m04793) 317 Not regulated NC-NC-NC 266189_at At2g39020 GCN5-related N-acetyltransferase (GNAT) family protein similar to SP|Q9SMB8 Tyramine N-feruloyltransferase 4/11 (EC 2.3.1.110) (Hydroxycinnamoyl-CoA: tyramine N-hydroxycinnamoyltransferase) {Nicotiana tabacum}; contains Pfam profile PF00583: acetyltransferase, GNAT family (68415.m04797) 318 Not regulated NC-NC-NC 266192_at At2g39070 319 Not regulated NC-NC-NC 266193_at At2g39080 expressed protein (68415.m04802) 320 Not regulated NC-NC-NC 266168_at At2g38870 protease inhibitor, putative similar to SP|P24076 Glu S. griseus protease inhibitor (BGIA) {Momordica charantia}; contains Pfam profile PF00280: Potato inhibitor I family (68415.m04776) 321 Not regulated NC-NC-NC 266158_at At2g28070 ABC transporter family protein (68415.m03408) 322 Not regulated NC-NC-NC 266165_at At2g28190 superoxide dismutase [Cu—Zn], chloroplast (SODCP)/copper/zinc superoxide dismutase (CSD2) identical to GP: 3273753: AF061519 (68415.m03423) 323 Not regulated NC-NC-NC 266138_at At2g28060 protein kinase-related similar to GAL83 protein [Solanum tuberosum] GI: 5702015; contains Pfam profile PF04739: 5′-AMP- activated protein kinase, beta subunit, complex-interacting region; supporting cDNA gi|22652783|gb|AF491295.1| (68415.m03406) 324 Not regulated NC-NC-NC 266117_at At2g02170 remorin family protein contains Pfam domain, PF03763: Remorin, C-terminal region (68415.m00153) 325 Not regulated NC-NC-NC 266118_at At2g02130 plant defensin-fusion protein, putative (PDF2.3) plant defensin protein family member, personal communication, Bart Thomma (Bart. Thomma@agr.kuleuven.ac.be) (68415.m00149) 326 Not regulated NC-NC-NC 266119_at At2g02100 plant defensin-fusion protein, putative (PDF2.2) plant defensin protein family member, personal communication, Bart Thomma (Bart.Thomma@agr.kuleuven.ac.be); similar to SWISS-PROT: O65740 (68415.m00146) 327 Not regulated NC-NC-NC 266120_at At2g02070 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type (68415.m00143) 328 Not regulated NC-NC-NC 266121_at At2g02160 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc forger C-x8-C-x5-C-x3-H type (and similar) (68415.m00152) 329 Not regulated NC-NC-NC 266123_at At2g45180 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to 14 kDa polypeptide [Catharanthus roseus] GI: 407410; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 (68415.m05625) 330 Not regulated NC-NC-NC 266137_at At2g45010 expressed protein weak similarity to PGPS/D12 [Petunia x hybrida] GI: 4105794; contains Pfam profile PF04749: Protein of unknown function, DUF614 (68415.m05604) 331 Not regulated NC-NC-NC 266103_at At2g45140 vesicle-associated membrane protein, putative/VAMP, putative similar to VAP27 GI: 6688926 [Nicotiana plumbaginifolia] (68415.m05616) 332 Not regulated NC-NC-NC 266079_at At2g37860 expressed protein (68415.m04647) 333 Not regulated NC-NC-NC 266090_at At2g38000 chaperone protein dnaJ-related weak similarity to Chaperone protein dnaJ (Swiss-Prot: Q9ZFC5) [Methylovorus sp.] (68415.m04664) 334 Not regulated NC-NC-NC 266094_at At2g37975 expressed protein (68415.m04661) 335 Not regulated NC-NC-NC 266095_at At2g38050 3-oxo-5-alpha-steroid 4-dehydrogenase, putative/steroid 5-alpha-reductase, putative identical to gi: 1280611; contains a steroid 5- alpha reductase, C-terminal domain (68415.m04671) 336 Not regulated NC-NC-NC 266096_at At2g38020 vacuoleless1 (VCL1) contains Pfam profiles: PF04841 Vps16, N-terminal region, PF04840: Vps16, C-terminal region; identical to cDNA VCL1 (VCL1) GI: 13877132 (68415.m04667) 337 Not regulated NC-NC-NC 266101_at At2g37940 expressed protein (68415.m04657) 338 Not regulated NC-NC-NC 266057_at At2g40660 tRNA-binding region domain-containing protein similar to SP|Q12904 Multisynthetase complex auxiliary component p43 [Contains; Endothelial-monocyte activating polypeptide li (EMAP-II) (Small inducible cytokine subfamily E member 1)] {Homo sapiens}; contains Pfam profile PF01588: Putative tRNA binding domain (68415.m05017) 339 Not regulated NC-NC-NC 266059_at At2g40765 expressed protein (68415.m05029) 340 Not regulated NC-NC-NC 266062_at At2g18730 diacylglycerol kinase, putative contains INTERPRO domain, IPR001206, DAG-kinase catalytic domain (68415.m02181) 341 Not regulated NC-NC-NC 266073_at At2g18770 expressed protein (68415.m02185) 342 Not regulated NC-NC-NC 266074_at At2g18740 small nuclear ribonucleoprotein E, putative/snRNP-E, putative/Sm protein E, putative similar to SWISS-PROT: P08578 small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE) [Chicken] (68415.m02182) 343 Not regulated NC-NC-NC 266017_at At2g18690 expressed protein (68415.m02177) 344 Not regulated NC-NC-NC 266018_at At2g18710 preprotein translocase secY subunit, chloroplast (CpSecY) Identical to SP|Q38885 Preprotein translocase secY subunit, chloroplast precursor (CpSecY) {Arabidopsis thaliana} (68415.m02179) 345 Not regulated NC-NC-NC 266035_at At2g05990 enoyl-[acyl-carrier protein] reductase [NADH], chloroplast, putative/NADH-dependent enoyl-ACP reductase, putative strong similarity to enoyl-[acyl-carrier protein] reductase [NADH] SP: P80030 from [Brassica napus] (68415.m00651) 346 Not regulated NC-NC-NC 266038_s_at At2g05840 20S proteasome alpha subunit A2 (PAA2) identical to GB: AF043519 (68415.m00632) 347 Not regulated NC-NC-NC 266037_at At2g05940 protein kinase, putative similar to auxin-regulated dual specificity cytosolic kinase [Lycopersicon esculentum] gi|14484938|gb|AAK62821 (68415.m00645) 348 Not regulated NC-NC-NC 266015_at At2g24190 short-chain dehydrogenase/reductase (SDR) family protein contains INTERPRO family IPR002198 short-chain dehydrogenase/reductase (SDR) superfamily (68415.m02890) 349 Not regulated NC-NC-NC 265990_at At2g24280 serine carboxypeptidase S2B family protein contains Pfam profile: PF05577 Serine carboxypeptidase S2B (68415.m02901) 350 Not regulated NC-NC-NC 265998_at At2g24270 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative similar to NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (NON-phosphorylating glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase [NADP+]) [Nicotiana plumbaginifolia] SWISS-PROT: P93338 (68415.m02899) 351 Not regulated NC-NC-NC 265999_at At2g24100 expressed protein (68415.m02879) 352 Not regulated NC-NC-NC 266000_at At2g24180 cytochrome P450 family protein (68415.m02889) 353 Not regulated NC-NC-NC 266001_at At2g24150 expressed protein contains Pfam profile PF03006: Uncharacterised protein family (Hly-III/UPF0073) (68415.m02885) 354 Not regulated NC-NC-NC 265953_at At2g37490 355 Not regulated NC-NC-NC 265958_at At2g37250 adenylate kinase family protein contains Pfam profile: PF00406 adenylate kinase (68415.m04570) 356 Not regulated NC-NC-NC 265959_at At2g37240 expressed protein weak similarity to fmHP (GI: 22902096) [Takifugu rubripes] (68415.m04569) 357 Not regulated NC-NC-NC 265960_at At2g37470 histone H2B, putative strong similarity to histone H2B from Lycopersicon esculentum GI: 3021483, GI: 3021485, Capsicum annuum SP|O49118; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 (68415.m04596) 358 Not regulated NC-NC-NC 265962_at At2g37460 nodulin MtN21 family protein similar to MtN21 GI: 2598575 (root nodule development) from [Medicago truncatula] (68415.m04595) 359 Not regulated NC-NC-NC 265963_s_at At2g37270 40S ribosomal protein S5 (RPS5A) identical to GP: 3043428 (68415.m04572) 360 Not regulated NC-NC-NC 265965_at At2g37500 arginine biosynthesis protein ArgJ family contains Pfam profile: PF01960 ArgJ family (68415.m04599) 361 Not regulated NC-NC-NC 265966_at At2g37220 29 kDa ribonucleoprotein, chloroplast, putative/RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} (68415.m04566) 362 Not regulated NC-NC-NC 265968_at At2g37410 mitochondrial import inner membrane translocase (TIM17) nearly identical to SP|Q9SP35 Mitochondrial import inner membrane translocase subunit TIM17 {Arabidopsis thaliana} (68415.m04587) 363 Not regulated NC-NC-NC 265930_at At2g18510 pre-mRNA splicing factor, putative similar to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA splicing factor SF3b 49 kDa subunit) {Homo sapiens}; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (68415.m02157) 364 Not regulated NC-NC-NC 265940_at At2g19480 nucleosome assembly protein (NAP), putative similar to nucleosome assembly protein 1 [Glycine max] GI: 1161252; contains Pfam profile PF00956: Nudeosome assembly protein (NAP) (68415.m02277) 365 Not regulated NC-NC-NC 265943_at At2g19570 cytidine deaminase (CDD)/cytidine aminohydrolase identical to cytidine deaminase (CDD) [Arabidopsis thaliana] GI: 3046700 (68415.m02286) 366 Not regulated NC-NC-NC 265947_at At2g19540 transducin family protein/WD-40 repeat family protein contains WD-40 repeats (PF00400); similar to Glutamate-rich WD repeat protein (GRWD) (SP: Q9BQ67)[Homo sapiens] (68415.m02283) 367 Not regulated NC-NC-NC 265918_at At2g15090 fatty acid elongase, putative similar to fatty acid elongase 1 [GI: 881615] (68415.m01720) 368 Not regulated NC-NC-NC 265920_s_at At2g15120 369 Not regulated NC-NC-NC 265894_at At2g15050 lipid transfer protein, putative similar to SP|Q42641 nonspecific lipid-transfer protein A precursor (LTP A) (Wax-associated protein 9A) {Brassica oleracea}; contains Pfam Protease inhibitor/seed storage/LTP family domain PF00234 (68415.m01714) 370 Not regulated NC-NC-NC 265895_at At2g15000 expressed protein (68415.m01707) 371 Not regulated NC-NC-NC 265909_at At2g25720 expressed protein (68415.m03083) 372 Not regulated NC-NC-NC 265911_at At2g25670 expressed protein (68415.m03076) 373 Not regulated NC-NC-NC 265887_at At2g25710 holocarboxylase synthetase 1 (HCS1) identical to holocarboxylase synthetase 1 (hcs1) [Arabidopsis thaliana] GI: 19698365 (68415.m03081) 374 Not regulated NC-NC-NC 265858_at At2g01720 ribophorin I family protein similar to SP|P04843 Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 67 kDa subunit precursor (EC 2.41.119) (Ribophorin I) {Homo sapiens}; contains Pfam profile PF04597: Ribophorin I (68415.m00100) 375 Not regulated NC-NC-NC 265866_at At2g01710 DNAJ heat shock N-terminal domain-containing protein simlar to AHM1 [Triticum aestivum] GI: 6691467; contains Pfam profile PF00226: DnaJ domain (68415.m00099) 376 Not regulated NC-NC-NC 265867_at At2g01620 expressed protein (68415.m00088) 377 Not regulated NC-NC-NC 265868_at At2g01650 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger. C2H2 type (68415.m00091) 378 Not regulated NC-NC-NC 265874_at At2g01640 expressed protein (68415.m00090) 379 Not regulated NC-NC-NC 265683_at At2g42310 expressed protein (68415.m05237) 380 Not regulated NC-NC-NC 265852_at At2g42350 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097; Zinc finger, C3HC4 type (RING finger) (68415.m05241) 381 Not regulated NC-NC-NC 265855_at At2g42390 protein kinase C substrate, heavy chain-related similar to Protein kinase C substrate, 80 kDa protein, heavy chain (PKCSH) (80K-H protein) (Swiss-Prot: P14314) [Homo sapiens]; contains 1 transmembrane domain; (68415.m05246) 382 Not regulated NC-NC-NC 265857_s_at At2g42500 serine/threonine protein phosphatase PP2A-3 catalytic subunit (PP2A3) identical to SP|Q07100 Serine/threonine protein phosphatase PP2A-3 catalytic subunit (EC 3.1.3.18) {Arabidopsis thaliana}; contains Pfam profile PF00149: Ser/Thr protein phosphatase (68415.m05258) 383 Not regulated NC-NC-NC 265844_at At2g35620 leucine-rich repeat transmembrane protein kinase, putative similar to somatic embryogenesis receptor-like kinase 1 (SERK1) [Zea mays] gi|13897318|emb|CAC37640; contains leucine rich repeat (LRR) domains, Pfam: PF00560; contains protein kinase domain, Pfam: PF00069 (68415.m04368) 384 Not regulated NC-NC-NC 265825_at At2g35635 ubiquitin family protein contains INTERPRO: IPR000626 ubiquitin domain (68415.m04370) 385 Not regulated NC-NC-NC 265826_at At2g35795 DNAJ heat shock N-terminal domain-containing protein contains Pfam profile PF00226 DnaJ domain (68415.m04394) serine carboxypeptidase S10 family protein similar to Serine carboxypeptidase II chains A and B (SP: P08819) (EC 3.4.16.6) 386 Not regulated NC-NC-NC 265795_at At2g35780 [Triticum aestivum (Wheat)]; (68415.m04390) 387 Not regulated NC-NC-NC 265798_at At2g35790 expressed protein (68415.m04392) 388 Not regulated NC-NC-NC 265800_at At2g35630 microtubule organization 1 protein (MOR1) identical to microtubule organization 1 protein GI: 14317953 from [Arabidopsis thaliana] (68415.m04369) 389 Not regulated NC-NC-NC 265805_s_at At2g18020 60S ribosomal protein L8 (RPL8A) (68415.m02094) 390 Not regulated NC-NC-NC 265810_at At2g18090 PHD finger family protein/SWIB complex BAF60b domain-containing protein/GYF domain-containing protein contains Pfam profiles PF02201: BAF60b domain of the SWIB complex, PF02213: GYF domain, PF00628: PHD-finger (68415.m02103) 391 Not regulated NC-NC-NC 265816_s_at At2g18110 elongation factor 1-beta, putative/EF-1-beta, putative nearly identical to eEF-1beta [Arabidopsis thaliana] GI: 398606 (68415.m02105) 392 Not regulated NC-NC-NC 265818_at At2g18040 peptidyl-prolyl cis-trans isomerase (PIN1)/cyclophilin/rotamase identical to Chain A, Solution Structure Of Pin1at From 393 Not regulated NC-NC-NC 265819_at At2g17972 Arabidopsis Thaliana GI: 22218833; contains Pfam profile PF00639: PPIC-type PPIASE domain (68415.m02097) expressed protein (68415.m02086) 394 Not regulated NC-NC-NC 265768_at At2g48020 sugar transporter, putative similar to ERD6 protein {Arabidopsis thaliana} GI: 3123712, sugar-porter family proteins 1 and 2 [Arabidopsis thaliana] GI: 14585699, GI: 14585701: contains Pfam profile PF00083: major facilitator superfamily protein (68415.m06010) 395 Not regulated NC-NC-NC 265770_at At2g48100 exonuclease family protein contains Pfam domain PF00929: exonuclease (68415.m06020) 396 Not regulated NC-NC-NC 265773_at At2g48070 expressed protein (68415.m06016) 397 Not regulated NC-NC-NC 265776_at At2g07340 prefoldin-related KE2 family protein contains similarity to Swiss-Prot: O60925 prefoldin subunit 1 [Homo sapiens]; contains Pfam domain, PF01920: KE2 family protein (68415.m00841) 398 Not regulated NC-NC-NC 265777_at At2g07350 399 Not regulated NC-NC-NC 265790_at At2g01170 amino acid permease family protein weak similarity to GABA permease [Emericella nidulans] GI: 4972245; contains Pfam profile PF00324: Amino add permease (68415.m00025) 400 Not regulated NC-NC-NC 265736_at At2g01250 60S ribosomal protein L7 (RPL7B) (68415.m00037) 401 Not regulated NC-NC-NC 265739_at At2g01270 thioredoxin family protein low similarity to quiescin [Homo sapiens] GI: 13257405; contains Pfam profiles PF00065: Thioredoxin, PF04777: Erv1/Alr family (68415.m00040) 402 Not regulated NC-NC-NC 265740_at At2g01150 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68415.m00024) 403 Not regulated NC-NC-NC 265741_at At2g01320 ABC transporter family protein (68415.m00046) 404 Not regulated NC-NC-NC 265742_at 

At2g01290 expressed protein (68415.m00043) 405 Not regulated NC-NC-NC 265759_at At2g13100 glycerol-3-phosphate transporter, putative/glycerol 3-phosphate permease, putative similar to glycerol-3-phosphate transporter (glycerol 3-phosphate permease) [Homo sapiens] GI: 7543982; contains Pfam profile PF00083: major facilitator superfamily protein (68415.m01436) 406 Not regulated NC-NC-NC 265703_at At2g03430 ankyrin repeat family protein contains ankyrin repeats, Pfam: PF00023 (68415.m00301) 407 Not regulated NC-NC-NC 265704_at At2g03420 expressed protein (68415.m00300) 408 Not regulated NC-NC-NC 265707_at At2g03390 uvrB/uvrC motif-containing protein contains pfam profile PF02151: UvrB/uvrC motif (68415.m00298) 409 Not regulated NC-NC-NC 265712_s_at At2g03330 expressed protein (68415.m00292) 410 Not regulated NC-NC-NC 265716_at At2g03350 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538 (68415.m00294) 411 Not regulated NC-NC-NC 265720_at At2g40110 yippee family protein similar to mdgl-1 [Mus musculus] GI: 10441648, Yippee protein [Drosophila melanogaster] GI: 5713279; contains Pfam profile PF03226: Yippee putative zinc-binding protein (68415.m04930) 412 Not regulated NC-NC-NC 265722_at At2g40100 chlorophyll A-B binding protein (LHCB4.3) identical to Lhcb4: 3 protein [Arabidopsis thaliana] GI: 4741956; contains Pfam profile: PF00504 chlorophyll A-B binding protein (68415.m04929) 413 Not regulated NC-NC-NC 265697_at At2g32170 expressed protein; supported by cDNA GI: 20259498 (68415.m03932) 414 Not regulated NC-NC-NC 265669_at At2g32040 integral membrane transporter family protein contains 9 transmembrane domains; contains Pfam PF03092: BT1 family; contains TIGRFAMS TIGR00788: folate/biopterin transporter, similar to high affinity folic acid/methotrexate transporter 5 (GI: 21898554) [Leishmania tarentolae] (68415.m03914) 415 Not regulated NC-NC-NC 265671_at At2g32060 40S ribosomal protein S12 (RPS12C) (68415.m03916) 416 Not regulated NC-NC-NC 265673_at At2g32090 lactoylglutathione lyase family protein/glyoxalase I family protein contains glyoxalase family protein domain, Pfam: PF00903 (68415.m03922) 417 Not regulated NC-NC-NC 265676_at At2g32070 CCR4-NOT transcription complex protein, putative similar to SWISS-PROT: Q60809 CCR4-NOT transcription complex, subunit 7 (CCR4-associated factor 1, (CAF1) [Mus musculus] (68415.m03919) 418 Not regulated NC-NC-NC 265677_at At2g32080 PUR alpha-1 protein identical to PUR alpha-1 GI: 5081612 from [Arabidopsis thaliana]; contains Pfam profile: PF04845 PurA ssDNA and RNA-binding protein (68415.m03920) 419 Not regulated NC-NC-NC 265679_at At2g32240 expressed protein contains Pfam profile: PF04508 viral A-type inclusion protein repeat (68415.m03940) 420 Not regulated NC-NC-NC 265685_at At2g24430 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; (68415.m02919) 421 Not regulated NC-NC-NC 265691_at At2g24330 expressed protein (68415.m02908) 422 Not regulated NC-NC-NC 265663_at At2g24290 expressed protein (68415.m02903) 423 Not regulated NC-NC-NC 265664_at At2g24420 DNA repair ATPase-related contains 2 transmembrane domains; similar to DNA double-strand break repair rad50 ATPase. (Swiss- Prot: O33600) [Sulfolobus acidocaldarius] (68415.m02917) 424 Not regulated NC-NC-NC 265637_at At2g27490 dephospho-CoA kinase family similar to Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A kinase). (Swiss- Prot: Q92BF2) [Listeria innocua]; contains Pfam profile PF01121: Dephospho-CoA kinase (68415.m03322) 425 Not regulated NC-NC-NC 265642_at At2g27450 carbon-nitrogen hydrolase family protein low similarity to beta-alanine synthase [Drosophila melanogaster] GI: 14334063; contains Pfam profile PF00795: hydrolase, carbon-nitrogen family (68415.m03317) 426 Not regulated NC-NC-NC 265646_at At2g27360 lipase, putative similar to lipase [Arabidopsis thaliana] GI: 1145627; contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif (68415.m03296) 427 Not regulated NC-NC-NC 265648_at At2g27500 glycosyl hydrolase family 17 protein similar to glucan endo-1,3-beta-glucosidase precursor SP: P52409 from [Triticum aestivum] (68415.m03324) 428 Not regulated NC-NC-NC 265649_at At2g27510 ferredoxin, putative similar to non-photosynthetic ferredoxin from Citrus sinensis [GI: 1360725], Ferredoxin, root R-B2 from Raphanus sativus [SP|P14937]; contains Pfam profile PF00111 2Fe—2S iron-sulfur cluster binding domain (68415.m03327) 429 Not regulated NC-NC-NC 265617_at At2g25520 phosphate translocator-related low similarity to SP|P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea}, phosphoenolpyruvate/phosphate translocator precursor [Mesembryanthemum crystallinum] GI: 9295275 (68415.m03055) 430 Not regulated NC-NC-NC 265626_at At2g27260 expressed protein (68415.m03276) 431 Not regulated NC-NC-NC 265628_at At2g27290 expressed protein (68415.m03280) 432 Not regulated NC-NC-NC 265630_at At2g27350 OTU-like cysteine protease family protein contains Pfam profile PF02338: OTU-like cysteine protease (68415.m03291) 433 Not regulated NC-NC-NC 265575_at At2g14260 proline iminopeptidase identical to GP: 1710151: U72711 (68415.m01594) 434 Not regulated NC-NC-NC 265593_s_at At2g20130 expressed protein contains Pfam domain, PF04367: Protein of unknown function (DUF502) (68415.m02352) 435 Not regulated NC-NC-NC 265594_at At2g20060 ribosomal protein L4 family protein contains Pfam profile PF00573: ribosomal protein L4/L1 family (68415.m02344) 436 Not regulated NC-NC-NC 265595_at At2g20140 26S protease regulatory complex subunit 4, putative similar to Swiss-Prot: P48601 26S protease regulatory subunit 4 (P26S4) [Drosophila melanogaster] (68415.m02353) 437 Not regulated NC-NC-NC 265571_s_at At2g28230 expressed protein (68415.m03427) 438 Not regulated NC-NC-NC 265573_at At2g26200 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type (68415.m03424) 439 Not regulated NC-NC-NC 265569_at At2g05620 expressed protein (68415.m00598) 440 Not regulated NC-NC-NC 265510_at At2g05630 autophagy 8d (APG8d) identical to autophagy 8d [Arabidopsis thaliana] GI: 19912157; contains Pfam profile PF02991: Microtubule associated protein 1A/1B, light chain 3 (68415.m00599) 441 Not regulated NC-NC-NC 265538_at At2g15860 expressed protein and genefinder (68415.m01818) 442 Not regulated NC-NC-NC 265495_at At2g15695 expressed protein contains Pfam PF05705: Eukaryotic protein of unknown function (DUF829) (68415.m01797) 443 Not regulated NC-NC-NC 265474_at At2g15690 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat (68415.m01796) 444 Not regulated NC-NC-NC 265476_at At2g15570 thioredoxin M-type 3, chloroplast (TRX-M3) identical to SP|Q9SEU7 Thioredoxin M-type 3, chloroplast precursor (TRX-M3) {Arabidopsis thaliana} (68415.m01783) 445 Not regulated NC-NC-NC 265450_at At2g46620 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 (68415.m05815) 446 Not regulated NC-NC-NC 265456_at At2g46505 expressed protein (68415.m05794) 447 Not regulated NC-NC-NC 265457_at At2g46550 expressed protein (68415.m05807) 448 Not regulated NC-NC-NC 265458_at At2g46580 pyridoxine 5′-phosphate oxidase-related similar to pyridoxine 5′-phosphate oxidase (GI: 3237304) [Rattus norvegicus]; similar to pyridoxamine 5′-phosphate oxidase (GI: 22294052) [Thermosynechococcus elongatus BP-1] (68415.m05810) 449 Not regulated NC-NC-NC 265461_at At2g46500 phosphatidylinositol 3- and 4-kinase family protein/ubiquitin family protein contains INTERPRO: IPR000626 ubiquitin domain (68415.m05790) 450 Not regulated NC-NC-NC 265471_at At2g37130 peroxidase 21 (PER21) (P21) (PRXR5) identical to SP|Q42580 Peroxidase 21 precursor (EC 1.11.1.7) (Atperox P21) (PRXR5) (ATP2a/ATP2b) {Arabidopsis thaliana} (68415.m04555) 451 Not regulated NC-NC-NC 265416_at At2937120 DNA-binding S1FA family protein contains Pfam profile; PF04689 DNA binding protein S1FA (68415.m04554) 452 Not regulated NC-NC-NC 265417_at At2g20920 expressed protein (68415.m02467) 453 Not regulated NC-NC-NC 265419_at At2g20840 secretory carrier membrane protein (SCAMP) family protein contains Pfam domain, PF04144: SCAMP family (68415.m02456) 454 Not regulated NC-NC-NC 265426_at At2g20740 expressed protein (68415.m02436) 455 Not regulated NC-NC-NC 265442_at At2g20940 expressed protein (68415.m02469) 456 Not regulated NC-NC-NC 265415_at At2g20890 expressed protein (68415.m02462) 457 Not regulated NC-NC-NC 265385_at At2g20900 diacylglycerol kinase, putative contains INTERPRO domain, IPR001206, DAG-kinase catalytic domain (68415.m02463) 458 Not regulated NC-NC-NC 265386_at At2g20930 expressed protein (68415.m02468) 459 Not regulated NC-NC-NC 265390_at At2g20820 expressed protein (68415.m02450) 460 Not regulated NC-NC-NC 265391_at At2g20810 glycosyl transferase family 6 protein contains Pfam profile: PF01501 glycosyl transferase family 6 (68415.m02448) 461 Not regulated NC-NC-NC 265392_at At2g20860 lipoic acid synthase (LIP1) identical to gi: 3928758 contains Pfam profile PF04055: radical SAM domain protein (68415.m02458) 462 Not regulated NC-NC-NC 265393_at At2g20830 expressed protein weak similarity to formiminotransferase cyclodeaminase (GI: 3980064) [Gallus gallus] (68415.m02453) 463 Not regulated NC-NC-NC 265394_at At2g20725 CAAX amino terminal protease family protein contains Pfam profile PF02517 CAAX amino terminal protease family protein (68415.m02435) 464 Not regulated NC-NC-NC 265402_at At2g10950 BSD domain-containing protein contains Pfam profile PF03909: BSD domain (68415.m01169) 465 Not regulated NC-NC-NC 265382_at At2g16790 shikimate kinase family protein similar to thermosensitive glucokinase from Escherichia coli [SP|P39208] [SP|P46859]; contains Pfam profile PF01202: shikimate kinase (68415.m01925) 466 Not regulated NC-NC-NC 265352_at At2g16600 peptidyl-prolyl cis-trans isomerase, cytosolic/cydophilin/rotamase (ROC3) identical to cytosotic cyclophilin [Arabidopsis thaliana] GI: 1305455 (68415.m01906) 467 Not regulated NC-NC-NC 265354_at At2g16700 actin-depolymerizing factor 5 (ADF5) identical to SP|Q9ZNT3 Actin-depolymerizing factor 5 (ADF-5) (AtADF5) {Arabidopsis thaliana} (68415.m01916) 468 Not regulated NC-NC-NC 265356_at At2g16595 translocon-associated protein (TRAP), putative similar to Swiss-Prot: P45434 translocon-associated protein, alpha subunit precursor (TRAP-alpha, Signal sequence receptor alpha subunit, SSR-alpha) [Arabidopsis thaliana] (68415.m01904) 469 Not regulated NC-NC-NC 265357_at At2g16740 ubiquilin-conjugating enzyme, putative strong similarity to SP|P35133 Ubiquitin-conjugating enzyme E2-17 kDa 10 (EC 6.3.2.19) (Ubiquitin-protein ligase 10) (Ubiquitin carrier protein 10) (Arabidopsis thaliana); contains Pfam profile PF00179: Ubiquitin- conjugating enzyme (68415.m01920) 470 Not regulated NC-NC-NC 265374_at At2g06520 membrane protein, putative contains 2 transmembrane domains; (68415.m00723) 471 Not regulated NC-NC-NC 265375_at At2g06530 SNF7 family protein contains Pfam domain, PF03357: SNF7 family (68415.m00724) 472 Not regulated NC-NC-NC 265334_at At2g18370 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to lipid-transfer protein [Nicotiana glauca] GI: 6782436; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 (68415.m02140) 473 Not regulated NC-NC-NC 265338_at At2g18400 ribosomal protein L6 family protein (68415.m02143) 474 Not regulated NC-NC-NC 265340_at At2g18330 AAA-type ATPase family protein contains Pfam profile: PF00004 ATPase family associated with various cellular activities (AAA) (68415.m02136) 475 Not regulated NC-NC-NC 265319_at At2g22670 auxin-responsive protein/indoleacetic acid-induced protein 8 (IAA8) identical to SP|Q38826 Auxin-responsive protein IAA8 (Indoleacetic acid-induced protein 8) {Arabidopsis thaliana} (68415.m02686) 476 Not regulated NC-NC-NC 265289_at At2g22690 expressed protein (68415.m02689) 477 Not regulated NC-NC-NC 265291_at At2g22720 expressed protein (68415.m02691) 478 Not regulated NC-NC-NC 265307_at At2g20310 expressed protein (68415.m02372) 479 Not regulated NC-NC-NC 265284_at At2g20230 expressed protein (68415.m02364) 480 Not regulated NC-NC-NC 265288_at At2g20270 glutaredoxin family protein contains glutaredoxin domain, Pfam: PF00462 (68415.m02368) 481 Not regulated NC-NC-NC 265258_at At2g20390 expressed protein (68415.m02380) 482 Not regulated NC-NC-NC 265259_at At2g20330 transducin family protein/WD-40 repeat family protein similar to Transcriptional repressor rco-1 (SP: P78706) [Neurospora crassa]; similar to TUP1(GB: AF079369); contains 6 WD-40 repeats (PF00400) (68415.m02374) 483 Not regulated NC-NC-NC 265265_at At2g42900 expressed protein (68415.m05314) 484 Not regulated NC-NC-NC 265266_at At2g42890 RNA recognition motif (RRM)-containing protein (68415.m05311) 485 Not regulated NC-NC-NC 265270_at At2g42910 ribose-phosphate pyrophosphokinase 4/phosphoribosyl diphosphate synthetase 4 (PRS4) identical to phosphoribosyl diphosphate synthase (prs4) [Arabidopsis thaliana] GI: 4902472 (68415.m05316) 486 Not regulated NC-NC-NC 265274_at At2g28450 zinc finger (CCCH-type) family protein contains Pfam domain, PF00842: Zinc finger C-x8-C-x5-C-x3-H type (and similar) (68415.m03456) 487 Not regulated NC-NC-NC 265281_at At2g28370 expressed protein contains Pfam PF04535: Domain of unknown function (DUF588); similar to putative ethylene responsive element binding protein (GI: 22135858) [Arabidopsis thaliana] (68415.m03448) 488 Not regulated NC-NC-NC 265256_at At2g28390 SAND family protein similar to Sand (GI: 3928166) [Takifugu rubripes]; contains Pfam PF03164: SAND family protein (68415.m03450) 489 Not regulated NC-NC-NC 265226_at At2g28430 expressed protein (68415.m03454) 490 Not regulated NC-NC-NC 265228_s_at At2g07698 ATP synthase alpha chain, mitochondrial, putative very strong similarity to SP|P23413 ATP synthase alpha chain, mitochondrial (EC 3.6.3.14) {Brassica campestris}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain (68415.m00949) 491 Not regulated NC-NC-NC 265230_s_at At2g07707 hypothetical protein contains Pfam profile PF02328: YMF19 hypothetical plant mitochondrial protein (68415.m00957) 492 Not regulated NC-NC-NC 285247_at At2g43030 ribosomal protein L3 family protein contains Pfam profile PF00297: ribosomal protein L3 (68415.m05340) 493 Not regulated NC-NC-NC 265248_at At2g43010 phytochrome-interacting factor 4 (PIF4)/basic helix-loop-helix protein 9 (bHLH9)/short under red-light 2 (SRL2) identical to SP|Q8W2F3 Phytochrome-interacting factor 4 (Basic helix-loop-helix protein 9) (bHLH9) (Short under red-light 2) {Arabidopsis thaliana}; supporting cDNA gi|18026965|gb|AF251694.1|AF251694 (68415.m05337) 494 Not regulated NC-NC-NC 265252_at At2g01980 sodium proton exchanger, putative (NHX7) (SOS1) identical to putative Na+/H+ antiporter SOS1 [Arabidopsis thaliana] gi|8515714|gb|AAF76139; Member of The Monovalent Cation:Proton Antiporter (CPA1) Family, PMID: 11500563 (68415.m00133) 495 Not regulated NC-NC-NC 265219_at At2g02050 NADH-ubiquinone oxidoreductase B18 subunit, putative contains Pfam PF05676: NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7); similar to NADH-ubiquinone oxidoreductase B18 subunit (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-B18) (CI-B18) (Cell adhesion protein SQM1) (Swiss-Prot: P17568) [Homo sapiens]; similar to NADH:ubiquinoe oxidoreductase NDUFB7 subunit (GI: 9651635) [Homo sapiens] (68415.m00140) 496 Not regulated NC-NC-NC 265220_at At2g02040 peptide transporter (PTR2-B)/oligopeptide transporter 1-1, putative (OPT1-1) identical to peptide transporter PTR2-B SP: P46032 from [Arabidopsis thaliana]; contains Pfam profile: PF00854 POT family; identical to cDNA NT1 GI: 510237 (68415.m00139) 497 Not regulated NC-NC-NC 265203_at At2g38630 expressed protein contains Pfam profile: PF01925 domain of unknown function DUF81 (68415.m04492) 498 Not regulated NC-NC-NC 265210_at At2g38620 60S ribosomal protein L24 (RPL24A) (68415.m04490) 499 Not regulated NC-NC-NC 265212_at At1g05030 hexose transporter, putative similar to hexose transporters from Nicotiana tabacum (GI: 8347244), Solanum tuberosum (GI: 8347246), Arabidopsis thaliana (GI: 8347250); contains Pfam profile PF00083: major facilitator superfamily protein (68414.m00504) 500 Not regulated NC-NC-NC 265214_at At1g05000 tyrosine specific protein phosphatase family protein contains tyrosine specific protein phosphatases active site, PROSITE: PS00383 (68414.m00501) 501 Not regulated NC-NC-NC 265218_at At1g05050 502 Not regulated NC-NC-NC 265192_at At1g05060 expressed protein (68414.m00507) 503 Not regulated NC-NC-NC 265193_at At1g05070 expressed protein (68414.m00509) 504 Not regulated NC-NC-NC 265172_at At1g23820 spermidine synthase 1 (SPDSYN1)/putrescine aminopropyltransferase 1 identical to SP|Q9ZUB3 Spermidine synthase 1 (EC 2.5.1.16) (Putrescine aminopropyltransferase 1) (SPDSY 1) {Arabidopsis thaliana} (68414.m03004) 505 Not regulated NC-NC-NC 265183_at At1g23750 DNA-binding protein-related contains weak similarity to G-quartet DNA binding protein 3 [Tetrahymena thermophila] gi|4583503|gb|AAD25098 (68414.m02997) 506 Not regulated NC-NC-NC 265184_at At1g23710 expressed protein (68414.m02993) 507 Not regulated NC-NC-NC 265187_at At1g23490 ADP-ribosylation factor identical to SP: Q9SRC3 ADP-ribosylation factor 1-like [Arabidopsis thaliana], ADP-ribosylation factor GI: 166586 [Arabidopsis thaliana] (68414.m02948) 508 Not regulated NC-NC-NC 265188_at At1g23800 aldehyde dehydrogenase, mitochondrial (ALDH3) nearly identical to mitochondrial aldehyde dehydrogenase ALDH3 [Arabidopsis thaliana] gi|19850249|gb|AAL99612; contains Pfam profile PF00171: aldehyde dehydrogenase (NAD) family protein (68414.m03002) 509 Not regulated NC-NC-NC 265190_at At1g23780 F-box family protein contains Pfam PF00646: F-box domain: similar to SP: Q9Y3I1 F-box only protein 7 {Homo sapiens}; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1: At5g67250 (68414.m03000) 510 Not regulated NC-NC-NC 265132_at At1g23830 expressed protein (68414.m03006) 511 Not regulated NC-NC-NC 265148_at At1g51160 synbindin, putative similar to Swiss-Prot: Q9ES56 synbindin (TRS23 homolog) [Mus musculus] (68414.m05752) 512 Not regulated NC-NC-NC 265150_at At1g51200 zinc finger (AN1-like) family protein contains Pfam domains, PF01428: AN1-like Zinc finger and PF01754: A20-like zinc finger (68414.m05759) 513 Not regulated NC-NC-NC 265162_at At1g30910 molybdenum cofactor sulfurase family protein weak similarity to molybdenum cofactor sulfurase (LOS5/ABA3) [Arabidopsis thaliana] GI: 15407262; contains Pfam profiles PF03476: MOSC N-terminal beta barrel domain, PF03473: MOSC domain (68414.m03781) 514 Not regulated NC-NC-NC 265129_at At1g30970 zinc finger (C2H2 type) family protein contains Pfam domain PF00096: Zinc finger, C2H2 type (68414.m03792) 515 Not regulated NC-NC-NC 265130_at At1g30890 integral membrane HRF1 family protein contains Pfam domain PF03878: Hrf1 family (68414.m03779) 516 Not regulated NC-NC-NC 265101_at At1g30880 expressed protein similar to ESTs gb|R30049 and gb|T46176 (68414.m03778) 517 Not regulated NC-NC-NC 265102_at At1g30870 cationic peroxidase, putative similar to cationic peroxidase (gi|1232069); similar to EST gb|AI100412 (68414.m03776) 518 Not regulated NC-NC-NC 265113_at At1g62460 519 Not regulated NC-NC-NC 265117_at At1g62500 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to auxin down regulated GB: X69640 GI: 296442 from [Glycine max]; contains Pfam profile PF00234: Protease inhibitor/seed storage/LTP family (68414.m07052) 520 Not regulated NC-NC-NC 265121_at At1g62560 flavin-containing monooxygenase family protein/FMO family protein similar to flavin-containing monooxygenase GB: AAA21178 GI: 349534 SP|P32417 from [Oryctolagus cuniculus]; contains Pfam profile PF00743 Flavin-binding monooxygenase-like (68414.m07058) 521 Not regulated NC-NC-NC 265071_at At1g55520 transcription initiation factor IID-2 (TFIID-2)/TATA-box factor 2/TATA sequence-binding protein 2 (TBP2) identical to Swiss- Prot: P28148|TF22_ARATH Transcription initiation factor TFIID-2 (TATA-box factor 2) (TATA sequence-binding protein 2) (TBP-2) [Arabidopsis thaliana] (68414.m06351) 522 Not regulated NC-NC-NC 265073_at At1g55480 expressed protein (68414.m06346) 523 Not regulated NC-NC-NC 265092_at At1g03910 expressed protein low similarity to cactin [Drosophila melanogaster] GI: 7673675; expression supported by MPSS (68414.m00376) 524 Not regulated NC-NC-NC 265036_at At1g04080 hydroxyproline-rich glycoprotein family protein Contains similarity to pre-mRNA processing protein PRP39 gp L29224 from S. cerevisiae. ESTs gb|R64908 and gb|T88158, gb|N38703 and gb|AA651043 come from this gene (68414.m00396) 525 Not regulated NC-NC-NC 265037_at At1g03860 prohibitin, putative similar to SP|P24142 Prohibitin (B-cell receptor associated protein 32) (BAP 32) {Rattus norvegicus}; contains Pfam profile PF01145: SPFH domain/Band 7 family (68414.m00368) 526 Not regulated NC-NC-NC 265043_at At1g03900 expressed protein (68414.m00374) 527 Not regulated NC-NC-NC 265048_at At1g52050 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI: 2997767; contains Pfam profile PF01419 jacalin-like lectin domain (68414.m05872) 528 Not regulated NC-NC-NC 265057_at At1g52140 expressed protein (68414.m05883) 529 Not regulated NC-NC-NC 265032_at At1g61580 60S ribosomal protein L3 (RPL3B) identical to ribosomal protein GI: 806279 from [Arabidopsis thaliana] (68414.m06939) 530 Not regulated NC-NC-NC 265033_at At1g61520 chlorophyll A-B binding protein/LHCI type III (LHCA3.1) nearly identical to PSI type III chlorophyll a/b-binding protein GI: 430947; contains Pfam profile: PF00504 chlorophyll A-B binding protein; similar to PSI type III chlorophyll a/b-binding protein GI: 430947 from [Arabidopsis thaliana] (68414.m06931) 531 Not regulated NC-NC-NC 265035_at At1g61620 expressed protein contains Pfam profile: PF01363 FYVE zinc finger (68414.m06943) 532 Not regulated NC-NC-NC 265005_at At1g61667 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538 (68414.m06953) 533 Not regulated NC-NC-NC 265006_at At1g61570 mitochondrial import inner membrane translocase (TIM13) identical to mitochondrial import inner membrane translocase subunit Tim13 [Arabidopsis thaliana] Swiss-Prot: Q9XH48; contains Pfam domain, PF02953: Tim10/DDP family zinc finger (68414.m06938) 534 Not regulated NC-NC-NC 265013_at At1g24460 myosin-related contains TIGRFAM TIGR01612: reticulocyte binding protein; similar to Myosin heavy chain, non-muscle (Zipper protein) (Myosin II) (SP: Q99323) {Drosophila melanogaster} similar to EST gb|T76116 (68414.m03081) 535 Not regulated NC-NC-NC 265014_at At1g24430 transferase family protein similar to deacetylvindoline 4-O-acetyltransferase from Catharanthus roseus GI: 4091808 GB: AAC99311, acetyl CoA:benzylalcohol acetyltransferase Clarkia breweri GI: 3170250, acetyl-CoA:benzylalcohol acetyltranferase Clarkia concinna GI: 6166328: contains Pfam profile PF02458 transferase family (68414.m03076) 536 Not regulated NC-NC-NC 265021_at At1g24610 SET domain-containing protein low similarity to SP|Q43088 Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N- methyltransferase, chloroplast precursor (EC 2.1.1.127) {Pisum sativum}; contains Pfam profile PF00856: SET domain (68414.m03096) 537 Not regulated NC-NC-NC 265025_at At1g24575 expressed protein (68414.m03093) 538 Not regulated NC-NC-NC 265027_at At1g24450 ribonuclease III family protein contains similarity to Swiss-Prot: P51837 ribonuclease III (EC 3.1.26.3) (RNase III) [Coxiella burnetii] (68414.m03080) 539 Not regulated NC-NC-NC 264977_at At1g27090 glycine-rich protein (68414.m03302) 540 Not regulated NC-NC-NC 264980_at At1g27190 leucine-rich repeat transmembrane protein kinase, putative similar to CLV1 receptor kinase GB: AAB58929 GI: 2160756 from [Arabidopsis thaliana] (68414.m03312) 541 Not regulated NC-NC-NC 264984_at At1g27000 bZIP family transcription factor (68414.m03292) 542 Not regulated NC-NC-NC 264990_at At1g27210 expressed protein (68414.m03314) 543 Not regulated NC-NC-NC 264996_at At1g67230 expressed protein (68414.m07652) 544 Not regulated NC-NC-NC 264998_at At1g67330 expressed protein contains Pfam profile PF04669: Protein of unknown function (DUF579) (68414.m07664) 545 Not regulated NC-NC-NC 265001_at At1g67350 expressed protein contains similarity to MHC class II antigen GI: 9502037 from [Aotus nancymaae] (68414.m07666) 546 Not regulated NC-NC-NC 264970_at At1g67280 lactoylglutathione lyase, putative/glyoxalase I, putative similar to putative lactoylglutathione lyase SP: Q39366, GI: 2494843 from [Brassica oleracea] (68414.m07657) 547 Not regulated NC-NC-NC 264942_at At1g67340 zinc finger (MYND type) family protein/F-box family protein (68414.m07665) 548 Not regulated NC-NC-NC 264944_at At1g76940 RNA recognition motif (RRM)-containing protein contains Pfam PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); similar to RNA-binding protein with multiple splicing homolog (RBP-MS) (HEart, RRM Expressed Sequence) (Hermes) (Swiss-Prot: Q9YGI5) [Xenopus laevis]; similar to RNA-binding protein with multiple splicing (RBP-MS) (Swiss-Prot: Q93062) [Homo sapiens] (68414.m08957) 549 Not regulated NC-NC-NC 264952_at At1g76900 F-box family protein/tubby family protein similar to Tubby protein (SP: P50586) {Mus musculus}; similar to Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein (GI: 6730158) [Mus musculus]; similar to Tubby related protein 1 (Tubby-like protein 1) (Swiss-Prot: O00294) [Homo sapiens]; similar to phosphodiesterase (GI: 467578) [Mus musculus]; contains Pfam profile: PF01167: Tub family; contains Pfam PF00646: F-box domain (68414.m08949) 550 Not regulated NC-NC-NC 264954_at At1g77060 mutase family protein similar to carboxyvinyl-carboxyphosphonate phosphorylmutase GB: O49290 from [Arabidopsis thaliana]; similar to carboxyphosphonoenolpyruvate mutase (GI: 47149) [Streptomyces hygroscopicus]; contains Prosite PS00161: Isocitrate lyase signature (68414.m08972) 551 Not regulated NC-NC-NC 264955_at At1g76920 F-box family protein (FBX3) contains similarity to stamina pistilloidia GI: 4101570, the pea ortholog of Fim and UFO from [Pisum sativum] (68414.m08954) 552 Not regulated NC-NC-NC 264959_at At1g77090 thylakoid lumenal 29.8 kDa protein identical to SP|O49292|TL30_ARATH (Arabidopsis thaliana); contains a PsbP domain AF370571; SIMILAR TO GI: 13926195-F22K20.16 (68414.m08978) 553 Not regulated NC-NC-NC 264916_at At1g60810 ATP citrate-lyase-related similar to ATP citrate-lyase GI: 949989 from [Rattus norvegicus] (68414.m06845) 554 Not regulated NC-NC-NC 264922_s_at At1g60830 U2 snRNP auxiliary factor large subunit, putative similar to GI: 3850823 from (Nicotiana plumbaginifolia) (J. Biol. Chem. 273 (51), 34603-34610 (1998)) (68414.m06846) 555 Not regulated NC-NC-NC 264928_at At1g60710 aldo/keto reductase family protein contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family (68414.m06834) 556 Not regulated NC-NC-NC 264935_at At1g61150 expressed protein similar to Protein C20orf11 (Swiss-Prot: Q9NWU2) [Homo sapiens] (68414.m06889) 557 Not regulated NC-NC-NC 264936_at At1g61140 SNF2 domain-containing protein/helicase domain-containing protein/zinc finger protein-related similar to ATPase [Homo sapiens] GI: 531196; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger) (68414.m06888) 558 Not regulated NC-NC-NC 264883_s_at At1g61250 secretory carrier membrane protein (SCAMP) family protein (SC3) contains Pfam domain, PF04144: SCAMP family (68414.m06902) 559 Not regulated NC-NC-NC 264894_at At1g23040 hydroxyproline-rich glycoprotein family protein contains proline-rich domains, INTERPRO: IPR000694 (68414.m02878) 560 Not regulated NC-NC-NC 264897_at At1g23220 dynein light chain type 1 family protein similar to SP|O02414 Dynein light chain LC6, flagellar outer arm {Anthocidaris crassispina}; contains Pfam profile PF01221: Dynein light chain type 1 (68414.m02904) 561 Not regulated NC-NC-NC 264904_s_at At2g17420 thioredoxin reductase 2/NADPH-dependent thioredoxin reductase 2 (NTR2) identical to SP|Q39242 (68415.m02010) 562 Not regulated NC-NC-NC 264908_at At2g17440 leucine-rich repeat family protein contains Pfam PF00560: Leucine Rich Repeats (68415.m02012) 563 Not regulated NC-NC-NC 264875_at At2g17390 ankyrin repeat family protein contains ankyrin repeats, Pfam: PF00023 (68415. m02008) 564 Not regulated NC-NC-NC 264847_at At2g17380 clathrin assembly protein AP19 identical to clathrin assembly protein AP19 GI: 2231698 from [Arabidopsis thaliana] (68415.m02007) 565 Not regulated NC-NC-NC 264848_at At2g17350 expressed protein (68415.m02004) 566 Not regulated NC-NC-NC 264850_at At2g17340 pantothenate kinase-related contains Pfam domain, PF01937: Protein of unknown function; supported by tandem duplication of pantothenate kinase-related protein (TIGR_Ath1: At2g17320) [Arabidopsis thaliana] (68415.m02003) 567 Not regulated NC-NC-NC 264854_at At2g17450 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) (68415.m02014) 568 Not regulated NC-NC-NC 264862_at At1g24330 armadillo/beta-catenin repeat family protein/U-box domain-containing family protein contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain (68414.m03069) 569 Not regulated NC-NC-NC 264865_at At1g24120 DNAJ heat shock protein, putative similar to Altered Response to Gravity [Arabidopsis thaliana] GI: 4249662; contains Pfam profile PF00226 DnaJ domain (68414.m03043) 570 Not regulated NC-NC-NC 264869_at At1g24350 expressed protein contains Pfam domain, PF02681: Uncharacterized BCR, COG1963 (68414.m03071) 571 Not regulated NC-NC-NC 264871_at At1g24180 pyruvate dehydrogenase E1 component alpha subunit, mitochondrial, putative similar to SP|P52901 Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor (EC 1.2.4.1) (PDHE1-A) {Arabidopsis thaliana}; contains Pfam profile PF00676: Dehydrogenase E1 component (68414.m03050) 572 Not regulated NC-NC-NC 264818_at At1g03530 expressed protein similar to hypothetical protein GB: O14360 (68414.m00334) 573 Not regulated NC-NC-NC 264820_at At1g03475 coproporphyrinogen III oxidase, putative/coproporphyrinogenase, putative/coprogen oxidase, putative similar to coproporphyrinogen III oxidase, chloroplast [precursor] from Glycine max [SP|P35055], Nicotiana tabacum [SP|Q42946], Hordeum vulgare [SP|Q42840], ESTs gb|AA586260 and dbj|D48620; contains Pfam domain coproporphyrinogen III oxidase, aerobic [PF01218] (68414.m00329) 574 Not regulated NC-NC-NC 264824_at At1g03420 expressed protein similar to gb|T45484, emb|Z30724, and emb|Z30531 (68414.m00322) 575 Not regulated NC-NC-NC 264828_at At1g03380 expressed protein (68414.m00317) 576 Not regulated NC-NC-NC 264834_at At1g03730 expressed protein similar to ESTs gb|AA605440 and gb|H37232 (68414.m00353) 577 Not regulated NC-NC-NC 264836_at At1g03610 expressed protein (68414.m00341) 578 Not regulated NC-NC-NC 264837_at At1g03600 photosystem II family protein similar to SP: P74367 {Synechocystis sp.}; similar to ESTs emb|Z27038, gb|AA451546, emb|Z29876, gb|T45359 and gp|R90316 (68414.m00340) 579 Not regulated NC-NC-NC 264838_at At1g03430 two-component phosphorelay mediator, putative strong similarity to ATHP1 [Arabidopsis thatiana] GI: 4156241 (68414.m00323) 580 Not regulated NC-NC-NC 264840_at At1g03440 leucine-rich repeat family protein contains leucine rich-repeat domains Pfam: PF00560, INTERPRO: IPR001611 (68414.m00324) 581 Not regulated NC-NC-NC 264843_at At1g03400 2-oxoglutarate-dependent dioxygenase, putative similar to 2A6 (GI: 599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967); similar to ESTs emb|Z34690, gb|T04168, gb|H37738, gb|T76913, gb|T43801, amd gb|T21964 (68414.m00320) 582 Not regulated NC-NC-NC 264845_at At1g03675 583 Not regulated NC-NC-NC 264789_at At2g17870 cold-shock DNA-binding family protein contains Pfam domains, PF00313: ‘Cold-shock’ DNA-binding domain and PF00098: Zinc knuckle (68415.m02070) 584 Not regulated NC-NC-NC 264796_at At1g08690 585 Not regulated NC-NC-NC 264799_at At1g08550 violaxanthin de-epoxidase precursor, putative (AVDE1) similar to EST gb|N37612 (68414.m00948) 586 Not regulated NC-NC-NC 264802_at At1g08560 syntaxin-related protein KNOLLE (KN)/syntaxin 111 (SYP111) identical to SP|Q42374 Syntaxin-related protein KNOLLE (Syntaxin 111) (AtSYP111) {Arabidopsis thaliana}; BAC F22O13 has a deletion of a cytosine at position 7887 (68414.m00949) 587 Not regulated NC-NC-NC 264803_at At1g08580 expressed protein (68414.m00951) 588 Not regulated NC-NC-NC 264807_at At1g08700 presenilin family protein similar to SP|P52166 Presenilin set-12 {Caenorhabditis elegans}; contains Pfam profile PF01080: Presenilin (68414.m00966) 589 Not regulated NC-NC-NC 264808_at At1g08770 prenylated rab acceptor (PRA1) family protein weak similarity to prenylated Rab acceptor 1 (PRA1) [Homo sapiens] GI: 4877285; contains Pfam profile PF03208: Prenylated rab acceptor (PRA1) (68414.m00976) 590 Not regulated NC-NC-NC 264809_at At1g08830 superoxide dismutase [Cu—Zn] (SODCC)/copper/zinc superoxide dismutase (CSD1) identical to SWISS-PROT: P24704 (68414.m00983) 591 Not regulated NC-NC-NC 264810_at At1g08750 GPI-anchor transamidase, putative similar to SP|P49018 GPI-anchor transamidase (EC 3.—.—.—) (GPI transamidase) {Saccharomyces cerevisiae}; contains Pfam profile PF01650: Peptidase C13 family (68414.m00972) 592 Not regulated NC-NC-NC 264811_at At1g08640 expressed protein (68414.m00959) 593 Not regulated NC-NC-NC 264778_at At1g08780 prefoldin, putative similar to Swiss-Prot: Q9NQP4 prefoldin subunit 4 (Protein C-1) [Homo sapiens] (68414.m00977) 594 Not regulated NC-NC-NC 264782_at At1g08810 myb family transcription factor (MYB60) (68414.m00980) 595 Not regulated NC-NC-NC 264767_at At1g61380 S-locus protein kinase, putative similar to Ki domain interacting kinase 1 [Zea mays] gi|2735017|gb|AAB93834; contains S-locus glycoprotein family domain, Pfam: PF00954 (68414.m06917) 596 Not regulated NC-NC-NC 264772_at At1g22930 T-complex protein 11 contains Pfam PF05794: T-complex protein 11 (68414.m02866) 597 Not regulated NC-NC-NC 264724_at At1g22920 COP9 signalosome subunit 5B/CSN subunit 5B (CSN5B)/c-JUN coactivator protein AJH1, putative (AJH1) COP9 complex subunit CSN5-1; identical to Arabidopsis homologs of a c-Jun coactivator AJH1 GI: 3641314 from [Arabidopsis thaliana]; identical to cDNA CSN complex subunit 5B (CSN5B) GI: 18056662; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family (68414.m02864) 598 Not regulated NC-NC-NC 264725_at At1g22885 expressed protein (68414.m02858) 599 Not regulated NC-NC-NC 264727_at At1g22840 cytochrome c, putative similar to cytochrome c [Pumpkin, Winter squash] SWISS-PROT: P00051 (68414.m02852) 600 Not regulated NC-NC-NC 264728_at At1g22850 expressed protein (68414.m02853) 601 Not regulated NC-NC-NC 264736_at At1g62200 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family; contains non- consensus GA donor site at intron 4 (68414.m07016) 602 Not regulated NC-NC-NC 264716_at At1g70170 matrixin family protein similar to SP|P29136 Metalloendoproteinase 1 precursor (EC 3.4.24.—) (SMEP1) {Glycine max}; contains InterPro accession IPR001818: Matrixin (68414.m08074) 603 Not regulated NC-NC-NC 264692_at At1g70000 DNA-binding family protein contains Pfam domains, PF00249: Myb-like DNA-binding domain and PF00098: Zinc knuckle (68414.m08056) 604 Not regulated NC-NC-NC 264699_at At1g69980 expressed protein (68414.m08054) 605 Not regulated NC-NC-NC 264700_at At1g70100 expressed protein (68414.m08065) 606 Not regulated NC-NC-NC 264701_at At1g70160 expressed protein similar to hypothetical protein GI: 4455225 from [Arabidopsis thaliana] (68414.m08073) 607 Not regulated NC-NC-NC 264703_at At1g69960 serine/threonine protein phosphatase PP2A-5 catalytic subunit (PP2A5) identical to SP|Q04951|P2A5_ARATH Serine/threonine protein phosphatase PP2A-5 catalytic subunit (EC 3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile PF00149: Ser/Thr protein phosphatase (68414.m08051) 608 Not regulated NC-NC-NC 264705_at At1g09620 tRNA synthetase class I (I, L, M and V) family protein similar to cytosolic leucyl-tRNA synthetase [Candida albicans] GI: 9858190; contains Pfam profile PF00133: tRNA synthetases class I (I, L, M and V) (68414.m01079) 609 Not regulated NC-NC-NC 264708_at At1g09740 ethylene-responsive protein, putative similar to ER6 protein [Lycopersicon esculentum] GI: 5669654; contains Pfam profile PF00582: universal stress protein family (68414.m01093) 610 Not regulated NC-NC-NC 264709_at At1g09770 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain (68414.m01096) 611 Not regulated NC-NC-NC 264687_at At1g09850 cysteine protease, papain-like (XBCP3) identical to papain-like cysteine peptidase XBCP3 GI: 14600257 from [Arabidopsis thaliana]; contains Pfam profiles PF00112: Papain family cysteine protease and PF00396: Granulin (68414.m01109) 612 Not regulated NC-NC-NC 264664_at At1g09660 KH domain-containing quaking protein, putative similar to GB: AAC67357 (68414.m01084) 613 Not regulated NC-NC-NC 264668_at At1g09780 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative/phosphoglyceromutase, putative strong similarity to SP|Q42908 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) {Mesembryanthemum crystallinum}; contains Pfam profile PF01676: Metalloenzyme superfamily (68414.m01097) 614 Not regulated NC-NC-NC 264669_at At1g09630 Ras-related GTP-binding protein, putative similar to GTP-binding protein GI: 1370146 from [Lotus japonicus] (68414.m01080) 615 Not regulated NC-NC-NC 264670_s_at At1g09640 elongation factor 1B-gamma, putative/eEF-1B gamma, putative Similar to elongation factor 1-gamma (gb|EF1G_XENLA). ESTs gb|T20564, gb|T45940, gb|T04527 come from this gene (68414.m01081) 616 Not regulated NC-NC-NC 264676_at At1g09870 histidine add phosphatase family protein contains Pfam profile PF00328: Histidine acid phosphatase; similar to multiple inositol polyphosphate phosphatase (GI: 4105496)[Mus musculus]; EST gb|R64758 comes from this gene (68414.m01111) 617 Not regulated NC-NC-NC 264679_s_at At1g09690 60S ribosomal protein L21 (RPL21C) Similar to ribosomal protein L21 (gb|L38826). ESTs gb|AA395597, gb|ATTS5197 come from this gene (68414.m01088) 618 Not regulated NC-NC-NC 264685_at At1g65610 endo-1,4-beta-glucanase, putative/cellulase, putative similar to endo-1,4-beta-glucanase GI: 2065530 from [Lycopersicon esculentum] (68414.m07442) 619 Not regulated NC-NC-NC 264627_at At1g65520 enoyl-CoA hydratase/isomerase family protein low similarity to enoyl-CoA hydratase [Escherichia coli]GI: 2764828, carnitine racemase SP|P31551 [Escherichia coli]; contains Pfam profile PF00378 enoyl-CoA hydratase/isomerase family protein (68414.m07434) 620 Not regulated NC-NC-NC 264639_at At1g65650 ubiquitin carboxyl-terminal hydrolase family 1 protein similar to 26S proteasome regulatory complex subunit p37A [Drosophila melanogaster] GI: 6434962; contains Pfam profile PF01088: Ubiquitin carboxyl-terminal hydrolase, family 1 (68414.m07448) 621 Not regulated NC-NC-NC 264641_at At1g09130 ATP-dependent Clp protease proteolytic subunit, putative similar to nClpP5 GI: 5360595 from [Arabidopsis thaliana] (68414.m01017) 622 Not regulated NC-NC-NC 264644_at At1g08960 cation exchanger, putative (CAX11) similar to sodium/calcium exchanger protein [Mus musculus] gi|13925861|gb|AAK49407; Ca2+:Cation Antiporter (CaCA) Family member PMID: 11500563 (68414.m00996) 623 Not regulated NC-NC-NC 264645_at At1g08940 phosphoglycerate/bisphosphoglycerate mutase family protein contains Pfam profile PF00300: phosphoglycerate mutase family (68414.m00995) 624 Not regulated NC-NC-NC 264649_at At1g09060 transcription factor jumonji (jmjC) domain-containing protein contains Pfam domain, PF02373: jmjC domain (68414.m01010) 625 Not regulated NC-NC-NC 264651_at At1g08880 histone H2A, putative Strong similarity to histone H2A Cicer arietinum SP|O65759, Picea abies SP|P35063; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4; ESTs gb|ATTS3874, gb|T46627, gb|T14194 come from this gene (68414.m00988) 626 Not regulated NC-NC-NC 264653_at At1g08980 amidase family protein similar to component of chloroplast outer membrane translocon Toc64 [Pisum sativum] GI: 7453538; contains Pfam profile PF01425: Amidase; supporting cDNA gi|11493701|gb|AF202077.1|AF202077 (68414.m01001) 627 Not regulated NC-NC-NC 264656_at At1g09010 glycoside hydrolase family 2 protein low similarity to mannosidase [gi: 5359712] from Cellulomonas fimi (68414.m01005) 628 Not regulated NC-NC-NC 264657_at At1g09100 26S protease regulatory subunit 6A, putative identical to SP: O04019 from [Arabidopsis thaliana] (68414.m01016) 629 Not regulated NC-NC-NC 264595_at At1g04750 synaptobrevin family protein similar to Vesicle-associated membrane protein 722 (AtVAMP722) Synaptobrevin-related protein 1 (SP: P47192) {Arabidopsis thaliana}; (68414.m00470) 630 Not regulated NC-NC-NC 284609_at At1g04530 expressed protein (68414.m00445) 631 Not regulated NC-NC-NC 264613_at At1g04640 biotin/lipoate A/B protein ligase family protein similar to lipoyltransferase (LIP2p) [Arabidopsis thaliana] GI: 15887052; contains Pfam profile PF03099: Biotin/lipoate A/B protein ligase family (68414.m00460) 632 Not regulated NC-NC-NC 264615_at At1g04590 expressed protein isofonn contains GG acceptor splice site at intron 7 (68414.m00452) 633 Not regulated NC-NC-NC 264619_at At2g17760 aspartyl protease family protein contains Eukaryotic and viral aspartyl proteases active site, PROSITE: PS00141 (68415.m02057) 634 Not regulated NC-NC-NC 264622_at At2g17790 vacuolar protein sorting-associated protein 35 family protein/VPS35 family protein similar to vacuolar protein sorting 35 [Mus musculus] GI: 11875394; contains Pfam profile PF03635: Vacuolar protein sorting-associated protein 35 (68415.m02062) 635 Not regulated NC-NC-NC 264591_at At2g17670 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat (68415.m02045) 636 Not regulated NC-NC-NC 264594_at At2g17640 serine O-acetyltransferase, putative (SAT-106) similar to Arabidopsis thaliana serine acetyltransferase GI: 905391 (68415.m02040) 637 Not regulated NC-NC-NC 264570_at At1g05350 thiF family protein low similarity to SP|P30138 Adenylyltransferase thiF (EC 2.7.7.—) {Escherichia coli}; contains Pfam profile PF00899: ThiF family (68414.m00542) 638 Not regulated NC-NC-NC 264575_at At1g05190 ribosomal protein L6 family protein Similar to Mycobacterium RipF (gb|Z84395). ESTs gb|T75785, gb|R30580, gb|T04698 come from this gene (68414.m00523) 639 Not regulated NC-NC-NC 264576_at At1g05360 expressed protein Similar to Arabidopsis hypothetical protein PID: e326839 (gb|297337) contains transmembrane domains (68414.m00543) 640 Not regulated NC-NC-NC 264579_at At1g05205 expressed protein (68414.m00525) 641 Not regulated NC-NC-NC 264584_at At1g05140 membrane-associated zinc metalloprotease, putative similar to Hypothetical zinc metalloprotease All3971 (SP: Q8YQ64) [strain PCC 7120] {Anabaena sp.}; Similar to Synechocystis hypothetical protein (gb|D80908); contains Pfam PF00595: PDZ domain (Also known as DHR or GLGF); contains TIGRFAM TIGR00054: membrane-associated zinc metalloprotease, putative (68414.m00517) 642 Not regulated NC-NC-NC 264585_at At1g05180 auxin-resistance protein AXR1 (AXR1) identical to SP|P42744 Auxin-resistance protein AXR1 {Arabidopsis thaliana}; contains Pfam profile PF00899: ThiF family; identical to cDNA ubiquitin activating enzyme E1-related protein (AXR1) GI: 304103 (68414.m00521) 643 Not regulated NC-NC-NC 264545_at At1g55670 photosystem I reaction center subunit V, chloroplast, putative/PSI-G, putative (PSAG) identical to SP|Q9S7N7; similar to SP|Q00327 Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) (Photosystem I 9 kDa protein) {Hordeum vulgare}; contains Pfam profile PF01241: Photosystem I psaG/psaK (68414.m06372) 644 Not regulated NC-NC-NC 264504_at At1g09430 ATP-citrate synthase (ATP-citrate (pro-S-)-lyase/citrate cleavage enzyme), putative similar to ATP-citrate-lyase (GI: 16648642) [Arabidopsis thaliana]; similar to ATP-citrate (pro-S-)-lyase (EC 4.1.3.8) (Citrate cleavage enzyme)(SP: Q91V92) {Mus musculus}; Location of EST gb|Z34587 (68414.m01055) 645 Not regulated NC-NC-NC 264510_at At1g09530 phytochrome interacting factor 3 (PIF3) identical to phytochrome interacting factor 3 (PIF3) GI: 3929585 from [Arabidopsis thaliana] (68414.m01068) 646 Not regulated NC-NC-NC 264515_at At1g10080 647 Not regulated NC-NC-NC 264523_at At1g10030 integral membrane family protein contains Pfam PF03694: Erg28 like protein (68414.m01131) 648 Not regulated NC-NC-NC 264529_at At1g30820 CTP synthase, putative/UTP-ammonia ligase, putative similar to SP|P17812 CTP synthase (EC 6.3.4.2) (UTP-ammonia ligase) {Homo sapiens}; contains Pfam profile PF00117: glutamine amidotransferase class-I; similar to ESTs gb|AA660762, gb|AA220982, dbj|AU008137, gb|AI054783, and gb|AA100804 (68414.m03768) 649 Not regulated NC-NC-NC 264474_s_at At1g67090 ribulose bisphosphate carboxylase small chain 1A/RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana} (68414.m07629) 650 Not regulated NC-NC-NC 264476_at At1g77130 glycogenin glucosyltransferase (glycogenin)-related contains similarity to glycogenin-1 from Mus musculus [SP|Q9R062], Rattus norvegicus [SP|O08730], Homo sapiens [SP|P46976] (68414.m08985) 651 Not regulated NC-NC-NC 264484_at At1g77260 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI: 15320410; contains Pfam profile PF03141: Putative methyltransferase (68414.m08996) 652 Not regulated NC-NC-NC 264438_at At1g27400 60S ribosomal protein L17 (RPL17A) similar to GB: P51413 from [Arabidopsis thaliana]; similar to ESTs gb|L33542 and gb|AA660016 (68414.m03340) 653 Not regulated NC-NC-NC 264439_at At1g27450 adenine phosphoribosyltransferase 1 (APT1) nearly identical to SP|P31186 Adenine phosphoribosyltransferase 1 (EC 2.4.2.7) (APRT) {Arabidopsis thaliana} (68414.m03346) 654 Not regulated NC-NC-NC 264440_at At1g27340 F-box family protein contains Pfam PF00646: F-box domain; similar to fim protein; similar to ESTs gb|T42445, gb|T76780, gb|AA650733, and emb|Z17748 (68414.m03330) 655 Not regulated NC-NC-NC 264442_at At1g27480 lecithin:cholesterol acyltransferase family protein/LACT family protein similar to LCAT-like lysophospholipase (LLPL) [Homo sapiens] GI: 4589720; contains Pfam profile PF02450: Lecithin:cholesterol acyltransferase {phosphatidylcholine-sterol acyltransferase} (68414.m03350) 656 Not regulated NC-NC-NC 264443_at At1g27385 expressed protein (68414.m03338) 657 Not regulated NC-NC-NC 264446_at At1g27310 nuclear transport factor 2 (NTF2), putative similar to Swiss-Prot: P33331 nuclear transport factor 2 (NTF-2) (Nuclear transport factor P10) [Saccharomyces cerevisiae] (68414.m03327) 658 Not regulated NC-NC-NC 264463_at At1g10150 expressed protein similar to ESTs gb|T20511, gb|T45308, gb|H36493, and gb|AA651176 (68414.m01144) 659 Not regulated NC-NC-NC 264467_at At1g10140 expressed protein similar to EST gb|AA598098 (68414.m01143) 660 Not regulated NC-NC-NC 264468_at At1g10310 short-chain dehydrogenase/reduclase (SDR) family protein contains INTERPRO family IPR002198 short-chain dehydrogenase/reductase (SDR) superfamily (68414.m01161) 661 Not regulated NC-NC-NC 264407_at At1g10180 expressed protein (68414.m01148) 662 Not regulated NC-NC-NC 264421_at At1g43170 60S ribosomal protein L3 (RPL3A) identical to ribosomal protein GI: 166858 from [Arabidopsis thaliana] (68414.m04974) 663 Not regulated NC-NC-NC 264422_at At1g43130 expressed protein contains Pfam domain, PF04367: Protein of unknown function (DUF502) (68414.m04968) 664 Not regulated NC-NC-NC 264424_at At1g61740 expressed protein contains Pfam profile: PF01925 domain of unknown function DUF81; identical to cDNA hypothetical protein, partial GI: 4079631 (68414.m06963) 665 Not regulated NC-NC-NC 264427_at At1g61770 DNAJ heat shock N-terminal domain-containing protein similar to SP|Q9UBS4 DnaJ homolog subfamily B member 11 precursor Homo sapiens; contains Pfam profile PF00226 DnaJ domain (68414.m06966) 666 Not regulated NC-NC-NC 264429_at At1g61670 expressed protein similar to membrane protein PTM1 precursor isolog GI: 1931644 from [Arabidopsis thaliana] (68414.m06956) 667 Not regulated NC-NC-NC 264399_at At1g61780 postsynaptic protein-related similar to postsynaptic protein CRIPT GI: 3098551 from [Rattus norvegicus] (68414.m06967) 668 Not regulated NC-NC-NC 264374_at At2g25180 two-component responsive regulator family protein/response regulator family protein contains Pfam profile: PF00072 response regulator receiver domain (68415.m03011) 669 Not regulated NC-NC-NC 264376_at At2g25070 protein phosphatase 2C, putative/PP2C, putative (68415.m02999) 670 Not regulated NC-NC-NC 284381_at At2g25100 ribonuclease HII family protein contains Pfam profile: PF01351 ribonuclease HII (68415.m03003) 671 Not regulated NC-NC-NC 264396_at At1g12050 fumarylacetoacetase, putative similar to fumarylacetoacetase (Fumarylacetoacetate hydrolase, Beta-diketonase, FAA)[Rattus norvegicus] SWISS-PROT: P25093 (68414.m01391) 672 Not regulated NC-NC-NC 264397_at At1g11820 glycosyl hydrolase family 17 protein similar to elicitor inducible chitinase Nt-SubE76 GI: 11071974 from [Nicotiana tabacum] (68414.m01358) 673 Not regulated NC-NC-NC 264373_at At1g11890 vesicle transport protein SEC22, putative identified as SEC22 by Raikhel, NV, et al. in Plant Physiol. 124: 1558-69 (2000); similar to vesicle trafficking protein gb|U91538 from Mus musculus; ESTs gb|F15494 and gb|F14097 come from this gene (68414.m01371) 674 Not regulated NC-NC-NC 264349_at At1g11930 alanine racemase family protein contains Pfam domain, PF01168: Alanine racemase, N-terminal domain (68414.m01378) 675 Not regulated NC-NC-NC 264350_at At1g11870 seryl-tRNA synthetase, putative/serine-tRNA ligase, putative similar to PIR|T03949 serine-tRNA lipase (EC 6.1.1.11) serS {Zea mays}; contains Pfam profiles PF00587: tRNA synthetase class II core domain (G, H, P, S and T), PF02403: Seryl-tRNA synthetase N-terminal domain (68414.m01367) 676 Not regulated NC-NC-NC 264351_at At1g03370 C2 domain-containing protein/GRAM domain-containing protein contains Pfam profiles PF00168: C2 domain; contains PF02893: GRAM domain; similar to Chain A, Crystal Structure Of Synaptotagmin III C2aC2B Length(GI: 6980525); similar to Synaptotagmin III (SytIII) (Swiss-Prot: P40748) [Rattus norvegicus] (68414.m00316) 677 Not regulated NC-NC-NC 264355_at At1g03210 phenazine biosynthesis PhzC/PhzF family protein contains Pfam profile: PF02567 phenazine biosynthesis-like protein (68414.m00299) 678 Not regulated NC-NC-NC 264357_at At1g03360 exonuclease family protein similar to Exosome complex exonuclease RRP4 (Ribosome RNA processing protein 4)(SP: P38792) {Saccharomyces cerevisiae} (68414.m00315) 679 Not regulated NC-NC-NC 264362_at At1g03290 expressed protein ESTs gb|H36966, gb|R65511, gb|T42324 and gb|T20569 come from this gene (68414.m00307) 680 Not regulated NC-NC-NC 264366_at At1g03250 expressed protein (68414.m00303) 681 Not regulated NC-NC-NC 264367_at At1g03350 BSD domain-containing protein contains Pfam profile PF03909: BSD domain (68414.m00314) 682 Not regulated NC-NC-NC 264337_at At1g70350 expressed protein (68414.m08093) 683 Not regulated NC-NC-NC 264340_at At1g70280 NHL repeat-containing protein contains Pfam profile PF01436: NHL repeat (68414.m08085) 684 Not regulated NC-NC-NC 264313_at At1g70410 carbonic anhydrase, putative/carbonate dehydratase, putative similar to SP|P42737 Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase 2) {Arabidopsis thaliana}; contains Pfam profile PF00484: Carbonic anhydrase (68414.m08099) 685 Not regulated NC-NC-NC 264317_at At1g70310 spermidine synthase 2 (SPDSYN2)/putrescine aminopropyltransferase 2 identical to SP|O48661 Spermidine synthase 2 (EC 2.5.1.16) (Putrescine aminopropyltransferase 2) (SPDSY 2) {Arabidopsis thaliana} (68414.m08089) 686 Not regulated NC-NC-NC 264322_at At1g04190 tetratricopeptide repeat (TPR)-containing protein low similarity to protein antigen LmSTI1 [Leishmania major] GI: 1698880; contains Pfam profile PF00515 TPR Domain; EST gb|Z47802 and gb|Z48402 come from this gene (68414.m00409) 687 Not regulated NC-NC-NC 264326_at At1g04230 expressed protein (68414.m00413) 688 Not regulated NC-NC-NC 264330_at At1g04120 ABC transporter family protein Strong similarity to MRP-like ABC transporter gb|U92650 from A. thaliana and canalicular multi-drug resistance protein gb|L49379 from Rattus norvegicus (68414.m00401) 689 Not regulated NC-NC-NC 264307_at At1g61900 expressed protein contains similarity to glutamic acid/alanine-rich protein GI: 6707830 from [Trypanosome congolense] (68414.m06983) 690 Not regulated NC-NC-NC 264289_at At1g61890 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI: 12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family (68414.m06982) 691 Not regulated NC-NC-NC 264300_at At1g78670 gamma-glutamyl hydrolase, putative/gamma-Glu-X carboxypeptidase, putative/conjugase, putative similar to gamma glutamyl hydrolase GI: 1679658 SP|P93164 from [Glycine max] (68414.m09170) 692 Not regulated NC-NC-NC 264303_s_at At1g78870 ubiquitin-conjugating enzyme, putative nearly identical to ubiquitin-conjugating enzyme E2 [Catharanthus roseus] GI: 5381319; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme (68414.m09193) 693 Not regulated NC-NC-NC 264306_at At1g78890 expressed protein (68414.m09196) 694 Not regulated NC-NC-NC 264248_at At1g78700 brassinosteroid signalling positive regulator-related contains similarity to BZR1 protein [Arabidopsis thaliana] gi|20270971|gb|AAM18490 (68414.m09173) 695 Not regulated NC-NC-NC 264250_at At1g78680 gamma-glutamyl hydrolase (GGH1)/gamma-Glu-X carboxypeptidase/conjugase identical to SP|O65355 Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH) {Arabidopsis thaliana} (68414.m09171) 696 Not regulated NC-NC-NC 264255_at At1g09140 SF2/ASF-like splicing modulator (SRP30) nearly identical to SF2/ASF-like splicing modulator Srp30 [Arabidopsis thaliana] GI: 4775270 (68414.m01018) 697 Not regulated NC-NC-NC 264256_at At1g09270 importin alpha-1 subunit, putative (IMPA4) similar to importin alpha-1 subunit (Karyopherin alpha-1 subunit, KAP alpha) [Arabidopsis thaliana] SWISS-PROT: Q96321 (68414.m01035) 698 Not regulated NC-NC-NC 264244_at At1g60440 eukaryotic pantothenate kinase family protein similar to pantothenate kinase GI: 4191500 from [Aspergillus nidulans]; contains Pfam profile PF03630: Fumble (68414.m06804) 699 Not regulated NC-NC-NC 264246_at At1g60140 glycosyl transferase family 20 protein/trehalose-phosphatase family protein contains Pfam profile: PF02358 trehalose- phosphatase (68414.m06775) 700 Not regulated NC-NC-NC 264219_at At1g60420 DC1 domain-containing protein contains Pfam domain PF03107: DC1 domain (68414.m06802) 701 Not regulated NC-NC-NC 264221_s_at At1g60170 pre-mRNA processing ribonucleoprotein binding region-containing protein similar to U4/U6 snRNP-associated 61 kDa protein [Homo sapiens] GI: 18249847; contains Pfam profile PF01798: Putative snoRNA binding domain (68414.m06778) 702 Not regulated NC-NC-NC 264229_at At1g67480 kelch repeat-containing F-box family protein similar to SKP1 interacting partner 6 [Arabidopsis thaliana] GI: 10716957; contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain (68414.m07685) 703 Not regulated NC-NC-NC 264233_at At1g67430 60S ribosomal protein L17 (RPL17B) similar to ribosomal protein GI: 19101 from [Hordeum vulgare] (68414.m07675) 704 Not regulated NC-NC-NC 264236_at At1g54680 expressed protein (68414.m06234) 705 Not regulated NC-NC-NC 264239_at At1g54770 expressed protein (68414.m06245) 706 Not regulated NC-NC-NC 264189_s_at At1g54630 acyl carrier protein 3, chloroplast (ACP-3) nearly identical to SP|P25702 Acyl carrier protein 3, chloroplast precursor (ACP) {Arabidopsis thaliana} (68414.m06230) 707 Not regulated NC-NC-NC 264190_at At1g54830 CCAAT-box binding transcription factor Hap5a, putative similar to heme activated protein GI: 6289057 from (Arabidopsis thaliana) GI: 14577940 CCAAT-binding protein subunit HAP5 {Hypocrea jecorina} similar to Transcription factor GB: CAA74053 GI: 2398533 from [Arabidopsis thaliana] similarity to transcription factor Hap5a similar to transcription factor Hap5a [Arabidopsis thaliana](GI: 6523090) (68414.m06251) 708 Not regulated NC-NC-NC 264192_at At1g54710 expressed protein contains 3 WD-40 repeats (PF00400) (1 weak) submitForm( ); (68414.m06237) 709 Not regulated NC-NC-NC 264193_at At1g54610 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain (68414.m06228) 710 Not regulated NC-NC-NC 264195_at At1g22690 gibberellin-responsive protein, putative similar to SP|P46688 Gibberellin-regulated protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF02704: Gibberellin regulated protein (68414.m02835) 711 Not regulated NC-NC-NC 264205_at At1g22790 expressed protein identical to hypothetical protein GB: CAA72910 (68414:m02847) 712 Not regulated NC-NC-NC 264207_at At1g22750 expressed protein (68414.m02842) 713 Not regulated NC-NC-NC 264210_at At1g22640 myb family transcription factor {MYB4} similar to myb-related protein GI: 1020155 from [Arabidopsis thaliana] (68414.m02828) 714 Not regulated NC-NC-NC 264211_at At1g22770 gigantea protein (GI) identical to gigantea protein SP: Q9SQI2 from [Arabidopsis thaliana] (68414.m02845) 715 Not regulated NC-NC-NC 264156_at At1g65280 DNAJ heat shock N-terminal domain-containing protein contains Pfam profile PF00226 DnaJ domain (68414.m07402) 716 Not regulated NC-NC-NC 264158_at At1g65260 PspA/IM30 family protein contains Pfam PF04012: PspA/IM30 family profile; similar to Membrane-associated 30 kDa protein, chloroplast precursor (M30) (Swiss-Prot: Q03943) [Pisum sativum]; similar to phage shock protein A (GI: 28806161) [Vibrio parahaemolyticus]; similar to Phage shock protein A. (Swiss-Prot: P23853) [Shigella flexneri] (68414.m07398) 717 Not regulated NC-NC-NC 264159_at At1g65270 expressed protein (68414.m07399) 718 Not regulated NC-NC-NC 264164_at At1g65295 expressed protein (68414.m07404) 719 Not regulated NC-NC-NC 264165_at At1g65410 ABC transporter family protein contains similarity to toluene tolerance protein Ttg2A GI: 4336798 from [Pseudomonas putida] (68414.m07421) 720 Not regulated NC-NC-NC 264168_at At1g02080 transcriptional regulator-related contains Pfam PF04054: CCR4-Not complex component, Not1; contains TIGRFAM TIGR01612: reticulocyte binding protein; similar to General negative regulator of transcription subunit 1 (SP: P25655) {Saccharomyces cerevisiae}; Location of ESTs gb|T44328 and gb|AA395265 (68414.m00130) 721 Not regulated NC-NC-NC 264170_at At1g02260 transmembrane protein, putative similar to P protein (Melanocyte-specific transporter protein) (SP: Q04671) {Homo sapiens}; contains 8 transmembrane domains (68414.m00165) 722 Not regulated NC-NC-NC 264172_at At1g02120 GRAM domain-containing protein-related contains low similarity to PF02893: GRAM domain (68414.m00138) 723 Not regulated NC-NC-NC 264173_at At1g02160 expressed protein (68414.m00143) 724 Not regulated NC-NC-NC 264177_at At1g02150 pentatricopeptide (PPR) repeat-containing protein low similarity to DNA-binding protein [Triticum aestivum] GI: 6958202; contains Pfam profile: PF01535 PPR repeat (68414.m00141) 725 Not regulated NC-NC-NC 264178_at At1g02170 latex-abundant family protein (AMC1)/caspase family protein contains similarity to latex-abundant protein [Hevea brasiliensis] gb: AAD13216; contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain (68414.m00145) 726 Not regulated NC-NC-NC 264152_at At1g02140 mago nashi family protein similar to Mago Nashi, Genbank Accession Number U03559; contains Pfam PF02792: Mago nashi protein domain (68414.m00140) 727 Not regulated NC-NC-NC 264121_at At1g02280 GTP-binding protein (TOC33) identical to atToc33 protein (GI: 11557973) [Arabidopsis thaliana]; Carboxyl-terminal end highly similar to GTP-binding protein SP: U43377, location of EST gb|AA394770 and gb|R30089; identical to cDNA for chloroplast atToc33 protein GI: 11557972 (68414.m00169) 728 Not regulated NC-NC-NC 264122_at At1g02130 Ras-related protein (ARA-5)/small GTP-binding protein, putative identical to Ras-related protein ARA-5 SP: P28188 from [Arabidopsis thaliana] (68414.m00139) 729 Not regulated NC-NC-NC 264123_at At1g02270 endonuclease/exonuclease/phosphatase family protein/calcium-binding EF hand family protein contains Pfam profiles: PF03372 endonuclease/exonuclease/phosphatase family, PF00036 EF hand (68414.m00167) 730 Not regulated NC-NC-NC 264130_at At1g79160 expressed protein (68414.m09230) 731 Not regulated NC-NC-NC 264140_at At1g79210 20S proteasome alpha subunit B, putative nearly identical to SP|O23708 Proteasome subunit alpha type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B) {Arabidopsis thaliana} and to At1g16470 (68414.m09235) 732 Not regulated NC-NC-NC 264120_at At1g79340 latex-abundant protein, putative (AMC7)/caspase family protein similar to latex-abundant protein [Hevea brasiliensis] gb: AAD13216; contains Pfam domain, PF00656: ICE-like protease (caspase) p20 domain (68414.m09246) 733 Not regulated NC-NC-NC 264092_at At1g79040 photosystem II 10 kDa polypeptide identical to photosystem II 10 kDa polypeptide, chloroplast [precursor] SP: P27202 from [Arabidopsis thaliana]; contains Pfam profile: PF04725 photosystem II 10 kDa polypeptide PsbR (68414.m09216) 734 Not regulated NC-NC-NC 264097_s_at At1g79010 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) identical to SP|Q42599 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-23 KD) (CI-23 KD) (Complex I-28.5 KD) (CI-28.5 KD) {Arabidopsis thaliana} (68414.m09213) 735 Not regulated NC-NC-NC 264098_at At1g79260 expressed protein (68414.m09240) 736 Not regulated NC-NC-NC 264099_at At1g79050 DNA repair protein recA identical to DNA repair protein recA, chloroplast [Precursor] SP: Q39199 from [Arabidopsis thaliana]; contains Pfam profile: PF00154 recA bacterial DNA recombination protein (68414.m09217) 737 Not regulated NC-NC-NC 264102_at At1g79270 expressed protein contains Pfam profile PF04146: YT521-B-like family (68414.m09241) 738 Not regulated NC-NC-NC 264084_at At2g31240 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515: TPR Domain (68415.m03815) 739 Not regulated NC-NC-NC 264089_at At2g31200 actin-depolymerizing factor 6 (ADF6) identical to SP|Q9ZSK2 Actin-depolymerizing factor 6 (ADF-6) (AtADF6) {Arabidopsis thaliana} (68415.m03810) 740 Not regulated NC-NC-NC 264059_at At2g31305 expressed protein (68415.m03822) 741 Not regulated NC-NC-NC 264061_at At2g27970 cyclin-dependent kinase, putative/CDK, putative similar to Cks1 protein [Arabidopsis thaliana] gi|2274859|emb|CAA03859 (68415.m03390) 742 Not regulated NC-NC-NC 264069_at At2g28000 RuBisCO subunit binding-protein alpha subunit, chloroplast/60 kDa chaperonin alpha subunit/CPN-60 alpha identical to SWISS- PROT: P21238-RuBisCO subunit binding-protein alpha subunit, chloroplast precursor (60 kDa chaperonin alpha subunit, CPN-60 alpha) [Arabidopsis thaliana] (68415.m03393) 743 Not regulated NC-NC-NC 264070_at At2g27960 cyclin-dependent kinase/CDK (CKS1) identical to Cks1 protein [Arabidopsis thaliana] gi|2274859|emb|CAA03859 (68415.m03389) 744 Not regulated NC-NC-NC 264076_at At2g28540 expressed protein (68415.m03467) 745 Not regulated NC-NC-NC 264078_at At2g28470 beta-galactosidase, putative/lactase, putative similar to Beta-galactosidase precursor SP: P48980 from [Lycopersicon esculentum] (68415.m03460) 746 Not regulated NC-NC-NC 264080_at At2g28520 vacuolar proton ATPase, putative similar to Swiss-Prot: Q93050 vacuolar proton translocating ATPase 116 kDa subunit A isoform 1 (Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit, Vacuolar proton pump subunit 1, Vacuolar adenosine triphosphatase subunit Ac116) [Homo sapiens] (68415.m03465) 747 Not regulated NC-NC-NC 264056_at At2g28510 Dof-type zinc finger domain-containing protein similar to elicitor-responsive Dof protein ERDP GI: 6092016 from [Pisum sativum] (68415.m03464) 748 Not regulated NC-NC-NC 264028_at At2g03680 expressed protein Alternative splicing exists based on EST evidence (68415.m00327) 749 Not regulated NC-NC-NC 264037_at At2g03750 sulfotransferase family protein similar to similar to steroid sulfotransferase 3 [Brassica napus] GI: 3420008, steroid sulfotransferase 1 [Brassica napus] GI: 3420034; contains Pfam profile PF00685: Sulfotransferase domain (68415.m00335) 750 Not regulated NC-NC-NC 264038_at At2g03690 coenzyme Q biosynthesis Coq4 family protein/ubiquinone biosynthesis Coq4 family protein contains Pfam profile PF05019: Coenzyme Q (ubiquinone) biosynthesis protein Coq4 (68415.m00328) 751 Not regulated NC-NC-NC 264040_at At2g03730 ACT domain-containing protein (ACR5) contains Pfam ACT domain PF01842 (68415.m00333) 752 Not regulated NC-NC-NC 264048_at At2g22400 NOL1/NOP2/sun family protein contains Pfam profile PF01189: NOL1/NOP2/sun family (68415.m02656) 753 Not regulated NC-NC-NC 263995_at At2g22540 short vegetative phase protein (SVP) identical to cDNA short vegetative phase protein (SVP) GI: 10944319; (68415.m02673) 754 Not regulated NC-NC-NC 263998_at At2g22510 hydroxyproline-rich glycoprotein family protein similar to proline-rich cell wall protein [Gossypium barbadense] gi|451544|gb|AAA79364; contains proline-rich extensin domains, INTERPRO: IPR002965 (68415.m02670) 755 Not regulated NC-NC-NC 264003_at At2g22475 GRAM domain-containing protein/ABA-responsive protein-related similar to ABA-responsive protein [Hordeum vulgare] GI: 4103635; contains Pfam profile PF02893: GRAM domain (68415.m02665) 756 Not regulated NC-NC-NC 264008_at At2g21120 expressed protein (68415.m02506) 757 Not regulated NC-NC-NC 264012_at At2g21080 expressed protein (68415.m02502) 758 Not regulated NC-NC-NC 264018_at At2g21170 triosephosphate isomerase, chloroplast, putative similar to Triosephosphate isomerase, chloroplast precursor. SP|P48496 from Spinacia oleracea, SP|P46225 from Secale cereale (68415.m02511) 759 Not regulated NC-NC-NC 264019_at At2g21130 peptidyl-prolyl cis-trans isomerase/cyclophilin (CYP2)/rotamase identical to cyclophilin [Arabidopsis thaliana] gi|2443757|gb|AAB71402: similar to peptidyl-prolyl cis-trans isomerase, PPlase (cyclophilin, cyclosporin A-binding protein) [Arabidopsis thaliana] SWISS-PROT: P34790 (68415.m02507) 760 Not regulated NC-NC-NC 264020_at At2g21160 translocon-associated protein alpha (TRAP alpha) family protein contains Pfam profile: PF03896 translocon-associated protein (TRAP), alpha subunit (68415.m02510) 761 Not regulated NC-NC-NC 264022_at At2g21185 expressed protein (68415.m02513) 762 Not regulated NC-NC-NC 264024_at At2g21180 expressed protein (68415.m02512) 763 Not regulated NC-NC-NC 263978_at At2g42680 ethylene-responsive transcriptional coactivator, putative similar to ethylene-responsive transcriptional coactivator [Lycopersicon esculentum] gi|5669634|gb|AAD46402 (68415.m05283) 764 Not regulated NC-NC-NC 263980_at At2g42770 peroxisomal membrane 22 kDa family protein contains Mpv17/PMP22 family domain, Pfam: PF04117 (68415.m05296) 765 Not regulated NC-NC-NC 263986_at At2g42790 citrate synthase, glyoxysomal, putative strong similarity to SP|P49299 Citrate synthase, glyoxysomal precursor {Cucurbita maxima}; contains Pfam profile PF00285: Citrate synthase (68415.m05298) 766 Not regulated NC-NC-NC 263987_at At2g42690 lipase, putative similar to lipase [Dianthus caryophyllus] GI: 4103627; contains Pfam profile PF01764: Lipase (68415.m05285) 767 Not regulated NC-NC-NC 263990_at At2g42810 serine/threonine protein phosphatase, putative similar to SP|P53042 Serine/threonine protein phosphatase 5 (EC 3.1.3.16) (PP5) (Protein phosphatase T) (PPT) {Rattus norvegicus}: contains Pfam profiles PF00149: Ser/Thr protein phosphates., PF00515: TPR Domain (68415.m05300) 768 Not regulated NC-NC-NC 263938_at At2g35900 expressed protein (68415.m04407) 769 Not regulated NC-NC-NC 263939_at At2g36070 mitochondrial import inner membrane translocase subunit TIM44, putative contains similarity to Swiss-Prot: O35857 import inner membrane translocase subunit TIM44, mitochondrial precursor [Mus musculus]; contains Pfam domian PF04280: Mitochondrial import inner membrane, translocase subunit TIM44 (68415.m04429) 770 Not regulated NC-NC-NC 263949_at At2g36060 ubiquitin-conjugating enzyme family protein similar to DNA-binding protein CROC-1B [Homo sapiens] GI: 1066082; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme (68415.m04427) 771 Not regulated NC-NC-NC 263951_at At2g35960 harpin-induced family protein/HIN1 family protein/harpin-responsive family protein similar to harpin-induced protein hin1 (GI: 1619321) [Nicotiana tabacum] (68415.m04414) 772 Not regulated NC-NC-NC 263954_at At2g35840 sucrose-phosphatase 1 (SPP1) identical to sucrose-phosphatase (SPP1) [Arabidopsis thaliana] GI: 11127757 (68415.m04400) 773 Not regulated NC-NC-NC 263956_at At2g35940 homeodomain-containing protein contains ‘Homeobox’ domain signature, Prosite: PS00027 (68415.m04411) 774 Not regulated NC-NC-NC 263958_at At2g38240 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat (68415.m04448) 775 Not regulated NC-NC-NC 263928_at At2g36330 integral membrane protein, putative contains 4 transmembrane domains; contains Pfam PF04535: Domain of unknown function (DUF588); similar to putative ethylene responsive element binding protein (GI: 22135858) [Arabidopsis thaliana] (68415.m04459) 776 Not regulated NC-NC-NC 263929_at At2g36310 inosine-uridine preferring nucleoside hydrolase family protein similar to Chain A, Crystal Structure Of Nucleoside Hydrolase From Leishmania Major GI: 8569431; contains Pfam profile PF01156: Inosine-uridine preferring nucleoside hydrolase (68415.m04457) 777 Not regulated NC-NC-NC 263930_at At2g36300 integral membrane Yip1 family protein contains Pfam domain, PF04893: Yip1 domain (68415.m04455) 778 Not regulated NC-NC-NC 263904_at At2g36380 ABC transporter family protein related to multi drug resistance proteins and P-glycoproteins (68415.m04484) 779 Not regulated NC-NC-NC 263906_at At2g36250 chloroplast division protein FtsZ (FtsZ2-1) identical to chloroplast division protein AtFtsZ2-1 [Arabidopsis thaliana] GI: 15636809, plastid division protein FtsZ [Arabidopsis thaliana] GI: 14195704 (68415.m04449) 780 Not regulated NC-NC-NC 263920_at At2g36410 expressed protein contains Pfam profile PF04949: Family of unknown function (DUF662) (68415.m04469) 781 Not regulated NC-NC-NC 263921_at At2g36460 fructose-bisphosphate aldolase, putative similar to PIR|S65073 fructose-bisphosphate aldolase (EC 4.1.2.13) isoenzyme C-1, cytosolic [Oryza sativa]; contains Pfam profile PF00274 Fructose-bisphosphate aldolase class-I (68415.m04475) 782 Not regulated NC-NC-NC 263922_s_at At2g36580 pyruvate kinase, putative similar to pyruvate kinase, cytosolic isozyme [Glycine max] SWISS-PROT: Q42806 (68415.m04486) 783 Not regulated NC-NC-NC 263898_at At2g21950 SKP1 interacting partner 6 (SKIP6) identical to SKP1 interacting partner 6 GI: 10716957 from [Arabidopsis thaliana] (68415.m02608) 784 Not regulated NC-NC-NC 263873_at At2g21860 violaxanthin de-epoxidase-related contains weak similarity to violaxanthin de-epoxidase precursor gi|1438875|gb|AAC49373 (68415.m02597) 785 Not regulated NC-NC-NC 263874_at At2g21870 expressed protein (68415.m02598) 786 Not regulated NC-NC-NC 263880_at At2g21960 expressed protein (68415.m02609) 787 Not regulated NC-NC-NC 263886_at At2g36960 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain (68415.m04532) 788 Not regulated NC-NC-NC 263867_at At2g36830 major intrinsic family protein/MIP family protein contains Pfam profile: MIP PF00230 (68415.m04516) 789 Not regulated NC-NC-NC 263840_at At2g36885 expressed protein (68415.m04522) 790 Not regulated NC-NC-NC 263842_at At2g36835 expressed protein (68415.m04517) 791 Not regulated NC-NC-NC 263856_at At2g04410 expressed protein (68415.m00445) 792 Not regulated NC-NC-NC 263859_at At2g04360 expressed protein (68415.m00437) 793 Not regulated NC-NC-NC 263862_at At2g04550 dual specificity protein phosphatase family protein contains Pfam profile: PF00782 dual specificity phosphates, catalytic domain (68415.m00461) 794 Not regulated NC-NC-NC 263808_at At2g04340 expressed protein (68415.m00431) 795 Not regulated NC-NC-NC 263809_at At2g04570 GDSL-motif lipase/hydrolase family protein similar to family II lipase EXL3 (GI: 15054388), EXL1 (GI: 15054382), EXL2 (GI: 15054384) [Arabidopsis thaliana] ; contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif (68415.m00465) 796 Not regulated NC-NC-NC 263810_at At2g04520 eukaryotic translation initiation factor 1A, putative/eIF-1A, putative/eIF-4C, putative strong similarity to translation initiation factor (eIF-1A) [Beta vulgaris] GI: 17977975; contains Pfam profile PF01176: Eukaryotic initiation factor 1A (68415.m00458) 797 Not regulated NC-NC-NC 263811_at At2g04350 long-chain-fatty-acid-CoA ligase family protein/long-chain acyl-CoA synthetase family protein (LACS8) similar to LACS 4 [SP|O35547] from Rattus norvegicus, LACS 4 [S9|O60488] from Homo sapiens; contains Pfam HMM hit: AMP-binding enzymes PF00501 (68415.m00433) 798 Not regulated NC-NC-NC 263821_s_at At2g09990 40S ribosomal protein S16 (RPS16A) Same as GB: Q42340 (68415.m01037) 799 Not regulated NC-NC-NC 263824_at At2g40360 transducin family protein/WD-40 repeat family protein contains 4 WD-40 repeats (PF00400); similar to block of proliferation protein Bop1 (GI: 1679772) [Mus musculus] (68415.m04977) 800 Not regulated NC-NC-NC 263826_at At2g40410 Ca(2+)-dependent nuclease, putative similar to Ca(2+)-dependent nuclease [Arabidopsis thaliana] GI: 7684292 (68415.m04983) 801 Not regulated NC-NC-NC 263831_at At2g40300 ferritin, putative similar to ferritin subunit cowpea2 precursor [Vigna unguiculata] GI: 2970654; contains Pfam profile PF00210: Ferritin-like domain (68415.m04964) 802 Not regulated NC-NC-NC 263835_at At2g40290 eukaryotic translation initiation factor 2 subunit 1, putative/eIF-2A, putative/eIF-2-alpha, putative similar to Swiss-Prot: P05198 eukaryotic translation initiation factor 2 subunit 1 (Eukaryotic translation initiation factor 2 alpha subunit) (eIF-2-alpha) (EIF-2alpha) (EIF-2A) [Homo sapiens] (68415.m04960) 803 Not regulated NC-NC-NC 263802_at At2g40430 expressed protein identical to Protein At2g40430 (Swiss-Prot: O22892) [Arabidopsis thaliana]; similar to Glioma tumor suppressor candidate region gene 2 protein (p60) (Swiss-Prot: Q9NZM5) [Homo sapiens] (68415.m04986) 804 Not regulated NC-NC-NC 263805_at At2g40400 expressed protein similar to GI: 7572912 (At3g56140)[Arabidopsis thaliana] (68415.m04981) 805 Not regulated NC-NC-NC 263774_at At2g40280 dehydration-responsive family protein similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI: 15320410; contains Pfam profile PF03141: Putative methyltransferase (68415.m04958) 806 Not regulated NC-NC-NC 263776_s_at At2g46440 cyclic nucleotide-regulated ion channel, putative (CNGC11) similar to cyclic nucleotide and calmodulin-regulated ion channel (cngc3) GI: 4581201 from [Arabidopsis thaliana] (68415.m05779) 807 Not regulated NC-NC-NC 263778_at At2g46470 OXA1 protein, putative similar to Oxa1 protein [Arabidopsis thaliana] GI: 10176922 (68415.m05783) 808 Not regulated NC-NC-NC 263785_at At2g46390 expressed protein (68415.m05774) 809 Not regulated NC-NC-NC 263786_at At2g46370 auxin-responsive GH3 family protein similar to auxin-responsive GH3 product [Glycine max] GI: 18591; contains Pfam profile PF03321: GH3 auxin-responsive promoter (68415.m05770) 810 Not regulated NC-NC-NC 263787_at At2g46420 expressed protein (68415.m05777) 811 Not regulated NC-NC-NC 263796_at At2g24540 kelch repeat-containing F-box family protein similar to SKP1 interacting partner 4 [Arabidopsis thaliana] GI: 10716953: contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain (68415.m02931) 812 Not regulated NC-NC-NC 263797_at At2g24570 WRKY family transcription factor identical to WRKY transcription factor 17 GI: 15991743 from [Arabidopsis thaliana] (68415.m02934) 813 Not regulated NC-NC-NC 263799_at At2g24550 expressed protein weak similarity to MTD1 [Medicago truncatula] GI: 9294810 (68415.m02932) 814 Not regulated NC-NC-NC 263750_at At2g21530 forkhead-associated domain-containing protein/FHA domain-containing protein (68415.m02562) 815 Not regulated NC-NC-NC 263756_at At2g21270 ubiquitin fusion degradation UFD1 family protein similar to SP|P70362 Ubiquitin fusion degradation protein 1 homolog (UB fusion protein 1) {Mus musculus}; contains Pfam profile PF03152: Ubiquitin fusion degradation protein UFD1 (68415.m02532) 816 Not regulated NC-NC-NC 263759_at At2g21290 expressed protein (68415.m02534) 817 Not regulated NC-NC-NC 263760_at At2g21280 expressed protein similar to YfhF (GI: 2804536) [Bacillus subtilis] (68415.m02533) 818 Not regulated NC-NC-NC 263761_at At2g21330 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI: 4827251], Oryza sativa, PIR2: T02057 [SP|Q40677] (68415.m02538) 819 Not regulated NC-NC-NC 263764_at At2g21410 vacuolar proton ATPase, putative similar to vacuolar proton ATPase 100-kDa subunit from Dictyostelium discoideum P|1384136|gb|AAB49621 (68415.m02548) 820 Not regulated NC-NC-NC 263766_at At2g21440 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 {RNA recognition motif} (RRM) (68415.m02551) 821 Not regulated NC-NC-NC 263712_at At2g20585 expressed protein (68415.m02405) 822 Not regulated NC-NC-NC 263717_at At2g13560 malate oxidoreductase, putative similar to NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor (EC 1.1.1.39) (NAD-ME) (SP: P37221) {Solanum tuberosum} (68415.m01495) 823 Not regulated NC-NC-NC 263722_at At2g13650 GDP-mannose transporter (GONST1) identical to GDP-mannose transporter SP: Q941R4 from [Arabidopsis thaliana] (68415.m01504) 824 Not regulated NC-NC-NC 263726_at At2g13610 ABC transporter family protein (68415.m01500) 825 Not regulated NC-NC-NC 263727_at At2g13540 mRNA cap-binding protein (ABH1) identical to mRNA cap binding protein [Arabidopsis thaliana] GI: 15192738; contains Pfam profile PF02854: MIF4G domain; identical to cDNA nuclear cap-binding protein CBP80 GI: 8515770 (68415.m01493) 826 Not regulated NC-NC-NC 263737_at At1g60010 expressed protein (68414.m06761) 827 Not regulated NC-NC-NC 263685_at At1g26830 cullin, putative similar to Cutlin homolog 3 (CUL-3) SP: Q13618, GI: 3639052 from [Homo sapiens]; contains Pfam profile PF00888: Cullin family (68414.m03270) 828 Not regulated NC-NC-NC 263686_at At1g26910 60S ribosomal protein L10 (RPL108) Nearly identical to ribosomal protein L10.e, Wilm's tumor suppressor homologue, gi|17682 (Z15157), however differences in sequence indicate this is a different member of the L10 family (68414.m03281) 829 Not regulated NC-NC-NC 263888_at At1g26920 expressed protein Location of EST 228A16T7A, gb|N65686 (68414.m03282) 830 Not regulated NC-NC-NC 263691_at At1g26880 60S ribosomal protein L34 (RPL34A) identical to GB: Q42351, location of EST 105E2T7, gb|T22624 (68414.m03278) 831 Not regulated NC-NC-NC 263693_at At1g31200 expressed protein (68414.m03819) 832 Not regulated NC-NC-NC 263701_at At1g31160 zinc-binding protein, putative/protein kinase C inhibitor, putative similar to 14 kDa zinc-binding protein (Protein kinase C inhibitor, PKCI) [Zea Mays] Swiss-Prot: P42856 (68414.m03812) 833 Not regulated NC-NC-NC 263703_at At1g31170 parB-like nuclease domain-containing protein contains Pfam profile PF02195: ParB-like nuclease domain (68414.m03815) 834 Not regulated NC-NC-NC 263704_at At1g31130 expressed protein (68414.m03809) 835 Not regulated NC-NC-NC 263705_at At1g31190 inositol monophosphatase family protein similar to SP|P29218 Myo-inositol-1(or 4)-monophosphatase (EC 3.1.3.25) (Inositol monophosphatase) {Homo sapiens}; contains Pfam profile PF00459: Inositol monophosphatase family; EST gb|AA597395 comes from this gene (68414.m03818) 836 Not regulated NC-NC-NC 263709_at At1g09310 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538 (68414.m01042) 837 Not regulated NC-NC-NC 263678_at At1g04420 aldo/keto reductase family protein Similar to SP|Q46933 Tas protein {Escherichia coli}, Babesia aldo-keto reductase SP|P40690; contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family (68414.m00433) 838 Not regulated NC-NC-NC 263651_at At1g04340 lesion inducing protein-related similar to ORF, able to induce HR-like lesions [Nicotiana tabacum] (68414.m00424) 839 Not regulated NC-NC-NC 263654_at At1g04300 meprin and TRAF homology domain-containing protein/MATH domain-containing protein weak similarity to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI: 11993471; contains Pfam PF00917; Meprin And TRAF-Homology (MATH) domain (68414.m00421) 840 Not regulated NC-NC-NC 263660_at At1g04260 prenylated rab acceptor (PRA1) family protein weak similarity to prenylated Rab acceptor [Mus musculus] GI: 7716652; contains Pfam profile PF03208: Prenylated rab acceptor (PRA1) (68414.m00417) 841 Not regulated NC-NC-NC 263661_at At1g04290 thioesterase family protein contains Pfam profile PF03061: thioesterase family protein; EST gb|T45093 comes from this gene (68414.m00420) 842 Not regulated NC-NC-NC 263663_at At1g04410 malate dehydrogenase, cytosolic, putative strong similarity to malate dehydrogenase from Mesembryanthemum crystallinum [SP|O24047], Medicago sativa [SP|O48905], Prunus persica [GI: 15982948]; contains InterPro entry IPR001236: Lactate/malate dehydrogenase (68414.m00432) 843 Not regulated NC-NC-NC 263666_at At1g04510 transducin family protein/WD-40 repeat family protein contains 6 WO-40 repeats (PF00400); similar to cell cycle control protein cwf6 (SP: O14011) [Schizosaccharomyces pombe (Fission yeast)] (68414.m00442) 844 Not regulated NC-NC-NC 263667_at At1g04270 40S ribosomal protein S15 (RPS15A) Strong similarity to Oryza 40S ribosomal protein S15. ESTs gb|R29788, gb|ATTS0365 come from this gene (68414.m00418) 845 Not regulated NC-NC-NC 263688_at At1g04350 2-oxoglutarate-dependent dioxygenase, putative Similar to Arabidopsis 2A6 (gb|X83096) and to tomato ethylene synthesis regulatory protein E8 (SP|P10967); EST gb|T76913 comes from this gene (68414.m00425) 846 Not regulated NC-NC-NC 263669_at At1g04400 cryptochrome 2 apoprotein (CRY2)/blue light photoreceptor (PHH1) 97% identical to photolysase (PHH1) (SP: Q96524) and cryptochrome 2 apoprotein (CRY2) (SP: U43397). ESTs gb|W43661 and gb|Z25638 come from this gene; contains Pfam profiles PF03441: FAD binding domain of DNA photolyase and PF00875: deoxyribodipyrimidine photolyase; identical to cDNA Cvi cryptochrome 2 (CRY2) GI: 18026275 (68414.m00430) 847 Not regulated NC-NC-NC 263673_at At2g04800 expressed protein (68415.m00493) 848 Not regulated NC-NC-NC 263647_at At2g04690 cellular repressor of E1A-stimulated genes (GREG) family contains 1 transmembrane domain; similar to CREG2 (GI: 24371079) [Homo sapiens] and (GI: 24371081) [Mus muscutus]; similar to cellular repressor of E1A-stimulated genes CREG (GI: 3550343) [Homo sapiens] (68415.m00479) 849 Not regulated NC-NC-NC 283821_at At2g04830 DNA-directed RNA polymerase II, putative similar to SP|Q24320 DNA-directed RNA polymerase II 14.4 kDa polypeptide (EC 2.7.7.6) (RP86) {Drosophila melanogaster}; contains PfaM profile PF01192: RNA polymerases K/14 to 18 kDa subunit (68415.m00473) 850 Not regulated NC-NC-NC 263624_at At2g04700 ferredoxin thioredoxin reductase catalytic beta chain family protein contains Pfam profile: PF02943 ferredoxin thioredoxin reductase catalytic beta (68415.m00480) 851 Not regulated NC-NC-NC 263831_at At2g04900 expressed protein (68415.m00509) 852 Not regulated NC-NC-NC 263632_at At2g04795 expressed protein (68415.m00492) 853 Not regulated NC-NC-NC 263636_at At2g11910 expressed protein (68415.m01277) 854 Not regulated NC-NC-NC 263637_at At2g11890 expressed protein (68415.m01276) 855 Not regulated NC-NC-NC 263589_at At2g25280 expressed protein (68415.m03024) 856 Not regulated NC-NC-NC 263591_at At2g01910 microtubule associated protein (MAP65/ASE1) family protein low similarity to protein regulating cytokinesis 1 (PRC1) [Homo sapiens] GI: 2865521; contains Pfam profile PF03999: Microtubule associated protein (MAP65/ASE1 family) (68415.m00125) purple acid phosphatase, putative contains Pfam profile: PF00149 calcineurin-like phosphoesterase; identical to purple acid 857 Not regulated NC-NC-NC 263595_at At2g01890 phosphatase (GI: 20257479) [Arabidopsis thaliana]; (68415.m00122) 858 Not regulated NC-NC-NC 263557_at At2g16400 homeodomain-containing protein (68415.m01877) 859 Not regulated NC-NC-NC 263550_at At2g17033 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat (68415.m01964) 860 Not regulated NC-NC-NC 263552_x_at At2g24980 proline-rich extensin-like family protein contains proline-rich extensin domains, INTERPRO: IPR002965 (68415.m02987) 861 Not regulated NC-NC-NC 263529_at At2g24765 ADP-ribosylation factor 3 (ARF3) identical to GP: 453191 ADP-ribosylation factor 3 {Arabidopsis thaliana}; contains domain PF00025: ADP-ribosylation factor family (68415.m02959) 862 Not regulated NC-NC-NC 263532_s_at At5g37350 RIO1 family protein similar to extragenic suppressor of the bimD6 mutation (SUDD) [Emericella nidulans] GI: 2338556, RIO1 [Saccharomyces cerevisiae] GI: 1359602: contains Pfam profile PF01163: RIO1 family (68416.m04486) 863 Not regulated NC-NC-NC 263533_at At2g24820 Rieske [2Fe—2S] domain-containing protein similar to Rieske iron-sulfur protein Tic55 from Pisum sativum [gi: 2764524]; contains Pfam PF00355 Rieske [2Fe—2S] domain (68415.m02969) 864 Not regulated NC-NC-NC 263537_at At2g24790 zinc finger (B-box type) family protein (68415.m02963) 865 Not regulated NC-NC-NC 263541_at At2g24860 chaperone protein dnaJ-related similar to Tsi1-interacting protein TSIP1 (GI: 4337001) [Nicotiana tabacum] (68415.m02973) 866 Not regulated NC-NC-NC 263549_at At2g21650 myb family transcription factor contains PFAM profile: PF00249 myb-like DNA-binding domain (68415.m02575) 867 Not regulated NC-NC-NC 263516_at At2g21600 RER1B protein identical to SP|O48671 RER1B protein (AtRER1B) {Arabidopsis thaliana} (68415.m02569) 868 Not regulated NC-NC-NC 263517_at At2g21620 universal stress protein (USP) family protein/responsive to dessication protein (RD2) strong similarity to RD2 protein [Arabidopsis thaliana] GI: 15320408; contains Pfam profile PF00582: universal stress protein family; identical to cDNA RD2 GI: 15320407 (68415.m02571) 869 Not regulated NC-NC-NC 263519_at At2g21580 40S ribosomal protein S25 (RPS25B) (68415.m02567) 870 Not regulated NC-NC-NC 263491_at At2g42600 phosphoenolpyruvate carboxylase, putative/PEP carboxylase, putative (PPC2) strong similarity to phosphoenolpyruvate carboxylase [Brassica napus] GI: 507808; contains Pfam profile PF00311: phosphoenolpyruvate carboxylase (68415.m05271) 871 Not regulated NC-NC-NC 263493_at At2g42520 DEAD box RNA helicase, putative similar to SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo sapiens] GI: 3523150; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain (68415.m05262) 872 Not regulated NC-NC-NC 263494_at At2g42590 14-3-3 protein GF14 mu (GRF9) identical to GF14 mu GI: 3551052, SP: Q96299 from [Arabidopsis thaliana] (68415.m05270) 873 Not regulated NC-NC-NC 263495_at At2g42530 cold-responsive protein/cold-regulated protein (cor15b) nearly identical to cold-regulated gene cor15b [Arabidopsis thaliana] GI: 456016; contains Pfam profile PF02987: Late embryogenesis abundant protein (68415.m05263) 874 Not regulated NC-NC-NC 263496_at At2g42570 expressed protein (68415.m05268) 875 Not regulated NC-NC-NC 263513_at At2g12400 expressed protein (68415.m01339) 876 Not regulated NC-NC-NC 263488_at At2g31840 expressed protein (68415.m03888) 877 Not regulated NC-NC-NC 263459_at At2g31820 ankyrin repeat family protein contains ankyrin repeat domains, Pfam: PF00023 (68415.m03886) 878 Not regulated NC-NC-NC 263461_at At2g31800 ankyrin protein kinase, putative similar to ankyrin-kinase [Medicago truncatula] gi|18700701|gb|AAL78674; contains Pfam profile PF00023: Ankyrin repeat identical to cDNA calcineurin B-like protein 10 (CBL10) GI: 29150247; blastp match of 67% identity and 1.9e−200 P-value to GP|18700701|gb|AAL78674.1|AF458699_1|AF458699 ankyrin-kinase {Medicago truncatula} (68415.m03882) 879 Not regulated NC-NC-NC 263466_at At2g31740 expressed protein (68415.m03876) 880 Not regulated NC-NC-NC 263472_at At2g31950 881 Not regulated NC-NC-NC 263473_at At2g31750 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase (68415.m03877) 882 Not regulated NC-NC-NC 263482_at At2g03980 GDSL-motif lipase/hydrolase family protein similar to Anther-specific proline-rich protein APG from Brassica napus (SP|P40603), Arabidopsis thaliana (GI: 22599); contains Pfam profile PF00857: Lipase/Acylhydrolase with GDSL-like motif (68415.m00365) 883 Not regulated NC-NC-NC 263483_at At2904030 heat shock protein, putative strong similarity to heat shock protein [Arabidopsis thaliana] GI: 1906830; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein (68415.m00371) 884 Not regulated NC-NC-NC 263428_at At2g22310 ubiquitin-specific protease 4 (UBP4) identical to GI: 2347100 (68415.m02647) 885 Not regulated NC-NC-NC 263429_at At2g22250 aminotransferase class I and II family protein similar to aspartate aminotransferase from Bacillus stearothermophilus SP|Q59228, Thermus aquaticus SP|O33822; contains Pfam profile PF00155 aminotransferase, classes I and II (68415.m02641) 886 Not regulated NC-NC-NC 263442_at At2g28605 expressed protein (68415.m03477) 887 Not regulated NC-NC-NC 263424_at At2g31510 IBR domain-containing protein/ARIADNE-like protein ARI7 (ARI7) identical to ARIADNE-like protein ARI7 [Arabidopsis thaliana] GI: 29125028; contains similarity to Swiss-Prot: Q94981 ariadne-1 protein (Ari-1) [Drosophila melanogaster]:contains Pfam profile PF01485: IBR domain (68415.m03850) 888 Not regulated NC-NC-NC 263425_at At2g31530 secY family protein low similarity to SP|P31159 Preprotein translocase secY subunit {Synechococcus sp}; contains Pfam profile PF00344: eubacterial secY protein (68415.m03852) 889 Not regulated NC-NC-NC 263396_at At2g31710 expressed protein (68415.m03870) 890 Not regulated NC-NC-NC 263398_at At2g31680 Ras-related GTP-binding protein, putative similar to GTP-binding protein GI: 289370 from [Brassica napus] (68415.m03867) 891 Not regulated NC-NC-NC 263399_at At2g31490 expressed protein (68415.m03846) 892 Not regulated NC-NC-NC 263400_s_at At2g31610 40S ribosomal protein S3 (RPS3A) (68415.m03862) 893 Not regulated NC-NC-NC 263406_at At2904160 subtilisin-like protease (AIR3) almost identical to subtilisin-like protease AIR3 GI: 4218991 from [Arabidopsis thaliana] , missing 200 aa at N-terminus (68415.m00400) 894 Not regulated NC-NC-NC 263410_at At2g04039 expressed protein (68415.m00383) 895 Not regulated NC-NC-NC 263411_at At2g28710 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type (68415.m03490) 896 Not regulated NC-NC-NC 263413_at At2g21240 expressed protein (68415.m02524) 897 Not regulated NC-NC-NC 263414_at At2g21230 bZIP family transcription factor contains a bZIP transcription factor basic domain signature (PDOC00036) (68415.m02520) 898 Not regulated NC-NC-NC 263415_at At2g17250 expressed protein weak similarity to Ribosome biogenesis protein MAK21 (Swiss-Prot: Q12176) [Saccharomyces cerevisiae] (68415.m01992) 899 Not regulated NC-NC-NC 263419_at At2g17220 protein kinase, putative similar to protein kinase APK1A [Arabidopsis thaliana] Swiss-Prot: Q06548 (68415.m01988) 900 Not regulated NC-NC-NC 263420_at At2g17240 expressed protein (68415.m01991) 901 Not regulated NC-NC-NC 263422_s_at At2g17200 ubiquitin family protein weak similarity to PLIC-2 (ubiquitin-like type II) [Homo sapiens] GI: 9937505; contains Pfam profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N domain (68415.m01986) 902 Not regulated NC-NC-NC 263371_at At2g20490 nucleolar RNA-binding Nop10p family protein similar to Nop10p (GI: 8096260) [Homo sapiens] (68415.m02392) 903 Not regulated NC-NC-NC 263334_at At2g03820 nonsense-mediated mRNA decay NMD3 family protein contains Pfam profile: PF04981 NMD3 family (68415.m00343) 904 Not regulated NC-NC-NC 263344_at At2904940 scramblase-related weak similarity to Phospholipid scramblase 1 (PL scrambles 1) (Ca(2)-dependent phospholipid scrambles 1) (Transplantability associated protein 1) (TRA1) (NOR1) (Swiss-Prot: Q9JJ00) [Mus musculus); weak similarity to Phospholipid scrambles 4 (PL scrambles 4) (Ca(2)-dependent phospholipid scrambles 4) (Swiss-Prot: Q9NRO2) [Homo sapiens] (68415.m00516) 905 Not regulated NC-NC-NC 263345_s_at At2g05070 chlorophyll A-B binding protein/LHCII type II (LHCB2.2) identical to Lhcb2 protein [Arabidopsis thaliana] GI: 4741946; contains Pfam profile PF00504: Chlorophyll A-B binding protein (68415.m00529) 906 Not regulated NC-NC-NC 263350_at At2g13360 serine-glyoxylate aminotransferase-related similar to serine-glyoxylate aminotransferase (GI: 21535798) [Methylobacterium dichloromethanicum; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V|(68415.m01474) 907 Not regulated NC-NC-NC 263351_at At2g22120 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68415.m02826) 908 Not regulated NC-NC-NC 263356_at At2g22090 UBP1 interacting protein 1a (UBA1a) nearly identical to UBP1 interacting protein 1a [Arabidopsis thaliana] GI: 19574238; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); based on cDNA of partial mRNA for UBP1 interacting protein 1a (uba1a) GI: 19574235 (68415.m02823) 909 Not regulated NC-NC-NC 263359_at At2g15230 lipase family protein similar to SP|P07098 Triacylglycerol lipase, gastric precursor (EC 3.1.1.3) {Homo sapiens}; contains Pfam profile PF04083: ab-hydrolase associated lipase region (68415.m01737) 910 Not regulated NC-NC-NC 263303_at At2g15240 UNC-50 family protein contains Pfam profile PF05216: UNC-50 family; contains 5 transmembrane domains; similar to inner nuclear membrane RNA-binding protein unc-50 related protein (GI: 2735550) [Rattus norvegicus] (68415.m01738) 911 Not regulated NC-NC-NC 263321_at At2g47170 ADP-ribosylation factor 1 (ARF1) identical to ADP-ribosylation factor ARF1({Arabidopsis thaliana} (SP: P36397) (GP: 166586) 912 Not regulated NC-NC-NC 263325_at At2g04240 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger. C3HC4 type (RING finger) (68415.m00412) 913 Not regulated NC-NC-NC 263330_at At2g15320 leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam: PF00560, INTERPRO: IPR001611 (68415.m01747) 914 Not regulated NC-NC-NC 263331_at At2g15270 expressed protein (68415.m01741) 915 Not regulated NC-NC-NC 263274_at At2g11520 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68415.m01242) 916 Not regulated NC-NC-NC 263286_at At2g36160 40S ribosomal protein S14 (RPS14A) (68415.m04438) 917 Not regulated NC-NC-NC 263288_at At2g36130 peptidyl-prolyl cis-trans isomerase, putative/cyclophilin, putative/rotamase, putative contains Pfam domain, PF03160: peptidyl- prolyl cis-trans isomerase, cyclophilin-type (68415.m04436) 918 Not regulated NC-NC-NC 263296_at At2g38800 calmodulin-binding protein-related contains similarity to potato calmodulin-binding protein PCBP GI: 17933110 from [Solanum tuberosum] (68415.m04764) 919 Not regulated NC-NC-NC 263267_at At2g16510 vacuolar ATP synthase 16 kDa proteolipid subunit 5/V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) identical to SP|P59227 Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16 kDa proteolipid subunit 1/3/5) {Arabidopsis thaliana} GI: 926929; contains Pfam profile PF00137: ATP synthase subunit C (68415.m01893) 920 Not regulated NC-NC-NC 263243_at At2g31350 hydroxyacylglutathione hydrolase, putative/glyoxalase II, putative similar to glyoxalase II isozyme [Arabidopsis thaliana] gi|2570338|gb|AAC49865 (68415.m03829) 921 Not regulated NC-NC-NC 263253_at At2g31370 bZIP transcription factor (POSF21) identical to GB: Q04088 (68415.m03832) 922 Not regulated NC-NC-NC 263255_at At1g10490 expressed protein contains Pfam profile PF05127: Putative ATPase (DUF699) (68414.m01181) 923 Not regulated NC-NC-NC 263256_at At1g10500 hesB-like domain-containing protein similar to IscA (putative iron-sulfur duster assembly protein) [Azotobacter vinelandii] GI: 2271523; contains Pfam profile PF01521: HesB-like domain (68414.m01182) 924 Not regulated NC-NC-NC 263235_at At1g10430 serine/threonine protein phosphatase PP2A-1 catalytic subunit (PP2A1) identical to SP|Q07098 Serine/threonine protein phosphatase PP2A-1 catalytic subunit (EC 3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile PF00149: Ser/Thr protein phosphatase (68414.m01175) 925 Not regulated NC-NC-NC 263206_at At1g10590 DNA-binding protein-related contains weak similarity to G-quartet DNA binding protein 3 [Tetrahymena thermophila] gi|4583503|gb|AAD25098 (68414.m01194) 926 Not regulated NC-NC-NC 263208_at At1g10480 zinc finger (C2H2 type) family protein contains Pfam profile: PF00096 zinc finger, C2H2 type (68414.m01180) 927 Not regulated NC-NC-NC 263209_at At1g10522 expressed protein (68414.m01185) 928 Not regulated NC-NC-NC 263222_at At1930640 protein kinase, putative contains protein kinase domain, Pfam: PF00069 (68414.m03747) 929 Not regulated NC-NC-NC 263224_at At1g30580 expressed protein (68414.m03741) 930 Not regulated NC-NC-NC 263226_at At1g30690 SEC14 cytosolic factor family protein/phosphoglyceride transfer family protein contains Pfam PF00650: CRAL/TRIO domain; contains Pfam PF03765: CRAL/TRIO, N-terminus; similar to cytosolic factor (Phosphatidylinositol/phosphatidylcholine transfer protein) (PI/PCTP) (SP: P24280) [Saccharomyces cerevisiae]; ESTs gb|T76582, gb|N06574 and gb|Z25700 come from this gene (68414.m03752) 931 Not regulated NC-NC-NC 263227_at At1g30750 expressed protein (68414.m03758) 932 Not regulated NC-NC-NC 263205_at At1g05500 C2 domain-containing protein similar to Ca2+-dependent lipid-binding protein (CLB1) GI: 2789434 from [Lycopersicon esculentum] (68414.m00561) 933 Not regulated NC-NC-NC 263179_at At1g05710 ethylene-responsive protein, putative similar to ethylene-inducible ER33 protein [Lycopersicon esculentum] gi|5669656|gb|AAD46413; identical to bHLH transcription factor (bHLH-alpha gene) (68414.m00592) 934 Not regulated NC-NC-NC 263180_at At1g05620 inosine-uridine preferring nucleoside hydrolase family protein similar to Chain A, Crystal Structure Of Nucleoside Hydrolase From Leishmania MajorGI: 8569431; contains Pfam profile PF01156: Inosine-uridine preferring nucleoside hydrolase (68414.m00583) 935 Not regulated NC-NC-NC 263181_at At1g05720 selenoprotein family protein contains Prosite PS00190: Cylochrome c family heme-binding site signature; similar to 15 kDa selenoprotein (GI: 12314088) {Homo sapiens} (68414.m00596) 936 Not regulated NC-NC-NC 263183_at At1g05570 callose synthase 1 (CALS1)/1,3-beta-glucan synthase 1 nearly identical to callose synthase 1 catalytic subunit [Arabidopsis thaliana] GI: 13649388 (68414.m00575) 937 Not regulated NC-NC-NC 263185_at At1g05520 transport protein, putative similar to Swiss-Prot: Q15436 protein transport protein Sec23A [Homo sapiens] (68414.m00585) 938 Not regulated NC-NC-NC 263193_at At1g38050 expressed protein (68414.m04479) 939 Not regulated NC-NC-NC 263172_at At1g54170 ataxin-2-related similar to SCA2 (GI: 1770390) [Homo sapiens]; similar to ataxin-2 (GI: 3005020) [Mus musculus] (68414.m06175) 940 Not regulated NC-NC-NC 263145_at At1g54090 exocyst subunit EXO70 family protein contains Pfam domain PF03081: Exo70 exocyst complex subunit (68414.m06164) 941 Not regulated NC-NC-NC 263152_at At1g54060 expressed protein similar to 6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum] GI: 18149189 (68414.m06160) 942 Not regulated NC-NC-NC 263154_at At1g54110 cation exchanger, putative (CAX10) Ca2+: Cation Antiporter (CaCA) Family member PMID: 11500563 (68414.m06168) 943 Not regulated NC-NC-NC 263156_at At1g54030 GDSL-motif lipase, putative similar to myrosinase-associated proteins GI: 1769968, GI: 1769970, GI: 1216391, GI: 1216389 from [Brassica napus]; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase (68414.m06156) 944 Not regulated NC-NC-NC 263162_at At1g54150 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68414.m06173) 945 Not regulated NC-NC-NC 263170_at At1g03000 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family (‘A’TPases ‘A’ssociated with diverse cellular ‘A’ctivities) (68414.m00271) 946 Not regulated NC-NC-NC 263113_at At1g03150 GCN5-related N-acetyltransferase (GNAT) family protein similar to SP|P07347 N-terminal acatyttransferase complex ARD1 subunit (Arrest-defective protein 1) {Saccharomyces cerevisiae}; contains Pfam profile PF00583: acetyltransferase. GNAT family (68414.m03292) 947 Not regulated NC-NC-NC 263120_at At1g78490 cytochrome P450 family protein similar to Cytochrome P450 90A1 (SP: Q42569) [Arabidopsis thaliana] (68414.m09149) 948 Not regulated NC-NC-NC 263122_at At1g78510 solanesyl diphosphate synthase (SPS) identical to solanesyl diphosphate synthase [Arabidopsis thaliana] GI: 19911233; contains Pfam profile PF00348: Polyprenyl synthetase (68414.m09151) 949 Not regulated NC-NC-NC 263126_at At1g78460 SOUL heme-binding family protein weak similarity to SOUL protein [Mus musculus] GI: 4886906; contains Pfam profile PF04832: SOUL heme-binding protein (68414.m09143) 950 Not regulated NC-NC-NC 263128_at At1g78600 zinc finger (B-box type) family protein similar to zinc finger protein GI: 3618316 from [Oryza sativa] (68414.m09160) 951 Not regulated NC-NC-NC 263129_at At1g78620 integral membrane family protein contains Pfam domain PF01940: Integral membrane protein (68414.m09162) 952 Not regulated NC-NC-NC 263132_at At1g78560 bile acid:sodium symporter family protein low similarity to SP|Q12908 lieal sodium/bile acid cotransporter {Homo sapiens}; contains Pfam profile PF01758: Sodium Bile acid Symporter family (68414.m09156) 953 Not regulated NC-NC-NC 263136_at At1g78580 alpha,alpha-trehalose-phosphate synthase, UDP-forming, putative/trehalose-6-phosphate synthase, putative/UDP-glucose- glucosephosphate glucosyltransferase, putative similar to trehalose-6-phosphate synthase SL-TPS/P [Selaginella lepidophylla] GI: 4100325; contains Pfam profiles PF00982: Glycosyltransferase family 20, PF02358: Trehalose-phosphatase (68414.m09158) 954 Not regulated NC-NC-NC 263137_at At1g78660 gamma-glutamyl hydrolase, putative/gamma-Glu-X carboxypeptidase, putative/conjugase, putative similar to SP|O65355 Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH) {Arabidopsis thaliana} (68414.m09167) 955 Not regulated NC-NC-NC 263111_s_at At1g65190 protein kinase family protein contains similarity to protein kinases (68414.m07391) 956 Not regulated NC-NC-NC 263096_at At2g16060 non-symbiotic hemoglobin 1 (HB1) (GLB1) identical to SP|O24520 Non-symbiotic hemoglobin 1 (Hb1) (ARAth GUB1) {Arabidopsis thaliana) (68415.m01841) 957 Not regulated NC-NC-NC 263097_at At2g16070 expressed protein (68415.m01842) 958 Not regulated NC-NC-NC 263074_at At2g17560 high mobility group protein gamma (HMGgamma)/HMG protein gamma nearly identical to HMG protein (HMGgamma) [Arabidopsis thaliana] GI: 2832355 (68415.m02032) 959 Not regulated NC-NC-NC 263076_at At2g17520 protein kinase family protein/Ire1 homolog-2 (IRE1-2) contains protein kinase domain, Pfam: PF00069; identical to Ire1 homolog-2 [Arabidopsis thaliana] GI: 15277139, cDNA Ire1 homolog-2 GI: 15277138 (68415.m02028) 960 Not regulated NC-NC-NC 263077_at At2g17510 ribonuclease II family protein similar to SP|P37202 Mitotic control protein dis3 {Schizasaccharomyces pombe}; contains Pfam profile PF00773: RNB-like protein (68415.m02025) 961 Not regulated NC-NC-NC 263047_at At2g17630 phosphoserine aminotransferase, putative similar to Phosphoserine aminotransferase, chloroplast precursor (PSAT) (SP: Q96255) [Arabidopsis thaliana]; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V (68415.m02039) 962 Not regulated NC-NC-NC 263019_at At1g23870 glycosyl transferase family 20 protein/trehalose-phosphatase family protein contains Pfam profile: PF02358 trehalose- phosphatase (68414.m03011) 963 Not regulated NC-NC-NC 263023_at At1g23960 expressed protein contains Pfam profile PF04776: Protein of unknown function (DUF626) (68414.m03025) 964 Not regulated NC-NC-NC 263035_at At1g23860 splicing factor RSZp21 (RSZP21)/9G8-like SR protein (SR221) nearly identical to 9G8-like splicing factor SRZ21 [Arabidopsis thaliana] GI: 3435096, RSZp21 protein [Arabidopsis thaliana] GI: 2582843 (68414.m03009) 965 Not regulated NC-NC-NC 263036_at At1g23890 NHL repeat-containing protein contains Pfam profile PF01436: NHL repeat (68414.m03013) 966 Not regulated NC-NC-NC 263037_at At1g23230 expressed protein (68414.m02906) 967 Not regulated NC-NC-NC 263044_at At1g23360 UbiE/COQ5 methyltransferase family protein similar to 2-hexaprenyl-1,4-naphthoquinone methyltransferase GB: BAA25267 GI: 2982680 from [Micrococcus luteus]; contains Pfam profile PF01209: methlytransferase, UbiE/COQ5 family (68414.m02921) 968 Not regulated NC-NC-NC 263010_at At1g23330 expressed protein (68414.m02917) 969 Not regulated NC-NC-NC 263014_at At1g23400 expressed protein (68414.m02930) 970 Not regulated NC-NC-NC 263015_at At1g23430 971 Not regulated NC-NC-NC 262985_s_at At1g23290 60S ribosomal protein L27A (RPL27aB) similar to 60S RIBOSOMAL PROTEIN L27A GB: P49637 GI: 1710530 from [Arabidopsis thaliana] (68414.m02913) 972 Not regulated NC-NC-NC 263000_at At1g54350 ABC transporter family protein similar to hypothetical ABC transporter ATP-binding protein GI: 9955395 from [Microcystis aeruginosa] (68414.m06196) 973 Not regulated NC-NC-NC 263001_at At1g54360 expressed protein (68414.m06197) 974 Not regulated NC-NC-NC 262954_at At1g54500 rubredoxin family protein similar to SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas}; contains Pfam profile PF00301: Rubredoxin (68414.m06216) 975 Not regulated NC-NC-NC 262955_at At1g54520 expressed protein (68414.m06218) 976 Not regulated NC-NC-NC 262956_at At1g54270 eukaryotic translation initiation factor 4A-2/eIF-4A-2 similar to eukaryotic translation initiation factor 4A GI: 19696 from [Nicotiana plumbeginifolia] (68414.m06187) 977 Not regulated NC-NC-NC 262957_s_at At1g54250 DNA-directed RNA polymerase I, II, and III, putative similar to SP|P52434 DNA-directed RNA potymerases I, II, and III 17.1 kDa polypeptide (EC 2.7.7.6) (RPB17) (RPB8) {Homo sapiens}; contains Pfam profile PF03870: RNA polymerase Rpb8 (68414.m06185) 978 Not regulated NC-NC-NC 262958_at At1g54410 dehydrin family protein contains Pfam domain, PF00257: Dehydrin (68414.m06207) 979 Not regulated NC-NC-NC 262959_at At1g54290 eukaryotic translation initiation factor SUI1, putative similar to P|P32911 Protein translation factor SUI1 {Saccharomyces cerevisiae}; contains Pfam profile PF01253: Translation initiation factor SUI1 (68414.m06189) 980 Not regulated NC-NC-NC 262960_at At1g54320 LEMS (ligand-effect modulator 3) family protein/CDC50 family protein Similar to GI: 11994416; GI: 4966357; GI: 4835763; GI: 9757735 from [Arabidopsis thaliana] (68414.m06193) 981 Not regulated NC-NC-NC 262964_at At1g54380 spliceosome protein-related contains Pfam domain, PF04938: Survival motor neuron (SMN) interacting protein 1 (SIP1) (68414.m06200) 982 Not regulated NC-NC-NC 262966_at At1g75760 ER lumen protein retaining receptor family protein similar to SP|P33946 ER lumen protein retaining receptor 1 (KDEL receptor 1) {Bos taurus}, contains Pfam profile PF00810: ER lumen protein retaining receptor (68414.m08799) 983 Not regulated NC-NC-NC 262975_at At1g75540 zinc finger (B-box type) family protein similar to zinc finger protein GB: BAA33202 GI: 3618312 from [Oryza sativa] (68414.m08779) 984 Not regulated NC-NC-NC 262978_at At1g75780 tubulin beta-1 chain (TUB1) nearly identical to SP|P12411 Tubulin beta-1 chrain {Arabidopsis thaliana} (68414.m08801) 985 Not regulated NC-NC-NC 262948_at At1g75560 zinc knuckle (CCHC-type) family protein contains Pfam domain, PF00098: Zinc knuckle (68414.m08781) 986 Not regulated NC-NC-NC 262929_at At1g65720 expressed protein (68414.m07459) 987 Not regulated NC-NC-NC 262930_at At1g65690 harpin-induced protein-related/HIN1-related/harpin-responsive protein-related similar to hin1 homolog (GI: 13122296) [Arabidopsis thaliana]; similar to hin1 (GI: 22830759) [Nicotiana tabacum]; contains 1 transmembrane domain; (68414.m07458) 988 Not regulated NC-NC-NC 262931_at At1g65700 small nuclear ribonucleoprotein putative/snRNP, putative/Sm protein, putative similar to U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens] SWISS-PROT: O95777 (68414.m07457) 989 Not regulated NC-NC-NC 262932_at At1g65820 microsomal glutathione s-transferase, putative similar to MGST3_HUMAN SP: O14880 (68414.m07469) 990 Not regulated NC-NC-NC 262937_at At1g79560 FtsH protease, putative contains similarity to chloroplast FtsH protease GI: 5804762 from [Nicotiana tabacum] (68414.m09275) 991 Not regulated NC-NC-NC 262944_at At1g79550 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase (68414.m09273) 992 Not regulated NC-NC-NC 262945_at At1g79510 expressed protein (68414.m09268) 993 Not regulated NC-NC-NC 262946_at At1g79390 expressed protein (68414.m09252) 994 Not regulated NC-NC-NC 262920_at At1g79500 2-dehydro-3-deoxyphosphooctonate aldolase/phospho-2-dehydro-3-deoxyoctonate aldolase/3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) identical to Swiss-Prot: Q9AV97 2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.12.16) (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 6-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) [Arabidopsis thaliana] (68414.m09265) 995 Not regulated NC-NC-NC 262899_at At1g59870 ABC transporter family protein similar to PDR5-like ABC transporter GI: 1514643 from [Spirodeta polyrhiza] (68414.m06745) 996 Not regulated NC-NC-NC 262906_at At1g59760 ATP-dependent RNA heticase, putative similar to SP|P47047 ATP-dependent RNA helicase DOB1 {Saccharomyces cerevisiae}, HUA enhancer 2 [Arabidopsis thaliana] GI: 16024938; contains Pfam profiles PF00270: DEAD/DEAH box helicese. PF00271: Helicase conserved C-terminal domain (68414.m06729) 997 Not regulated NC-NC-NC 262909_at At1g59830 serine/threonine protein phosphatase PP2A-2 catalytic subunit (PP2A2) identical to SP|Q07099 Serine/threonine protein phosphatase PP2A-2 catalytic subunit (EC 3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile PF00149: Ser/Thr protein phosphatase (68414.m06736) 998 Not regulated NC-NC-NC 262910_at At1g59710 expressed protein contains Pfam profile: PF04601 protein of unknown function (DUF569 (68414: m06718) 999 Not regulated NC-NC-NC 262913_at At1g59960 aldo/keto reductase, putative similar to NADPH-dependent codeinone reductase GI: 6478210 [Papaver somniferum] , NAD(P)H dependent 6′-deoxychalcone synthase [Glycine max][GI: 187213] (68414.m06754) 1000 Not regulated NC-NC-NC 262859_at At1g64790 translational activator family protein similar to HsGCN1 [Homo sapiens] GI: 2282576 (68414.m07346) 1001 Not regulated NC-NC-NC 262860_at At1g64810 expressed protein contains Pfam PF05634: Arabidopsis thaliana protein of unknown function (DUF794) (68414.m07348) 1002 Not regulated NC-NC-NC 262875_at At1g64970 expressed protein (68414.m07364) 1003 Not regulated NC-NCNC 262876_at At1g64750 DSS1/SEM1 family protein contains Pfam profile PF05160: DSS1/SEM1 family (66414.m07341) 1004 Not regulated NC-NC-NC 262878_at At1g64770 expressed protein (68414.m07344) 1005 Not regulated NC-NC-NC 262880_at At1g64880 ribosomal protein S5 family protein contains similarity to 30S ribosomal protein S5 GI: 6969105 from [Campylobacter jejuni] (68414.m07355) 1006 Not regulated NC-NC-NC 262881_at At1g64890 integral membrane transporter family protein contains 11 transmembrane domains; contains Pfam PF03092: BT1 family; contains TIGRFAMS TIGR00788: folate/biopterin transporter (68414.m07356) 1007 Not regulated NC-NC-NC 262882_at At1g64900 cytoduome P450, putative similar to cytochrome p450 GI: 438240 from [Solanum melongena] (68414.m07357) 1008 Not regulated NC-NC-NC 262885_at At1g64740 tubulin alpha-1 chain (TUA1) nearly identical to SP|P11139 Tubulin alpha-1 chain {Arabidopsis thaliana} (68414.m07340) 1009 Not regulated NC-NC-NC 262830_at At1g14700 purple acid phosphatase, putative contains Pfam profile: PF00149 calcineurin-like phosphoesterase; similar to purple acid phosphatase (GI: 20257479) [Arabidopsis thaliana] (68414.m01757) 1010 Not regulated NC-NC-NC 262837_at At1g14830 dynamin-like protein C (DL1C) nearly identical to dynamin-like protein C [Arabidopsis thaliana] GI: 19589772 (68414.m01774) 1011 Not regulated NC-NC-NC 262841_at At1g14810 semialdehyde dehydrogenase family protein similar to SP: O31219 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ASA dehydrogenase) (ASADH) {Legionella pneumophila}; contains Pfam profiles PF02774: Semialdehyde dehydrogenase dimerisation domain, PF01118: Semialdehyde dehydrogenase NAD binding domain (68414.m01770) 1012 Not regulated NC-NC-NC 262842_at At1g14720 xyloglucan: xyloglucosyl transferase/xyloglucan endotransglycosylase/endo-xyloglucan transferase (XTR2) identical to endoxyloglucan transferase [Arabidopsis thaliana] GI: 5533311 (68414.m01760) 1013 Not regulated NC-NC-NC 262844_at At1g14890 invertase/pectin methylesterase inhibitor family protein similar to pectinesterase GB: X85216 GI: 732912 SP|Q43111 [Phaseolus vulgaris] , SP|Q42534 from Arabidopsis thaliana; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor (68414.m01780) 1014 Not regulated NC-NC-NC 262845_at At1g14740 expressed protein (68414.m01762) 1015 Not regulated NC-NC-NC 262848_at At1g14685 expressed protein (68414.m01748) 1016 Not regulated NC-NCNC 262796_at At1g20850 cysteine endopeptidase, papain-type (XCP2) identical to papain-type cysteine endopeptidase XCP2 GI: 6708183 from [Arabidopsis thaliana] (68414.m02612) 1017 Not regulated NC-NC-NC 262797_at At1g20840 transporter-related low similarity to D-xylose proton-symporter [Lactobacillus brevis] GI: 2895856; contains Pfam profile PF00083: major facilitator superfamily protein (68414.m02611) 1018 Not regulated NC-NC-NC 262801_at At1g21010 expressed protein (68414.m02829) 1019 Not regulated NC-NC-NC 262805_at At1g20900 DNA-binding protein-related contains Pfam domain PF03479: Domain of unknown function (DUF296), found in AT-hook motifs Pfam: PF02178 (68414.m02617) 1020 Not regulated NC-NC-NC 262813_at At1g11670 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI: 12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family; EST gb|W43487 comes from this gene (68414.m01340) 1021 Not regulated NC-NC-NC 262814_at At1g11660 heat shock protein, putative strong similarity to gb|Z70314 heat-shock protein from Arabidopsis thaliana and is a member of the PF|00012 Hsp70 protein family (68414.m01339) 1022 Not regulated NC-NC-NC 262823_at At1g11750 ATP-dependent Clp protease proteolytic subunit (ClpP) identical to ATP-dependent Clp protease proteolytic subunit GI: 2827888 from [Arabidopsis thaliana]; contains Pfam profile PF00574: Clp protease; contains TIGRfam profile TIGR00493: ATP-dependent Clp protease, proteolytic subunit ClpP (68414.m01348) 1023 Not regulated NC-NC-NC 262826_at At1g13080 cytothome P450 family protein identical to gb|O78605 cytochrome P450 monooxygenase from Arabidopsis thaliana and is a member of the PF|00067 Cytochrome P450 family. ESTs 91|Z18072, gb|Z35218 and gb|T43466 come from this gene (68414.m01516) 1024 Not regulated NC-NC-NC 262780_at At1g13090 cytochrome P450 71B28, putative (CYP71B28) Identical to Cytochrome P450 (SP: Q9SAE3) [Arabidopsis thaliana]; strong similarity to gb|X97864 cytochrome P450 from Arabidopsis thaliana and is a member of the PF|00067 Cytochrome P450 family. ESTs gb|N65665, gb|T14112, gb|T76255, gb|T20906 and gb|AI100027 come from this gene (68414.m01518) 1025 Not regulated NC-NC-NC 262781_s_at At1g13060 20S proteasome beta subunit E1 (PBE1) (PRCE) identical to GB: O23717; identical to cDNA proteasome subunit prce GI: 2511595 (68414.m01514) 1026 Not regulated NC-NC-NC 262782_at At1g13195 zinc finger (C3HC4-type RING finger) family protein similar to MTD2 [Medicago truncatula] GI: 9294812; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) (68414.m01530) 1027 Not regulated NC-NC-NC 262786_at At1g10740 expressed protein (68414.m01225) 1028 Not regulated NC-NC-NC 262790_at At1g10840 eukaryotic translation initiation factor 3 subunit 3/eIF-3 gamma/eIF3h (TIF3H1) identical to SP|Q9C5Z2 Eukaryotic translation initiation factor 3 subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h) {Arabidopsis thaliana}; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family (68414.m01245) 1029 Not regulated NC-NC-NC 262791_at At1g10830 sodium symporter-related contains five transmembrane domains; Interpro IPR001991 Sodium:dicarboxylate symporter, EST gb|F13926 comes from this gene (68414.m01244) 1030 Not regulated NC-NC-NC 262736_at At1g28570 GDSL-motif lipase, putative similar to lipase [Arabidopsis thaliana] GI: 1145627; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family (68414.m03517) 1031 Not regulated NC-NC-NC 262745_at At1g28600 lipase, putative similar to lipase [Arabidopsis thaliana] GI: 1145627; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family (68414.m03522) 1032 Not regulated NC-NC-NC 262749_at At1g28580 GDSL-motif lipase, putative similar to lipase [Arabidopsis thaliana] GI: 1145627; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family (68414.m03519) 1033 Not regulated NC-NC-NC 262750_at At1g28710 expressed protein similar to GI: 2827651, GI: 7527728, GI: 4406788, GI: 6063544. GI: 10764853 from [Arabidopsis thaliana] (68414.m03536) 1034 Not regulated NC-NC-NC 262754_at At1g16350 inosine-5′-monophosphate dehydrogenase, putative strong similarity to SP|P47996 gb|L34684 inosine monophosphate dehydrogenase (IMPDH) from Arabidopsis thaliana member of the PF|00478 IMP dehydrogenase family (68414.m01956) 1035 Not regulated NC-NC-NC 262705_at At1g16260 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain (68414.m01947) 1036 Not regulated NC-NC-NC 262706_at At1g16280 DEAD/DEAH box helicase, putative similar to gb|L13612 DEAD-box protein (dbp45A) from Drosophila melanogaster and is a member of PF|00270 DEAD/DEAH box helicase family (68414.m01949) 1037 Not regulated NC-NC-NC 262707_at At1g16290 expressed protein (68414.m01950) 1038 Not regulated NC-NC-NC 262708_at At1g16190 DNA repair protein RAD23, putative similar to DNA repair by nucleotide excision (NER) RAD23 protein, isoform II GI: 1914685 from [Daucus carota] (68414.m01939) 1039 Not regulated NC-NC-NC 262710_at At1g16210 expressed protein ESTs gb|T04357 and gb|AA595092 come from this gene (68414.m01941) 1040 Not regulated NC-NC-NC 262712_at At1g16460 mercaptopyruvate sulfurtransferase (MST2) (RDH2) identical to mercaptopyruvate sulfurtransferase GI: 6009983 and thiosulfate sulfurtransferase GI: 5817004 from [Arabidopsis thaliana]; contains PF|00581 Rhodanese-like domain (68414.m01968) 1041 Not regulated NC-NC-NC 262721_at At1g43560 thioredoxin family protein contains Pfam profile: PF00085 Thioredoxin; similar to thioredoxin GI: 142153 from [Synechococcus PCC6301] (68414.m05000) 1042 Not regulated NC-NC-NC 262725_at At1g43580 expressed protein (68414.m05003) 1043 Not regulated NC-NC-NC 262727_at At1g75800 pathogenesis-related thaumatin family protein similar to receptor serine/threonine kinase PR5K [Arabidopsis thaliana] GI: 1235680; contains Pfam profile: PF00314 Thaumatin family (68414.m08805) 1044 Not regulated NC-NC-NC 262700_at At1g76020 expressed protein (68414.m08826) 1045 Not regulated NC-NC-NC 262676_at At1g75950 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 (At1) E3 ubiquitin ligase; skp1a; identical to Skp1a GI: 3068807, Skp1p GI: 1432083 and UIP1 GI: 3719209 from [Arabidopsis thaliana]; contains Pfam profiles PF01466: Skp1 family, dimensation domain and PF03931: Skp1 family, tetramerisation domain; (68414.m08821) 1046 Not regulated NC-NC-NC 262678_at At1g75810 expressed protein (68414.m08806) 1047 Not regulated NC-NC-NC 262682_at At1g75900 family II extracellular lipase 3 (EXL3) EXL3 (PMID: 11431566); similar to anter-specific proline-rich protein (APG) SP: P40602 [Arabidopsis thaliana] (68414.m08816) 1048 Not regulated NC-NC-NC 262684_s_at At1g76030 vacuolar ATP synthase subunit B/V-ATPase B subunit/vacuolar proton pump B subunit/V-ATPase 57 kDa subunit identical to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana} (68414.m08827) 1049 Not regulated NC-NC-NC 262686_at At1g75990 26S proteasome regulatory subunit S3, putative (RPN3) similar to 26S proteasome regulatory subunit S3 SP: P93768 [Nicotiana tabacum (Common tobacco)] (68414.m08824) 1050 Not regulated NC-NC-NC 262691_at At1g62740 stress-inducible protein, putative similar to sti (stress inducible protein) [Glycine max] GI: 872116; contains Pfam profile PF00515 TPR Domain (68414.m07081) 1051 Not regulated NC-NC-NC 262693_at At1g62780 expressed protein (68414.m07086) 1052 Not regulated NC-NC-NC 262667_at At1g62810 copper amine oxidase, putative similar to copper amine oxidase [Cicer arietinum] gi|3819099|emb|CAA08855 (68414.m07091) 1053 Not regulated NC-NC-NC 262639_at At1g62820 calmodulin, putative similar to calmodulin SP: P04465 from [Trypanosoma brucei gambiense]; contains INTERPRO: IPR002048 calcium-binding EF-hand domain (68414.m07092) 1054 Not regulated NC-NC-NC 262645_at At1g62750 elongation factor Tu family protein similar to elongation factor G SP: P34811 [Glycine max (Soybean)] (68414.m07082) 1055 Not regulated NC-NC-NC 262660_at At1g14000 protein kinase family protein/ankyrin repeat family protein contains Pfam profiles: PF00069 protein kinase domain, PF00023 ankyrin repeat (68414: m01652) 1056 Not regulated NC-NC-NC 262607_at At1g13990 expressed protein (68414.m01650) 1057 Not regulated NC-NC-NC 262609_at At1g13930 expressed protein weakly similar to drought-induced protein SDi-6 (PIR: S71562) common sunflower (fragment) (68414.m01635) 1058 Not regulated NC-NC-NC 262612_at At1g14150 oxygen evolving enhancer 3 (PsbQ) family protein extrinsic pll protein; contains Pfam profile PF05757: Oxygen evolving enhancer protein 3 (PsbQ) (68414.m01672) 1059 Not regulated NC-NC-NC 262618_at At1g06560 NOL1/NOP2/sun family protein contains Pfam profile PF01189: NOL1/NOP2/sun family (68414.m00695) 1060 Not regulated NC-NC-NC 262621_at At1g06530 myosin heavy chain-related similar to myosin heavy chain (GI: 1408194) {Placopecten magellanicus}; similar to Myosin heavy chain, clone 203 (Fragment) (SP: P39922){Hydra attenuata}; contains one transmembrane domain (68414.m00692) 1061 Not regulated NC-NC-NC 262624_at At1g06450 CCR4-NOT transcription complex protein, putative similar to SWISS-PROT: Q9UFF9 CCR4-NOT transcription complex, subunit 8 (CAF1-like protein, CALIFp) [Homo sapiens] (68414.m00683) 1062 Not regulated NC-NC-NC 262626_at At1g06430 FtsH protease, putative similar to zinc dependent protease GI: 7650138 from [Arabidopsis thaliana] (68414: m00680) 1063 Not regulated NC-NC-NC 262629_at At1g06460 31.2 kDa small heat shock family protein/hsp20 family protein contains Pfam profile: PF00011 Hsp20/alpha crystallin family (68414.m00684) 1064 Not regulated NC-NC-NC 262632_at At1g06680 photosystem II oxygen-evolving complex 23 (OEC23) JBC 14: 211-238 (2002); identical to 23 kDa polypeptide of oxygen-evolving comlex (OEC) GB: CAA66785 GI: 1769905 [Arabidopsis thaliana] (68414.m00708) 1065 Not regulated NC-NC-NC 262634_at At1g06690 aldo/keto reductase family protein contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family (68414.m00710) 1066 Not regulated NC-NC-NC 262638_at At1g06650 2-oxoglutarate-dependent dioxygenase, putative similar to 2A6 (GI: 599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967); contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family (68414.m00704) 1067 Not regulated NC-NC-NC 262581_at At1g15370 expressed protein (68414.m01840) 1068 Not regulated NC-NC-NC 262583_at At1g15110 phosphatidyl serine synthase family protein contains Pfam profile: PF03034 phosphatidyl serine synthase (68414.m01804) 1069 Not regulated NC-NC-NC 262584_at At1g15440 transducin family protein/WD-40 repeat family protein Strong similarity to gb X95263 Periodic tryptophan protein 2 gene (PWP2) from Homo sapiens and contains 6 WD40, G-beta repeat domains (68414.m01855) 1070 Not regulated NC-NC-NC 262590_at At1g15100 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68414.m01803) 1071 Not regulated NC-NC-NC 262592_at At1g15400 expressed protein ESTs gb|H37295 and gb|R64895 come from this gene (68414.m01844) 1072 Not regulated NC-NC-NC 262593_at At1g15120 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative/mitochondrial hinge protein, putative similar to SP|P48504 Ubiquinol-cytochrome C reductase complex 7.8 kDa protein (EC 1.10.2.2) (Mitochondrial hinge protein) (CR7) {Solanum tuberosum}; contains Pfam profile PF02320: Ubiquinol-cytochrome C reductase hinge protein (68414.m01805) 1073 Not regulated NC-NC-NC 262594_at At1g15250 60S ribosomal protein L37 (RPL37A) almost identical to GB: Q43292 (68414.m01825) 1074 Not regulated NC-NC-NC 262598_at At1g15260 expressed protein EST gb|N65467 comes from this gene (68414.m01826) 1075 Not regulated NC-NC-NC 262599_at At1g15350 expressed protein (68414.m01836) 1076 Not regulated NC-NC-NC 262600_at At1g15340 methyl-CpG-binding domain-containing protein contains Pfam profile PF01429: Methyl-CpG binding domain (68414.m01835) 1077 Not regulated NC-NC-NC 262602_at At1g15270 expressed protein ESTs gb|AA650895, gb|AA720043 and gb|R29777 come from this gene (68414.m01827) 1078 Not regulated NC-NC-NC 262572_at At1g15140 oxidoreductase NAD-binding domain-containing protein Contains Pfam profile PF00175: Oxidoreductase NAD-binding domain; ESTs gb|H76345 and gb|AA651465 come from this gene (68414.m01808) 1079 Not regulated NC-NC-NC 262573_at At1g15390 peptide deformylase, mitochondrial/polypeptide deformylase 1A (PDF1A) nearly identical to SP|Q9FV53 Peptide deformylase, mitochondrial precursor (EC 3.5.1.88) (PDF) (Polypeptide deformylase) {Arabidopsis thaliana}; contains Pfam profile PF01327: polypeptide deformylase; supporting cDNA gi|11320951|gb|AF250959.1|AF250959 (68414.m01843) 1080 Not regulated NC-NC-NC 262574_at At1g15230 expressed protein ESTs gb|R30529, gb|Z48463, gb|Z48467, gb|AA597369 and gb|AA394772 come from this gene (68414.m01823) 1081 Not regulated NC-NC-NC 262544_at At1g15425 1082 Not regulated NC-NC-NC 262551_at At1g31340 ubiquitin family protein contains INTERPRO: IPR000626 ubiquitin domain (68414.m03835) 1083 Not regulated NC-NC-NC 262557_at At1g31330 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III (68414.m03833) 1084 Not regulated NC-NC-NC 262562_at At1g34220 expressed protein contains Pfam profile: PF03398 eukaryotic protein of unknown function, DUF292 (68414.m04246) 1085 Not regulated NC-NC-NC 262563_at At1g34210 somatic embryogenesis receptor-like kinase 2 (SERK2) nearly identical to somatic embryogenesis receptor-like kinase 2 [Arabidopsis thaliana] GI: 14573457; contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain; identical to cDNA somatic embryogenesis receptor-like kinase 2 (SERK2) GI: 14573456 (68414.m04245) 1086 Not regulated NC-NC-NC 262566_at At1g34310 transcriptional factor B3 family protein/auxin-responsive factor AUXAAA-related contains Pfam profile: PF02309 AUX/IAA family (68414.m04257) 1087 Not regulated NC-NC-NC 262567_at At1g34300 lectin protein kinase family protein contains Pfam domains, PF01453: Lectin (probable mannose binding) and PF00069: Protein kinase domain (68414.m04256) 1088 Not regulated NC-NC-NC 262514_at At1g34190 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) protein; similar to NAM protein GI: 6066595 [Petunia hybrida]; nam-like protein 9 (GI: 21105746) [Petunia x hybrida]; NAC1 GI: 7716952 [Medicago truncatula] (68414.m04241) 1089 Not regulated NC-NC-NC 262519_at At1g17160 plkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase (68414.m02092) 1090 Not regulated NC-NC-NC 262521_at At1g17130 cell cycle control protein-related contains similarity to Swiss-Prot: Q9P7C5 cell cycle control protein cwf16 [Schizosaccharomyces pombe] (68414.m02087) 1091 Not regulated NC-NC-NC 262523_at At1g17110 ubiquitin-specific protease 15 (UBP15) almost identical to ubiquitin-specific protease 15 GI: 11993475 [Arabidopsis thaliana], 7 amino acid difference (68414.m02085) 1092 Not regulated NC-NC-NC 262524_at At1g17070 D111/G-patch domain-containing protein Similar to SP|Q9ERA6 Tuftelin-interacting protein 11 {Mus musculus}; contains Pfam profile PF01585: G-patch domain (68414.m02077) 1093 Not regulated NC-NC-NC 262526_at At1g17050 geranyl diphosphate synthase, putative/GPPS. putative/dimethylallyltransferase, putative/prenyl transferase, putative similar to GI: 11322965; Except for first 55 amino acids, 52% identical to Prenyl transferase (Cyanophora paradoxa) (gi 99282). Location of est 120E9T7 (gb|T43950) (68414.m02073) 1094 Not regulated NC-NC-NC 262532_at At1g17210 expressed protein distantly related to dentin phosphoryn [Homo sapiens] (GI: 4322670) (68414.m02097) 1095 Not regulated NC-NC-NC 262537_s_at At1g17280 ubiquitin-conjugating enzyme, putative similar to ubiquitin conjugating enzyme 6 from [Homo sapiens] GI: 14029267, [Mus musculus] GI: 14029263; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme (68414.m02105) 1096 Not regulated NC-NC-NC 262539_at At1g17200 integral membrane family protein Location of est 136A23T7 (gb|T45563); contains TIGRFAM TIGR01569: plant integral membrane protein TIGR01569; contains Pfam PF04535: Domain of unknown function (DUF588) (68414.m02096) 1097 Not regulated NC-NC-NC 262482_at At1g17020 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to flavonol synthase [Petunia x hybrida][GI: 311658], leucoanthocyanidin dioxygenase [Malus domestica][SP|P51091]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain (68414.m02067) 1098 Not regulated NC-NC-NC 262487_at At1g21610 wound-responsive family protein similar to wound-responsive protein 14.05 (GI: 16506638) [Castanea sativa]; ESTs gb T42839 and gb|AA395192 come from this gene (68414.m02702) 1099 Not regulated NC-NC-NC 262488_at At1g21820 1100 Not regulated NC-NC-NC 262489_at At1g21830 expressed protein EST gb|T21171 comes from this gene (68414.m02731) 1101 Not regulated NC-NC-NC 262497_at At1g21720 20S proteasome beta subunit C1 (PBC1).(PRCT) almost identical to GB: AAC32069 from [Arabidopsis thaliana], EST gb|T76747 comes from this gene; identical to cDNA proteasome subunit prct GI: 2511567 (68414.m02719) 1102 Not regulated NC-NC-NC 262499_at At1g21770 expressed protein (68414.m02725) 1103 Not regulated NC-NC-NC 262500_at At1g21760 F-box family protein Contains PF|00646 F-box domain. ESTs gb|Z37267, gb|R90412, gb|Z37268 and gb|T88189 come from this gene similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1: At5g67250 (68414.m02724) 1104 Not regulated NC-NC-NC 262501_at At1g21690 replication factor C 37 kDa, putative Similar to SWISS-PROT: P35249 activator 1 37 kDa subunit (Replication factor C 37 kDa subunit, A1 37 kDa subunit, RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains Pfam domain, PF00004: ATPase, AAA family (88414.m02714) 1105 Not regulated NC-NC-NC 262503_at At1g21670 expressed protein similar to TolB protein precursor (SP: P50601) {Pseudomonas aeruginosa} (68414.m02712) 1106 Not regulated NC-NC-NC 262451_at At1g11140 1107 Not regulated NC-NC-NC 262453_at At1g11240 expressed protein (68414.m01287) 1108 Not regulated NC-NC-NC 262455_at At1g11310 seven transmembrane MLO family protein/MLO-like protein 2 (MLO2) identical to membrane protein Mlo2 [Arabidopsis thaliana] gi|14091574|gb|AAK53795; similar to Mlo [Hordeum vulgare subsp. vulgare] gi|1877221|emb|CAB06083 SWISS-PROT: P93766 (68414.m01299) 1109 Not regulated NC-NC-NC 262457_at At1g11200 expressed protein contains Pfam profile PF03619: Domain of unknown function (68414.m01283) 1110 Not regulated NC-NC-NC 262458_at At1g11280 S-locus protein kinase, putative similar to receptor protein kinase [Ipomoea trifida] gi|836954|gb|AAC23542; contains protein kinase domain, Pfam: PF00069; contains S-locus glycoprotein family domain, Pfam: PF00954 (68414.m01294) 1111 Not regulated NC-NC-NC 262473_at At1g50250 cell division protein ftsH homolog 1, chloroplast (FTSH1) (FTSH) identical to SP: Q39102 Cell division protein ftsH homolog 1. chloroplast precursor (EC 3.4.24.—) [Arabidopsis thaliana] (68414.m05634) 1112 Not regulated NC-NC-NC 262476_at At1g50370 serine/threonine protein phosphatase, putative nearly identical to serine/threonine protein phosphatase [Arabidopsis thaliana] GI: 14582206 (68414.m05646) 1113 Not regulated NC-NC-NC 262417_at At1g50170 expressed protein similar to Cbi protein (GI: 3724039) [Bacillus megaterium]; similar to YlnE protein (GI: 2462961) [Bacillus subtilis]; similar to NirR (GI: 4433637) [Staphylococcus camosus] (68414.m05626) 1114 Not regulated NC-NC-NC 262418_at At1g50320 thioredoxin X nearly identical to thioredoxin X GB: AAF15952 GI: 6539616 from [Arabidopsis thaliana] (68414.m05641) 1115 Not regulated NC-NC-NC 262422_at At1g23440 pyrrolidone-carboxylate peptidase family protein similar to Pyrrolidone-carboxylate peptidase (Swiss-Prot: O58321) [Pyrococcus horikoshii]; contains Prosite PS00141: Eukaryotic and viral aspartyl proteases active site (68414.m02936) 1116 Not regulated NC-NC-NC 262426_s_at At1g47630 1117 Not regulated NC-NC-NC 262427_s_at At1g47600 glycosyl hydrolase family 1 protein contains Pfam PF00232: Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6- phospho-beta-galactosidase; similar to thioglucosidase (GI: 871992) [Arabidopsis thaliana] (68414.m05285) 1118 Not regulated NC-NC-NC 262432_at At1g47530 ripening-responsive protein, putative similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI: 12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family (68414.m05275) 1119 Not regulated NC-NC-NC 262434_at At1g47670 amino acid transporter family protein similar to lysine and histidine specific transporter GI: 2576361 from [Arabidopsis thaliana]; contains Pfam profile PF01490: Transmembrane amino acid transporter protein (68414.m05296) 1120 Not regulated NC-NC-NC 262442_at At1g47420 expressed protein identical to hypothetical protein GB: AAD46040 GI: 5668814 from [Arabidopsis thaliana] (68414.m05252) 1121 Not regulated NC-NC-NC 262414_at At1g49430 long-chain-fatty-acid--CoA ligase/long-chain acyl-CoA synthetase nearly identical to acyl CoA synthetase (MF45P) GI: 1617268 from [Brassica napus] (68414.m05541) 1122 Not regulated NC-NC-NC 262415_at At1g49400 ribosomal protein S17 family protein similar to 40S ribosomal protein S17 GI: 1620985 from [Nicotiana plumbaginitolia] (68414.m05537) 1123 Not regulated NC-NC-NC 262388_at At1g49320 BURP domain-containing protein similarity to SP|Q08298 Dehydration-responsive protein RD22 precursor {Arabidopsis thaliana}; contains Pfam profile PF03181: BURP domain (68414.m05528) 1124 Not regulated NC-NC-NC 262394_at At1g49510 expressed protein (68414.m05549) 1125 Not regulated NC-NC-NC 262396_at At1g49470 expressed protein contains Pfam profile PF04819: Family of unknown function (DUF716) (Plant viral-response family) (68414.m05544) 1126 Not regulated NC-NC-NC 262397_at At1g49380 cytochrome c biogenesis protein family contains Pfam PF05140: ResB-like family; similar to CCS1 (GI: 2749939) [Chlamydomonas reinhardtii]; similar to Ccs1 (GI: 6137102) [Synechococcus sp. PCC 6301] (68414.m05535) 1127 Not regulated NC-NC-NC 262400_at At1g49480 transcriptional factor B3 family protein contains Pfam profile PF02362: B3 DNA binding domain (68414.m05546) 1128 Not regulated NC-NC-NC 262401_at At1g49300 Ras-related GTP-binding protein, putative contains Pfam profile: PF00071 Ras family (68414.m05526) 1129 Not regulated NC-NC-NC 262407_at At1g34630 expressed protein (68414.m04305) 1130 Not regulated NC-NC-NC 262408_at At1g34750 protein phosphatase 2C, putative/PP2C, putative similar to GB: AAD17805 from (Lotus japonicus) (Proc. Natl. Acad. Sci. U.S.A. 96 (4), 1738-1743 (1999)) (68414.m04321) 1131 Not regulated NC-NC-NC 262413_at At1g34780 protein disulfide isomerase-related contains weak similarity to Pfam: P08003 protein disulfide isomerase A4 precursor (Protein ERp- 72, ERp72) [Mus musculus] (68414.m04329) 1132 Not regulated NC-NC-NC 262355_at At1g72820 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein (68414.m08419) 1133 Not regulated NC-NC-NC 262367_at At1g73030 SNF7 family protein contains Pfam domain, PF03357: SNF7 family (68414.m08445) 1134 Not regulated NC-NC-NC 262368_at At1g73060 expressed protein (68414.m08448) 1135 Not regulated NC-NC-NC 262354_at At1g64200 vacuolar ATP synthase subunit E, putative/V-ATPase E subunit, putative/vacuolar proton pump E subunit, putative similar to SP|Q39258 Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit) {Arabidopsis thaliana}; contains Pfam profile PF01991: ATP synthase (E/31 kDa) subunit (68414.m07273) 1136 Not regulated NC-NC-NC 262329_at At1g64090 reticulon family protein (RTNLB3) weak similarity to SP|O95197 Reticulon protein 3 (Neuroendocrine-specific protein-like) {Homo sapiens}; contains Pfam profile PF02453: Reticulon (68414.m07260) 1137 Not regulated NC-NC-NC 262340_at At1g64105 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain (68414.m07262) 1138 Not regulated NC-NC-NC 262343_at At1g64040 serine/threonine protein phosphatase PP1 isozyme 3 (TOPP3)/phosphoprotein phosphatase 1 identical to SP|P48483 Serine/threonine protein phosphatase PP1 isozyme 3 (EC 3.1.3.16) {Arabidopsis thaliana}, phosphoprotein phosphatase 1 GB: AAA32838 GI: 166799 from [Arabidopsis thaliana] (68414.m07254) 1139 Not regulated NC-NC-NC 262346_at At1g63980 D111/G-patch domain-containing protein contains Pfam profile PF01585: G-patch domain (68414.m07247) 1140 Not regulated NC-NC-NC 262349_at At2g48130 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 (68415.m06025) 1141 Not regulated NC-NC-NC 262319_s_at At1g27540 F-box family protein similar to F-box protein family, AtFBX7 (GI: 20197899) [Arabidopsis thaliana]; confirmed by FLcDNA GI: 16604421; contains uncharacterized Arabidoppsis domain shared by 33 Arabidopsis proteins (68414.m03357) 1142 Not regulated NC-NC-NC 262297_at At1g27600 glycosyl transferase family 43 protein similar to Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1, Rattus norvegicus [SP|O35789], Homo sapiens [SP|Q9P2W7]; contains Pfam domain Glycosyltransferase family 43 [PF03380] (68414.m03367) 1143 Not regulated NC-NC-NC 262298_at At1g27530 expressed protein Similar to gb|AF151884 CGI-126 protein from Homo sapiens. EST gb|Z18048 comes from this gene (68414.m03356) 1144 Not regulated NC-NC-NC 262304_at At1g70890 major latex protein-related/MLP-related low similarity to major latex protein {Papaver somniferum}[GI: 294062]; contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family (68414.m08179) 1145 Not regulated NC-NC-NC 262306_s_at At1g70980 asparaginyl-tRNA synthetase, cytoplasmic, putative/asparagine-tRNA ligase, putative similar to SYNC1 protein GI: 5670315 [SP|Q9SW96] from [Arabidopsis thaliana] (68414.m08188) 1146 Not regulated NC-NC-NC 262308_at At1g71010 phosphatidylinositol-4-phosphate 5-kinase family protein low similarity to phosphatidylinositol 3,5-kinase [Candida albicans] GI: 14571648; contains Pfam profile PF01504: Phosphatidylinositol-4-phosphate 5-Kinase (68414.m08192) 1147 Not regulated NC-NC-NC 262312_at At1g70830 Bet v I allergen family protein similar to Csf-2 [Cucumis sativus][GI: 5762258][J Am Soc Hortic Sci 124, 136-139 (1999)]; contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family (68414.m08170) 1148 Not regulated NC-NC-NC 262288_at At1g70760 inorganic carbon transport protein-related contains weak similarity to Swiss-Prot: P27372 inorganic carbon transport protein [Synechocystis sp.] (68414.m08156) 1149 Not regulated NC-NC-NC 262289_at At1g70770 expressed protein (68414.m08158) 1150 Not regulated NC-NC-NC 262260_at At1g70850 Bet v I allergen family protein similar to Csf-2 [Cucumis sativus][GI: 5762258][J Am Soc Hortic Sci 124, 136-139 (1999)] contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family (68414.m08173) 1151 Not regulated NC-NC-NC 262280_at At1g68580 agenet domain-containing protein/bromo-adjacent homology (BAH) domain-containing protein contains Pfam profile PF01426; BAH domain and PF05641: Agenet domain (68414.m07835) 1152 Not regulated NC-NC-NC 262281_at At1g68570 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family (68414.m07834) 1153 Not regulated NC-NC-NC 262283_at At1g68590 plastid-specific 30S ribosomal protein 3, putative/PSRP-3, putative similar to SP|P82412 Plastid-specific 30S ribosomal protein 3, chloroplast precursor (PSRP-3) {Spinacia oleracea}; contains Pfam profile PF04839: Plastid and cyanobacterial ribosomal protein (PSRP-3/Ycf65) (68414.m07838) 1154 Not regulated NC-NC-NC 262286_at At1g68585 expressed protein (68414.m07837) 1155 Not regulated NC-NC-NC 262237_at At1g48320 thioesterase family protein similar to ComAB [Bacillus licheniformis] GI: 1834379; contains Pfam profile PF03061: thioesterase family protein (68414.m05397) 1156 Not regulated NC-NC-NC 262251_at At1g53760 expressed protein (68414.m06117) 1157 Not regulated NC-NC-NC 262253_s_at At1g53880 eukaryotic translation initiation factor 2B family protein/elF-2B family protein similar to SP|Q64270 Translation initiation factor elF- 2B alpha subunit {Rattus norvegicus}; contains Pfam profiles PF04525: Protein of unknown function (DUF567), PF01008: Initiation factor 2 subunit family (68414.m06133) 1158 Not regulated NC-NC-NC 262254_at At1g53920 GDSL-motif lipase/hydrolase family protein similar to Anther-specific proline-rich proteins SP|P40603 SP|P40602 from {Arabidopsis thaliana}; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrotase (68414.m06138) 1159 Not regulated NC-NC-NC 262258_at At1g53850 20S proteasome alpha subunit E1 (PAE1) identical to 20S proteasome subunit PAE1 GI: 3421087 from [Arabidopsis thaliana] (68414.m06129) 1160 Not regulated NC-NC-NC 262225_at At1g53840 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase (68414.m06128) 1161 Not regulated NC-NC-NC 262203_at At2g01060 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain (68415.m00011) 1162 Not regulated NC-NC-NC 262204_at At2g01100 expressed protein (68415.m00016) 1163 Not regulated NC-NC-NC 262168_at At1g74730 expressed protein (68414.m08659) 1164 Not regulated NC-NC-NC 262172_at At1g74970 ribosomal protein S9 (RPS9) identical to ribosomal protein S9 [Arabidopsis thaliana] GI: 5456946 (68414.m08703) 1165 Not regulated NC-NC-NC 262173_at At1g74920 betaine-aldehyde dehydrogenase, putative identical to betaine-aldehyde dehydrogenase, chloroplast precursor (BADH) [Arabidopsis thaliana] SWISS-PROT: Q9S795; strong similarity to betaine aldehyde dehydrogenase [Amaranthus hypochondriacus] GI: 2388710 (68414.m08691) 1166 Not regulated NC-NC-NC 262174_at At1g74910 ADP-glucose pyrophosphorylase family protein contains Pfam profile PF00483: Nucleotidyl transferase; low similarity to mannose-1- phosphate guanylyltransferase [Hypocrea jecorina] GI: 3323397 (68414.m08685) 1167 Not regulated NC-NC-NC 262175_at At1g74880 expressed protein (68414.m08679) 1168 Not regulated NC-NC-NC 262176_at At1g74960 3-ketoacyl-ACP synthase, putative similar to 3-ketoacyl-ACP synthase [Cuphea pulchemma] gi|3800747|gb|AAC68860; identical to cDNA beta-ketoacyl-ACP synthetase 2 nuclear gene for plastid product GI: 14582700 (68414.m08699) 1169 Not regulated NC-NC-NC 262180_at At1g78050 phosphoglycerate/bisphosphoglycerate mutase family protein similar to SP|P31217 Phosphoglycerate mutase 1 (EC 5.4.2.1) {Escherichia coli O157: H7}; contains Pfam profile PF00300: phosphoglycerate mutase family (68414.m09095) 1170 Not regulated NC-NC-NC 262181_at At1g78060 glycosyl hydrolase family 3 protein similar to xylosidase GI: 2102655 from [Aspergillus niger] (68414.m09096) 1171 Not regulated NC-NC-NC 262195_at At1g78040 pollen Ole a 1 allergen and extensin family protein contains Pfam domain, PF01190: Pollen proteins Ole a I family (68414.m09094) 1172 Not regulated NC-NC-NC 262137_at At1g77920 bZIP family transcription factor contains Pfam profile: PF00170 bZIP transcription factor (68414.m09080) 1173 Not regulated NC-NC-NC 262145_at At1g52730 transducin family protein/WD-40 repeat family protein contains 7 WD-40 repeats (PF00400); similar to UNR-interacting protein (WD-40 repeat protein PT-WD) (SP: Q9Y3F4) [Homo sapiens] (68414.m05958) 1174 Not regulated NC-NC-NC 262157_at At1g52670 biotin/lipoyl attachment domain-containing protein similar to SP|Q06881 Biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP) {Anabaena sp.}; contains Pfam profile PF00364: Biotin-requiring enzyme (68414.m05947) 1175 Not regulated NC-NC-NC 262159_at At1g52720 expressed protein (68414.m05956) 1176 Not regulated NC-NC-NC 262160_at At1g52590 expressed protein (68414.m05937) 1177 Not regulated NC-NC-NC 262161_at At1g52600 signal peptidase, putative similar to SP|P13679 Microsomal signal peptidase 21 kDa subunit (EC 3.4.—.—) {Canis familians}; contains Pfam profile PF00461: Signal peptidase I (68414.m05938) 1178 Not regulated NC-NC-NC 262107_at At1g02750 drought-responsive family protein contains similarity to drought-induced mRNA, Di19 [Arabidopsis thaliana] gi|469110|emb|CAA55321 (68414.m00229) 1179 Not regulated NC-NC-NC 262109_at At1g02730 cellulose synthase family protein similar to cellulose synthase catalytic subunit [gi: 13925881] from Nicotiana alata, cellulose synthase-4 [gi: 9622880] from Zea mays (68414.m00226) 1180 Not regulated NC-NC-NC 262110_at At1g02840 pre-mRNA splicing factor SF2 (SF2)/SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) (Arabidopsis thaliana) (68414.m00244) 1181 Not regulated NC-NC-NC 262112_at At1g02870 expressed protein (68414.m00252) 1182 Not regulated NC-NC-NC 262113_at At1g02820 late embryogenesis abundant 3 family protein/LEA3 family protein similar to late embryogenis abundant protein 5 GI: 2981167 from [Nicotiana tabacum]; contains Pfam profile PF03242: Late embryogenesis abundant protein (68414.m00242) 1183 Not regulated NC-NC-NC 262114_at At1g02860 SPX (SYG1/Pho81/XPR1) domain-containing protein/zinc finger (C3HC4-type RING finger) protein-related weak similarity to tripartite motif protein TRIM13 [Mus musculus] GI: 12407427, gpStaf50 [Homo sapiens] GI: 899300; contains Pfam profiles PF03105: SPX domain, PF00097: Zinc finger, C3HC4 type (RING finger) (68414.m00251) 1184 Not regulated NC-NC-NC 262118_at At1g02816 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538 (68414.m00241) 1185 Not regulated NC-NC-NC 262117_at At1g02780 60S ribosomal protein L19 (RPL19A) similar to ribosomal protein L19 GI: 36127 from [Homo sapiens] (68414.m00233) 1186 Not regulated NC-NC-NC 262118_at At1g02850 glycosyl hydrolase family 1 protein contains Pfam PF00232: Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6- phospho-beta-galactosidase; similar to hydroxyisourate hydrolase (GI: 19569603) [Glycine max] (68414.m00247) 1187 Not regulated NC-NC-NC 262077_at At1g59610 dynamin-like protein, putative (ADL3) strong similarity to dynamin-like protein 6 (ADL6) [Arabidopsis thaliana] GI: 6651399; contains Pfam profiles PF01031: Dynamin central region, PF00350: Dynamin family, PF02212: Dynamin GTPase effector domain, PF00169: PH domain; identical to cDNA dynamin-like protein ADL3, GI: 4803835 (68414.m06704) 1188 Not regulated NC-NC-NC 262078_at At1g59520 expressed protein (CW7) (68414.m06684) 1189 Not regulated NC-NC-NC 262096_at At1g56010 transcription activator NAC1 (NAC1) contains Pfam PF02365: No apical meristem (NAM) domain; identical to NAC1 GB: AAF21437 GI: 6649236 from [Arabidopsis thaliana] (68414.m06427) 1190 Not regulated NC-NC-NC 262064_at At1g56075 1191 Not regulated NC-NC-NC 262039_at At1g80050 adenine phosphoribosyltransferase 2 (APT2) identical to SP|Q42563 Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT) {Arabidopsis thaliana} (68414.m09371) 1192 Not regulated NC-NC-NC 262044_s_at At1g80210 expressed protein (68414.m09387) 1193 Not regulated NC-NC-NC 262048_at At1g80230 cytochrome c oxidase family protein contains Pfam domain, PF01215: Cytochrome c oxidase subunit Vb (68414.m09389) 1194 Not regulated NC-NC-NC 262053_at At1g79940 DNAJ heat shock N-terminal domain-containing protein/sec63 domain-containing protein similar to SP|Q9UGP8 Translocation protein SEC63 homolog {Homo sapiens}; contains Pfam profiles PF00226 DnaJ domain, PF02889 Sec63 domain (68414.m09342) 1195 Not regulated NC-NC-NC 262055_at At1g79970 expressed protein (68414.m09348) 1196 Not regulated NC-NC-NC 262057_at At1g80040 expressed protein (68414.m09369) 1197 Not regulated NC-NC-NC 262058_at At1g79975 expressed protein (68414.m09352) 1198 Not regulated NC-NC-NC 262059_at At1g80030 DNAJ heat shock protein, putative similar to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix rhusiopathiae}; contains Pfam profiles PF00226: DnaJ domain. PF01556: DnaJ C terminal region, PF00684: DnaJ central domain (4 repeats) (68414.m09366) 1199 Not regulated NC-NC-NC 262038_at At1g35580 beta-fructofuranosidase, putative/invertase, putative/saccharase, putative/beta-fructosidase, putative similar to neutral invertase [Daucus carota] GI: 4200165; contains Pfam profile PF04853: Plant neutral invertase (68414.m04417) 1200 Not regulated NC-NC-NC 262026_at At1g35670 calcium-dependent protein kinase 2 (CDPK2) identical to calcium-dependent protein kinase [Arabidopsis thaliana] gi|604881|dbj|BAA04830; contains protein kinase domain, Pfam: PF00069; contains EF hand domain (calcium-binding EF-hand). Pfam: PF00036, INTERPRO: IPR002048 (68414.m04435) 1201 Not regulated NC-NC-NC 262029_at At1g35880 50S ribosomal protein L21, chloroplast/CL21 (RPL21) identical to 50S ribosomal protein L21, chloroplast precursor (CL21) {Arabidopsis thaliana} SWISS-PROT: P51412 (68414.m04436) 1202 Not regulated NC-NC-NC 261981_at At1g33811 GDSL-motif lipase/hydrolase family protein similar to family II lipases EXL3 GI: 15054386, EXL1 GI: 15054382, EXL2 GI: 15054384 from [Arabidopsis thaliana]; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase (68414.m04180) 1203 Not regulated NC-NC-NC 261962_at At1g33780 expressed protein similar to At3g29240 [Arabidopsis thaliana]; contains Pfam profile PF02622: Uncharacterized ACR, COG1678 (68414.m04175) 1204 Not regulated NC-NC-NC 261999_at At1g33800 expressed protein contains Pfam profile PF04669: Protein of unknown function (DUF579) (68414.m04178) 1205 Not regulated NC-NC-NC 262005_at At1g64550 ABC transporter family protein similar to ABC transporter protein GB: AAF31030 GI: 6699653 from [Leishmania major] (68414.m07317) 1206 Not regulated NC-NC-NC 261972_at At1g64600 expressed protein similar to Hypothetical 72.2 kDa protein in RPS27A-GPM1 intergenic region (Swiss-Prot: P36056) [Saccharomyces cerevisiae] (68414.m07322) 1207 Not regulated NC-NC-NC 261945_at At1g64530 RWP-RK domain-containing protein similar to nodule inception protein [Lotus japonicus] GI: 6448579; contains Pfam profile: PF02042 RWP-RK domain (68414.m07315) 1208 Not regulated NC-NC-NC 261948_at At1g64680 expressed protein (68414.m07332) 1209 Not regulated NC-NC-NC 261949_at At1g64670 hydrolase, alpha/beta fold family protein low similarity to 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase [Pseudomonas putida] GI: 2822275; contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68414.m07331) 1210 Not regulated NC-NC-NC 261954_at At1g64510 ribosomal protein S6 family protein similar to plastid ribosomal protein S6 precursor GB: AAF64311 GI: 7582401 from [Spinacia oleracea] (68414.m07313) 1211 Not regulated NC-NC-NC 261955_at At1g64520 26S proteasome regulatory subunit, putative (RPN12) similar to 26S proteasome regulatory complex subunit p30 GB: AAF08395 GI: 6434966 from [Drosophila melanogaster] (68414.m07314) 1212 Not regulated NC-NC-NC 261958_at At1g64590 short-chain dehydrogenase/reductase (SDR) family protein contains INTERPRO family IPR002198 short-chain dehydrogenase/reductase (SDR) superfamily (68414.m07321) 1213 Not regulated NC-NC-NC 261958_at At1g64500 glutaredoxin family protein (68414.m07312) 1214 Not regulated NC-NC-NC 261919_at At1g65980 peroxiredoxin type 2, putative strong similarity to type 2 peroxiredoxin [Brassica rapa subsp. pekinensis] GI: 4928472; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family (68414.m07486) 1215 Not regulated NC-NC-NC 261920_at At1g65930 isocitrate dehydrogenase, putative/NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase SP|Q40345 from [Medicago sativa] (68414.m07481) 1216 Not regulated NC-NC-NC 261924_at At1g22550 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family (68414.m02816) 1217 Not regulated NC-NC-NC 261925_at At1g22540 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family (68414.m02815) 1218 Not regulated NC-NC-NC 261930_at At1g22440 alcohol dehydrogenase, putative similar to alcohol dehydrogenase ADH GI: 7705214 from [Lycopersicon esculentum]; contains Pfam zinc-binding dehydrogenase domain PF00107 (68414.m02805) 1219 Not regulated NC-NC-NC 261939_at At1g22450 cytochrome c oxidase subunit 6b, putative (COX6b) nearly identical to subunit 6b of cytochrome c oxidase [Arabidopsis thaliana] GI: 6518353 (68414.m02806) 1220 Not regulated NC-NC-NC 261940_at At1g22520 expressed protein contains Pfam PF04418: Domain of unknown function (DUF543) (68414.m02813) 1221 Not regulated NC-NC-NC 261882_at At1g80770 expressed protein (68414.m09476) 1222 Not regulated NC-NC-NC 261885_at At1g80930 MIF4G domain-containing protein/MA3 domain-containing protein similar to SP|Q9P6R9 Cell cycle control protein cwf22 {Schizosaccharomyces pombe}; contains Pfam profiles PF02854: MIF4G domain, PF02847: MA3 domain (68414.m09495) 1223 Not regulated NC-NC-NC 261886_s_at At1g80700 expressed protein (68414.m09469) 1224 Not regulated NC-NC-NC 261887_at At1g80780 CCR4-NOT transcription complex protein, putative similar to SWISS-PROT: Q60809 CCR4-NOT transcription complex, subunit 7 (CCR4-associated factor 1, (CAF1) [Mus musculus] (68414.m09477) 1225 Not regulated NC-NC-NC 261891_at At1g80790 XH/XS domain-containing protein/XS zinc finger domain-containing protein contains Pfam domains PF03469: XH domain, PF03468: XS domain and PF03470: XS zinc finger domain (68414.m09479) 1226 Not regulated NC-NC-NC 261895_at At1g80830 NRAMP metal ion transporter 1 (NRAMP1) identical to NRAMP1 protein [Arabidopsis thaliana] gi|7108911|gb|AAF36535; member of the natural resistance-associated macrophage protein (NRAMP) metal transporter family, PMID: 11500563 (68414.m09483) 1227 Not regulated NC-NC-NC 261896_at At1g80670 transducin family protein/WD-40 repeat family protein contains 5 WD-40 repeats (PF00400) (1 weak); similar to Hypothetical RAE1-like protein. (SP: Q38942) [Arabidopsis thaliana]; similar to mRNA-associated protein mmp 41 ((mRNA export protein) (GB: AAC28126) (GI: 1903456)(RAE1) (MRNP41) (SP: P78406) [Homo sapiens] (68414.m09486) 1228 Not regulated NC-NC-NC 261897_at At1g80950 phospholipid/glycerol acyltransferase family protein low similarity to SP|Q59601 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) {Neisseria gonorrhoeae}; contains Pfam profile PF01553: Acyltransferase (68414.m09498) 1229 Not regulated NC-NC-NC 261900_at At1g80940 expressed protein (68414.m09496) 1230 Not regulated NC-NC-NC 261902_at At1g80860 expressed protein (68414.m09486) 1231 Not regulated NC-NC-NC 261904_at At1g65040 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68414.m07372) 1232 Not regulated NC-NC-NC 261852_at At1g50440 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68414.m05653) 1233 Not regulated NC-NC-NC 261854_at At1g50670 OTU-like cysteine protease family protein contains Pfam profile PF02338: OTU-like cysteine protease (68414.m05698) 1234 Not regulated NC-NC-NC 261855_at At1g50510 indigoidine synthase A family protein similar to lndA protein (GI: 7576263) [Erwinia chrysanthemi]; contains Pfam profile PF04227: Indigoidine synthase A like protein (68414.m05665) 1235 Not regulated NC-NC-NC 261858_at At1g50570 C2 domain-containing protein low similarity to cold-regulated gene SRC2 [Glycine max] GI: 2055230; contains Pfam profile PF00168: C2 domain (68414.m05675) 1236 Not regulated NC-NC-NC 261860_at At1g50600 scarecrow-like transcription factor 5 (SCL5) similar to SCARECROW GB: AAB06318 GI: 1497987 from [Arabidopsis thaliana] (68414.m05683) 1237 Not regulated NC-NC-NC 261861_at At1g50450 expressed protein (68414.m05655) 1238 Not regulated NC-NC-NC 261864_s_at At1g50480 formate-tetrahydrofolate ligase/10-formyltetrahydrofolate synthetase (THFS) identical to 10-formyltetrahydrofolate synthetase (Arabidopsis thaliana) GI: 5921663 (68414.m05660) 1239 Not regulated NC-NC-NC 261865_at At1g50430 7-dehydrocholesterol reductase/7-DHC reductase/sterol delta-7-reductase (ST7R)/dwarf5 protein (DWF5) identical to SP|Q9LDU6 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC reductase) (Sterol delta-7-reductase) (Dwarf5 protein) {Arabidopsis thaliana} (68414.m05652) 1240 Not regulated NC-NC-NC 261866_at At1g50420 scarecrow-like transcription factor 3 (SCL3) identical to GB: AAD24404 GI: 4580515 from [Arabidopsis thaliana] (Plant J. 18 (1), 111-119 (1999)) (68414.m05651) 1241 Not regulated NC-NC-NC 261867_at At1g50575 lysine decarboxylase family protein contains Pfam profile PF03641: lysine decarboxylase family (68414.m05677) 1242 Not regulated NC-NC-NC 261871_at At1g11440 expressed protein (68414.m01314) 1243 Not regulated NC-NC-NC 261821_at At1g11530 thioredoxin family protein similar to thioredoxin H-type from Arabidopsis thaliana SP|P29448, Nicotiana tabacum SP|Q07090; contains Pfam profile: PF00085 Thioredoxin (68414.m01324) 1244 Not regulated NC-NC-NC 261822_at At1g11380 expressed protein contains Pfam profile PF04749: Protein of unknown function, DUF614 (68414.m01307) 1245 Not regulated NC-NC-NC 261823_at At1g11400 expressed protein (68414.m01309) 1246 Not regulated NC-NC-NC 261824_at At1g11430 plastid developmental protein DAG, putative similar to DAG protein, chloroplast precursor [Garden snapdragon] SWISS- PROT: Q38732 (68414.m01313) 1247 Not regulated NC-NC-NC 261827_at At1g11480 eukaryotic translation initiation factor-related contains weak similarity to Swiss-Prot: P23588 eukaryotic translation initiation factor 4B (eIF-4B) [Homo sapiens] (68414.m01319) 1248 Not regulated NC-NC-NC 261828_at At1g11360 universal stress protein (USP) family protein contains Pfam PF00582: universal stress protein family domain; similar to ethylene- responsive ER6 protein (GI: 5669654) [Lycopersicon esculentum] (68414.m01304) 1249 Not regulated NC-NC-NC 261831_at At1g10630 ADP-ribosylation factor, putative similar to ADP-ribosylation factor GI: 166586 from [Arabidopsis thaliana] (68414.m01205) 1250 Not regulated NC-NC-NC 261832_at At1g10650 expressed protein (68414.m01207) 1251 Not regulated NC-NC-NC 261838_at At1g16030 heat shock protein 70, putative/HSP70, putative similar to heat shock protein hsp70 GI: 1771478 from [Pisum sativum] (68414.m01924) 1252 Not regulated NC-NC-NC 261843_at At1g16180 TMS membrane family protein/tumour differentially expressed (TDE) family protein contains Pfam domain, PF03348: TMS membrane protein/tumour differentially expressed protein (TDE) (68414.m01938) 1253 Not regulated NC-NC-NC 261787_at At1g16020 expressed protein (68414.m01921) 1254 Not regulated NC-NC-NC 261788_at At1g15980 expressed protein (68414.m01917) 1255 Not regulated NC-NC-NC 261790_at At1g16000 expressed protein (68414.m01919) 1256 Not regulated NC-NC-NC 261791_at At1g16170 expressed protein (68414.m01937) 1257 Not regulated NC-NC-NC 261793_at At1g16080 expressed protein (68414.m01929) 1258 Not regulated NC-NC-NC 261794_at At1g16060 ovule development protein, putative similar to ovule development protein AINTEGUMENTA (GI: 1209099)[Arabidopsis thaliana] (68414.m01926) 1259 Not regulated NC-NC-NC 261795_at At1g16010 magnesium transporter CorA-like family protein (MRS2-1) low similarity to SP|Q01926 RNA splicing protein MRS2, mitochondrial precursor {Saccharomyces cerevisiae}; contains Pfam profile PF01544: CorA-like Mg2+ transporter protein (68414.m01920) 1260 Not regulated NC-NC-NC 261801_at At1g30520 acyl-activating enzyme 14 (AAE14) identical to acyl-activating enzyme 14 [Arabidopsis thaliana]; similar to SP|Q42524 4-coumarate- CoA ligase 1 (EC 6.2.1.12) (4-coumaroyl-CoA synthase 1) {Arabidopsis thaliana}; contains Pfam profile PF00501: AMP-binding enzyme; identical to cDNA acyl-activating enzyme 14 (At1g30520) GI: 29893263 (68414.m03734) 1261 Not regulated NC-NC-NC 261806_at At1g30510 ferredoxin--NADP(+) reductase, putative/adrenodoxin reductase, putative strong similarity to SP|P41345 Ferredoxin--NADP reductase, root isozyme, chloroplast precursor (EC 1.18.1.2) (FNR) {Oryza sativa}, ferredoxin-NADP reductase precursor [Zea mays] GI: 500751 (68414.m03730) 1262 Not regulated NC-NC-NC 261808_at At1g30480 DNA-damage-repair/toleration protein, chloroplast (DRT111) nearly identical to SP|P42698 DNA-damage-repair/toleration protein DRT111, chloroplast precursor {Arabidopsis thaliana}; contains Pfam profiles PF01585: G-patch domain, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (68414.m03726) 1263 Not regulated NC-NC-NC 261810_at At1g08130 DNA ligase/polydeoxyribonucleotide synthase [ATP] identical to SP|Q42572 DNA ligase (EC 6.5.1.1) {Polydeoxyribonucleotide synthase [ATP]} {Arabidopsis thaliana}; contains Pfam profiles: PF01068 ATP dependent DNA ligase domain, PF04679 ATP dependent DNA ligase C terminal region, PF04675 DNA ligase N terminus (68414.m00892) 1264 Not regulated NC-NC-NC 261815_at At1g08325 1265 Not regulated NC-NC-NC 261756_at At1g08320 bZIP family transcription factor contains Pfam profile: PF00170 bZIP transcription factor (68414.m00920) 1266 Not regulated NC-NC-NC 261757_at At1g08210 aspartyl protease family protein contains Pfam profile PF00026: Eukaryotic aspartyl protease; similar to CND41, chloroplast nucleoid DNA binding protein (GI: 2541876) {Nicotiana tabacum} (68414.m00907) 1267 Not regulated NC-NC-NC 261758_at At1g08250 prephenate dehydratase family protein contains similarity to prephenate dehydratase GI: 1008717 from [Amycolatopsis methanolica] (68414.m00910) 1268 Not regulated NC-NC-NC 261769_at At1g76100 plastocyanin identical to plastocyanin GI: 1865683 from [Arabidopsis thaliana] (68414.m08837) 1269 Not regulated NC-NC-NC 261770_at At1g76140 prolyl oligopeptidase, putative/prolyl endopeptidase, putative/post-proline cleaving enzyme, putative similar to SP|Q9QUR6 Prolyl endopeptidase (EC 3.4.21.26) (Post-proline cleaving enzyme) {Mus musculus}; contains Pfam profiles PF00326: prolyl oligopeptidase family, PF02897: Prolyl oligopeptidase, N-terminal beta-propeller domain (68414.m08842) 1270 Not regulated NC-NC-NC 261771_at At1g76150 maoC-like dehydratase domain-containing protein contains similarity to Swiss-Prot: P51659 estradiol 17 beta-dehydrogenase 4 (17- beta-HSD 4) (17-beta-hydroxysteroid dehydrogenase 4) [Homo sapiens]; contains Pfam profile PF01575: MaoC like domain (68414.m08843) 1271 Not regulated NC-NC-NC 261748_at At1g76070 expressed protein (68414.m08834) 1272 Not regulated NC-NC-NC 261751_at At1g76080 thioredoxin family protein low similarity to thioredoxin (TRX) [Fasciola hepatica] GI: 6687568; contains Pfam profile PF00085: Thioredoxin (68414.m08835) 1273 Not regulated NC-NC-NC 261754_at At1g76130 alpha-amylase, putative/1,4-alpha-D-glucan glucanohydrolase, putative strong similarity to alpha-amylase GI: 7532799 from [Malus x domestica]; contains Pfam profile PF00128: Alpha amylase, catalytic domain (68414.m08841) 1274 Not regulated NC-NC-NC 261723_at At1g76200 expressed protein (68414.m08849) 1275 Not regulated NC-NC-NC 261725_at At1g76300 small nuclear ribonucleoprotein D3, putative/snRNP core protein D3, putative/Sm protein D3, putative similar to SWISS- PROT: P43331 small nuclear ribonucleoprotein Sm D3 (snRNP core protein D3, Sm-D3) [Mouse] (68414.m08862) 1276 Not regulated NC-NC-NC 261733_at At1g47830 clathrin coat assembly protein, putative similar to clathrin coat assembly protein AP17 GB: CAA65533 GI: 2959358 from [Zea mays]; contains Pfam profile: PF01217 clathrin adaptor complex small chain (68414.m05324) 1277 Not regulated NC-NC-NC 261739_at At1g47750 peroxisomal biogenesis factor 11 family protein/PEX11 family protein contains Pfam PF05648: Peroxisomal biogenesis factor 11 (PEX11) (68414.m05310) 1278 Not regulated NC-NC-NC 261740_at At1g47740 expressed protein (68414.m05308) 1279 Not regulated NC-NC-NC 261744_at At1g08490 cysteine desulfurase, putative similar to nitrogen fixation protein (nifS) GB: D64004 GI: 1001701 from [Synechocystis sp]; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V (68414.m00940) 1280 Not regulated NC-NC-NC 261746_at At1g08380 expressed protein (68414.m00927) 1281 Not regulated NC-NC-NC 261720_at At1g08460 histone deacetylase family protein (HDA8) identical to HDA8 [Arabidopsis thaliana] GI: 21360988low similarity to SP|Q9Z2V5 Histone deacetylase 6 (ND6) (Histone deacetylase mHDA2) {Mus musculus}; contains Pfam profile PF00850: Histone deacetylase family; supporting cDNA gi|21360987|gb|AF510167.1| (68414.m00936) 1282 Not regulated NC-NC-NC 261721_at At1g08480 expressed protein (68414.m00939) 1283 Not regulated NC-NC-NC 261692_at At1g08450 catreticulin 3 (CRT3) identical to similar to SP|O04153 Calreticulin 3 precursor {Arabidopsis thaliana} (68414.m00934) 1284 Not regulated NC-NC-NC 261693_at At1g08370 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO: IPR002965; contains some similarity to transcription factor [Danio rerio] gi|15617376|emb|CAC69871 (68414.m00926) 1285 Not regulated NC-NC-NC 261694_at At1g08360 60S ribosomal protein L10A (RPL10aA) similar to 60S ribosomal protein L10A GB: AAC73045 GI: 3860277 from [Arabidopsis thaliana] (68414.m00925) 1286 Not regulated NC-NC-NC 261895_at At1g08520 magnesium-chelatase subunit chID, chloroplast, putative/Mg-protoporphyrin IX chelatase, putative (CHLD) similar to Mg-chelatase SP|O24133 from Nicotiana tabacum, GB: AF014399 GI: 2318116 from [Pisum sativum] (68414.m00943) 1287 Not regulated NC-NC-NC 261696_at At1g08470 strictosidine synthase family protein similar to strictosidine synthase [Rauvolfia serpentina][SP|P15324] (68414.m00938) 1288 Not regulated NC-NC-NC 261709_at At1g32790 RNA-binding protein, putative similar to RNA-binding protein GB: CAB40027 GI: 4539439 from [Arabidopsis thaliana] (68414.m04042) 1289 Not regulated NC-NC-NC 261711_at At1g32700 zinc-binding family protein similar to zinc-binding protein [Pisum sativum] GI: 16117799; contains Pfam profile PF04640: Protein of unknown function, DUF597 (68414.m04032) 1290 Not regulated NC-NC-NC 261718_at At1g18390 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68414.m02297) 1291 Not regulated NC-NC-NC 261661_at At1g18360 hydrolase, alpha/beta fold family protein similar to monoglyceride lipase from [Homo sapiens] GI: 14594904, [Mus musculus] GI: 2632162, [Rattus norvegicus] GI: 19697886; contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68414.m02294) 1292 Not regulated NC-NC-NC 261666_at At1g18440 peptidyl-tRNA hydrolase family protein contains Pfam profile PF01195: peptidyl-tRNA hydrolase (68414.m02301) 1293 Not regulated NC-NC-NC 261687_at At1g18460 lipase family protein similar to triacylglycerol lipase, gastric precursor (EC 3.1.1.3) {Canis familiaris} [SP|P80035] (68414.m02303) 1294 Not regulated NC-NC-NC 261672_at At1g18450 actin-related protein 4 (ARP4) neary identical to actin-related protein 4 (ARP4) [Arabidopsis thaliana] GI: 21427463; contains Pfam profile PF00022: Actin; supporting cDNA gi|21427462|gb|AF507912.1| (68414.m02302) 1295 Not regulated NC-NC-NC 261674_at At1g18270 ketose-bisphosphate aldolase class-II family protein low similarity to KbaY (tagatose-1,6-bisphosphate aldolase) [Escherichia coli] GI: 8895753; contains Pfam profile PF01116: Fructose-bisphosphate aldolase class-II (68414.m02280) 1296 Not regulated NC-NC-NC 261677_at At1g18470 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (68414.m02304) 1297 Not regulated NC-NC-NC 261682_at At1g47330 expressed protein contains Pfam profile PF01595: Domain of unknown function (68414.m05240) 1298 Not regulated NC-NC-NC 261659_at At1g50030 target of rapamycin protein (TOR) identical to pTOR [Arabidopsis thaliana] GI: 12002902; contains Pfam profiles PF00454 Phosphatidylinositol 3- and 4-kinase, PF02259 FAT domain, PF02260 FATC domain (68414.m05614) 1299 Not regulated NC-NC-NC 261634_at At1g49970 ATP-dependent Clp protease proteolytic subunit (ClpR1) (nClpP5) identical to nClpP5 GB: BAA82069 GI: 5380595 from [Arabidopsis thaliana]; identical to cDNA nClpP5 (nuclear encoded ClpP5) GI: 5360594 (68414.m05607) 1300 Not regulated NC-NC-NC 261635_at At1g50020 expressed protein (68414.m05613) 1301 Not regulated NC-NC-NC 261637_at At1g49950 DNA-binding protein, putative contains similarity to DNA-binding protein PcMYB1 [Petroselinum crispum] gi|2224899|gb|AAB81699 (68414.m05602) 1302 Not regulated NC-NC-NC 261638_at At1g49975 expressed protein (68414.m05608) 1303 Not regulated NC-NC-NC 261642_at At1g27680 glucose-1-phosphate adenylyltransferase large subunit 2 (APL2)/ADP-glucose pyrophosphorylase identical to SP|P55230 (68414.m03383) 1304 Not regulated NC-NC-NC 261644_s_at At1g27830 1305 Not regulated NC-NC-NC 261655_at At1g01940 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein contains Pfam domain, PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type (68414.m00112) 1306 Not regulated NC-NC-NC 261622_at At1g01970 pentatricopeptide (PPR) repeat-containing protein low similarity to 67 kD chloroplastic RNA-binding protein RSP67.2 [Raphanus sativus] GI: 9755888; contains Pfam profile PF01535: PPR repeat (68414.m00115) 1307 Not regulated NC-NC-NC 261626_at At1g01990 expressed protein (68414.m00117) 1308 Not regulated NC-NC-NC 261627_at At1g01910 anion-transporting ATPase, putative similar to SP|O43681 Arsenical pump-driving ATPase (EC 3.6.3.16) (Arsenite-translocating ATPase) (Arsenical resistance ATPase) (Arsenite-transporting ATPase) (ARSA) (ASNA-I) {Homo sapiens}; contains Pfam profile PF02374; Anion-transporting ATPase (68414.m00108) 1309 Not regulated NC-NC-NC 261606_at At1g49570 peroxidase, putative identical to peroxidase ATP5a [Arabidopsis thaliana] gi|1546702|emb|CAA67341; similar to peroxidase SWISS PROT: P80679 from [Armoracia rusticana] (68414.m05558) 1310 Not regulated NC-NC-NC 261607_at At1g49860 expressed protein (68414.m05569) 1311 Not regulated NC-NC-NC 261612_at At1g49710 fucosyltransferase-like protein, putative/FucT2, putative/FucTB, putative (FUT12) identical to Putative fucosyltransferase-like protein (FucTB) (FucT2) (AtFUT12) (Swiss-Prot: Q9FX97) [Arabidopsis thaliana]; similar to glycoprotain 3-alpha-L- fucosyltransferase A (SP: Q9LJK1) [Arabidopsis thaliana]; contains Pfam profile PF00852: Fucosyl transferase (68414.m05573) 1312 Not regulated NC-NC-NC 261620_s_at At1g33140 60S ribosomal protein L9 (RPL90A/C) similar to RIBOSOMAL PROTEIN L9 GB: P49209 from [Arabidopsis thaliana] (68414.m04093) 1313 Not regulated NC-NC-NC 261566_at At1g33230 expressed protein (68414.m04106) 1314 Not regulated NC-NC-NC 261570_at At1g01120 fatty acid elongase 3-ketoacyl-CoA synthase 1 (KCS1) nearly identical to GB: AAC99312 GI: 4091810 from [Arabidopsis thaliana] (68414.m00015) 1315 Not regulated NC-NC-NC 261577_at At1g01080 33 kDa ribonucleoprotein, chloroplast, putative/RNA-binding protein cp33, putative similar to 33 KDA RIBONUCLEOPROTEIN GB: P19684 from [Nicotiana sylvestris] (68414.m00010) 1316 Not regulated NC-NC-NC 261582_at At1g01160 SSXT protein-related/transcription co-activator-related similar to SYT/SSX4 fusion protein (GI: 11127695) [Homo sapiens]; supporting cDNA gi|21539891|gb|AY102640.1|; contains Pfam profile PF05030: SSXT protein (N-terminal region) (68414.m00026) 1317 Not regulated NC-NC-NC 261583_at At1g01090 pyruvate dehydrogenase E1 component alpha subunit, chloroplast identical to pyruvate dehydrogenase E1 alpha subunit GB: AAB86803 GI: 2454182 from [Arabidopsis thaliana]; identical to cDNA pyruvate dehydrogenase E1 alpha subunit mRNA, nuclear gene encoding plastid protein GI: 2454181 (68414.m00011) 1318 Not regulated NC-NC-NC 261591_at At1g01740 protein kinase family protein low similarity to protein kinase [Arabidopsis thaliana] GI: 2852449; contains Pfam profile: PF00069 Protein kinase domain (68414.m00093) 1319 Not regulated NC-NC-NC 261563_at At1g01630 SEC14 cytosolic factor, putative/phosphoglyceride transfer protein, putative contains Pfam PF00650: CRAL/TRIO domain and PF03765: CRAL/TRIO, N-terminus; similar to polyphosphoinositide binding protein Ssh2p GB: AAB94599 GI: 2739046 from [Glycine max] (68414.m00080) 1320 Not regulated NC-NC-NC 261534_at At1g01820 peroxisomal biogenesis factor 11 family protein/PEX11 family protein contains Pfam PF05648: Peroxisomal biogenesis factor 11 (PEX11) (68414.m00101) 1321 Not regulated NC-NC-NC 261535_at At1g01725 expressed protein (68414.m00091) 1322 Not regulated NC-NC-NC 261536_at At1g01790 K+ efflux antiporter, putative (KEA1) identical to GB: AAD01191 GI: 4101473 from [Arabidopsis thaliana]; Monovalent cation:proton antiporter family 2 (CPA2 family) member, PMID: 11500563 (68414.m00098) 1323 Not regulated NC-NC-NC 261537_at At1g01800 short-chain dehydrogenase/reductase (SDR) family protein similar to carbonyl reductase GI: 1049108 from [Mus musculus] (68414.m00099) 1324 Not regulated NC-NC-NC 261540_at At1g63610 expressed protein (68414.m07191) 1325 Not regulated NC-NC-NC 261530_at At1g63460 glutathione peroxidase, putative contains Pfam profile: PF00255 glutathione peroxidases (68414.m07176) 1326 Not regulated NC-NC-NC 261509_at At1g71740 hypothetical protein (68414.m08292) 1327 Not regulated NC-NC-NC 261513_at At1g71840 transducin family protein/WD-40 repeat family protein contains Pfam profile: PF00560 Leucine Rich Repeat (4 copies); Pfam profile: PF00069 Eukaryotic protein kinase domain; Pfam profile: PF00400 WD domain, G-beta repeat (7 copies) (68414.m08302) 1328 Not regulated NC-NC-NC 261515_at At1g71800 cleavage stimulation factor, putative similar to cleavage stimulation factor 64 kilodalton subunit GB: AAD47839 GI: 5713194 from [Drosophila melanogaster], SP|P33240 Cleavage stimulation factor, 64 kDa subunit {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68414.m08298) 1329 Not regulated NC-NC-NC 261517_at At1g71780 expressed protein (68414.m08296) 1330 Not regulated NC-NC-NC 261519_at At1g71810 ABC1 family protein contains Pfam domain, PF03109: ABC1 family (68414.m08299) 1331 Not regulated NC-NC-NC 261522_at At1g71710 inositol polyphosphate 5-phosphatase, putative similar to inositol polyphosphate 5-phosphatase I [Arabidopsis thaliana] GI: 10444261 (68414.m08289) 1332 Not regulated NC-NC-NC 261523_at At1g71860 protein tyrosine phosphatase 1 (PTP1) identical to protein tyrosine phosphatase 1 GI: 3170531 from [Arabidopsis thaliana]; contains Pfam profile: PF00102 protein-tyrosine phosphatase (68414.m08304) 1333 Not regulated NC-NC-NC 261524_at At1g14300 expressed protein contains Pfam PF04063: Domain of unknown function (DUF383) and PF04064: Domain of unknown function (DUF384) (68414.m01695) 1334 Not regulated NC-NC-NC 261526_at At1g14370 protein kinase (APK2a) identical to protein kinase APK2a GI: 2852447 from [Arabidopsis thaliana] (68414.m01703) 1335 Not regulated NC-NC-NC 261481_at At1g14260 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) (68414.m01689) 1336 Not regulated NC-NC-NC 261483_at At1g14270 CAAX amino terminal protease family protein contains Pfam profile PF02517: CAAX amino terminal protease family (68414.m01691) 1337 Not regulated NC-NC-NC 261486_at At1g14510 PHD finger family protein contains Pfam domain, PF00628: PHD-finger (68414.m01720) 1338 Not regulated NC-NC-NC 261487_at At1g14340 RNA recognition motif (RRM)-containing protein (68414.m01699) 1339 Not regulated NC-NC-NC 261489_at At1g14450 expressed protein contains similarity to cytochrome c oxidase subunit I GI: 5678701 from [Loligo pealei] (68414.m01714) 1340 Not regulated NC-NC-NC 261490_at At1g14320 60S ribosomal protein L10 (RPL10A)/Wilm's tumor suppressor protein-related similar to tumor suppressor GI: 575354 from [Oryza sativa] (68414.m01697) 1341 Not regulated NC-NC-NC 261492_at At1g14290 acid phosphatase, putative similar to acid phosphatase [Lupinus albus] GI: 5360721; contains Pfam profile PF01598 sterol desaturase (68414.m01694) 1342 Not regulated NC-NC-NC 261493_at At1g14410 DNA-binding protein-related similar to DNA-binding protein p24 GI: 9651810 from [Solanum tuberosum] (68414.m01709) 1343 Not regulated NC-NC-NC 261495_at At1g28410 expressed protein (68414.m03493) 1344 Not regulated NC-NC-NC 261439_at At1g28395 expressed protein (68414.m03489) 1345 Not regulated NC-NC-NC 261440_at At1g28510 expressed protein (68414.m03505) 1346 Not regulated NC-NC-NC 261408_s_at At1g07820 histone H4 identical to histone H4 from Lycopersicon esculentum GI: 297150, Lolium temulentum SP|P02308, Acropora formosa GI: 455652, Citrus jambhiri GI: 16797797 (68414.m00847) 1347 Not regulated NC-NC-NC 261409_at At1g07640 Dof-type zinc finger domain-containing protein identical to zinc finger protein OBP2 GI: 5059394 from [Arabidopsis thaliana] (68414.m00819) 1348 Not regulated NC-NC-NC 261411_at At1g07790 histone H2B, putative strong similarity to histone H2B Arabidopsis thaliana GI: 2407802, Gossypium hirsutum SP|O22582. Lycopersicon esculentum GI: 3021489, Capsicum annum SP|O49118; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 (68414.m00843) 1349 Not regulated NC-NC-NC 261413_at At1g07630 protein phosphatase 2C family protein/PP2C family protein similar to protein phosphatase-2c (GI: 3608412) [Mesembryanthemum crystallinum]; contains Pfam PF00481: Protein phosphatase 2C domain (68414.m00818) 1350 Not regulated NC-NC-NC 261415_at At1g07750 cupin family protein similar to legumin (11S-globulin) from Ginkgo biloba [GI: 949889], 11S globulin from Avena sativa [GI: 472867] (68414.m00837) 1351 Not regulated NC-NC-NC 261417_at At1g07700 thioredoxin family protein low similarity to thioredoxin [Gallus gallus] GI: 212766; contains Pfam profile: PF00085 Thioredoxin (68414.m00827) 1352 Not regulated NC-NC-NC 261418_at At1g07830 ribosomal protein L29 family protein similar to GB: CAA83057 from [Saccharomyces cerevisiae] (68414.m00849) 1353 Not regulated NC-NC-NC 261420_at At1g07720 beta-ketoacyl-CoA synthase family protein similar to GB: AAC99312 from [Arabidopsis thaliana] (Plant J. (1999) in press) (68414.m00832) 1354 Not regulated NC-NC-NC 261422_at At1g18730 expressed protein (68414.m02336) 1355 Not regulated NC-NC-NC 261424_at At1g18700 DNAJ heat shock N-terminal domain-containing protein low similarity to SP|Q9QYI8 DnaJ homolog subfamily B member 7 Mus musculus; contains Pfam profile PF00226 DnaJ domain (68414.m02333) 1356 Not regulated NC-NC-NC 261425_at At1g18880 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family (68414.m02350) 1357 Not regulated NC-NC-NC 261405_at At1g18740 expressed protein (68414.m02337) 1358 Not regulated NC-NC-NC 261406_at At1g18800 nucleosome assembly protein (NAP) family protein similar to SP|Q01105|SET protein (HLA-DR associated protein II) (PHAPII) (Phosphatase 2A inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile PF00956: Nucleosome assembly protein (NAP) (68414.m02343) 1359 Not regulated NC-NC-NC 261376_at At1g18660 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (68414.m02326) 1360 Not regulated NC-NC-NC 261377_at At1g18850 expressed protein (68414.m02347) 1361 Not regulated NC-NC-NC 261378_at At1g18890 calcium-dependent protein kinase 1 (CDPK1) identical to calcium-dependent protein kinase [Arabidopsis thaliana] gi|604880|dbj|BAA04829; contains protein kinase domain, Pfam: PF00069; contains EF hand domain (calcium-binding EF-hand), Pfam: PF00036, INTERPRO: IPR002048 (68414.m02351) 1362 Not regulated NC-NC-NC 261379_at At1g18720 expressed protein similar to YGL010w-like protein GI: 2982301 from [Picea mariana] (68414.m02335) 1363 Not regulated NC-NC-NC 261386_at At1g05430 expressed protein (68414.m00551) 1364 Not regulated NC-NC-NC 261397_at At1g79820 hexose transporter, putative similar to hexose transporter GI: 8347246 from (Solanum tuberosum); contains Pfam profile PF00083: major facilitator superfamily protein (68414.m09322) 1365 Not regulated NC-NC-NC 261403_at At1g79590 syntaxin 52 (SYP52) identical to Swiss-Prot: Q94KK7 syntaxin 52 (AtSYP52) [Arabidopsis thaliana] (68414.m09280) 1366 Not regulated NC-NC-NC 261344_at At1g79710 integral membrane transporter family protein similar to high affinity folic acid/methotrexate transporter 5 (GI: 21898554) [Leishmania tarentolae]; Interpro IPR001991/PR00173 Sodium:dicarboxylater symporter family (68414.m09296) 1367 Not regulated NC-NC-NC 261346_at At1g79720 aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease (68414.m09298) 1368 Not regulated NC-NC-NC 261348_at At1g79810 Pex2/Pex12 N-terminal domain-containing protein/zinc finger (C3HC4-type RING finger) family protein contains Pfam profiles PF00097: zinc finger C3HC4 type (RING finger), PF04757: Pex2/Pex12 amino terminal region (68414.m09318) 1369 Not regulated NC-NC-NC 261351_at At1g79790 haloacid dehalogenase-like hydrolase family protein contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase (68414.m09312) 1370 Not regulated NC-NC-NC 261352_at At1g79650 DNA repair protein RAD23, putative similar to DNA repair by nucleotide excision (NER) RAD23 protein, isoform II GI: 1914685 from [Daucus carota]; contains Pfam profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N domain (68414.m09287) 1371 Not regulated NC-NC-NC 261354_at At1g79690 MutT/nudix family protein contains Pfam NUDIX domain [PF00293]; very low similarity to Chain A and Chain B of Escherichia coli isopentenyl diphosphate:dimethylallyl diphosphate isomerase [gi: 15826361] [gi: 15826360] (68414.m09294) 1372 Not regulated NC-NC-NC 261362_s_at At1g41880 60S ribosomal protein L35a (RPL35aB) identical to GB: CAB81600 from [Arabidopsis thaliana] (68414.m04836) 1373 Not regulated NC-NC-NC 261373_at At1g53000 cytidylyltransferase family contains Pfam profile: PF02348 cytidylyltransferase (68414.m05999) 1374 Not regulated NC-NC-NC 261314_at At1g52980 GTP-binding family protein contains Pfam domain, PF01926: GTPase of unknown function (68414.m05995) 1375 Not regulated NC-NC-NC 261315_at At1g53170 ethylene-responsive element-binding factor 8/ERF transcription factor 8 (ERF8) identical to ERF transcription factor 8 GI: 10567108 from [Arabidopsis thaliana] (68414.m06025) 1376 Not regulated NC-NC-NC 261320_at At1g53120 RNA-binding S4 domain-containing protein (68414.m06015) 1377 Not regulated NC-NC-NC 261322_at At1g44750 purine permease family protein similar to purine permease [Arabidopsis thaliana] GI: 7620007; contains Pfam profile PF03151: Domain of unknown function, DUF250 (68414.m05126) 1378 Not regulated NC-NC-NC 261323_at At1g44760 universal stress protein (USP) family protein contains Pfam profile PF00582: universal stress protein family (68414.m05128) 1379 Not regulated NC-NC-NC 261324_at At1g44770 expressed protein (68414.m05129) 1380 Not regulated NC-NC-NC 261326_s_at At1g44180 aminoacylase, putative/N-acyl-L-amino-acid amidohydrolase, putative similar to aminoacylase-1 (N-acyl-L-amino-acid amidohydrolase, ACY-1) [Homo sapiens] SWISS-PROT: Q03154 (68414.m05103) 1381 Not regulated NC-NC-NC 261328_at At1g44835 YbaK/prolyl-tRNA synthetase family protein contains Pfam PF04073: YbaK/prolyl-tRNA synthetases associated domain; similar to 25.7 kDa protein (GI: 7271117) [Cicer arietinum] (68414.m05136) 1382 Not regulated NC-NC-NC 261334_at At1g44960 expressed protein (68414.m05153) 1383 Not regulated NC-NC-NC 261338_at At1g44920 expressed protein (68414.m05147) 1384 Not regulated NC-NC-NC 261293_at At1g36980 expressed protein (68414.m04610) 1385 Not regulated NC-NC-NC 261294_at At1g48430 dihydroxyacetone kinase family protein similar to dihydroxyacetone kinases; contains Pfam profiles PF02733: DAK1 domain, PF02734: DAK2 domain (68414.m05414) 1386 Not regulated NC-NC-NC 261295_at At1g48450 expressed protein (68414.m05416) 1387 Not regulated NC-NC-NC 261299_at At1g48550 vacuolar protein sorting-associated protein 26 family protein/VPS26 family protein contains Pfam profile PF03643: Vacuolar protein sorting-associated protein 26 (68414.m05429) 1388 Not regulated NC-NC-NC 261301_at At1g48570 zinc finger (Ran-binding) family protein contains Pfam domain, PF00641: Zn-finger in Ran binding protein and others (68414.m05431) 1389 Not regulated NC-NC-NC 261304_at At1g48440 expressed protein (68414.m05415) 1390 Not regulated NC-NC-NC 261308_at At1g48480 leucine-rich repeat transmembrane protein kinase, putative contains similarity to many predicted protein kinases (68414.m05419) 1391 Not regulated NC-NC-NC 261309_at At1g48600 phosphoethanolamine N-methyltransferase 2, putative (NMT2) vary similar to [PEM2_ARATH Putative phosphoethanolamine N- methyltransferase 2 (EC 2.1.1.103) (SP: Q944H0){Arabidopsis thaliana}; very similar to Halotolerance protein Hal3b (SP: P94063)[Arabidopsis thaliana]; to similar to GB: AAF61950 from [Spinacia oleracea] (68414.m05434) 1392 Not regulated NC-NC-NC 261279_at At1g05850 chitinase-like protein 1 (CTL1) similar to class I chitinase GI: 7798856 from [Halimolobos perplexa var. perplexa]; contains Pfam profile PF00182: Chitinase class I; identical to cDNA chitinase-like protein 1 (CTL1) CTL1-ELP1 allele GI: 17226328 (68414.m00612) 1393 Not regulated NC-NC-NC 261252_at At1g05810 Ras-related protein (ARA-1) (ARA)/small GTP-binding protein, putative nearly identical to SP: P19892 Ras-related protein ARA-1 [Arabidopsis thaliana] (Gene 76: 313-319(1989)) (68414.m00608) 1394 Not regulated NC-NC-NC 261253_at At1g05840 aspartyl protease family protein contains Pfam PF00026: Eukaryotic aspartyl protease (68414.m00611) 1395 Not regulated NC-NC-NC 261254_at At1g05805 basic helix-loop-helix (bHLH) family protein (68414.m00607) 1396 Not regulated NC-NC-NC 261267_at At1g26750 expressed protein (68414.m03257) 1397 Not regulated NC-NC-NC 261270_at At1g26630 eukaryotic translation initiation factor 5A, putative/eIF-5A, putative strong similariy to SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) {Lycopersicon esculentum} (68414.m03243) 1398 Not regulated NC-NC-NC 261220_at At1g19970 ER lumen protein retaining receptor family protein similar to SP|P33946 ER lumen protein retaining receptor 1 (KDEL receptor 1) {Bos taurus}; contains Pfam profile PF00810: ER lumen protein retaining receptor (68414.m02502) 1399 Not regulated NC-NC-NC 261225_at At1g20100 expressed protein (68414.m02515) 1400 Not regulated NC-NC-NC 261227_at At1g20200 26S proteasome regulatory subunit S3, putative (RPN3) similar to SP: Q06384 from [Daucus carota] (68414.m02524) 1401 Not regulated NC-NC-NC 261238_at At1g32810 expressed protein (68414.m04044) 1402 Not regulated NC-NC-NC 261190_at At1g32990 ribosomal protein L11 family protein similar to chloroplast ribosomal protein L11 GI: 21312 from [Spinacia oleracea] (68414.m04063) 1403 Not regulated NC-NC-NC 261196_at At1g12860 basic helix-loop-helix (bHLH) family protein/F-box family protein contains Pfam profiles: PF00646 F-box domain, PF00010 helix- loop-helix DNA-binding domain (68414.m01494) 1404 Not regulated NC-NC-NC 261197_at At1g12900 glyceraldehyde 3-phosphate dehydrogenase, chloroplast, putative/NADP-dependent glyceraldehydephosphate dehydrogenase, putative similar to SP|P25856 Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precursor (EC 1.2.1.13) (NADP- dependent glyceraldehydephosphate dehydrogenase subunit A) {Arabidopsis thaliana}; contains Pfam profiles PF02800: Glyceraldehyde 3-phosphate dehydrogenase C-terminal domain. PF00044: Glyceraldehyde 3-phosphate dehydrogenase NAD binding domain (68414.m01498) 1405 Not regulated NC-NC-NC 261202_at At1g12910 flower pigmentation protein (AN11) contains 3 WD-40 repeats (PF00400); identical to GB: AAC18912 from [Arabidopsis thaliana] (Genes Dev. 11 (11), 1422-1434 (1997)) (68414.m01499) 1406 Not regulated NC-NC-NC 261203_at At1g12845 expressed protein (68414.m01492) 1407 Not regulated NC-NC-NC 261204_s_at At3g26618 eukaryotic release factor 1 family protein/eRF1 family protein contains Pfam profiles: PF03463 eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1 domain 3 (68416.m03325) 1408 Not regulated NC-NC-NC 261206_at At1g12800 S1 RNA-binding domain-containing protein contains Pfam domain, PF00575: S1 RNA binding domain (68414.m01486) 1409 Not regulated NC-NC-NC 261207_at At1g12830 expressed protein (68414.m01490) 1410 Not regulated NC-NC-NC 261209_at At1g12810 proline-rich family protein contains proline rich extensin domains, INTERPRO: IPR002965 (68414.m01488) 1411 Not regulated NC-NC-NC 261210_at At1g12840 vacuolar ATP synthase subunit C (VATC)/V-ATPase C subunit/vacuolar proton pump C subunit (DET3) identical to vacuolar ATP synthase subunit C SP: Q9SDS7 from [Arabidopsis thaliana] (68414.m01491) 1412 Not regulated NC-NC-NC 261183_at At1g34550 expressed protein contains Pfam profile PF04765: Protein of unknown function (DUF616); expression supported by MPSS (68414.m04294) 1413 Not regulated NC-NC-NC 261165_at At1g34430 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide S-acetyltransferase (LTA2) [Arabidopsis thaliana] GI: 5881963; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin- requiring enzyme, PF02817: e3 binding domain (68414.m04277) 1414 Not regulated NC-NC-NC 261173_at At1g04830 RabGAP/TBC domain-containing protein low similarity to SP|Q08484 GTPase-activating protein GYP1 {Saccharomyces cerevisiae}; contains Pfam profile PF00566: TBC domain (68414.m00479) 1415 Not regulated NC-NC-NC 261176_at At1g04780 ankyrin repeat family protein contains Pfam PF00023: Ankyrin repeat (68414.m00474) 1416 Not regulated NC-NC-NC 261177_at At1g04770 male stenlity MS5 family protein similar to male sterility MS5 [Arabidopsis thaliana] GI: 3859112; contains Pfam profile PF00515 TPR Domain (68414.m00473) 1417 Not regulated NC-NC-NC 261153_at At1g04850 ubiquitin-associated (UBA)/TS-N domain-containing protein weak similarity to SP|P45974 Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15) {Homo sapiens}; contains Pfam profile PF00627 UBA/TS-N domain (68414.m00481) 1418 Not regulated NC-NC-NC 261154_at At1g04970 lipid-binding serum glycoprotein family protein low similarity to SP|P17213 Bactericidal permeability-increasing protein precursor (BPI) {Homo sapiens}; contains Pfam profile PF02886: LBP/BPI/CETP family, C-terminal domain (68414.m00495) 1419 Not regulated NC-NC-NC 261155_at At1g04960 expressed protein (68414.m00494) 1420 Not regulated NC-NC-NC 261126_at At1g04950 TATA box-binding protein-associated factor (TAF) family protein contains Pfam profile: PF02969 TATA box binding protein associated factor (68414.m00492) 1421 Not regulated NC-NC-NC 261128_at At1g04860 ubiquitin-specific protease 2 (UBP2) identical to GI: 11993463 (68414.m00482) 1422 Not regulated NC-NC-NC 261130_at At1g04870 protein arginine N-methyltransferase family protein similar to SP|Q96LAB Protein arginine N-methyltransferase 6 (EC 2.1.1.—) {Homo sapiens} (68414.m00483) 1423 Not regulated NC-NC-NC 261132_at At1g19800 expressed protein contains Pfam PF02405: Domain of unknown function DUF140; similar to TOLUENE TOLERANCE PROTEIN TTG2B {Brucella melitensis 16M} (GI: 17982923) (68414.m02477) 1424 Not regulated NC-NC-NC 261136_at At1g19600 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase (68414.m02441) 1425 Not regulated NC-NC-NC 261149_s_at At1g19570 dehydroascorbate reductase, putative similar to GB: BAA90672 from (Oryza sativa) (68414.m02437) 1426 Not regulated NC-NC-NC 261105_at At1g63000 expressed protein (68414.m07114) 1427 Not regulated NC-NC-NC 261107_at At1g63010 SPX (SYG1/Pho81/XPR1) domain-containing protein contains Pfam profile PF03105: SPX domain (68414.m07115) 1428 Not regulated NC-NC-NC 261110_at At1g75440 ubiquitin-conjugating enzyme 16 (UBC16) E2; identical to gi: 2801444, GB: AAC39325 from [Arabidopsis thaliana] (Plant Mol. Biol. 23 (2), 387-396 (1993)) (68414.m08763) 1429 Not regulated NC-NC-NC 261119_at At1g75350 ribosomal protein L31 family protein similar to SP: O46917 from [Guillardia theta] (68414.m08752) 1430 Not regulated NC-NC-NC 261120_at At1g75410 BEL1-like homeodomain 3 protein (BLH3) identical to BEL1-like homeodomain 3 (GI: 13877515) [Arabidopsis thaliana] (68414.m08760) 1431 Not regulated NC-NC-NC 261122_at At1g75330 ornithine carbamoyltransferase, chloroplast/ornithine transcarbamylase/OTCase (OTC) identical to SP|O50039 Ornithine carbamoyltransferase, chloroplast precursor (EC 2.1.3.3) (OTCase) (Ornithine transcarbamylase) {Arabidopsis thaliana} (68414.m08750) 1432 Not regulated NC-NC-NC 261089_at At1g07570 protein kinase (APK1a) identical to Protein kinase APK1A from [Arabidopsis thaliana] SWISS-PROT: Q06548 (68414.m00610) 1433 Not regulated NC-NC-NC 261064_at At1g07510 FtsH protease, putative similar to AAA-metalloprotease FtsH [Pisum sativum] GI: 15021761; contains Pfam profiles PF01434: Peptidase family M41, PF00004: ATPase AAA family (68414.m00804) 1434 Not regulated NC-NC-NC 261070_at At1g07390 leucine-rich repeat family protein contains leucine rid-repeat (LRR) domains Pfam: PF00560, INTERPRO: IPR001611; contains similarity to Hcr2-5D [Lycopersicon esculentum] gi|3894393|gb|AAC78596 (68414.m00786) 1435 Not regulated NC-NC-NC 261075_at At1g07280 expressed protein (68414.m00774) 1436 Not regulated NC-NC-NC 261078_at At1g07320 50S ribosomal protein L4, chloroplast (CL4) identical to SP: O50061 from [Arabidopsis thaliana] (68414.m00779) 1437 Not regulated NC-NC-NC 261079_s_at At1g07470 transcription factor IIA large subunit, putative/TFIIA large subunit, putative nearly identical to transcription factor IIA large subunit GI: 2826884 from [Arabidopsis thaliana]; contains Pfam profile: PF03153 transcription factor IIA, alpha/beta subunit (68414.m00797) 1438 Not regulated NC-NC-NC 261083_at At1g07310 C2 domain-containing protein contains similarity to shock protein SRC2 [Glycine max] gi|2055230|dbj|BAA19769; contains Pfam profile PF00168: C2 domain (68414.m00778) 1439 Not regulated NC-NC-NC 261084_at At1g07440 tropinone reductase, putative/tropine dehydrogenase, putative similar to tropinone reductase SP: P50165 from [Datura stramonium] (68414.m00794) 1440 Not regulated NC-NC-NC 261060_at At1g17340 phosphoinositide phosphatase family protein contains similarity to phosphoinositide phosphatase SAC1 [Rattus norvegicus] gi|11095248|gb|AAG29810; contains Pfam domain, PF02383: Sacl homology domain; identical to cDNA SAC domain protein 5 (SAC5) GI: 31415726 (68414.m02113) 1441 Not regulated NC-NC-NC 261031_at At1g17360 COP1-interacting protein-related similar to COP1-Interacting Protein 7 (CIP7) (GI: 3327870) [Arabidopsis thaliana] (68414.m02116) 1442 Not regulated NC-NC-NC 261036_at At1g17470 developmentally regulated GTP-binding protein (DRG1) identical to developmentally regulated GTP binding protein (DRG1) [Arabidopsis thaliana] GI: 2345150 (68414.m02143) 1443 Not regulated NC-NC-NC 261038_at At1g17490 expressed protein (68414.m02147) 1444 Not regulated NC-NC-NC 261040_at At1g17370 oligouridylate-binding protein, putative similar to oligouridylate binding protein [Nicotiana plumbaginifolia] GI: 6996560; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68414.m02118) 1445 Not regulated NC-NC-NC 261048_at At1g01420 UDP-glucoronosyt/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase (68414.m00057) 1446 Not regulated NC-NC-NC 261026_at At1g01240 expressed protein (68414.m00039) 1447 Not regulated NC-NC-NC 261027_at At1g01340 cyclic nucleotide-regulated ion channel (CNGC10) (ACBK1) almost identical to CaM-regulated potassium ion channel (ACBK1) GI: 8515883 from [Arabidopsis thaliana]; contains Pfam domain, PF00520: Ion transport protein (68414.m00049) 1448 Not regulated NC-NC-NC 261017_at At1g26570 UDP-glucose 6-dehydrogenase, putative strong similarity to SP|Q96558 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam profiles PF03721: UDP-glucase/GDP-mannose dehydrogenase family NAD binding domain, PF00984: UDP-glucose/GDP-mannose dehydrogenase family central domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase family UDP binding domain (68414.m03237) 1449 Not regulated NC-NC-NC 261018_at At1g26550 peptidyl-prolyl cis-trans isomerase PPIC-type family protein similar to SP|Q9Y237 Peptidyl-prolyl cis-trans isomerase NIMA- interacting 4 (EC 5.2.1.8) (Rotamase Pin4) (PPlase Pin4) (Parvulin 14) {Homo sapiens}; contains Pfam profile PF00639: PPIC-type PPIASE domain (68414.m03235) 1450 Not regulated NC-NC-NC 261023_at At1g12200 flavin-containing monooxygenase family protein/FMO family protein low similarity to FMO2 from Homo sapiens [SP|Q99518]; contains Pfam profile: PF00743 Flavin-binding monooxygenase-like (68414.m01412) 1451 Not regulated NC-NC-NC 260993_at At1g12140 flavin-containing monooxygenase family protein/FMO family protein similar to flavin-containing monooxygenase [Cavia porcellus] GI: 191259; contains Pfam profile PF00743: Flavin-binding monooxygenase-like (68414.m01406) 1452 Not regulated NC-NC-NC 260968_at At1g12250 thylakoid lumenal protein-related weak similarity to SP|O22160 Thylakoid lumenal 15 kDa protein, chloroplast precursor (p15) {Arabidopsis thaliana}; contains Pfam profile PF00805: Pentapeptide repeats (8 copies) (68414.m01417) 1453 Not regulated NC-NC-NC 260975_at At1g53430 leucine-rich repeat family protein/protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain (68414.m06056) 1454 Not regulated NC-NC-NC 260979_at At1g53510 mitogen-activated protein kinase, putative/MAPK, putative (MPK18) mitogen-activated protein kinase (MAPK)(AtMPK18), PMID: 12119167 (68414.m06068) 1455 Not regulated NC-NC-NC 260981_at At1g53460 expressed protein (68414.m06060) 1456 Not regulated NC-NC-NC 260982_at At1g53520 chalcone-flavanone isomerase-related low similarity to GI: 499036 (Vitis vinifera) (68414.m06070) 1457 Not regulated NC-NC-NC 260988_at At1g53570 mitogen-activated protein kinase kinase kinase (MAPKKK), putative (MAP3Ka) identical to MEK kinase (MAP3Ka)[Arabidopsis thaliana] gi|4204912|gb|AAD10848 (68414.m06080) 1458 Not regulated NC-NC-NC 260964_at At1g45050 ubiquitin-conjugating enzyme 15 (UBC15) E2; identical to ubiquitin-conjugating enzyme 15 GI: 2801442 from [Arabidopsis thaliana] (68414.m05165) 1459 Not regulated NC-NC-NC 260938_at At1g45170 expressed protein contains similarity to vacuolating cytotoxin (vacA) GI: 6634155 from [Helicobacter pylori] (68414.m05179) 1460 Not regulated NC-NC-NC 260940_at At1g45000 26S proteasome regulatory complex subunit p42D, putative similar to 26S proteasome regulatory complex subunit p42D [Drosophila melanogaster] gi|6434958|gb|AAF08391 (68414.m05158) 1461 Not regulated NC-NC-NC 260944_at At1g45130 beta-galactosidase, putative/lactase, putative similar to beta-galactosidase [Lycopersicon esculentum] GI: 7939619, beta- galactosidase BG1 GI: 15081596 from [Vitis vinifera]; contains Pfam profile PF01301: Glycosyl hydrolases family 35 (68414.m05173) 1462 Not regulated NC-NC-NC 260946_at At1g06010 expressed protein (68414.m00629) 1463 Not regulated NC-NC-NC 260949_at At1g06110 F-box family protein contains similarity to F-box protein FBX3 GI: 6103643 from [Homo sapiens]; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1: At5g67250 (68414.m00640) 1464 Not regulated NC-NC-NC 260953_at At1g06070 bZIP transcription factor, putative (bZIP69) similar to transcriptional activator RF2a GB: AF005492 GI: 2253277 from [Oryza sativa]; contains Pfam profile PF00170: bZIP transcription factor (68414.m00636) 1465 Not regulated NC-NC-NC 260956_at At1g06040 zinc finger (B-box type) family protein/salt-tolerance protein (STO) identical to SP|Q96288 Salt-tolerance protein [Arabidopsis thaliana]; contains Pfam profile PF00643: B-box zinc finger (68414.m00632) 1466 Not regulated NC-NC-NC 260958_at At1g06060 RanBPM-related similar to RANBPM {GI: 13194576}[Homo sapiens] (68414.m00635) 1467 Not regulated NC-NC-NC 260959_at At1g06050 expressed protein (68414.m00634) 1468 Not regulated NC-NC-NC 260927_at At1g05940 amino acid permease family protein low similarity to SP|P30823 High-affinity cationic amino acid transporter-1 (CAT-1) {Rattus norvegicus}; contains Pfam profile PF00324: Amino acid permease (68414.m00623) 1469 Not regulated NC-NC-NC 260912_at At1g02560 ATP-dependent Clp protease proteolytic subunit (ClpP1) identical to nClpP1 GB: BAA82065 GI: 5360579 from [Arabidopsis thaliana]; contains Pfam profile PF00574: Clp protease; contains TIGRfam profile TIGR00493: ATP-dependent Clp protease, proteolytic subunit ClpP (68414.m00207) 1470 Not regulated NC-NC-NC 260914_at At1g02640 glycosyl hydrolase family 3 protein similar to beta-xylosidase GB: Z84377 GI: 2102655 from [Aspergillus niger] (68414.m00214) 1471 Not regulated NC-NC-NC 260915_at At1g02660 lipase class 3 family protein contains Pfam profile PF01764: Lipase (68414.m00216) 1472 Not regulated NC-NC-NC 260916_at At1g02475 expressed protein (68414.m00198) 1473 Not regulated NC-NC-NC 260919_at At1g21520 expressed protein (68414.m02691) 1474 Not regulated NC-NC-NC 260923_at At1g21570 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) (68414.m02697) 1475 Not regulated NC-NC-NC 260924_at At1g21590 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain (68414.m02699) 1476 Not regulated NC-NC-NC 260899_at At1g21370 expressed protein (68414.m02673) 1477 Not regulated NC-NC-NC 260902_at At1g21440 mutase family protein similar to carboxyvinyl-carboxyphosphonate phosphorylmutase GB: O49290 from [Arabidopsis thaliana]; similar to carboxyphosphonoenolpyruvate mutase (GI: 47149) [Streptomyces hygroscopicus]; contains Prosite PS00161: Isocitrate lyase signature (68414.m02681) 1478 Not regulated NC-NC-NC 260872_at At1g21350 expressed protein (68414.m02669) 1479 Not regulated NC-NC-NC 260877_at At1g21500 expressed protein (68414.m02689) 1480 Not regulated NC-NC-NC 260878_at At1g21450 scarecrow-like transcription factor 1 (SCL1) identical to scarecrow-like 1 GB: AAF21043 GI: 6644390 from [Arabidopsis thaliana] (68414.m02682) 1481 Not regulated NC-NC-NC 260889_at At1g29130 1482 Not regulated NC-NC-NC 260894_at At1g29220 transcriptional regulator family protein similar to Transcriptional regulator protein HCNGP (Swiss-Prot: Q02614) [Mus musculus] (68414.m03574) 1483 Not regulated NC-NC-NC 260897_at At1g29330 ER lumen protein retaining receptor (ERD2)/HDEL receptor identical to SP: P35402 ER lumen protein retaining receptor (HDEL receptor) {Arabidopsis thaliana} (68414.m03585) 1484 Not regulated NC-NC-NC 260898_at At1g29070 ribosomal protein L34 family protein similar to plastid ribosomal protein L34 precursor GB: AAF64157 GI: 7578860 from [Spinacia oleracea] (68414.m03558) 1485 Not regulated NC-NC-NC 260871_at At1g29040 expressed protein (68414.m03554) 1486 Not regulated NC-NC-NC 260840_at At1g29050 expressed protein similar to hypothetical protein GB: AAB67625 GI: 2342727 from [Arabidopsis thaliana] (68414.m03556) 1487 Not regulated NC-NC-NC 260842_at At1g29150 26S proteasome regulatory subunit, putative (RPN6) similar to 19S proteosome subunit 9 GB: AAC34120 GI: 3450889 from [Arabidopsis thaliana] (68414.m03567) 1488 Not regulated NC-NC-NC 260843_at At1g29060 expressed protein (681414.m03557) 1489 Not regulated NC-NC-NC 260844_at At1g29260 peroxisomal targeting signal type 2 receptor (PEX7) identical to peroxisomal targeting signal type 2 receptor (Pex7p) (GI: 9502414) [Arabidopsis thaliana]; WD-40 repeat protein family member, contains 6 WD-40 repeats (PF00400); similar to peroxismal targeting signal 2 receptor (PTS2R) (Peroxin-7) (PEX7)(SP: O00628) [Homo sapiens] (68414.m03578) 1490 Not regulated NC-NC-NC 260855_at At1g21920 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein/phosphatidylinositol-4-phosphate 5-kinase- related similar to phosphatidylinositol-phosphate 5-kinase AtPIP5K1 [Arabidopsis thaliana] GI: 3702691; contains Pfam profile PF02493: MORN repeat (68414.m02743) 1491 Not regulated NC-NC-NC 260856_at At1g21910 AP2 domain-containing transcription factor family protein similar to TINY GB: CAA64359 GI: 1246403 from [Arabidopsis thaliana] (68414.m02742) 1492 Not regulated NC-NC-NC 260868_at At1g43860 expressed protein (68414.m05053) 1493 Not regulated NC-NC-NC 260813_at At1g43700 VirE2-interacting protein (VIP1) identical to VirE2-interacting protein VIP1 GB: AAF37279 GI: 7258340 from [Arabidopsis thaliana] (68414.m05020) 1494 Not regulated NC-NC-NC 260814_at At1g43710 serine decarboxylase identical to serine decarboxylase [Arabidopsis thaliana] GI: 15011302; contains Pfam profile PF00282: Pyridoxal-dependent decarboxylase conserved domain (68414.m05021) 1495 Not regulated NC-NC-NC 260817_at At1g06900 peptidase M16 family protein/insulinase family protein contains Pfam domain, PF05193: Peptidase M16 inactive domain; similar to insulin-degrading enzyme (Insulysin, Inulinase, Insulin protease) [Mouse] SWISS-PROT: Q9JHR7 (68414.m00733) 1496 Not regulated NC-NC-NC 260818_at At1g06890 transporter-related low similarity to SP|Q9NTN3 UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter {Homo sapiens}, SP|Q95YI5 UDP-sugar transporter UST74c {Drosophila melanogaster}, SP|Q18779 UDP-sugar transporter sqv-7 {Caenorhabditis elegans}; contains 8 predicted transmembrane domains (68414.m00732) 1497 Not regulated NC-NC-NC 260822_at At1g06790 RNA polymerase Rpb7 N-terminal domain-containing protein similar to SP|P35718 DNA-directed RNA polymerase III 25 kDa polypeptide (EC 2.7.7.6) {Saccharomyces cerevisiae}; contains Pfam profile PF03876: RNA polymerase Rpb7, N-terminal domain (68414.m00722) 1498 Not regulated NC-NC-NC 260832_at At1g06780 glycosyl transferase family 8 protein contains Pfam profile: PF01501 glycosyl transferase family 8 (68414.m00721) 1499 Not regulated NC-NC-NC 260835_at At1g06700 serine/threorine protein kinase, putative similar to Pto kinase interactor 1 (Pti1)[Lycopersicon esculentum] gi|3668069|gb|AAC61805 (68414.m00712) 1500 Not regulated NC-NC-NC 260780_at At1g14610 valyl-tRNA synthetase/valine-tRNA ligase (VALRS) nearly identical to SP|P93736 Valyl-tRNA synthetase (EC 6.1.1.9) (Valine- tRNA ligase) (ValRS) {Arabidopsis thaliana} (68414.m01737) 1501 Not regulated NC-NC-NC 260781_at At1g14620 expressed protein (68414.m01738) 1502 Not regulated NC-NC-NC 260782_at At1g14570 UBX domain-containing protein contains Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin interaction motif (68414.m01732) 1503 Not regulated NC-NC-NC 260784_at At1g06180 myb family transcription factor identical to GB: CAA90748 GI: 1263093 from [Arabidopsis thaliana]; contains PFAM profile: PF00249 (68414.m00650) 1504 Not regulated NC-NC-NC 260785_at At1g06200 expressed protein (68414.m00652) 1505 Not regulated NC-NC-NC 260793_at At1g06190 expressed protein (68414.m00651) 1506 Not regulated NC-NC-NC 260794_at At1g06210 VHS domain-containing protein/GAT domain-containing protein weak similarity to SP|Q9UJY5 ADP-ribosylation factor binding protein GGA1 {Homo sapiens}; contains Pfam profiles PF00790: VHS domain, PF03127: GAT domain (68414.m00653) 1507 Not regulated NC-NC-NC 260803_at At1g78340 glutathione S-transferase, putative similar to glutathione transferase GI: 2853218 from [Carica papaya] (68414.m09129) 1508 Not regulated NC-NC-NC 260807_at At1g78310 VQ motif-containing protein contains PF05678: VQ motif (68414.m09126) 1509 Not regulated NC-NC-NC 260775_at At1g78300 14-3-3 protein GF14 omega (GRF2) identical to GF14omega isoform GI: 487791 from [Arabidopsis thaliana] (68414.m09125) 1510 Not regulated NC-NC-NC 260747_at At1g78420 expressed protein (68414.m09138) 1511 Not regulated NC-NC-NC 260751_at At1g49040 stomatal cytokinesis defective/SCD1 protein (SCD1) contains Pfam PF02141: DENN (AEX-3) domain: contains Pfam PF00400: WD domain, G-beta repeat (8 copies); identical to stomatal cytokinesis defective [Arabidopsis thaliana] GI: 19743728; supporting cDNA gi|19743727|gb|AY082605.1|; PMID 12874123 (68414.m05498) 1512 Not regulated NC-NC-NC 260756_at At1g48970 eukaryotic translation initiation factor 2B family protein/eIF-2B family protein similar to guanine nucleotide exchange factor, eIF-2B, delta subunit [Mus musculus] GI: 529428; contains Pfam profile PF01008: Initiation factor 2 subunit family (68414.m05489) 1513 Not regulated NC-NC-NC 260766_at At1g48960 universal stress protein (USP) family protein contains Pfam PF00582: universal stress protein family; similar to hypothetical protein GI: 7770340 from [Arabidopsis thaliana] (68414.m05487) 1514 Not regulated NC-NC-NC 260767_s_at At1g49140 NADH-ubiquinone oxidoreductase-related similar to NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-12KD) (CI-12KD) (Swiss-Prot: Q03015)[Neurospora crassa] (68414.m05509) 1515 Not regulated NC-NC-NC 260769_at At1g49010 myb family transcription factor contains Pfam profile: PF00249 myb-tike DNA-binding domain (68414.m05495) 1516 Not regulated NC-NC-NC 260772_at At1g49050 aspartyl protease family protein contains Pfam PF00026: Eukaryotic aspartyl protease; contains similarity to nucellin GI: 2290203 from [Hordeum vulgare] (68414.m05500) 1517 Not regulated NC-NC-NC 260714_at At1g14980 10 kDa chaperonin (CPN10) identical to SP: P34893 from [Arabidopsis thaliana] (68414.m01790) 1518 Not regulated NC-NC-NC 260718_at At1g48110 expressed protein contains Pfam profile PF04146: YT521-B-like family (68414.m05359) 1519 Not regulated NC-NC-NC 260724_at At1g48140 dolichol-phosphate mannosyltransferase-related contains weak similarity to Swiss-Prot: Q9P2X0 dolichol-phosphate mannosyltransferase subunit 3 (Dolichol-phosphate mannose synthase subunit 3, Dolichyl-phosphate beta-D-mannosyltransferase subunit 3, Mannose-P-dolichol synthase subunit 3, MPD synthase subunit 3, DPM synthase complex subunit 3, Prostin 1 [Homo sapiens] (68414.m05372) 1520 Not regulated NC-NC-NC 260730_at At1g48030 dihydrolipoamide dehydrogenase 1, mitochondrial/lipoamide dehydrogenase 1 (MTLPD1) identical to GB: AAF34795 [gi: 12704696] from [Arabidopsis thaliana] (68414.m05350) 1521 Not regulated NC-NC-NC 260711_at At1g17580 myosin, putative similar to myosin GI: 433663 from (Arabidopsis thaliana) (68414.m02165) 1522 Not regulated NC-NC-NC 260682_at At1g17510 expressed protein (68414.m02151) 1523 Not regulated NC-NC-NC 260696_at At1g32520 expressed protein (68414.m04013) 1524 Not regulated NC-NC-NC 260700_at At1g32260 expressed protein identical to hypothetical protein GB: AAF81322 GI: 8920600 from [Arabidopsis thaliana] (68414.m03969) 1525 Not regulated NC-NC-NC 260704_at At1g32470 glycine cleavage system H protein, mitochondrial, putative similar to SP|P25855 Glycine cleavage system H protein 1. mitochondrial precursor {Arabidopsis thaliana}; contains Pfam profile PF01597: Glycine cleavage H-protein (68414.m04007) 1526 Not regulated NC-NC-NC 260705_at At1g32400 senescence-associated family protein contains Pfam profile PF03335: Tetraspanin family (68414.m03997) 1527 Not regulated NC-NC-NC 260707_s_at At1g32410 vacuolar protein sorting 55 family protein/VPS55 family protein contains Pfam domain PF04133: Vacuolar protein sorting 55 (68414.m03999) 1528 Not regulated NC-NC-NC 260709_at At1g32500 ATP-binding-cassette transporter, putative similar to ATP-binding-cassette transporter (ABC1) described in PMID; 11156608 (68414.m04010) 1529 Not regulated NC-NC-NC 260652_at At1g32360 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) (68414.m03989) 1530 Not regulated NC-NC-NC 260653_at At1g32440 pyruvate kinase, putative similar to pyruvate kinase isozyme G, chloroplast precursor [Nicotiana tabacum] SWISS-PROT: Q40546 (68414.m04004) 1531 Not regulated NC-NC-NC 260665_at At1g19360 expressed protein (68414.m02409) 1532 Not regulated NC-NC-NC 260667_at At1g19440 very-long-chain fatty acid condensing enzyme, putative similar to GB: AAD37122 from [Arabidopsis thaliana] (68414.m02422) 1533 Not regulated NC-NC-NC 260671_at At1g19310 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68414.m02401) 1534 Not regulated NC-NC-NC 260676_at At1g19450 integral membrane protein, putative/sugar transporter family protein similar to GB: U43629 GI: 1209756 integral membrane protein from [Beta vulgaris]; contains Pfam profile PF00083: major facilitator superfamily protein; contains TIGRfam TIGR00879: Sugar transporter (68414.m02423) 1535 Not regulated NC-NC-NC 260619_at At1g08110 lactoylglutathione lyase, putative/glyoxalase I, putative similar to lactoylglutathione lyase SP: O04885 from [Brassica juncea] (68414.m00888) 1536 Not regulated NC-NC-NC 260626_at At1g08040 expressed protein contains Pfam profile PF05212: Protein of unknown function (DUF707) (68414.m00878) 1537 Not regulated NC-NC-NC 260635_at At1g62420 expressed protein contains Pfam profile PF04720: Protein of unknown function (DUF506) (68414.m07042) 1538 Not regulated NC-NC-NC 260638_at At1g62390 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein/tetratricopeptide repeat (TPR)-containing protein contains Pfam profiles PF00564: PB1 domain, PF00515: TPR Domain (68414.m07039) 1539 Not regulated NC-NC-NC 260644_at At1g53290 galactosyltransferase family protein contains Pram profile: PF01762 galactosyltransferase; contains similarity to Avr9 elicitor response protein GI: 4138265 from [Nicotiana tabacum] (68414.m06040) 1540 Not regulated NC-NC-NC 260616_at At1g53280 DJ-1 family protein similar to DJ-1 protein [Homo sapiens] GI: 1780755; similar to DJ-1 beta (GI: 18642508) [Drosophila melanogaster]; contains Pfam profile: PF01965 ThiJ/PfpI family; TIGRFAM TIGR01383: DJ-1 family protein (68414.m06038) 1541 Not regulated NC-NC-NC 260587_at At1g53210 sodium/calcium exchanger family protein/calcium-binding EF hand family protein contains Pfam profiles: PF01699 sodium/calcium exchanger protein, PF00036 EF hand (68414.m06031) 1542 Not regulated NC-NC-NC 260588_at At1g53320 F-box family protein/tubby family protein (TULP7) similar to Tubby related protein 2 (Tubby-like protein 2) (P4-6 protein) (Fragment) (SP: P46686) [Mus musculus]; similar to phosphodiesterase (GI: 467578) [Mus musculus]; similar to Tubby protein homolog 1. (Swiss-Prot: Q09306) [Caenorhabditis elegants] contains Pfam profile: PF01167: Tub family: contains Pfam PF00648: F- box domain (68414.m06043) 1543 Not regulated NC-NC-NC 260595_at At1g55890 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat (68414.m06410) 1544 Not regulated NC-NC-NC 260603_at At1g55960 expressed protein weak similarity to SP|P53808 Phosphatidylcholine transfer protein (PC-TP) {Mus musculus} (68414.m06418) 1545 Not regulated NC-NC-NC 260604_at At1g55840 SEC14 cytosolic factor (SEC14)/phosphoglyceride transfer protein similar to polyphosphoinositide binding protein SEC14 homolog Ssh1p (GB: AAB94598) [Glycine max]; identified in Eur J Biochem 1998 Dec 1; 258(2): 402-10 as AtSEC14, characterized by functional complementation in S. cerevisiae. (68414.m06404) 1546 Not regulated NC-NC-NC 260605_at At2g43780 expressed protein (68415.m05442) 1547 Not regulated NC-NC-NC 260606_at At2g43770 transducin family protein/WD-40 repeat family protein contains 7 WD-40 repeats (PF00400); similar to U5 snRNP-specific 40 kDa protein (GI: 3820594) (Homo sapiens) (68415.m05441) 1548 Not regulated NC-NC-NC 260586_at At2g43630 expressed protein (68415.m05423) 1549 Not regulated NC-NC-NC 260582_at At2g43850 ankyrin protein kinase, putative (APK1) similar to ankyrin-kinase [Medicago truncatula] gi|18700701|gb|AAL78674; contains Pfam profile PF00069: Protein kinase domain; contains Pfam profile PF00023: Ankyrin repeat (68415.m05451) 1550 Not regulated NC-NC-NC 260566_at At2g43750 cysteine synthase, chloroplast/O-acetylserine (thiol)-lyase/O-acetylserine sulfhydrylase/cpACS1 (OASB) identical to SP|P47999 Cysteine synthase, chloroplast precursor (EC 4.2.99.8) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (cpACS1) {Arabidopsis thaliana}; identical to cDNA O-acetylserine lyase (At.OAS.7-4) GI: 6983575 (68415.m05439) 1551 Not regulated NC-NC-NC 260571_at At2g43790 mitogen-activated protein kinase, putative/MAPK, putative (MPK6) identical to mitogen-activated protein kinase homolog 6 (AtMPK6)[Arabidopsis thaliana] SWISS-PROT: Q39028; PMID: 12119167 (68415.m05443) 1552 Not regulated NC-NC-NC 260572_at At2g43760 molybdopterin biosynthesis MoaE family protein contains Pfam profile: PF02391 molybdopterin converting factor, subunit 2 (68415.m05440) 1553 Not regulated NC-NC-NC 260578_at At2g47350 PAPA-1-like family protein/zinc finger (HIT type) family protein contains Pfam domains, PF04795: PAPA-1-like conserved region and PF04438: HIT zinc finger (68415.m05910) 1554 Not regulated NC-NC-NC 260579_at At2g47380 cytochrome c oxidase subunit Vc family protein/COX5C family protein contains Pfam profile: PF05799 cytochrome c oxidase subunit Vc (COX5C) (68415.m05914) 1555 Not regulated NC-NC-NC 260525_at At2g47250 RNA helicase, putative similar to SP|P53131 Pre-mRNA splicing factor RNA helices. PRP43 (Helicase JA1) (Saccharomyces cerevisiae); contains Pfam profiles PF04406: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain (68415.m05900) 1556 Not regulated NC-NC-NC 260529_at At2g47400 CP12 domain-containing protein contains Pfam profile: PF02672 CP12 domain (68415.m05916) 1557 Not regulated NC-NC-NC 260532_at At2g47330 DEAD/DEAH box helicase, putative similar to RNA helicase [Rattus norvegicus] GI: 897915; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain (68415.m05908) 1558 Not regulated NC-NC-NC 260538_at At2g43460 60S ribosomal protein L38 (RPL38A) (68415.m05401) 1559 Not regulated NC-NC-NC 260542_at At2g43560 immunophilin/FKBP-type peptidyl-prolyl cis-trans isomerase family protein identical to Probable FKBP-type peptidyl-prolyl cis-trans isomerase 2, chloroplast precursor (Ppiase) (Rotamase) (SP: O22870)[Arabidopsis thaliana]; contains Pfam PF00254: peptidyl- protyl cis-trans isomerase, FKBP-type (68415.m05412) 1560 Not regulated NC-NC-NC 260543_at At2g43330 sugar transporter family protein similar to SP|Q96QE2 Proton myo-inositol co-transporter (Hmit) [Homo sapiens], SP|Q01440 Membrane transporter D1 {Leishmania donovani}; contains Pfam profile PF00083: major facilitator superfamily protein (68415.m05388) 1561 Not regulated NC-NC-NC 260544_at At2g43540 expressed protein (68415.m05410) 1562 Not regulated NC-NC-NC 260545_at At2g43350 glutathione peroxidase, putative (68415.m05390) 1563 Not regulated NC-NC-NC 260546_at At2g43520 trypsin inhibitor, putative similar to SP|P26780 Trypsin inhibitor 2 precursor (MTI-2) {Sinapis alba} (68415.m05411) 1564 Not regulated NC-NC-NC 260547_at At2g43550 trypsin inhibitor, putative similar to SP|P26780 Trypsin inhibitor 2 precursor (MTI-2) {Sinapis alba} (68415.m05411) 1565 Not regulated NC-NC-NC 260548_at At2g43360 biotin synthase (BioB) (BIO2) identical to SP|P54967 Pfam profile PF04055: radical SAM domain protein (68415.m05391) 1566 Not regulated NC-NC-NC 260549_at At2g43535 trypsin inhibitor, putative similar to SP|P26780 Trypsin inhibitor 2 precursor (MTI-2) {Sinapis alba} (68415.m05409) 1567 Not regulated NC-NC-NC 260550_at At2g43420 3-beta hydroxysteroid dehydrogenase/isomerase family protein contains Pfam profile PF01073 3-beta hydroxysteroid dehydrogenase/isomerase domain; similar to NAD(P)-dependent steroid dehydrogenase from Homo sapiens [SP|Q15738], Mus musculus [SP|Q9R1J0] (68415.m05396) 1568 Not regulated NC-NC-NC 260552_at At2g43430 hydroxyacylglutathione hydrolase, mitochondrial/glyoxalase II (GLX2-1) identical to SP|O24495 Hydroxyacylglutathione hydrolase, mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II) (Glx II) {Arabidopsis thaliana} (68415.m05397) 1569 Not regulated NC-NC-NC 260553_at At2g41800 expressed protein contains Pfam profile PF04862: Protein of unknown function, DUF642 (68415.m05166) 1570 Not regulated NC-NC-NC 260554_at At2g41790 peptidase M16 family protein/insulinase family protein contains Pfam domain, PF05193: Peptidase M16 inactive domain; similar to insulin-degrading enzyme (Insulysin, Insulinase, Insulin protease) [Mouse] SWISS-PROT: Q9JHR7 (68415.m05165) 1571 Not regulated NC-NC-NC 260523_at At2g41720 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat (68415.m05156) 1572 Not regulated NC-NC-NC 260497_at At2g41840 40S ribosomal protein S2 (RPS2C) (68415.m05171) 1573 Not regulated NC-NC-NC 260498_at At2g41710 ovule development protein, putative similar to ovule development protein AINTEGUMENTA (GI: 1209099) [Arabidopsis thaliana]; Pfam domain (PF00847) (68415.m05154) 1574 Not regulated NC-NC-NC 260499_at At2g41760 expressed protein (68415.m05162) 1575 Not regulated NC-NC-NC 260502_at At1g47270 F-box family protein/tubby family protein contains Pfam profiles: PF00646 F-box domain, PF01167 Tub family; similar to Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length(GI: 6730158) [Mus musculus]; similar to phosphodiesterase (GI: 467578) [Mus musculus]; similar to Tubby protein homolog (Swiss-Prot: O88808) [Rattus norvegicus] (68414.m05233) 1576 Not regulated NC-NC-NC 260503_at At1g47250 20S proteasome alpha subunit F2 (PAF2) (PRC2B) (PRS1) identical to GB: AAC32063 from [Arabidopsis thaliana] (Genetics 149 (2), 677-692 (1998)); identical to cDNA proteasome subunit prc2b GI: 2511585 (68414.m05231) 1577 Not regulated NC-NC-NC 260507_at At1g47200 MFP1 attachment factor, putative contains similarity to MFP1 attachment factor 1 GI: 7546725 from [Lycopersicon esculentum] similar to MFP1 attachment factor 1 [Glycine max] gi|7546729|gb|AAF63659 (68414.m05223) 1578 Not regulated NC-NC-NC 260508_at At1g47260 bacterial transferase hexapeptide repeat-containing protein contains Pfam profile PF00132: Bacterial transferase hexapeptide (four repeats) (68414.m05232) 1579 Not regulated NC-NC-NC 260509_at At1g47240 NRAMP metal ion transporter 2, putative (NRAMP2) similar to metal transporter Nramp3 [Arabidopsis thaliana] gi|6468012|gb|AAF13278; member of the natural resistance-associated macrophage protein (NRAMP) metal transporter family, PMID: 11500563 (68414.m05230) 1580 Not regulated NC-NC-NC 260511_at At1g51570 C2 domain-containing protein contains INTERPRO: IPR000008 C2 domain (68414.m05804) 1581 Not regulated NC-NC-NC 260517_at At1g51420 sucrose-phosphatase, putative similar to sucrose-phosphatase (SPP1) [Arabidopsis thaliana] GI: 11127757; contains Pfam profile PF05116: Sucrose-6F-phosphate phosphohydrolase (68414.m05788) 1582 Not regulated NC-NC-NC 260519_at At1g51540 ketch repeat-containing protein contains Pfam profile PF01344: Kelch motif (68414.m05801) 1583 Not regulated NC-NC-NC 260465_at At1g10910 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat (68414.m01253) 1584 Not regulated NC-NC-NC 260466_at At1g10900 phosphatidylinositol-4-phosphate 5-kinase family protein similar to phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1 [Arabidopsis thaliana] GI: 3702891; contains Pfam profiles PF01504: Phosphatidylinositol-4-phosphate 5-Kinase, PF02493: MORN repeat (68414.m01252) 1585 Not regulated NC-NC-NC 260476_at At1g11060 expressed protein (68414.m01267) 1586 Not regulated NC-NC-NC 260482_at At1g10950 endomembrane protein 70, putative (68414.m01257) 1587 Not regulated NC-NC-NC 260442_at At1g68220 expressed protein (68414.m07793) 1588 Not regulated NC-NC-NC 260443_at At1g68185 ubiquitin-related similar to ubiquitin-like protein smt3/pmt3 SP: O13351 from [Fission yeast] (68414.m07789) 1589 Not regulated NC-NC-NC 260444_at At1g68300 universal stress protein (USP) family protein similar to ER6 protein [Lycopersicon esculentum] GI: 5669654; contains Pfam profile PF00582: universal stress protein family (68414.m07802) 1590 Not regulated NC-NC-NC 260426_at At1g72370 40S ribosomal protein SA (RPSaA) identical to laminin receptor-like protein GB: U01955 [Arabidopsis thaliana]; identical to cDNA laminin receptor homologue GI: 16379 (68414.m08371) 1591 Not regulated NC-NC-NC 260428_at At1g72340 eukaryotic translation initiation factor 2B family protein/eIF-2B family protein similar to SP|Q64270 Translation initiation factor eIF- 2B alpha subunit (Rattus norvegicus); contains Pfam profile PF01008: Initiation factor 2 subunit family (68414.m08368) 1592 Not regulated NC-NC-NC 260403_at At1g69810 WRKY family transcription factor (68414.m08032) 1593 Not regulated NC-NC-NC 260409_at At1g69935 expressed protein (68414.m08048) 1594 Not regulated NC-NC-NC 260413_at At1g69800 CBS domain-containing protein low similarity to SP|Q9UGI9 5′-AMP-activated protein kinase, gamma-3 subunit (AMPK gamma-3 chain) (AMPK gamma3) {Homo sapiens}; contains Pfam profile PF00571: CBS domain (68414.m08031) 1595 Not regulated NC-NC-NC 260418_s_at At1g69750 cox19 family protein contains Pfam profile PF05490: Cox19 protein (68414.m08026) 1596 Not regulated NC-NC-NC 260419_at At1g69730 protein kinase family protein contains Pfam profile: PF00069 Eukaryotic protein kinase domain (68414.m08024) 1597 Not regulated NC-NC-NC 260421_at At1g69640 acid phosphatase, putative similar to GI: 5360721 from [Lupinus albus] (68414.m08012) 1598 Not regulated NC-NC-NC 260395_at At1g69780 homeobox-leucine zipper protein 13 (HB-13)/HD-ZIP transcription factor 13 identical to homeobox gene 13 protein (GP: 12325190) [Arabidopsis thaliana] (68414.m08029) 1599 Not regulated NC-NC-NC 260368_at At1g69700 ABA-responsive protein (HVA22c) identical to AIHVA22c [Arabidopsis thaliana] GI: 4884936 (68414.m08021) 1600 Not regulated NC-NC-NC 260369_at At1g69620 60S ribosomal protein L34 (RPL34B) similar to SP: Q42351 from [Arabidopsis thaliana] (68414.m08008) 1601 Not regulated NC-NC-NC 260370_at At1g69740 porphobilinogen synthase, putative/delta-aminolevulinic acid dehydratase, putative similar to delta-aminolevulinic acid dehydratase (Alad) GI: 493019 [SP|P43210] from Glycine max, SP|P24493 from Spinacia olerecea, SP|P30124 from Pisum sativum (68414.m08025) 1602 Not regulated NC-NC-NC 260371_at At1g69690 TCP family transcription factor, putative similar to PCF1 (GI: 2580438) and PCF2 [(GI: 2580440) Oryza sativa] (68414.m08020) 1603 Not regulated NC-NC-NC 260374_at At1g73960 expressed protein similar to TATA binding protein associated factor (GI: 2827282) [Homo sapiens]; similar to Transcription initiation factor TFIID 150 kDa subunit (TAFII-150) (TAFII150) (Swiss-Prot: Q24325) [Drosophila melanogaster] (68414.m08565) 1604 Not regulated NC-NC-NC 260379_at At1g73880 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase (68414.m08556) 1605 Not regulated NC-NC-NC 260383_s_at At1g74060 60S ribosomal protein L6 (RPL6B) similar to 60S ribosomal protein L6 (YL 16 like) GB: CAB57309 from [Cyanophora paradoxa] (68414.m08578) 1606 Not regulated NC-NC-NC 280390_at At1g73940 expressed protein (68414.m08563) 1607 Not regulated NC-NC-NC 260391_at At1g74020 strictosidine synthase family protein similar to strictosidine synthase [Rauvolfia serpentina][SP|P15324]; contains strictosidine synthase domain PF03088 (68414.m08572) 1608 Not regulated NC-NC-NC 260393_at At1g73920 lipase family protein similar to lipase GB: CAA74737 [SP|O46108] from [Drosophila melanogaster] (68414.m08560) 1609 Not regulated NC-NC-NC 260336_at At1g73990 peptidase U7 family protein similar to protease IV GB: AAA57008 from [Escherichia coli]; contains Pfam profile PF01343: Peptidase family U7 (68414.m08569) 1610 Not regulated NC-NC-NC 260338_at At1g69250 nuclear transport factor 2 (NTF2) family protein/RNA recognition motif (RRM)-containing protein contains Pfam profiles PF02136: Nuclear transport factor 2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (68414.m07935) 1611 Not regulated NC-NC-NC 260339_at At1g69220 serine/threonine protein kinase, putative identical to serine/threonine kinase [Arabidopsis thaliana] gi|2352084|gb|AAB68776 (68414.m07925) 1612 Not regulated NC-NC-NC 260345_at At1g69270 leucine-rich repeat family protein/protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat end PF00069: Protein kinase domain (68414.m07941) 1613 Not regulated NC-NC-NC 260350_at At1g69410 eukaryotic translation initiation factor 5A, putative/eIF-5A, putative strong similarity to eukaryotic initiation factor 5A (2) (Nicotiana plumbaginifolia) GI: 19702, SP|Q9AXQ6| Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) {Lycopersicon esculentum} (68414.m07972) 1614 Not regulated NC-NC-NC 260352_at At1g69295 beta-1,3-glucanase-related low similarity to elicitor inducible beta-1,3-glucanase NtEIG-E76 [Nicotiana tabacum] GI: 11071974 (68414.m07947) 1615 Not regulated NC-NC-NC 260356_at At1g69390 chloroplast division protein, putative (MinE1) identical to chloroplast division protein homolog MinE1 GI: 17511220 from [Arabidopsis thaliana] (68414.m07966) 1616 Not regulated NC-NC-NC 260358_at At1g69340 appr-1-p processing enzyme family protein contains Pfam domain PF01661: Appr-1-p processing enzyme family (68414.m07956) 1617 Not regulated NC-NC-NC 260360_at At1g69370 chorismate mutase, putative similar to gi: 5732016 and SP|P42738; contains Pfam profile: PF01817: Chorismate mutase (68414.m07962) 1618 Not regulated NC-NC-NC 260362_at At1g70530 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain (68414.m08117) 1619 Not regulated NC-NC-NC 260303_at At1g70520 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain (68414.m08116) 1620 Not regulated NC-NC-NC 260304_at At1g70480 expressed protein contains Pfam profile PF02713: Domain of unknown function DUF220 (68414.m08109) 1621 Not regulated NC-NC-NC 260305_at At1g70490 ADP-ribosylation factor, putative nearly identical to ADP-ribosylation factor 1 GB: P36397 [Arabidopsis thaliana], ADP-ribosylation factor GI: 166586 [Arabidopsis thaliana] (68414.m08110) 1622 Not regulated NC-NC-NC 260308_at At1g70610 ABC transporter (TAP1) contains Pfam profile: PF00005 ABC transporters; similar to TAP1 protein (transporter of processed antigen) GB: AAD53033 (Oncorhynchus mykiss); identical to cDNA transporter associated with antigen processing-like protein (TAP1) GI: 19335721 (68414.m08135) 1623 Not regulated NC-NC-NC 260309_at At1g70580 glutamate:glyoxylate aminotransferase 2 (GGT2) identical to glutamate:glyoxylate aminotransferase 2 [Arabidopsis thaliana] GI: 24461829; similar to alanine aminotransferase from Panicum miliaceum [SP|P34106], GI: 4730884 from Oryza sativa; contains Pfam profile PF00155: aminotransferase, classes I and II (68414.m08127) 1624 Not regulated NC-NC-NC 260310_at At1g70590 F-box family protein contains Pfam PF00646: F-box domain; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1: At5g67250 (68414.m08131) 1625 Not regulated NC-NC-NC 260314_at At1g63830 proline-rich family protein contains proline-rich extensin domains, INTERPRO: IPR002965; contains 1 predicted transmembrane domain (68414.m07223) 1626 Not regulated NC-NC-NC 260321_at At1g63900 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68414.m07235) 1627 Not regulated NC-NC-NC 260323_at At1g63780 brix domain-containing protein contains Pfam domain, PF04427: Brix domain (68414.m07218) 1628 Not regulated NC-NC-NC 260324_at At1g63970 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, putative similar to 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GI: 7621712 from [Catharanthus roseus] (68414.m07245) 1629 Not regulated NC-NC-NC 260330_at At1g80400 zinc finger (C3HC4-type RING finger) family protein low similarity to SP|Q90972 RING finger protein 13 (Gallus gallus); contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68414.m09412) 1630 Not regulated NC-NC-NC 260331_at At1g80270 DNA-binding protein, putative similar to DNA-binding protein [Triticum aestivum] GI: 6958202; contains Pfam profile: PF01535 PPR repeat (68414.m09397) 1631 Not regulated NC-NC-NC 260274_at At1g80460 glycerol kinase, putative similar to glycerol kinase (ATP: glycerol 3-phosphotransferase, Glycerokinase, GK)[Mycobacterium tuberculosis] Swiss-Prot: O69664 (68414.m09423) 1632 Not regulated NC-NC-NC 260276_at At1g80450 VQ motif-containing protein contains PF05678: VQ motif (68414.m09421) 1633 Not regulated NC-NC-NC 260281_at At1g80500 expressed protein similar to Sedlin (Swiss-Prot: O14582) [Homo sapiens]; similar to MBP-1 interacting protein-2A; MIP-2A (GI: 9937493) [Homo sapiens] (68414.m09433) 1634 Not regulated NC-NC-NC 260286_at At1g80600 acetylomithine aminotransferase, mitochondrial, putative/acetylomithine transaminase, putative/AOTA, putative/ACOAT, putative similar to SP|O04866 Acetylomithine aminotransferase, mitochondrial precursor (EC 26.1.11) (ACOAT) (Acetylomithine transaminase) (AOTA) (Alnus glutinosa); contains Pfam profile PF00202: aminotransferase, class III (68414.m09457) 1635 Not regulated NC-NC-NC 260288_at At1g80530 nodulin family protein similar to nodulin-like protein [Arabidopsis thaliana] GI: 3329368, nodule-specific protein NIj70 [Lotus japonicus] GI: 3329366 (68414.m09439) 1636 Not regulated NC-NC-NC 260294_at At1g63660 GMP synthase [glutamine-hydrolyzing], putative/glutamine amidotransferase, putative similar to SP|P38625 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) (Glutamine amidotransferase) (GMP synthetase) {Saccharomyces cerevisiae}; contains Pfam profile PF00117: glutamine amidotransferase class-I (68414.m07203) 1637 Not regulated NC-NC-NC 260295_at At1g63770 peptidase M1 family protein similar to SP|P04825 Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide hydrolase) {Escherichia coli}; contains Pfam profile PF01433: Peptidase family M1 (68414.m07216) 1638 Not regulated NC-NC-NC 260271_at At1g63690 protease-associated (PA) domain-containing protein contains protease associated (PA) domain, Pfam: PF02225 (68414.m07207) 1639 Not regulated NC-NC-NC 260254_at At1g74210 glycerophosphoryl diester phosphodiesterase family protein low similarity to glycerophosphodiester phosphodiesterase [Borrelia hermsii] GI: 1399038; contains Pfam profile PF03009: Glycerophosphoryl diester phosphodiesterase family (68414.m06595) 1640 Not regulated NC-NC-NC 260257_at At1g74340 dolichol phosphate-mannose biosynthesis regulatory protein-related similar to dolichol phosphate-mannose biosynthesis regulatory protein SP: Q9Z324 from [Mus musculus] (68414.m08611) 1641 Not regulated NC-NC-NC 260267_at At1g68530 very-long-chain fatty acid condensing enzyme (CUT1) identical to very-long-chain fatty acid condensing enzyme (CUT1) GB: AF129511 (required for cuticular wax biosynthesis and pollen fertility: Millar, A. A., et al., Plant Cell (1999)) (68414.m07828) 1642 Not regulated NC-NC-NC 260211_at At1g74440 expressed protein similar to YGL010w-like protein GB: AAC32136 [Picea mariana] (68414.m08624) 1643 Not regulated NC-NC-NC 260215_at At1g74530 expressed protein (68414.m08634) 1644 Not regulated NC-NC-NC 260229_at At1g74370 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68414.m08616) 1645 Not regulated NC-NC-NC 260231_at At1g74410 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68414.m08620) 1646 Not regulated NC-NC-NC 260232_at At1g74640 expressed protein contains Pfam profile: PF00561 alpha/beta hydrolase fold (68414.m08644) 1647 Not regulated NC-NC-NC 260235_at At1g74560 nucleosome assembly protein (NAP) family protein similar to SP|Q01105 SET protein (HLA-DR associated protein II) (PHAPII) (Phosphatase 2A inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile: PF00956 nucleosome assembly protein (NAP) (68414.m08638) 1648 Not regulated NC-NC-NC 260236_at At1g74470 geranylgeranyl reductase identical to geranylgeranyl reductase GB: Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15; 251(1-2): 413-7) (68414.m08627) 1649 Not regulated NC-NC-NC 260238_at At1g74520 ABA-responsive protein (HVA22a) identical to AIHVA22a [Arabidopsis thaliana] GI: 4884932 (68414.m08633) 1650 Not regulated NC-NC-NC 260239_at At1g74360 leucine-rich repeat transmembrane protein kinase, putative similar to brassinosteroid insensitive 1 GB: AAC49810 (putative receptor protein kinase); contains Pfam profiles: PF00560 Leucine Rich Repeat (17 repeats), PF00069 Eukaryotic protein kinase domain (68414.m08615) 1651 Not regulated NC-NC-NC 260207_at At1g70730 phosphoglucomutase, cytoplasmic, putative/glucose phosphomutase, putative strong similarity to SP|P93804 Phosphoglucomutase, cytoplasmic 1 (EC 5.4.2.2) (Glucose phosphomutase 1) (PGM 1) {Zea mays}; contains InterPro accession IPR006352: Phosphoglucosamine mutase (68414.m08153) 1652 Not regulated NC-NC-NC 260190_at At1g67560 lipoxygenase family protein similar to 13-lipoxygenase GB: CAA65269 [Solanum tuberosum], gi: 1654140 [Lycopersicon esculentum] (68414.m07697) 1653 Not regulated NC-NC-NC 260151_at At1g52910 expressed protein (68414.m05983) 1654 Not regulated NC-NC-NC 260156_at At1g52880 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAM (no apical meristem) GB: CAA63101 from [Petunia x hybrida]; identical to cDNA NAC domain protein GI: 4325285 (68414.m05979) 1655 Not regulated NC-NC-NC 260157_at At1g52930 brix domain-containing protein contains Pfam domain, PF04427: Brix domain (68414.m05985) 1656 Not regulated NC-NC-NC 260165_at At1g79850 30S ribosomal protein S17, chloroplast/CS17 (RPS17) identical to 30S ribosomal protein S17, chloroplast precursor GB: P16180 [Arabidopsis thaliana] (68414.m09328) 1657 Not regulated NC-NC-NC 260125_at At1g36390 co-chaperone grpE family protein similar to co-chaperone CGE1 precursor isoform b [Chlamydomonas reinhardtii] GI: 15384279; contains Pfam profile PF01025: co-chaperone GrpE (68414.m04520) 1658 Not regulated NC-NC-NC 260127_at At1g36320 expressed protein similar to hypothetical protein GB: CAB37532 from [Arabidopsis thaliana], (68414.m04514) 1659 Not regulated NC-NC-NC 260128_at At1g36310 expressed protein (68414.m04513) 1660 Not regulated NC-NC-NC 260137_at At1g66330 senescence-associated family protein similar to senescence-associated protein (GI: 12836895) [Ipomoea batatas] (68414.m07532) 1661 Not regulated NC-NC-NC 260107_at At1g68430 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase (68414.m07548) 1662 Not regulated NC-NC-NC 260083_at At1g63220 C2 domain-containing protein similar to phloem protein RPP16 [Oryza sativa (japonica cultivar-group)] GI: 21998839; contains Pfam profile PF00168: C2 domain (68414:m07146) 1663 Not regulated NC-NC-NC 260087_at At1g73200 expressed protein (68414.m08471) 1664 Not regulated NC-NC-NC 260089_at At1g73170 expressed protein (68414.m08466) 1665 Not regulated NC-NC-NC 260094_at At1g73250 GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase (GER1) identical to GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4 reductase (GER1)GI: 6016479 from [Arabidopsis thaliana] (68414.m08477) 1666 Not regulated NC-NC-NC 260095_at At1g73230 nascent polypeptide-associated complex (NAC) domain-containing protein similar to SP|P20290 Transcription factor BTF3 (RNA polymerase B transcription factor 3) {Homo sapiens}; contains Pfam profile PF01849: NAC domain (68414.m08475) 1667 Not regulated NC-NC-NC 260099_at At1g73180 eukaryotic translation initiation factor-related similar to eukaryotic translation initiation factor 2A (GI: 21956484) [Homo sapiens]; similar to Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Swiss-Prot: P55884) [Homo sapiens] (68414.m08469) 1668 Not regulated NC-NC-NC 260102_at At1g35470 SPIa/RYanodine receptor (SPRY) domain-containing protein similar to RanBPM [Homo sapiens] GI: 15080674; contains Pfam profile PF00622: SPRY domain (68414.m04400) 1669 Not regulated NC-NC-NC 260106_at At1g35420 dienelactone hydrolase family protein low similarity to dienelactone hydrolase [Rhodococcus opacus] GI: 23094407; contains Pfam profile PF01738: Dienelactone hydrolase family (68414.m04394) 1670 Not regulated NC-NC-NC 260079_s_at At1g35460 basic helix-loop-helix (bHLH) family protein similar to GI: 6166283 from [Pinus taeda] (68414.m04398) 1671 Not regulated NC-NC-NC 260082_at At1g78180 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein (68414.m09110) 1672 Not regulated NC-NC-NC 260051_at At1g78210 hydrolase, alpha/beta fold family protein low similarity to hydrolases from Rhodococcus sp. EtbD2 GI: 3273241, EtbD1 GI: 3273239; contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68414.m09114) 1673 Not regulated NC-NC-NC 260055_at At1g78150 expressed protein (68414.m09107) 1674 Not regulated NC-NC-NC 260056_at At1g78140 methyltransferase-related similar to Probable delta(24)-sterol C-methyltransferase (Swiss-Prot: O14321) [Schizosaccharomyces pombe]; similar to C5-O-methyltransferase (GI: 5921167) [Streptomyces avermitilis]; similar to S-adenosyl-methionine-sterol-C- methyltransferase (GI: 3560474) [Nicotiana tabacum] (68414.m09106) 1675 Not regulated NC-NC-NC 260057_at At1g78200 protein phosphatase 2C, putative/PP2C, putative similar to protein phosphatase 2C GB: CAA72341 [Medicago sativa]; contains Pfam profile: PF00481 Protein phosphatase 2C (68414.m09112) 1676 Not regulated NC-NC-NC 260060_at At1g73680 pathogen-responsive alpha-dioxygenase, putative similar to pathogen-inducible alpha-dioxygenase [Nicotiana attenuata] GI: 12539609; contains Pfam profile PF03098: Animal haem peroxidase (68414.m08532) 1677 Not regulated NC-NC-NC 260063_at At1g73720 transducin family protein/WD-40 repeat family protein contains 5 WD-40 repeats (PF00400); similar to Will the slowly protein (SP: Q9V3J8)[Drosophila melanogaster] (68414.m08536) 1678 Not regulated NC-NC-NC 260070_at At1g73830 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain (68414.m08548) 1679 Not regulated NC-NC-NC 260071_at At1g73840 hydroxyproline-rich glycoprotein family protein similar to proline-rich protein precursor GB: AAC34889 [Glycine max] (68414.m08549) 1680 Not regulated NC-NC-NC 260073_at At1g73660 protein kinase family protein contains Pfam profile: PF00069 eukaryotic protein kinase domain (68414.m08530) 1681 Not regulated NC-NC-NC 260076_at At1g73630 calcium-binding protein, putative similar to calcium binding protein GI: 14589311 from [Sesbania rostrata]; contains Pfam profile: PF00036 EF hand (4 copies) (68414.m08524) 1682 Not regulated NC-NC-NC 260076_at At1g73790 expressed protein (68414.m08543) 1683 Not regulated NC-NC-NC 260044_at At1g73655 immunophilin/FKBP-type peptidyl-prolyl cis-trans isomerase family protein similar to (Peptidyl-prolyl cis-trans isomerase) (PPiese) (Rotamase) (SP: Q26486) [Spodoptera frugiperda]; contains Pfam PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type (68414.m08529) 1684 Not regulated NC-NC-NC 260048_at At1g73750 expressed protein contains Pfam profile: PF00561 alpha/beta hydrolase fold (68414.m08539) 1685 Not regulated NC-NC-NC 260049_at At1g29940 DNA-directed RNA polymerase family protein similar to SP|P22138 DNA-directed RNA polymerase I 135 kDa polypeptide (EC 2.7.7.6) (RNA polymerase I subunit 2) {Saccharomyces cerevisiae}; contains Pfam profiles PF04563; RNA polymerase beta subunit, PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2 domain 3, PF00562: RNA polymerase Rpb2 domain 6 (68414.m03658) 1686 Not regulated NC-NC-NC 260020_at At1g29990 prefoldin, putative similar to Swiss-Prot: O15212 prefoldin subunit 6 (Protein Ka2) [Homo sapiens] (68414.m03668) 1687 Not regulated NC-NC-NC 260028_at At1g29980 expressed protein contains Pfam profile PF04862: Protein of unknown function, DUF642 (68414.m03666) 1688 Not regulated NC-NC-NC 260042_at At1g68820 membrane protein, putative contains 7 transmembrane domains; similar to inhibitor of apoptosis-2 IAP-2 (GI: 20043383) [Mamestra configurata nucleopolyhedrovirus] (68414.m07868) 1689 Not regulated NC-NC-NC 259990_s_at At1g68050 F-box family protein (FKF1)/adagio 3 (ADO3) E3 ubiquitin ligase SCF complex F-box subunit identical to FKF1 GI: 6960305 and Adagio 3 GI: 13487072 from [Arabidopsis thaliana]; contains Pfam profiles PF01344: Kelch motif, PF00785: PAC motif and PF00646: F-box domain; contains TIGRfam profile TIGR00229: PAS domain S-boxidentical to cDNA Adagio 3 (ADO3) GI: 13487071 (68414.m07774) 1690 Not regulated NC-NC-NC 259995_at At1g67930 Golgi transport complex protein-related similar to golgi transport complex protein (GTC90) GB: 5453670 [Homo sapiens] (stimulates in vitro Golgi transport J. Biol. Chem. 273 (45), 29565-29578 (1998)) (68414.m07757) 1691 Not regulated NC-NC-NC 260002_at At1g67940 ABC transporter family protein similar to ABC transporters: GB: BAA77876 [Escherichia coli], GB: P07655 [Escherichia coli]; contains Pfam profile: PF00005 ABC transporter (68414.m07758) 1692 Not regulated NC-NC-NC 260003_at At1g68100 IAA-alanine resistance protein 1, putative similar to IAA-alanine resistance protein 1 [Arabidopsis thaliana] SWISS-PROT: Q9M647; contains ZIP Zinc transporter domain, Pfam: PF02535; identical to cDNA IAA-alanine resistance protein 1 mRNA GI: 6942042 (68414.m07779) 1693 Not regulated NC-NC-NC 260005_at At1g67920 expressed protein (68414.m07756) 1694 Not regulated NC-NC-NC 260006_at At1g68000 CDP-diacylglycerol-inositol 3-phosphatidyltransferase/phosphatidylinositol synthase (PIS1) identical to phosphatidylinositol synthase (PIS1) GB: AJ000539 [gi: 3367632] (68414.m07768) 1695 Not regulated NC-NC-NC 260008_at At1g68070 zinc finger (C3HC4-type RING finger) family protein very low similarity to RING-H2 finger protein RHG1a [Arabidopsis thaliana] GI: 3822225; contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68414.m07776) 1696 Not regulated NC-NC-NC 260009_at At1g67950 RNA recognition motif (RRM)-containing protein (68414.m07759) 1697 Not regulated NC-NC-NC 260012_at At1g67865 expressed protein (68414.m07749) 1698 Not regulated NC-NC-NC 259964_at At1g53680 glutathione S-transferase, putative similar to GI: 2853219 from [Carica papaya] (68414.m06108) 1699 Not regulated NC-NC-NC 259965_at At1g53670 transcription factor-related similar to pilin-like transcription factor [Homo sapiens] GI: 5059062; contains Pfam profile PF01641: SeIR domain (68414.m06107) 1700 Not regulated NC-NC-NC 259978_at At1g76540 cell division control protein, putative similar to SWISS-PROT: Q38775, cell division control protein 2 homolog D [Antirrhinum majus]; contains protein kinase domain, Pfam: PF00069 (68414.m08907) 1701 Not regulated NC-NC-NC 259981_at At1g76450 oxygen-evolving complex-related SP: Q9S720; contains a PsbP domain (68414.m08891) 1702 Not regulated NC-NC-NC 259983_at At1g76490 3-hydroxy-3-methylglutaryl-CoA reductase 1/HMG-CoA reductase 1 (HMG1) identical to HMG-CoA reductase 1 [SP|P14891] (68414.m08899) 1703 Not regulated NC-NC-NC 259984_at At1g76460 RNA recognition motif (RRM)-containing protein low similarity to RRM-containing protein SEB-4 [Xenopus laevis] GI: 8895698; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (68414.m08893) 1704 Not regulated NC-NC-NC 259955_s_at At1g75080 brassinosteroid signalling positive regulator (BZR1) identical to to BZR1 protein [Arabidopsis thaliana] gi|20270971|gb|AAM18490 (68414.m08719) 1705 Not regulated NC-NC-NC 259927_at At1g75100 expressed protein low similarity to SP|O14976 Cyclin G-associated kinase (EC 2.7.1.—) {Homo sapiens} (68414.m08722) 1706 Not regulated NC-NC-NC 259933_at At1g34350 expressed protein (68414.m04264) 1707 Not regulated NC-NC-NC 259942_at At1g71260 expressed protein (68414.m08224) 1708 Not regulated NC-NC-NC 259943_at At1g71480 nuclear transport factor 2 (NTF2) family protein contains Pfam domain, PF02136: Nuclear transport factor 2 (NTF2) domain (68414.m08261) 1709 Not regulated NC-NC-NC 259948_at At1g71350 eukaryotic translation initiation factor SUI1 family protein weak similarity to SP|P41214 Ligatin (Hepatocellular carcinoma- associated antigen 56) {Homo sapiens}; contains Pfam profile PF01253: Translation initiation factor SUI1 (68414.m08235) 1710 Not regulated NC-NC-NC 259950_at At1g71410 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68414.m08247) 1711 Not regulated NC-NC-NC 259952_at At1g71400 disease resistance family protein/LRR family protein contains leucine rich-repeat domains Pfam: PF00560, INTERPRO: IPR001611; similar to Hcr2-5D [Lycopersicon esculentum] gi|3894393|gb|AAC78596 (68414.m08246) 1712 Not regulated NC-NC-NC 259894_at At1g71430 expressed protein (68414.m08251) 1713 Not regulated NC-NC-NC 259909_at At1g60870 expressed protein (68414.m06852) 1714 Not regulated NC-NC-NC 259910_at At1g72700 haloacid dehalogenase-like hydrolase family protein similar to Potential phospholipid-transporting ATPase (EC 3.6.3.1) from Homo sapiens [SP|Q9Y2Q0, SP|O43520]: contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase (68414.m08407) 1715 Not regulated NC-NC-NC 259920_at At1g72550 tRNA synthetase beta subunit family protein contains Pfam profiles: PF03484 phenylalanine-tRNA synthetase, B5 domain, PF03483 B3/4 domain; an isoform contains a non-consensus TG acceptor splice site at a terminal exon. (68414.m08389) 1716 Not regulated NC-NC-NC 259922_at At1g72770 protein phosphatase 2C P2C-HA/PP2C P2C-HA (P2C-HA) identical to protein phosphatase 2C (AtP2C-HA) GB: AJ003119 [Arabidopsis thaliana] (Plant Mol. Biol. 38 (5), 879-883 (1998)) (68414.m08414) 1717 Not regulated NC-NC-NC 259924_at At1g72740 DNA-binding family protein/histone H1/H5 family protein similar to DNA-binding protein PcMYB1 [Petroselinum crispum] GI: 2224897; contains Pfam profiles PF00538: linker histone H1 and H5 family, PF00249: Myb-like DNA-binding domain (68414.m08411) 1718 Not regulated NC-NC-NC 259863_at At1g72630 expressed protein (68414.m08398) 1719 Not regulated NC-NC-NC 259868_at At1g76760 thioredoxin family protein similar to thioredoxin CH2, M-type, chloroplast precursor GB: P23400 SP|P23400 [Chlamydomonas reinhardtii]; contains Pfam profile PF00085 Thioredoxin (68414.m08933) 1720 Not regulated NC-NC-NC 259880_at At1g76730 5-formyltetrahydrofolate cyclo-ligase family protein contains Pfam profile PF01812 5-formyltetrahydrofolate cyclo-ligase (68414.m08930) 1721 Not regulated NC-NC-NC 259887_at At1g76360 protein kinase, putative similar to protein kinase APK1B, SWISS-PROT: P46573; contains protein kinase domain, Pfam: PF00069 (68414.m08872) 1722 Not regulated NC-NC-NC 259856_at At1g68440 expressed protein (68414.m07818) 1723 Not regulated NC-NC-NC 259860_at At1g80640 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68414.m09463) 1724 Not regulated NC-NC-NC 259861_at At1g80615 1725 Not regulated NC-NC-NC 259838_at At1g52220 expressed protein (68414.m05892) 1726 Not regulated NC-NC-NC 259840_at At1g52230 photosystem I reaction center subunit VI, chloroplast, putative/PSI-H, putative (PSAH2) identical to SP|Q9SUI6; similar to PSI-H precursor [Nicotiana sylvestris] GI: 407355; contains Pfam profile PF03244: Photosystem I reaction centre subunit VI (68414.m05893) 1727 Not regulated NC-NC-NC 259841_at At1g52200 expressed protein similar to PGPS/D12 [Petunia x hybrida] GI: 4105794; contains Pfam profile PF04749: Protein of unknown function, DUF614 (68414.m05890) 1728 Not regulated NC-NC-NC 259847_at At1g72170 expressed protein contains Pfam PF04418: Domain of unknown function (DUF543) (68414.m08344) 1729 Not regulated NC-NC-NC 259848_at At1g72180 leucine-rich repeat transmembrane protein kinase, putative similar to GI: 3641252 from [Malus x domestica] (Plant Mol. Biol. 40 (6), 945-957 (1999)) (68414.m08346) 1730 Not regulated NC-NC-NC 259849_at At1g72190 oxidoreductase family protein similar to D-3-phosphoglycerate dehydrogenase from Arabidopsis thaliana [SP|O04130], glyoxylate reductase from Homo sapiens (gi: 6002730); contains Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF02826 (68414.m08347) 1731 Not regulated NC-NC-NC 259853_at At1g72300 leucine-rich repeat transmembrane protein kinase, putative similar to GI: 3641252 from [Malus x domestica] (Plant Mol. Biol. 40 (6), 945-957 (1999)) (68414.m08358) 1732 Not regulated NC-NC-NC 259804_at At1g72160 SEC14 cytosolic factor family protein/phosphoglyceride transfer family protein similar to GI: 807956 from [Saccharomyces cerevisiae] similar to polyphosphoinositide binding protein Ssh2p (GI: 2739046) {Glycine max}; contains Pfam PF00650: CRAL/TRIO domain; contains Pfam PF03765: CRAL/TRIO, N-terminus (68414.m08343) 1733 Not regulated NC-NC-NC 259816_at At1g49850 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68414.m05589) 1734 Not regulated NC-NC-NC 259819_at At1g49820 5-methylthioribose kinase family contains TIGRfam TIGR01767: 5-methylthioribose kinase profile (68414.m05586) 1735 Not regulated NC-NC-NC 259824_at At1g66240 copper homeostasis factor, putative/copper chaperone, putative (CCH) similar to gi: 3168840 contains Pfam profile PF00403: Heavy-metal-associated domain (68414.m07519) 1736 Not regulated NC-NC-NC 259825_at At1g66260 RNA and export factor-binding protein, putative similar to GI: 7159943 from [Mus musculus] (RNA 6 (4), 638-650 (2000)) (68414.m07522) 1737 Not regulated NC-NC-NC 259826_at At1g29340 armadillo/beta-catenin repeat family protein/U-box domain-containing protein contains Pfam domain, PF00514: Armadillo/beta- catenin-like repeats and Pfam, PF04564: U-box domain (68414.m03587) 1738 Not regulated NC-NC-NC 259767_s_at At1g29350 expressed protein (68414.m03588) 1739 Not regulated NC-NC-NC 259769_at At1g29400 RNA recognition motif (RRM)-containing protein similar to GI: 6650523 from [Arabidopsis thaliana] (68414.m03596) 1740 Not regulated NC-NC-NC 259770_s_at At1g29410 phosphoribosylanthranilate isomerase, putative strong similarity to GI: 619749 from [Arabidopsis thaliana] (Plant Cell 7 (4), 447-461 (1995)) (68414.m03598) 1741 Not regulated NC-NC-NC 259775_at At1g29530 expressed protein (68414.m03612) 1742 Not regulated NC-NC-NC 259791_at At1g29700 expressed protein (68414.m03629) 1743 Not regulated NC-NC-NC 259792_at At1g29690 expressed protein (68414.m03628) 1744 Not regulated NC-NC-NC 259765_at At1g64370 expressed protein (68414.m07295) 1745 Not regulated NC-NC-NC 259737_at At1g64400 long-chain-fatty-acid-CoA ligase. putative/long-chain acyl-CoA synthetase, putative similar to GI: 1617270 (MF7P) from [Brassica napus] (68414.m07299) 1746 Not regulated NC-NC-NC 259738_at At1g64355 expressed protein (68414.m07293) 1747 Not regulated NC-NC-NC 259741_at At1g71020 armadillo/beta-caterin repeat family protein/U-box domain-containing protein contains Pfam domain, PF00514: Armadillo/beta- caterin-like repeats and Pfam, PF04564: U-box domain (68414.m08197) 1748 Not regulated NC-NC-NC 259745_at At1g71190 expressed protein (68414.m08214) 1749 Not regulated NC-NC-NC 259752_at At1g71040 multi-copper oxidase type I family protein similar to SP|P07788 Spore coat protein A {Bacillus subtilis}; contains Pfam profile PF00394: Multicopper oxidase (68414.m08199) 1750 Not regulated NC-NC-NC 259754_at At1g71090 auxin efflux carrier family protein contains auxin efflux carrier domain, Pfam: PF03547 (68414.m08204) 1751 Not regulated NC-NC-NC 259756_at At1g71080 expressed protein (68414.m08203) 1752 Not regulated NC-NC-NC 259761_at At1g77590 long-chain-fatty-acid-CoA ligase family protein/long-chain acyl-CoA synthetase family protein (LACS9) similar to LACS 3 [SP|O95573] from Homo Sapiens, LACS 3 [SP|Q63151] from Rattus norvegicus; contains Pfam HMM hit: AMP-binding enzymes PF00501 (68414.m09034) 1753 Not regulated NC-NC-NC 259732_at At1g77470 replication factor C 36 kDA, putative similar to SWISS-PROT: P40937 activator 1 36 kDa subunit (Replication factor C 36 kDa subunit, A1 36 kDa subunit, RF-C 36 kDa subunit, RFC36) [Homo sapiens] (68414.m09021) 1754 Not regulated NC-NC-NC 259707_at At1g77490 L-ascorbate peroxidase, thylakoid-bound (tAPX) identical to thylakoid-bound ascorbate peroxidase GB: CAA67428 [Arabidopsis thaliana] (68414.m09024) 1755 Not regulated NC-NC-NC 259710_at At1g77670 aminotransferase class I and II family protein similar to kynurenine aminotransferase/glutamine transaminase K GI: 1030066 [Rattus norvegicus] (68414.m09043) 1756 Not regulated NC-NC-NC 259712_at At1g77440 20S proteasome beta subunit C (PBC2) identical to residues 14-204 of 20S proteasome beta subunit PBC2 GB: AAC32069 [Arabidopsis thaliana] (68414.m09018) 1757 Not regulated NC-NC-NC 259717_at At1g61010 cleavage and polyadenylation specificity factor, putative similar to cleavage and polyadenylation specificity factor 73 kDa subunit [Homo sapiens] SWISS-PROT: Q9UKF6 (68414.m06869) 1758 Not regulated NC-NC-NC 259723_at At1g60960 metal transporter, putative (IRT3) identical to putative metal transporter IRT3 [Arabidopsis thaliana] gi|17385796|gb|AAL38438; similar to iron-regulated transporter 1 [Lycopersicon esculentum] gi|9716481|gb|AAF97509; member of the Zinc (Zn2+)-iron (Fe2+) permease (ZIP) family, PMID: 11500563 (68414.m06862) 1759 Not regulated NC-NC-NC 259724_at At1g60940 serine/threonine protein kinase, putative similar to serine/threonine-protein kinase ASK1 from [Arabidopsis thaliana] SWISS- PROT: P43291 (68414.m06859) 1760 Not regulated NC-NC-NC 259727_at At1g60950 ferredoxin, chloroplast (PETF) identical to FERREDOXIN PRECURSOR GB: P16972 [SP|P16972] from [Arabidopsis thaliana] (68414.m06861) 1761 Not regulated NC-NC-NC 259678_at At1g77750 30S ribosomal protein S13, chloroplast, putative similar to putative 30S ribosomal protein S13, chloroplast precursor GB: P42732 [Arabidopsis thaliana] (68414.m09052) 1762 Not regulated NC-NC-NC 259685_at At1g63090 F-box family protein/SKP1 interacting partner 3-related contains Pfam profile PF00846: F-box domain (68414.m07127) 1763 Not regulated NC-NC-NC 259687_at At1g63110 cell division cycle protein-related contains 9 transmembrane domains; similar to PIG-U (GI: 27372215) [Rattus norvegicus]; similar to Cell division cycle protein 91-like 1 (CDC91-like 1 protein) (PIG-U) (Swiss-Prot: Q9H490) [Homo sapiens] (68414.m07130) 1764 Not regulated NC-NC-NC 259688_at At1g63120 rhomboid family protein contains PFAM domain PF01694, Rhomboid family (68414.m07133) 1765 Not regulated NC-NC-NC 259695_at At1g63170 zinc finger (C3HC4-type RING finger) family protein low similarity to SP|Q06003 Goliath protein (G1 protein) {Drosophila melanogaster}; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) (68414.m07139) 1766 Not regulated NC-NC-NC 259697_at At1g68920 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain (68414.m07887) 1767 Not regulated NC-NC-NC 259642_at At1g69030 BSD domain-containing protein contains Pfam profile PF03909: BSD domain (68414.m07898) 1768 Not regulated NC-NC-NC 259645_at At1g69010 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain (68414.m07896) 1769 Not regulated NC-NC-NC 259653_at At1g55240 expressed protein contains Pfam profile PF04819: Family of unknown function (DUF716) (Plant viral-response family) (68414.m06309) 1770 Not regulated NC-NC-NC 259660_at At1g55260 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 (68414.m06312) 1771 Not regulated NC-NC-NC 259661_at At1g55265 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538 (68414.m06313) 1772 Not regulated NC-NC-NC 259663_at At1g55190 prenylated rab acceptor (PRA1) family protein contains Pfam profile PF03208: Prenylated rab acceptor (PRA1) (68414.m06304) 1773 Not regulated NC-NC-NC 259665_at At1g55160 expressed protein (68414.m06299) 1774 Not regulated NC-NC-NC 259666_at At1g55310 SC35-like splicing factor, 33 kD (SCL33) nearly identical to SC35-like splicing factor SCL33, 33 kD [Arabidopsis thaliana] GI: 9843659 (68414.m06318) 1775 Not regulated NC-NC-NC 259671_at At1g52290 protein kinase family protein contains Pfam PF00069: Protein kinase domain (68414.m05900) 1776 Not regulated NC-NC-NC 259638_at At1g52360 coatomer protein complex, subunit beta 2 (beta prime), putative contains 7 WD-40 repeats (PF00400) (1 weak); similar to (SP: O55029) Coatomer beta' subunit (Beta′-coat protein) (Beta′-COP) (p102) (SP: O55029) [Mus musculus]; similar to GI: 298096 from [Homo sapiens] (68414.m05909) 1777 Not regulated NC-NC-NC 259639_at At1g52380 Ran-binding protein 1 domain-containing protein/RanBP1 domain-containing protein weak similarity to SP|Q09717 Ran-specific GTPase-activating protein 1 (Ran binding protein 1) (RANBP1) (Spi1-binding protein) {Schizosaccharomyces pombe}; contains Pfam profile PF00638: RanBP1 domain (68414.m05911) 1778 Not regulated NC-NC-NC 259610_at At1g52320 expressed protein contains Pfam profile: PF04782 protein of unknown function (DUF632) (68414.m05904) 1779 Not regulated NC-NC-NC 259626_at At1g42990 bZIP transcription factor family protein contains Pfam profile: PF00170: bZIP transcription factor (68414.m04949) 1780 Not regulated NC-NC-NC 259627_at At1g42960 expressed protein (68414.m04946) 1781 Not regulated NC-NC-NC 259633_at At1g56505 1782 Not regulated NC-NC-NC 259603_at At1g56500 haloacid dehalogenase-like hydrolase family protein low similarity to SP|P95649 CbbY protein {Rhodobacter sphaeroides}; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase (68414.m06497) 1783 Not regulated NC-NC-NC 259604_at At1g56450 20S proteasome beta subunit G1 (PBG1) (PRCH) identical to 20S proteasome beta subunit (PBG1) GI: 3421123 [Arabidopsis thaliana]; identical to cDNA proteasome subunit prch GI: 2511597 (68414.m06492) 1784 Not regulated NC-NC-NC 259582_at At1g28060 small nuclear ribonucleoprotein family protein/snRNP family protein contains similarity to U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo sapiens] gi|2708307|gb|AAC51926 (68414.m03435) 1785 Not regulated NC-NC-NC 259586_at At1g28100 expressed protein (68414.m03440) 1786 Not regulated NC-NC-NC 259587_at At1g28120 expressed protein (68414.m03445) 1787 Not regulated NC-NC-NC 259592_at At1g27950 lipid transfer protein-related low similarity to lipid transfer protein Picea abies GI: 2627141; contains Pfam profile: PF00234: Protease inhibitor/seed storage/LTP family (68414.m03424) 1788 Not regulated NC-NC-NC 259593_at At1g27970 nuclear transport factor 2 (NTF2), putative similar to Swiss-Prot: P33331 nuclear transport factor 2 (NTF-2) (Nuclear transport factor P10) [Saccharomyces cerevisiae] (68414.m03426) 1789 Not regulated NC-NC-NC 259594_at At1g28140 expressed protein contains similarity to cytochrome oxidase I GI: 1289267 from (Xantholinus sp.) (68414.m03452) 1790 Not regulated NC-NC-NC 259596_at At1g28130 auxin-responsive GH3 family protein similar to auxin-responsive GH3 product [Glycine max] GI: 18591; contains Pfam profile PF03321: GH3 auxin-responsive promoter (68414.m03446) 1791 Not regulated NC-NC-NC 259598_at At1g27980 pyridoxal-dependent decarboxylase family protein similar to sphingosine-1-phosphate lyase [Homo sapiens] GI: 10129683; contains Pfam profile PF00282: Pyridoxal-dependent decarboxylase conserved domain (68414.m03427) 1792 Not regulated NC-NC-NC 259546_at At1g35350 EXS family protein/ERD1/XPR1/SYG1 family protein similar to PHO1 protein [Arabidopsis thaliana] GI: 20069032; contains Pfam profiles PF03105: SPX domain, PF03124: EXS family (68414.m04383) 1793 Not regulated NC-NC-NC 259548_at At1g35260 Bet v I allergen family protein similar to Csf-2 [Cucumis sativus][GI: 5762258][J Am Soc Hortic Sci 124, 136-139 (1999)] contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family (68414.m04372) 1794 Not regulated NC-NC-NC 259564_at At1g20540 transducin family protein/WD-40 repeat family protein contains 6 WD-40 repeats (PF00400); similar to Rbap46 polypeptide (GI: 9454362) [Gallus gallus] (68414.m02559) 1795 Not regulated NC-NC-NC 259571_at At1g20410 expressed protein (68414.m02545) 1796 Not regulated NC-NC-NC 259541_at At1g20650 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain (68414.m02587) 1797 Not regulated NC-NC-NC 259542_at At1g20575 dolichyl-phosphate beta-D-mannosyltransferase, putative/dolichol-phosphate mannosyltransferase, putative/mannose-P-dolichol synthase, putative similar to DPM1 from Homo sapiens [SP|O60762]; member of glycosyltransferase family 2 (68414.m02567) 1798 Not regulated NC-NC-NC 259543_at At1g20580 small nuclear ribonucleoprotein, putative/snRNP, putative/Sm protein, putative similar to small nuclear ribonucleoprotein Sm D3 (snRNP core protein D3, Sm-D3) [Mus musculus] SWISS-PROT: P43331 (68414.m02569) 1799 Not regulated NC-NC-NC 259544_at At1g20620 catalase 3 (SEN2) almost identical to catalase 3 SP: Q42547, GI: 3123188 from [Arabidopsis thaliana]; identical to catalase 3 (SEN2) mRNA, partial cds GI: 3158369 (68414.m02577) 1800 Not regulated NC-NC-NC 259515_at At1g20430 expressed protein (68414.m02546) 1801 Not regulated NC-NC-NC 259519_at At1g12270 stress-inducible protein, putative similar to sti (stress inducible protein) [Glycine max] GI: 872116; contains Pfam profile PF00515 TPR Domain (68414.m01419) 1802 Not regulated NC-NC-NC 259521_at At1g12410 ATP-dependent Clp protease proteolytic subunit (ClpP2) identical to nClpP2 GI: 5360589 from [Arabidopsis thaliana] (68414.m01434) 1803 Not regulated NC-NC-NC 259532_at At1g12470 Pep3/Vps18/deep orange family protein contains Pfam profile PF05131: Pep3/Vps18/deep orange family; similar to Vacuolar protein sorting 18 (hVPS18) (SP: Q9P253) {Homo sapiens} (68414.m01441) 1804 Not regulated NC-NC-NC 259533_at At1g12530 hypothetical protein; expression supported by MPSS (68414.m01451) 1805 Not regulated NC-NC-NC 259538_at At1g12310 calmodulin, putative similar to calmodulin SP: P04465 from [Trypanosoma brucei gambiense] (68414.m01423) 1806 Not regulated NC-NC-NC 259511_at At1g12520 superoxide dismutase copper chaperone, putative similar to copper chaperone for superoxide dismutase [Homo sapiens] gi|2431868|gb|AAC51764 (68414.m01449) 1807 Not regulated NC-NC-NC 259513_at At1g12430 armadillo/beta-catenin repeat family protein/kinesin motor family protein (68414.m01436) 1808 Not regulated NC-NC-NC 259484_at At1g12580 protein kinase family protein contains protein kinase domain, Pfam: PF00069; contains similarity to calcium-dependent protein kinase GI: 5162877 from [Marchantia polymorpha] (68414.m01461) 1809 Not regulated NC-NC-NC 259497_at At1g15860 expressed protein (68414.m01903) 1810 Not regulated NC-NC-NC 259498_at At1g15880 Golgi SNARE 11 protein identical to Golgi SNARE 11 protein (GI: 13898893) {Arabidopsis thaliana}; similar to putative cis-Golgi SNARE protein GI: 2583133 from [Arabidopsis thaliana]; similar to SP|O95249|28 kDa Golgi SNARE protein (28 kDa cis-Golgi SNARE p28) (GOS-28). [Homo sapiens]; similar to Golgi SNARE protein (Golgi SNAP receptor complex member 1) (28 kDa cis- Golgi SNARE p28) (GOS-28) (SP: Q62931) {Rattus norvegicus} (68414.m01905) 1811 Not regulated NC-NC-NC 259499_at At1g15730 PRLI-interacting factor L, putative strong similarity to PRLI-interacting factor L GI: 11139268 from [Arabidopsis thaliana]; contains Pfam profile PF02492: Cobalamin synthesis protein/P47K (68414.m01887) 1812 Not regulated NC-NC-NC 259500_at At1g15740 leucine-rich repeat family protein (68414.m01888) 1813 Not regulated NC-NC-NC 259501_at At1g15750 WD-40 repeat family protein contains 10 WD-40 repeats (PF00400) (1 weak) (68414.m01889) 1814 Not regulated NC-NC-NC 259502_at At1g15670 kelch repeat-containing F-box family protein similar to SP|Q9ER30 Kelch-related protein 1 (Sarcosin) {Rattus norvegicus}; contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain (68414.m01881) 1815 Not regulated NC-NC-NC 259505_at At1g15810 ribosomal protein S15 family protein contains similarity to ribosomal protein S15 (68414.m01897) 1816 Not regulated NC-NC-NC 259506_at At1g43900 protein phosphatase 2C, putative/PP2C, putative similar to protein phosphatase type 2C GI: 4336436 from [Lotus japonicus] (68414.m05065) 1817 Not regulated NC-NC-NC 259460_at At1g44000 expressed protein (68414.m05076) 1818 Not regulated NC-NC-NC 259468_at At1g19080 expressed protein (68414.m02374) 1819 Not regulated NC-NC-NC 259470_at At1g19110 inter-alpha-trypsin inhibitor heavy chain-related similar to SP|Q61704 inter-alpha-trypsin inhibitor heavy chain H3 precursor {Mus musculus}; contains Pfam profile PF00092: von Willebrand factor type A domain (68414.m02377) 1820 Not regulated NC-NC-NC 259474_at At1g19130 expressed protein (68414.m02379) 1821 Not regulated NC-NC-NC 259475_at At1g19140 expressed protein (68414.m02380) 1822 Not regulated NC-NC-NC 259476_at At1g19000 myb family transcription factor similar to MybSt1 GI: 7705206 from [Solanum tuberosum] (68414.m02363) 1823 Not regulated NC-NC-NC 259477_at At1g19120 small nuclear ribonucleoprotein, putative/snRNP, putative/Sm protein, putative similar to U6 snRNA-associated Sm-like protein LSm1 (Small nuclear ribonuclear CaSm, Cancer-associated Sm-like) [Homo sapiens] SWISS-PROT: O15116 (68414.m02378) 1824 Not regulated NC-NC-NC 259480_at At1g19010 expressed protein (68414.m02365) 1825 Not regulated NC-NC-NC 259450_at At1g13870 expressed protein similar to KTI12 protein (SP: P34253) {Saccharomyces cerevisiae}; contains Prosite PS00070: Aldehyde dehydrogenases cysteine active site (68414.m01628) 1826 Not regulated NC-NC-NC 259420_at At1g13900 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase (68414.m01631) 1827 Not regulated NC-NC-NC 259423_at At1g13880 ELM2 domain-containing protein contains Pfam profile: PF01448 ELM2 domain (68414.m01629) 1828 Not regulated NC-NC-NC 259424_at At1g13830 beta-1,3-glucanase-related similar to beta-1,3-glucanase-like protein (GI: 14279169) [Olea europaea] similar to Glucan endo-1,3- beta-glucosidase precursor (EC 3.2.1.39) ((1-3)-beta-glucan endohydrolase) ((1-3)-beta-glucanase) (Beta-1,3-endoglucanase) (Swiss-Prot: P52409) [Triticum aestivum] (68414.m01623) 1829 Not regulated NC-NC-NC 259436_at At1g01500 expressed protein identical to cDNA unknown protein GI: 1922247 embY10087.1 (68414.m00066) 1830 Not regulated NC-NC-NC 259437_at At1g01540 protein kinase family protein contains protein kinase domain, Pfam: PF00069; contains serine/threonine protein kinase domain, INTERPRO: IPR002290 (68414.m00070) 1831 Not regulated NC-NC-NC 259440_at At1g01550 expressed protein (68414.m00072) 1832 Not regulated NC-NC-NC 259443_at At1g02360 chitinase, putative similar to chitinase precursor GI: 5880845 from [Petroselinum crispum] (68414.m00182) 1833 Not regulated NC-NC-NC 259446_at At1g02410 cytochrome c oxidase assembly protein CtaG/Cox11 family similar to cytochrome c oxidase assembly protein cox11 GI: 1244782 from [Saccharomyces cerevisiae]; similar to Cytochrome c oxidase assembly protein COX11, mitochondrial precursor (SP: Q9Y6N1){Homo sapiens}; contains Pfam PF04442: Cytochrome c oxidase assembly protein CtaG/Cox11 (68414.m00188) 1834 Not regulated NC-NC-NC 259415_at At1g02330 expressed protein contains similarity to hepatocellular carcinoma-associated antigen 59 GI: 7158847 from [Homo sapiens] (68414.m00178) 1835 Not regulated NC-NC-NC 259416_at At1g02305 cathepsin B-like cysteine protease, putative similar to cathepsin B-like cysteine proteinase [Nicotiana rustica] GI: 609175; contains Pfam profile PF00112: Papain family cysteine protease (68414.m00175) 1836 Not regulated NC-NC-NC 259393_at At1g06410 glycosyl transferase family 20 protein/trehalose-phosphatase family protein contains Pfam profile: PF02358 trehalose- phosphatase (68414.m00678) 1837 Not regulated NC-NC-NC 259395_at At1g06400 Ras-related GTP-binding protein (ARA-2) identical to Ras-related protein ARA-2 SP: P28185 from [Arabidopsis thaliana] (68414.m00677) 1838 Not regulated NC-NC-NC 259396_at At1g06390 shaggy-related protein kinase iota/ASK-iota (ASK9) (GSK1) identical to shaggy-related protein kinase iota (ASK-iota) [Arabidopsis thaliana] SWISS-PROT: Q39012 (68414.m00675) 1839 Not regulated NC-NC-NC 259403_at At1g17745 D-3-phosphoglycerate dehydrogenase/3-PGDH identical to SP|O04130 (68414.m02196) 1840 Not regulated NC-NC-NC 259406_at At1g17690 expressed protein (68414.m02190) 1841 Not regulated NC-NC-NC 259407_at At1g13320 serine/threonine protein phosphatase 2A (PP2A) 65 kDa regulatory subunit, putative similar to protein phosphatase 2A 65 kDa regulatory subunit GI: 683502 from [Arabidopsis thaliana] (68414.m01546) 1842 Not regulated NC-NC-NC 259408_at At3g25800 serine/threonine protein phosphatase 2A (PP2A) 65 kDa regulatory subunit A identical to protein phosphatase 2A 65 kDa regulatory subunit (pDF1) GI: 683502 from [Arabidopsis thaliana] (68416.m03211) 1843 Not regulated NC-NC-NC 259357_at At1g13380 expressed protein (68414.m01556) 1844 Not regulated NC-NC-NC 259361_at At1g13440 glyceraldehyde 3-phosphate dehydrogenase, cytosolic, putative/NAD-dependent glyceraldehyde-3-phosphate dehydrogenase, putative very strong similarity to SP|P25858 Glyceraldehyde 3-phosphate dehydrogenase, cytosolic (EC 1.2.1.12) {Arabidopsis thaliana}; contains Pfam profiles PF02800: Glyceraldehyde 3-phosphate dehydrogenase C-terminal domain, PF00044: Glyceraldehyde 3-phosphate dehydrogenase NAD binding domain (68414.m01570) 1845 Not regulated NC-NC-NC 259363_at At1g13270 metallopeptidase M24 family protein similar to SP|Q01662 Methionine aminopeptidase 1 precursor (EC 3.4.11.18) {Saccharomyces cerevisiae}; contains Pfam profile PF00557: metallopeptidase family M24 (68414.m01540) 1846 Not regulated NC-NC-NC 259364_at At1g13260 DNA-binding protein RAV1 (RAV1) identical to SP|Q9ZWM9 DNA-binding protein RAV1 {Arabidopsis thaliana}, RAV1 GI: 3868857 from [Arabidopsis thaliana] (68414.m01539) 1847 Not regulated NC-NC-NC 259367_at At1g69070 expressed protein (68414.m07903) 1848 Not regulated NC-NC-NC 259373_at At1g69160 expressed protein (68414.m07912) 1849 Not regulated NC-NC-NC 259378_at At3g16310 mitotic phosphoprotein N′ end (MPPN) family protein contains Pfam profile PF05172: MPPN (Mitotic PhosphoProtein N′ end) (mm- like) domain (68416.m02059) 1850 Not regulated NC-NC-NC 259380_at At3g16340 ABC transporter family protein similar to PDR5-like ABC transporter GI: 1514643 from [Spirodela polyrhiza]; contains Pfam profile: PF00005 ABC transporter (68416.m02066) 1851 Not regulated NC-NC-NC 259384_at At3g16450 jacalin lectin family protein similar to SP|Q9SAV1 Myrosinase binding protein-like At1g52030 {Arabidopsis thaliana}; contains Pfam profile: PF01419 jacalin-like lectin domain (68416.m02093) 1852 Not regulated NC-NC-NC 259326_at At3g16480 mitochondrial processing peptidase alpha subunit, putative similar to mitochondrial processing peptidase alpha subunit, mitochondrial precursor, Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II) [Potato] SWISS-PROT: P29677 (68416.m02103) 1853 Not regulated NC-NC-NC 259330_at At3g16270 expressed protein gene model (68416.m02053) 1854 Not regulated NC-NC-NC 259337_at At3g03720 amino acid permease family protein similar to cationic amino acid transporter-1 [Rattus norvegicus] GI: 1589917; contains Pfam profile PF00324: Amino acid permease (68416.m00377) 1855 Not regulated NC-NC-NC 259339_at At3g03900 adenylylsulfate kinase, putative similar to adenylylsulfate kinase 1, chloroplast precursor (APS kinase, Adenosine-5′phosphosulfate kinase, ATP adenosine-5′-phosphosulfate 3′-phosphotransferase) [Arabidopsis thaliana] SWISS-PROT: Q43295 (68416.m00404) 1856 Not regulated NC-NC-NC 259342_at At3g03890 expressed protein (68416.m00402) 1857 Not regulated NC-NC-NC 259349_at At3g03860 expressed protein (68416.m00398) 1858 Not regulated NC-NC-NC 259356_at At3g05250 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68416.m00573) 1859 Not regulated NC-NC-NC 259323_at At3g05280 integral membrane Yip1 family protein contains Pfam domain, PF04893: Yip1 domain (68416.m00576) 1860 Not regulated NC-NC-NC 259296_at At3g05350 aminopeptidase P, cytosolic, putative similar to cytosolic aminopeptidase P from [Homo sapiens] GI: 8489879, [Rattus norvegicus] GI: 2760920; contains Pfam profile PF00557: metallopeptidase family M24 (68416.m00583) 1861 Not regulated NC-NC-NC 259304_at At3g05210 nucleotide repair protein, putative similar to nucleotide repair protein [Lilium longiflorum] GI: 3297891, SP|P07992 DNA excision repair protein ERCC-1 {Homo sapiens}; contains Pfam profile PF00633: Helix-hairpin-helix motif (68416.m00568) 1862 Not regulated NC-NC-NC 259305_at At3g05070 expressed protein (68416.m00550) 1863 Not regulated NC-NC-NC 259307_at At3g05230 signal peptidase subunit family protein contains Pfam profile: PF04573 signal peptidase subunit (68416.m00571) 1864 Not regulated NC-NC-NC 259308_at At3g05180 GDSL-motif lipase/hydrolase family protein similar to early nodulin ENOD8 [Medicago sativa] GI: 304037, elicitor-induced glycoprotein iEP4 [Daucus carota] GI: 1911765, lanatoside 15′-O-acetylesterase [Digitalis lanata] GI: 3688284; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family (68416.m00565) 1865 Not regulated NC-NC-NC 259309_at At3g05050 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain (68416.m00548) 1866 Not regulated NC-NC-NC 259310_s_at At3g05165 sugar transporter, putative similar to sugar-porter family proteins 1 and 2 [Arabidopsis thaliana] GI: 14585699, GI: 14585701; contains Pfam profile PF00083: major facilitator superfamily protein (68416.m00562) 1867 Not regulated NC-NC-NC 259311_at At3g05060 SAR DNA-binding protein, putative strong similarity to SAR DNA-binding protein-1 [Pisum sativum] GI: 3132696; contains Pfam profile PF01798: Putative snoRNA binding domain (68416.m00549) 1868 Not regulated NC-NC-NC 259313_at At3g05090 transducin family protein/WD-40 repeat family protein contains seven G-protein beta WD-40 repeats; similar to uncharacterized KIAA1449 protein (gi: 7959157) [Homo sapiens] (68416.m00552) 1869 Not regulated NC-NC-NC 259315_at At3g01200 expressed protein contains Pfam domain PF03618: Domain of unknown function (DUF299) (68416.m00026) 1870 Not regulated NC-NC-NC 259319_at At3g01090 Snf1-related protein kinase (KIN10) (SKIN10) identical to Snf1-related protein kinase, KIN10 SP: Q38997 from [Arabidopsis thaliana] (68416.m00013) 1871 Not regulated NC-NC-NC 259267_at At3g01130 expressed protein (68416.m00017) 1872 Not regulated NC-NC-NC 259270_at At3g01280 porin, putative similar to SP|P42055 34 kDa outer mitochondrial membrane protein porin (Voltage-dependent anion-selective channel protein) (VDAC) {Solanum tuberosum}; contains Pfam profile PF01459: Eukaryotic porin (68416.m00035) 1873 Not regulated NC-NC-NC 259275_at At3g01060 expressed protein (68416.m00007) 1874 Not regulated NC-NC-NC 259280_at At3g01150 polypyrimidine tract-binding protein, putative/heterogeneous nuclear ribonucleoprotein, putative similar to Polypyrimidine tract- binding protein 1 (PTB) (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) from {Sus scrofa} SP|Q29099, {Mus musculus} SP|P17225; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68416.m00019) 1875 Not regulated NC-NC-NC 259284_at At3g11450 DNAJ heat shock N-terminal domain-containing protein/cell division protein-related similar to GlsA [Volvox carteri f. nagariensis] GI: 4633129; contains Pfam profiles PF00226 DnaJ domain, PF00249 Myb-like DNA-binding domain (68416.m01396) 1876 Not regulated NC-NC-NC 259288_at At3g11500 small nuclear ribonucleoprotein G, putative/snRNP-G, putative/Sm protein G, putative similar to SWISS-PROT: Q15357 small nuclear ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG) [Homo sapiens] (68416.m01402) 1877 Not regulated NC-NC-NC 259291_at At3g11550 integral membrane family protein similar to unknown protein GB: AAD26967 [Arabidopsis thaliana]; contains TIGRFAM TIGR01569: plant integral membrane protein TIGR01569; contains Pfam PF04535: Domain of unknown function (DUF588) (68416.m01409) 1878 Not regulated NC-NC-NC 259292_at At3g11560 expressed protein (68416.m01410) 1879 Not regulated NC-NC-NC 259231_at At3g11410 protein phosphatase 2C, putative/PP2C, putative identical to protein phosphatase 2C (PP2C) GB: P49598 [Arabidopsis thaliana]; contains Pfam profile PF00481: Protein phosphatase 2C; identical to cDNA protein phosphatase 2C GI: 633027 (68416.m01392) 1880 Not regulated NC-NC-NC 259235_at At3g11600 expressed protein weak similarity to B-type cyclin (GI: 849074) [Nicotiana tabacum] (68416.m01418) 1881 Not regulated NC-NC-NC 259236_at At3g11530 vacuolar protein sorting 55 family protein/VPS55 family protein contains Pfam domain PF04133: Vacuolar protein sorting 55 (68416.m01405) 1882 Not regulated NC-NC-NC 259237_at At3g11630 2-cys peroxiredoxin, chloroplast (BAS1) identical to SP|Q96291 2-cys peroxiredoxin BAS1, chloroplast precursor {Arabidopais thaliana}; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family (68416.m01425) 1883 Not regulated NC-NC-NC 259238_at At3g11400 eukaryotic translation initiation factor 3G/eIF3g nearly identical to eukaryotic translation initiation factor 3g [Arabidopsis thaliana] GI: 12407751 (68416.m01390) 1884 Not regulated NC-NC-NC 259239_at At3g11510 40S ribosomal protein S14 (RPS14B) similar to 40S ribosomal protein S14 GB: P19950 [Zea mays] (68416.m01403) 1885 Not regulated NC-NC-NC 259240_at At3g11590 expressed protein (68416.m01416) 1886 Not regulated NC-NC-NC 259243_at At3g07565 expressed protein (68416.m00904) 1887 Not regulated NC-NC-NC 259245_at At3g07660 expressed protein (68416.m00918) 1888 Not regulated NC-NC-NC 259247_at At3g07570 membrane protein, putative similar to membrane protein SDR2 (GI: 1747306) [Mus musculus] (68416.m00907) 1889 Not regulated NC-NC-NC 259248_at At3g07770 heat shock protein-related strong similarity to heat-shock protein [Secale cereale] GI: 556673; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein (68416.m00947) 1890 Not regulated NC-NC-NC 259253_at At3g07640 expressed protein (68416.m00915) 1891 Not regulated NC-NC-NC 259254_at At3g07630 prephenate dehydratase family protein similar to P-protein: chorismate mutase, prephenate dehydratase GB: P43900 [Haemophilus influenzae] (68416.m00913) 1892 Not regulated NC-NC-NC 259257_at At3g07760 expressed protein (68416.m00943) 1893 Not regulated NC-NC-NC 259258_at At3g07670 SET domain-containing protein similar to ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Spinacia oleracea] GI: 3403236; contains Pfam profile PF00856: SET domain (68416.m00919) 1894 Not regulated NC-NC-NC 259224_at At3g07800 thymidine kinase, putative similar to thymidine kinase [Oryza sativa] SWISS-PROT: O81263 (68416.m00953) 1895 Not regulated NC-NC-NC 259226_at At3g07700 ABC1 family protein contains Pfam domain, PF03109: ABC1 family (68416.m00925) 1896 Not regulated NC-NC-NC 259227_at At3g07750 3′ exoribonuclease family domain 1-containing protein similar to SP|Q15024 Exosome complex exonuclease RRP42 (EC 3.1.13.—) (Ribosomal RNA processing protein 42) {Homo sapiens}; contains Pfam profile PF01138: 3′ exoribonuclease family, domain 1 (68416.m00939) 1897 Not regulated NC-NC-NC 259207_at At3g09050 expressed protein (68416.m01064) 1898 Not regulated NC-NC-NC 259215_at At3g09090 defective in exine formation protein (DEX1) identical to defective in exine formation [Arabidopsis thaliana] gi|11138669|gb|AAG31444; contains Pfam domain PF01839: FG-GAP repeat (68416.m01069) 1899 Not regulated NC-NC-NC 259196_at At3g03600 ribosomal protein S2, mitochondrial (RPS2) identical to SP|Q9GCB9 Mitochondrial ribosomal protein S2 {Arabidopsis thaliana}; contains Pfam profile PF00318: ribosomal protein S2 (68416.m00363) 1900 Not regulated NC-NC-NC 259198_at At3g03610 phagocytosis and cell motility protein ELMO1-related contains weak similarity to ELMO1 [Mus musculus] gi|16118551|gb|AAL14464 (68416.m00364) 1901 Not regulated NC-NC-NC 259178_at At3g01650 copine-related low similarity to SP|Q99829 Copine I {Homo sapiens} (68416.m00096) 1902 Not regulated NC-NC-NC 259184_at At3g01520 universal stress protein (USP) family protein similar to ER6 protein (GI: 5669654) [Lycopersicon esculentum]; contains Pfam profile PF00582: universal stress protein family (68416.m00080) 1903 Not regulated NC-NC-NC 259185_at At3g01550 triose phosphate/phosphate translocator, putative similar to SWISS-PROT: P52178 triose phosphate/phosphate translocator [Cauliflower]{Brassica oleracea} (68416.m00085) 1904 Not regulated NC-NC-NC 259190_at At3g01780 expressed protein est hit, (68416.m00118) 1905 Not regulated NC-NC-NC 259192_at At3g01740 expressed protein (68416.m00111) 1906 Not regulated NC-NC-NC 259194_at At3g01540 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB: BAA28347 GI: 3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain (68416.m00082) 1907 Not regulated NC-NC-NC 259164_at At3g01770 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO: IPR001487 (68416.m00116) 1908 Not regulated NC-NC-NC 259137_at At3g10300 calcium-binding EF hand family protein low similarity to SP|P12815 Programmed cell death protein 6 (Probable calcium-binding protein ALG-2) {Mus musculus}; contains INTERPRO: IPR002048 calcium-binding EF-hand domain (68416.m01234) 1909 Not regulated NC-NC-NC 259138_3_at At3g10270 DNA topoisomerase, ATP-hydrolyzing, putative/DNA topoisomerase II, putative/DNA gyrase, putative similar to SP|O50627 DNA gyrase subunit 8 (EC 5.99.1.3) {Bacillus halodurans}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00204: DNA topoisomerase II (N-terminal region), PF00986: DNA gyrase, B subunit, carboxyl terminus, PF01751: Toprim domain (68416.m01231) 1910 Not regulated NC-NC-NC 259141_at At3g10220 tubulin folding cofactor B identical to tubulin folding cofactor B GI: 20514259 from [Arabidopsis thaliana]; identical to cDNA tubulin folding cofactor B GI: 20514258 (68416.m01223) 1911 Not regulated NC-NC-NC 259148_at At3g10350 anion-transporting ATPase family protein similar to SP|O43681 Arsenical pump-driving ATPase (EC 3.6.3.16) (Arsenite- translocating ATPase) (Arsenical resistance ATPase) (Arsenite-transporting ATPase) (ARSA) (ASNA-I) {Homo sapiens}; contains Pfam profile PF02374: Anion-transporting ATPase; contains non-consensus GA donor splice site at intron 5 (68416.m01241) 1912 Not regulated NC-NC-NC 259152_at At3g10210 expressed protein similar to putative protein GB: CAA20045 [Arabidopsis thaliana] (68416.m01222) 1913 Not regulated NC-NC-NC 259153_at At3g10250 expressed protein (68416.m01226) 1914 Not regulated NC-NC-NC 259154_at At3g10260 reticulon family protein weak similarity to Nogo-C protein [Rattus norvegicus] GI: 6822251; contains Pfam profile PF02453: Reticulon; identical to cDNA GI: 32331854 (68416.m01228) 1915 Not regulated NC-NC-NC 259155_at At3g10330 transcription initiation factor IIB-2/general transcription factor TFIIB-2 (TFIIB2) identical to SP|Q9SS44 Transcription initiation factor IIB-2 (General transcription factor TFIIB-2) (AtTFIIB2) {Arabidopsis thaliana} (68416.m01239) 1916 Not regulated NC-NC-NC 259111_at At3g05520 F-actin capping protein alpha subunit family protein contains Pfam profile: PF01267 F-actin capping protein alpha subunit (68416.m00605) 1917 Not regulated NC-NC-NC 259112_at At3g05560 60S ribosomal protein L22-2 (RPL22B) identical to 60S ribosomal protein L22-2 SP: Q9M9W1 from [Arabidopsis thaliana] (68416.m00613) 1918 Not regulated NC-NC-NC 259115_at At3g01360 expressed protein contains Pfam profile PF04819: Family of unknown function (DUF716) (Plant viral-response family) (68416.m00057) 1919 Not regulated NC-NC-NC 259118_at At3g01310 expressed protein similar to unknown protein GB: BAA24863 [Homo sapiens], unknown protein GB: BAA20831 [Homo sapiens], unknown protein GB: AAB42264 [Caenorhabditis elegans] (68416.m00042) 1920 Not regulated NC-NC-NC 259119_at At3g01340 protein transport protein SEC13 family protein/WD-40 repeat family protein similar to Protein transport protein SEC13 SP|Q04491 {Saccharomyces cerevisiae} and SEC13 (SP: P53024) [Pichia pastoris] (68416.m00051) 1921 Not regulated NC-NC-NC 259121_at At3g02220 expressed protein (68416.m00203) 1922 Not regulated NC-NC-NC 259123_at At3g02200 proteasome family protein contains Pfam domain, PF01399: PCI domain (68416.m00198) 1923 Not regulated NC-NC-NC 259125_at At3g02300 regulator of chromosome condensation (RCC1) family protein weak similarity to UVB-resistance protein UVR8 [Arabidopsis thaliana] GI: 5478530; contains Pfam profile PF00415: Regulator of chromosome condensation (RCC1) (68416.m00212) 1924 Not regulated NC-NC-NC 259131_at At3g02180 expressed protein (68416.m00192) 1925 Not regulated NC-NC-NC 259085_at At3g05000 transport protein particle (TRAPP) component Bet3 family protein similar to Transport protein particle 33 kDa subunit (TRAPP 33 kDa subunit) (Swiss-Prot: Q99394) [Saccharomyces cerevisiae]; contains Pfam profile PF04051: Transport protein particle (TRAPP) component, Bet3 (68416.m00543) 1926 Not regulated NC-NC-NC 259090_at At3g04920 40S ribosomal protein S24 (RPS24A) similar to ribosomal protein S19 GB: 445612 [Solanum tuberosum] and similar to ribosomal protein S24 GB: 4506703 [Homo sapiens] (68416.m00534) 1927 Not regulated NC-NC-NC 259092_at At3g04870 zeta-carotene desaturase (ZDS1)/carotene 7,8-desaturase identical to SP|Q38893 Zeta-carotene desaturase, chloroplast precursor (EC 1.14.99.30) (Carotene 7,8-desaturase) {Arabidopsis thaliana} (68416.m00528) 1928 Not regulated NC-NC-NC 259095_at At3g05020 acyl carrier protein 1, chloroplast (ACP-1) identical to SP|P11829 Acyl carrier protein 1, chloroplast precursor (ACP) {Arabidopsis thaliana} (68416.m00545) 1929 Not regulated NC-NC-NC 259096_at At3g04840 40S ribosomal protein S3A (RPS3aA) similar to 40S ribosomal protein S3A (S phase specific protein GBIS289) GB: P49396 [Brassica rapa] (68416.m00525) 1930 Not regulated NC-NC-NC 259097_at At3g04830 expressed protein (68416.m00523) 1931 Not regulated NC-NC-NC 259098_at At3g04790 ribose 5-phosphate isomerase-related similar to ribose-5-phosphate isomerase GI: 18654317 from [Spinacia oleracea] (68416.m00516) 1932 Not regulated NC-NC-NC 259099_at At3g05010 transmembrane protein, putative similar to GB: AAB61079; contains weak similarity to the SAPB protein (TR: E236624) [Arabidopsis thaliana]; similar to seven transmembrane domain orphan receptor (GI: 4321619) [Mus musculus] contains 7 transmembrane domains; (68416.m00544) 1933 Not regulated NC-NC-NC 259100_at At3g04880 DNA-damage-repair/toleration protein (DRT102) identical to DNA-damage-toleration protein DRT102 SP: Q05212 from [Arabidopsis thaliana]; contains Pfam profile: PF02502 ribose/galactose isomerase (68416.m00530) 1934 Not regulated NC-NC-NC 259102_at At3g11660 harpin-induced family protein/HIN1 family protein/harpin-responsive family protein similar to harpin-induced protein hin1 (GI: 1619321) [Nicotiana tabacum] (68416.m01429) 1935 Not regulated NC-NC-NC 259103_at At3g11690 expressed protein (68416.m01433) 1936 Not regulated NC-NC-NC 259069_at At3g11710 lysyl-tRNA synthetase, putative/lysine-tRNA ligase, putative similar to SP|Q43776 Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine- tRNA ligase) {Lycopersicon esculentum}; contains Pfam profile PF00152: tRNA synthetases class II (D, K and N) (68416.m01435) 1937 Not regulated NC-NC-NC 259047_at At3g03390 1938 Not regulated NC-NC-NC 259051_at At3g03330 short-chain dehydrogenase/reductase (SDR) family protein contains INTERPRO family IPR002198 Short-chain dehydrogenase/reductase (SDR) superfamily (68416.m00331) 1939 Not regulated NC-NC-NC 259056_at At3g03420 Ku70-binding family protein similar to Ku70-binding protein GB: AAD31085 GI: 4867999 [Homo sapiens]; contains Prosite PS00142: Neutral zinc metallopeptidases, zinc-binding region signature (68416.m00340) 1940 Not regulated NC-NC-NC 259059_at At3g07300 eukaryotic translation initiation factor 2B family protein/eIF-2B family protein similar to SP|P49770 Translation initiation factor eIF- 2B beta subunit (eIF-2B GDP-GTP exchange factor) {Homo sapiens}; contains Pfam profile PF01008: Initiation factor 2 subunit family (68416.m00869) 1941 Not regulated NC-NC-NC 259060_at At3g07400 lipase class 3 family protein contains Pfam profile PF01764: Lipase (68416.m00882) 1942 Not regulated NC-NC-NC 259068_at At3g07560 glycine-rich protein (68416.m00903) 1943 Not regulated NC-NC-NC 259012_at At3g07360 armadillo/beta-catenin repeat family protein/U-box domain-containing protein contains Pfam domain, PF00514: Armadillo/beta- catenin-like repeats and Pfam, PF04564: U-box domain (68416.m00877) 1944 Not regulated NC-NC-NC 259016_at At3g07480 expressed protein (68416.m00892) 1945 Not regulated NC-NC-NC 259017_at At3g07310 expressed protein (68416.m00871) 1946 Not regulated NC-NC-NC 259019_at At3g07370 tetratricopeptide repeat (TPR)-containing protein/U-box domain-containing protein similar to serologically defined colon cancer antigen 7 GB: 5031963 GI: 3170178 [Homo sapiens]; (68416.m00879) 1947 Not regulated NC-NC-NC 259029_at At3g09300 oxysterol-binding family protein similar to SP|P22059 Oxysterol-binding protein 1 {Homo sapiens}; contains Pfam profile PF01237: Oxysterol-binding protein (68416.m01104) 1948 Not regulated NC-NC-NC 259038_at At3g09210 KOW domain-containing transcription factor family protein: est match (68416.m01095) 1949 Not regulated NC-NC-NC 259039_at At3g09250 expressed protein (68416.m01099) 1950 Not regulated NC-NC-NC 259006_at At3g09200 60S acidic ribosomal protein P0 (RPP0B) similar to putative 60S acidic ribosomal protein P0 GB: P50346 [Glycine max] (68416.m01094) 1951 Not regulated NC-NC-NC 259007_at At3g09370 myb family transcription factor (MYB3R3) contains Pfam profile: Myb DNA-binding proteins: identical to cDNA putative c-myb-like transcription factor (MYB3R3) GI: 15375285 (68416.m01111) 1952 Not regulated NC-NC-NC 258978_at At3g09320 zinc finger (DHHC type) family protein similar to Golgi-specific DHHC zinc figer protein [Mus musculus] GI: 21728103; contains Pfam profile PF01529: DHHC zinc finger domain (68416.m01106) 1953 Not regulated NC-NC-NC 258988_at At3g08890 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538 (68416.m01034) 1954 Not regulated NC-NC-NC 258989_at At3g08920 rhodanese-like domain-containing protein contains rhodanese-like domain PF: 00581 (68416.m01038) 1955 Not regulated NC-NC-NC 258992_at At3g08930 LMBR1 integral membrane family protein contains 5 transmembrane domains; contains Pfam PF04791: LMBR1-like conserved region; similar to unknown protein GB: BAA83351 [Oryza sativa] (68416.m01039) 1956 Not regulated NC-NC-NC 258993_at At3g08940 chlorophyll A-B binding protein (LHCB4.2) contains Pfam profile: PF00504 chlorophyll A-B binding protein; identical to Lhcb4.2 protein GB: AAD28774 [Arabidopsis thaliana] (68416.m01041) 1957 Not regulated NC-NC-NC 258998_at At3g01820 adenylate kinase family protein contains Pfam profile: PF00406 adenylate kinase (68416.m00124) 1958 Not regulated NC-NC-NC 259000_at At3g01860 expressed protein (68416.m00130) 1959 Not regulated NC-NC-NC 258972_at At3g01920 yrdC family protein contains Pfam PF01300: yrdC domain; similar to Protein yciO. (Swiss-Prot: P45847) [Shigella flexnen]; similar to Chain A, Crystal Structure Of E. Coli Ycio Length (GI: 27573707) [Escherichia coli] (68416.m00141) 1960 Not regulated NC-NC-NC 258975_at At3g01970 WRKY family transcription factor similar to WRKY1 GB: AAC49527 [Petroselinum crispum] (68416.m00153) 1961 Not regulated NC-NC-NC 258977_s_at At3g02020 aspartate kinase, lysine-sensitive, putative similar to aspartate kinase gi: 2257743 (Arabidopsis thaliana) (68416.m00164) 1962 Not regulated NC-NC-NC 258948_at At3g01910 sulfite oxidase, putative similar to sulfite oxidase GB: 3212610 SP|P07850 [Gallus gallus], Moco containing protein [Oryza sativa (japonica cultivar-group)] GI: 22759584; contains Pfam profiles: PF00174: Oxidoreductase molybdopterin binding domain and PF03404: Mo-co oxidoreductase dimerisation domain (68416.m00139) 1963 Not regulated NC-NC-NC 258950_at At3g01460 PHD finger family protein/methyl-CpG binding domain-containing protein contains Pfam profiles PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG binding domain (68416.m00070) 1964 Not regulated NC-NC-NC 258954_at At3g01400 armadillo/beta-catenin repeat family protein contains Pfam profile: PF00514 armadillo/beta-catenin-like repeats (4 copies) (68416.m00063) 1965 Not regulated NC-NC-NC 258958_at At3g01390 vacuolar ATP synthase subunit G 1 (VATG1)/V-ATPase G subunit 1 (VAG1)/vacuolar proton pump G subunit 1 (VMA10) identical to SWISS-PROT: O82628 vacuolar ATP synthase subunit G 1 (V-ATPase G subunit 1, Vacuolar proton pump G subunit 1) [Arabidopsis thaliana] (68416.m00061) 1966 Not regulated NC-NC-NC 258965_at At3g10530 transducin family protein/WD-40 repeat family protein contains 2 WD-40 repeats (PF00400); BING4 (gi: 3811380) {Mus musculus}; similar to hypothetical protein GB: P40055 [Saccharomyces cerevisiae] (68416.m01264) 1967 Not regulated NC-NC-NC 258970_at At3g10410 serine carboxypeptidase III, putative similar to serine carboxypeptidase III from Oryza sativa SP|P37891, Matricaria chamomilla GI: 6960455, Hordeum vulgare SP|P21529, Triticum aestivum SP|P11515; contains Pfam profile PF0450 serine carboxypeptidase (68416.m01248) 1968 Not regulated NC-NC-NC 258918_at At3g10670 ABC transporter family protein similar to ABC transporter ATPase GB: AAC68280 [Chlamydia trachomatis] (68416.m01283) 1969 Not regulated NC-NC-NC 258919_at At3g10525 expressed protein (68416.m01263) 1970 Not regulated NC-NC-NC 258924_at At3g10620 diadenosine 5′,5′″-P1,P4-tetraphosphate hydrolase, putative similar to diadenosine 5′,5′″-P1,P4-tetraphosphate hydrolase from [Lupinus angustifolius] GI: 1888557, [Hordeum vulgare subsp. vulgare] GI: 2564253; contains Pfam profile PF00293: NUDIX domain (68416.m01277) 1971 Not regulated NC-NC-NC 258927_at At3g10160 dihydrofolate synthetase/folylpolyglutamate synthetase (DHFS/FPGS3) nearly identical to gi: 17976757 (68416.m01218) 1972 Not regulated NC-NC-NC 258929_at At3g10060 immunophilin, putative/FKBP-type peptidyl-prolyl cis-trans isomerase, putative Pfam: PF-254: FKBP-type peptidyl-prolyl cis-trans isomerases (68416.m01206) 1973 Not regulated NC-NC-NC 258938_at At3g10080 germin-like protein, putative similar to germin-like protein 2 [Oryza sativa] GI: 2655287 (68416.m01208) 1974 Not regulated NC-NC-NC 258883_at At3g09970 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 Calcineurin-like phosphoesterase (68416.m01196) 1975 Not regulated NC-NC-NC 258892_at At3g05670 PHD finger family protein contains Pfam domain, PF00628; PHD-finger (68416.m00631) 1976 Not regulated NC-NC-NC 258900_at At3g05590 60S ribosomal protein L18 (RPL18B) similar to GB: P42791 (68416.m00621) 1977 Not regulated NC-NC-NC 258902_at At3g06483 pyruvate dehydrogenase (lipoamide) kinase (PDHK) nearly identical to pyruvate dehydrogenase kinase [Arabidopsis thaliana] GI: 3641834 (68416.m00751) 1978 Not regulated NC-NC-NC 258903_at At3g06410 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) (68416.m00739) 1979 Not regulated NC-NC-NC 258905_at At3g06390 integral membrane family protein similar to hypothetical protein GB: CAB10339 [Arabidopsis thaliana]; contains TIGRFAM TIGR01569: plant integral membrane protein TIGR01569; contains Pfam PF04535: Domain of unknown function (DUF588) (68416.m00737) 1980 Not regulated NC-NC-NC 258906_at At3g06380 F-box family protein/tubby family protein similar to phosphodiesterase (GI: 487578) [Mus musculus]; similar to C-terminal half of tubby protein (A mutation in the tub gene causes maturity-onset obesity, insulin resistance, and sensory deficits) (GB: P50586) (GI: 6730158)[Mus musculus]; contains Pfam PF00646: F-box domain end Pfam PF01167: Tub family; similar to Tubby protein homolog (Swiss-Prot: O88808) [Rattus norvegicus] (68416.m00736) 1981 Not regulated NC-NC-NC 258910_at At3g06480 DEAD box RNA helicase, putative similar to RNA helicase DRH1 [Arabidopsis thaliana] GI: 3149952; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00397: WW domain (68416.m00750) 1982 Not regulated NC-NC-NC 258911_at At3g06470 GNS1/SUR4 membrane family protein similar to SP|P39540 Elongation of fatty acids protein 1 {Saccharomyces cerevisiae}; contains Pfam profile PF01151: GNS1/SUR4 family (68416.m00749) 1983 Not regulated NC-NC-NC 258913_at At3g06450 anion exchange family protein similar to putative Anion exchanger family members: GB: AAD39673, GB: AAD55295 [Arabidopsis thaliana] (68416.m00746) 1984 Not regulated NC-NC-NC 258881_at At3g06310 NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein contains Pfam profile PF05850: NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8); similar to NADH-ubiquinone oxidoreductase 19 kDa subunit (EC 1.8.5.3) (EC 1.6.99.3) (Complex I-19KD) (CI-19KD) (Complex I-PGIV) (CI-PGIV) (Swiss-Prot: P51970) [Homo sapiens] (68416.m00725) 1985 Not regulated NC-NC-NC 258882_at At3g06330 zinc finger (C3HC4-type RING finger) family protein contains InterPro Entry IPR001841 Zn-finger, RING; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) (68416.m00729) 1986 Not regulated NC-NC-NC 258855_at At3g02070 OTU-like cysteine protease family protein contains Pfam profile PF02338: OTU-like cysteine protease (68416.m00172) 1987 Not regulated NC-NC-NC 258857_at At3g02110 serine carboxypeptidase S10 family protein similar to serine carboxypeptidase II (CP-MII) GB: CAA70815 (SP: P08818) [Hordeum vulgare] (68416.m00177) 1988 Not regulated NC-NC-NC 258859_at At3g02120 hydroxyproline-rich glycoprotein family protein (68416.m00178) 1989 Not regulated NC-NC-NC 258864_at At3g03210 expressed protein (68416.m00317) 1990 Not regulated NC-NC-NC 258875_at At3g03160 expressed protein (68416.m00312) 1991 Not regulated NC-NC-NC 258876_at At3g03120 ADP-ribosylation factor, putative similar to ADP-ribosylation factor 1; ARF 1 (GP: 385340) {Drosophila melanogaster} (68416.m00308) 1992 Not regulated NC-NC-NC 258877_at At3g03220 expansin, putative (EXP13) similar to expansin precursor GB: AAD13631 from [Lycopersicon esculentum]; alpha-expansin gene family, PMID: 11641069 (68416.m00318) 1993 Not regulated NC-NC-NC 258879_at At3g03270 universal stress protein (USP) family protein/early nodulin ENOD18 family protein contains Pfam profile PF00582: universal stress protein family; similar to early nodulin ENOD18 (GI: 11602747) [Vicia faba] (68416.m00323) 1994 Not regulated NC-NC-NC 258847_at At3g03100 NADH:ubiquinone oxidoreductase family protein contains Pfam PF05071: NADH:ubiquinone oxidoreductase 17.2 kD subunit similar to ethylene-regulated ER6 protein (GI: 5669654) [Lycopersicon esculentum]; identical to Probable NADH-ubiquinone oxidoreductase subunit B17.2 (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-B17.2) (CI-B17.2) (Swiss-Prot: O9M9M9) [Arabidopsis thaliana] (68416.m00306) 1995 Not regulated NC-NC-NC 258848_at At3g03305 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase (68416.m00328) 1996 Not regulated NC-NC-NC 258850_at At3g03050 cellulose synthase family protein (CsID3) similar to cellulose synthase catalytic subunit gi: 2827143 from [Arabidopsis thaliana], cellulose synthase-7 (gi: 9622886) from Zea mays; contains Pfam profile PF03552: Cellulose synthase (68416.m00301) 1997 Not regulated NC-NC-NC 258823_at At3g07200 zinc finger (C3HC4-type RING finger) family protein contains Pfam PF00097: Zinc finger, C3HC4 type (RING finger) (68416.m00859) 1998 Not regulated NC-NC-NC 258834_at At3g07270 GTP cyclohydrolase I identical to GTP cyclohydrolase I GI: 19909132 from [Arabidopsis thaliana]; contains Pfam profile: PF01227 GTP cyclohydrolase I (68416.m00865) 1999 Not regulated NC-NC-NC 258839_at At3g07170 sterile alpha motif (SAM) domain-containing protein contains Pfam profile PF00536: SAM domain (Sterile alpha motif) (68416.m00854) 2000 Not regulated NC-NC-NC 258844_at At3g04740 expressed protein (SWP1) (68416.m00510) 2001 Not regulated NC-NC-NC 258819_at At3g04590 DNA-binding family protein contains a AT hook motif (DNA binding motifs with a preference for A/T rich regions). Pfam: PF02178 (68416.m00488) 2002 Not regulated NC-NC-NC 258820_at At3g04600 tRNA synthetase class I (W and Y) family protein contains Pfam profile: PF00579 tRNA synthetases class I (W and Y) (68416.m00490) 2003 Not regulated NC-NC-NC 258790_at At3g04610 KH domain-containing protein similar putative nucleic acid binding protein GB: CAB39665 [Arabidopsis thaliana]; Pfam HMM hit: KH domain family of RNA binding proteins (68416.m00493) 2004 Not regulated NC-NC-NC 258793_at At3g04780 expressed protein (68416.m00515) 2005 Not regulated NC-NC-NC 258794_at At3g04710 ankyrin repeat family protein contains Pfam profile: PF00023 ankyrin repeat (68416.m00505) 2006 Not regulated NC-NC-NC 258796_at At3g04630 expressed protein (68416.m00495) 2007 Not regulated NC-NC-NC 258800_at At3g04550 expressed protein (68416.m00483) 2008 Not regulated NC-NC-NC 258801_at At3g04560 expressed protein (68416.m00484) 2009 Not regulated NC-NC-NC 258803_at At3g04670 WRKY family transcription factor similar to elicitor response element binding protein WRKY3 isolog GB: AAB63078 [Arabidopsis thaliana] (68416.m00500) 2010 Not regulated NC-NC-NC 258810_at At3g03970 expressed protein (68416.m00416) 2011 Not regulated NC-NC-NC 258811_at At3g03990 esterase/lipase/thioesterase family protein low similarity to 3-oxoadipate enol-lactone hydrolase [Pseudomonas sp. B13] GI: 17736948, esterase V [Pseudomonas sp.] GI: 402521; contains Interpro entry IPR000379 (68416.m00420) 2012 Not regulated NC-NC-NC 258812_at At3g03950 expressed protein contains Pfam profile PF04146: YT521-B-like family (68416.m00413) 2013 Not regulated NC-NC-NC 258814_at At3g03980 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain type dehydrogenase/reductase SP: Q06632 [Picea abies] (68416.m00419) 2014 Not regulated NC-NC-NC 258815_at At3g04000 short-chain dehydrogenase/reductase (SDR) family protein similar to SP|Q08632 Short-chain type dehydrogenase/reductase (EC 1.—.—.—) {Picea abies}; contains Pfam: PF00106 oxidoreductase, short chain dehydrogenase/reductase family (68416.m00421) 2015 Not regulated NC-NC-NC 258757_at At3g10910 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) (68416.m01313) 2016 Not regulated NC-NC-NC 258758_at At3g10810 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 Zinc finger, C3HC4 type (RING finger) (68416.m01301) 2017 Not regulated NC-NC-NC 258759_at At3g10800 bZIP transcription factor family protein contains Pfam profile: PF00170 bZIP transcription factor; contains similarity to TGACG- sequence specific DNA-binding protein TGA-1B (HSBF) GB: P14233 [Nicotiana tabacum] (68416.m01300) 2018 Not regulated NC-NC-NC 258771_at At3g10770 expressed protein (68416.m01296) 2019 Not regulated NC-NC-NC 258772_at At3g10860 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative/ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative similar to ubiquinol-cytochrome c reductase GI: 633687 from [Solanum tuberosum] (68416.m01308) 2020 Not regulated NC-NC-NC 258773_at At3g10730 sad1/unc-84-like 2 family protein contains 1 transmembrane domain; similar to Sad1 unc-84 domain protein 2 (GI: 6538749) [Homo sapiens]; similar to Sad1/unc-84-like protein 2 (Fragment) (Swiss-Prot: Q9UH99) [Homo sapiens] (68416.m01292) 2021 Not regulated NC-NC-NC 258780_at At3g11910 ubiquitin-specific protease, putative strong similarity to ubiquitin-specific protease 12 (UBP12) [Arabidopsis thaliana] GI: 11993471; contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF00917: MATH domain (68416.m01460) 2022 Not regulated NC-NC-NC 258784_at At3g11770 expressed protein (68416.m01444) 2023 Not regulated NC-NC-NC 258788_at At3g11820 syntaxin 121 (SYP121)/syntaxin-related protein (SYR1) contains Pfam profiles: PF00804 syntaxin and PF05739: SNARE domain; identical to cDNA syntaxin-related protein At-SYR1 (At-Syrf) GI: 4206788, SP|Q9ZSD4 Syntaxin 121 (AtSYP121) (Syntaxin-related protein At-Syr1) {Arabidopsis thaliana} (68416.m01448) 2024 Not regulated NC-NC-NC 258755_at At3g11950 UbiA prenyltransferase family protein contains Pfam profile PF01040: UbiA prenyltransferase family (68416.m01473) 2025 Not regulated NC-NC-NC 258728_at At3g11800 expressed protein (68416.m01446) 2026 Not regulated NC-NC-NC 258729_at At3g11900 amino acid transporter family protein low similarity to proton/amino acid transporter 1 [Mus musculus] GI: 21908024; belongs to INTERPRO: IPR002422 amino acid/polyamine transporter, family II (68416.m01459) 2027 Not regulated NC-NC-NC 258730_at At3g11730 Ras-related GTP-binding protein, putative similar to Rab1-like small GTP-binding protein GI: 4096662 from [Petunia x hybrida] (68416.m01439) 2028 Not regulated NC-NC-NC 258747_at At3g05810 expressed protein (68416.m00652) 2029 Not regulated NC-NC-NC 258749_at At3g05760 expressed protein (68416.m00647) 2030 Not regulated NC-NC-NC 258706_at At3g09570 expressed protein (68416.m01137) 2031 Not regulated NC-NC-NC 258708_at At3g09580 amine oxidase family protein low similarity to SP|P28553 Phytoene dehydrogenase, chloroplast precursor (Phytoene desaturase) from Glycine max; contains Pfam profile PF01593 amine oxidase, flavin-containing (68416.m01138) 2032 Not regulated NC-NC-NC 258710_s_at At3g09800 clathrin adaptor complex small chain family protein contains Pfam profile: PF01217 clathrin adaptor complex small chain (68416.m01165) 2033 Not regulated NC-NC-NC 258713_at At3g09735 DNA-binding S1FA family protein contains Pfam profile: PF04689 DNA binding protein S1FA (68416.m01153) 2034 Not regulated NC-NC-NC 258715_at At3g09630 60S ribosomal protein L4/L1 (RPL4A) strong similarity to 60S ribosomal protein L1 GB: P49691 (68416.m01142) 2035 Not regulated NC-NC-NC 258691_at At3g08630 expressed protein (68416.m01002) 2036 Not regulated NC-NC-NC 258665_at At3g08710 thioredoxin family protein similar to thioredoxin H-type GB: P29448 SP|P29448 [Arabidopsis thaliana], Thioredoxin H-type 2 (TRX- H2) SP|Q07090 {Nicotiana tabacum}; contains Pfam profile: PF00085 Thioredoxin (68416.m01012) 2037 Not regulated NC-NC-NC 258674_at At3g08740 elongation factor P (EF-P) family protein similar to SP|P33398 Elongation factor P (EF-P) {Escherichia coli O157: H7}; contains Pfam profile PF01132: Elongation factor P (EF-P) (68416.m01016) 2038 Not regulated NC-NC-NC 258675_at At3g08770 lipid transfer protein 6 (LTP6) identical to GI: 8571927 (68416.m01019) 2039 Not regulated NC-NC-NC 258677_at At3g08730 serine/threonine protein kinase (PK1) (PK6) identical to serine/threonine-protein kinase AtPK1/AtPK6 (ribosomal-protein S6 kinase ATPK6) [Arabidopsis thaliana] SWISS-PROT: P42818 (68416.m01015) 2040 Not regulated NC-NC-NC 258678_at At3g08690 ubiquitin-conjugating enzyme 11 (UBC11) E2; identical to gi: 12643427, SP: P35134 (68416.m01010) 2041 Not regulated NC-NC-NC 258679_at At3g08590 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative/phosphoglyceromutase, putative strong similarity to SP|Q42908 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) {Mesembryanthemum crystallinum}; contains Pfam profile PF01676: Metalloenzyme superfamily (68416.m00997) 2042 Not regulated NC-NC-NC 258880_at At3g08580 ADP, ATP carrier protein 1, mitochondrial/ADP/ATP translocase 1/adenine nucleotide translocator 1 (ANT1) identical to SWISS- PROT: P31167 ADP, ATP carrier protein 1 (Adenine nucleotide translocator 1) [Arabidopsis thaliana] (68416.m00995) 2043 Not regulated NC-NC-NC 258681_at At3g08610 expressed protein (68416.m01000) 2044 Not regulated NC-NC-NC 258682_at At3g08720 serine/threonine protein kinase (PK19) identical to serine/threonine-protein kinase AtPK19 (Ribosomal-protein S6 kinase homolog) [Arabidopsis thaliana] SWISS-PROT: Q39030 (68416.m01013) 2045 Not regulated NC-NC-NC 258683_at At3g08760 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68416.m01018) 2046 Not regulated NC-NC-NC 258636_at At3g07890 RabGAP/TBC domain-containing protein similar to plant adhesion molecule 1 [Arabidopsis thaliana] GI: 3511223; contains Pfam profile PF00566: TBC domain (68416.m00964) 2047 Not regulated NC-NC-NC 258637_at At3g07880 Rho GDP-dissociation inhibitor family protein similar to SP|P52565 Rho GDP-dissociation inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens}; contains Pfam profile PF02115: RHO protein GDP dissociation inhibitor (68416.m00963) 2048 Not regulated NC-NC-NC 258638_at At3g07950 rhomboid protein-related contains 6 transmembrane domains; similar to phosphatidyl inositol glycan class T (GI: 14458615) [Homo sapiens] (68416.m00972) 2049 Not regulated NC-NC-NC 258642_at At3g07910 expressed protein (68416.m00966) 2050 Not regulated NC-NC-NC 258843_at At3g08010 expressed protein (68416.m00978) 2051 Not regulated NC-NC-NC 258644_at At3g07810 heterogeneous nuclear ribonucleoprotein, putative/hnRNP, putative contains Pfam profile: PF00078 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (68416.m00955) 2052 Not regulated NC-NC-NC 258650_at At3g09830 protein kinase, putative similar to protein kinase [Lophopyrum elongatum] gi|13022177|gb|AAK11674 (68416.m01172) 2053 Not regulated NC-NC-NC 258651_at At3g09920 phosphatidylinositol-4-phosphate 5-kinase family protein similar to phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1 [Arabidopsis thaliana] GI: 3702691; contains Pfam profiles PF01504: Phosphatidylinositol-4-phosphate 5-Kinase, PF02493: MORN repeat (68416.m01183) 2054 Not regulated NC-NC-NC 258654_at At3g09860 expressed protein (68416.m01176) 2055 Not regulated NC-NC-NC 258656_at At3g09900 Ras-related GTP-binding protein, putative similar to GTP-binding protein GI: 871510 from [Pisum sativum]; contains Pfam profile: PF00071 Ras family (68416.m01180) 2056 Not regulated NC-NC-NC 258858_at At3g09820 adenosine kinase 1 (ADK1)/adenosine 5′-phosphotransferase 1 identical to adenosine kinase 1/adenosine 5′-phosphotransferase 1 SP: Q9SF85 from [Arabidopsis thaliana] (68416.m01170) 2057 Not regulated NC-NC-NC 258660_at At3g09850 D111/G-patch domain-containing protein contains Pfam profile PF01585: G-patch domain (68416.m01175) 2058 Not regulated NC-NC-NC 258662_at At3g02900 expressed protein (68416.m00285) 2059 Not regulated NC-NC-NC 258607_at At3g02730 thioredoxin, putative similar to SP|P29450 Thioredoxin F-type, chloroplast precursor (TRX-F) {Pisum sativum}; contains Pfam profile: PF00085 Thioredoxin (68416.m00265) 2060 Not regulated NC-NC-NC 258612_at At3g02920 replication protein-related similar to replication protein A 30 kDa [Oryza sativa (japonica cultivar-group)] GI: 13518746; contains InterPro entry IPR004365: OB-fold nucleic acid binding domain (68416.m00287) 2061 Not regulated NC-NC-NC 258614_at At3g02770 dimethylmenaquinone methyltransferase family protein similar to bacterial S-adenosylmethicnine:2-demethylmenaquinone methyltransferases; contains Pfam profile PF03737: Dimethytmenaquinone methyltransferase (68416.m00269) 2062 Not regulated NC-NC-NC 258615_at At3g02740 aspartyl protease family protein contains Pfam profile: PF00026 eukaryotic aspartyl protease (68416.m00266) 2063 Not regulated NC-NC-NC 258619_at At3g02780 isopentenyl-diphosphate delta-isomerase II/isopentenyl diphosphate:dimethylallyl diphosphate isomerase II (IPP2) identical to isopentenyl diphosphate:dimethylallyl diphosphate isomerase (IPP2) GB: U49259 [Arabidopsis thaliana] (68416.m00270) 2064 Not regulated NC-NC-NC 258622_at At3g02720 DJ-1 family protein/protease-related similar to Intracellular Protease [Pyrococcus hortkoshii] GI: 11513902; contains Pfam profile: PF01985 ThiJ/PfpI family (68416.m00263) 2065 Not regulated NC-NC-NC 258595_at At3g04500 RNA recognition motif (RRM)-containing protein similar to ssRNA-binding protein [Dictyostelium discoideum] GI: 1546894; contains InterPro entny IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68416.m00477) 2066 Not regulated NC-NC-NC 258599_at At3g04520 threonine aldolase family protein similar to L-allo-threonine aldolase SP: O07051 from [Aeromonas jandaei] (68416.m00479) 2067 Not regulated NC-NC-NC 258599_at At3g04470 expressed protein (68416.m00474) 2068 Not regulated NC-NC-NC 258573_at At3g04260 SAP domain-containing protein contains Pfam domain PF02037: SAP domain (68416.m00450) 2069 Not regulated NC-NC-NC 258576_at At3g04230 40S ribosomal protein S16 (RPS168) similar to 40S ribosomal protein S16 GB: AAD22696 [Arabidopsis thaliana] (68416.m00447) 2070 Not regulated NC-NC-NC 258565_at At3g04350 expressed protein (68416.m00460) 2071 Not regulated NC-NC-NC 258566_at At3g04110 glutamate receptor family protein (GLR1.1) (GLR1) identical to putative glutamate receptor (GLR1) GB: AF079998 [Arabidopsis thaliana]; plant glutamate receptor family. PMID: 11379626 (68416.m00435) 2072 Not regulated NC-NC-NC 258538_at At3g06950 tRNA pseudouridine synthase family protein similar to SP|P07649 tRNA pseudouridine synthase A (EC 4.2.1.70) (Uracil hydrolyase) {Escherichia coli}; contains Pfam profile PF01416: tRNA pseudouridine synthase (68416.m00825) 2073 Not regulated NC-NC-NC 258549_at At3g06930 protein arginine N-methyltransferase family protein similar to protein arginine methyltransferase [Mus musculus] GI: 5257221 (68416.m00822) 2074 Not regulated NC-NC-NC 258554_at At3g06980 DEAD/DEAH box helicase, putative contains Pfam profile: PF00270 DEAD/DEAH box helicase (68416.m00829) 2075 Not regulated NC-NC-NC 258555_at At3g06860 fatty acid multifunctional protein (MFP2) identical to fatty acid multifunctional protein (AtMFP2) GB: AF123254 [gi: 4337027] (Arabidopsis thaliana) (fatty acid beta-oxidation); contains Pfam profiles PF02737 (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain), PF00378 (enoyl-CoA hydratase/isomerase family protein), PF00725 (3-hydroxyacyl-CoA dehydrogenase) (68416.m00814) 2076 Not regulated NC-NC-NC 258563_at At3g05970 long-chain-fatty-acid-CoA ligase/long-chain acyl-CoA synthetase (LACS6) strong similarity to AMP-binding protein (MF39P) gi: 1617274 from Brassica napus, similar to putative long-chain-fatty-acid-CoA ligase (brain isozyme) GB: P33124 [Rattus norvegicus]; contains Pfam AMP-binding enzyme domain PF00501; identical to cDNA AtLACS6 for long-chain acyl-CoA synthetase GI: 22531705 (68416.m00681) 2077 Not regulated NC-NC-NC 258511_at At3g06590 expressed protein (68416.m00765) 2078 Not regulated NC-NC-NC 258512_at At3g06510 glycosyl hydrolase family 1 protein similar to Beta-galactosidase (SP: P22496) [Sutfolobus solfataricus]; almost identical to beta- glucosidase GB: AAF23823 GI: 6685165 from [Arabidopsis thaliana] (68416.m00755) 2079 Not regulated NC-NC-NC 258514_at At3g06610 DNA-binding enhancer protein-related similar to huntingtin interacting protein HYPK (GI: 3329429) [Homo sapiens]; identical to Egd2p (GI: 172043) [Saccharomyces cerevisiae] similar to EGD2 protein (GAL4 DNA-binding enhancer protein 2) (Swiss- Prot: P38879) [Saccharomyces cerevisiae] (68416.m00768) 2080 Not regulated NC-NC-NC 258515_at At3g06650 ATP-citrate synthase, putative/ATP-citrate (pro-S-)-lyase, putative/citrate cleavage enzyme, putative strong similarity to ATP:citrate lyase [Capsicum annum] GI: 13160653; contains Pfam profiles PF00549: CoA-ligase, PF02629: CoA binding domain (68416.m00774) 2081 Not regulated NC-NC-NC 258517_at At3g06580 galactokinase (GAL1) identical to galactokinase (Galactose kinase) [Arabidopsis thaliana] SWISS-PROT: Q9SEE5 (68416.m00764) 2082 Not regulated NC-NC-NC 258522_at At3g06660 PAPA-1-like family protein/zinc finger (HIT type) family protein contains Pfam domains, PF04795: PAPA-1-like conserved region and PF04438: HIT zinc finger (68416.m00784) 2083 Not regulated NC-NC-NC 258524_at At3g06810 acyl-CoA dehydrogenase-related low similarity to acyl-CoA dehydrogenase [Acinetobacter sp. NCIMB9871] GI: 14587418; contains Pfam profiles PF01636: Phosphotransferase enzyme family, PF00441: Acyl-CoA dehydrogenase C-terminal domain, PF02770: Acyl-CoA dehydrogenase middle domain (68416.m00808) 2084 Not regulated NC-NC-NC 258526_at At3g06790 plastid developmental protein DAG, putative similar to DAG protein, chloroplast precursor [Garden snapdragon] SWISS- PROT: Q38732 (68416.m00806) 2085 Not regulated NC-NC-NC 258528_at At3g06770 glycoside hydrolase family 28 protein/polygalacturonase (pectinase) family protein weak similarity to polygalacturonase [Persea americana] GI: 166951; contains PF00295: Glycosyl hydrolases family 28 (polygalacturonases) (68416.m00802) 2086 Not regulated NC-NC-NC 258531_at At3g06720 importin alpha-1 subunit, putative (IMPA1) similar to importin alpha-1 subunit (Karyopherin alpha-1 subunit, KAP alpha) [Arabidopsis thaliana] SWISS-PROT: Q96321 (68416.m00796) 2087 Not regulated NC-NC-NC 258534_at At3g06730 thioredoxin family protein contains Pfam profile: PF00085 Thioredoxin (68416.m00798) 2088 Not regulated NC-NC-NC 258535_at At3g06750 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO: IPR002985 (68416.m00800) 2089 Not regulated NC-NC-NC 258475_at At3g02660 tRNA synthetase class I (W and Y) family protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine-tRNA ligase) (TyrRS) {Bacillus stearothermophilus}; contains Pfam profiles PF00579: tRNA synthetases class I (W and Y), PF01479: S4 domain (68416.m00257) 2090 Not regulated NC-NC-NC 258482_at At3g02530 chaperonin, putative similar to SWISS-PROT: P80317-T-complex protein 1, zeta subunit (TCP-1-zeta) [Mus musculus]; contains Pfam: PF00118 domain, TCP-1/cpn60 chaperonin family (68416.m00241) 2091 Not regulated NC-NC-NC 258486_at At3g02420 expressed protein (68416.m00229) 2092 Not regulated NC-NC-NC 258489_at At3g02520 14-3-3 protein GF14 nu (GRF7) identical to 14-3-3 protein GF14 nu GI: 1531631 from [Arabidopsis thaliana] (68416.m00240) 2093 Not regulated NC-NC-NC 258491_at At3g02700 NC domain-containing protein contains Pfam domain, PF04970: NC domain (68416.m00261) 2094 Not regulated NC-NC-NC 258494_at At3g02450 cell division protein ftsH, putative similar to SWISS-PROT: P46469 cell division protein ftsH homolog [Lactococcus lactis]; contains Pfam domain, PF00004: ATPase, AAA family (‘A’TPases ‘A’ssociated with diverse cellular ‘A’ctivities) (68416.m00232) 2095 Not regulated NC-NC-NC 258495_at At3g02690 integral membrane family protein similar to PecM protein (GI: 5852331) {Vogesella indigofera} and PecM protein (SP: P42194) [Erwinia chrysanthemi] (68416.m00260) 2096 Not regulated NC-NC-NC 258496_at At3g02460 plant adhesion molecule, putative strong similarity to plant adhesion molecule 1 [Arabidopsis thaliana] GI: 3511223; contains Pfam profile PF00566: TBC domain (68416.m00233) 2097 Not regulated NC-NC-NC 258467_at At3g06060 short-chain dehydrogenase/reductase (SDR) family protein contains INTERPRO family IPR002198 short-chain dehydrogenase/reductase (SDR) superfamily (68416.m00693) 2098 Not regulated NC-NC-NC 258469_at At3g06050 alkyl hydroperoxide reductase/thiol specific antioxidant (AhpC/TSA)/mal allergen family protein identical to SP|Q9M7T0 Putative peroxiredoxin, mitochondrial precursor {Arabidopsis thaliana}; similar to thioredoxin peroxidase [Capsicum annum] GI: 18654477; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family (68416.m00692) 2099 Not regulated NC-NC-NC 258448_at At3g22290 expressed protein (68416.m02816) 2100 Not regulated NC-NC-NC 258455_at At3g22440 hydroxyproline-rich glycoprotein family protein identical to hydroxyproline-rich glycoprotein [Arabidopsis thaliana] gi: 9293881|dbj|BAB01784 (68416.m02836) 2101 Not regulated NC-NC-NC 258456_at At3g22420 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68416.m02829) 2102 Not regulated NC-NC-NC 258439_at At3g17240 dihydrolipoamide dehydrogenase 2, mitochondrial/lipoamide dehydrogenase 2 (MTLPD2) nearly identical to GB: AAF34796 [gi: 6984216] from [Arabidopsis thaliana]; alternative splice form exists (68416.m02202) 2103 Not regulated NC-NC-NC 258413_at At3g17300 expressed protein (68416.m02211) 2104 Not regulated NC-NC-NC 258418_at At3g16660 expressed protein (68416.m02129) 2105 Not regulated NC-NC-NC 258430_at At3g16785 phospholipase D zeta1/PLDzeta1 (PLDP1) identical to phospholipase D zeta1 [Arabidopsis thaliana] GI: 15723315, SP|Q9LRZ5 Phospholipase D p1 (EC 3.1.4.4) (AtPLDp1) (Phospholipase D1 PHOX and PX containing domain) (Phospholipase D zeta 1) (PLDzeta1) {Arabidopsis thaliana}; supported by cDNA gi: 15723314; non-consensus splice site (GC) at the beginning of first intron. (68416.m02143) 2106 Not regulated NC-NC-NC 258432_at At3g16570 rapid alkalinization factor (RALF) family protein similar to RALF precursor [Nicotiana tabacum] GI: 16566316 (68416.m02119) 2107 Not regulated NC-NC-NC 258433_at At3g16640 translationally controlled tumor family protein similar to translationally controlled tumor protein GB: AAD10032 from [Hevea brasiliensis] (68416.m02127) 2108 Not regulated NC-NC-NC 258435_at At3g16740 F-box family protein contains F-box domain Pfam: PF00646 (68416.m02137) 2109 Not regulated NC-NC-NC 258437_at At3g16580 protein phosphatase 2C-related/PP2C-related contains protein phosphatase 2C domain (68416.m02116) 2110 Not regulated NC-NC-NC 258386_at At3g15520 peptidyl-prolyl cis-trans isomerase TLP38, chloroplast/thylakoid lumen PPlase of 38 kDa/cyclophilin/rotamase cyclophylin-type; identical to SP|P82869 Thylakoid lumenal 38 kDa protein, chloroplast precursor (P38) {Arabidopsis thaliana} (68416.m01967) 2111 Not regulated NC-NC-NC 258390_at At3g15410 leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam: PF00560, INTERPRO: IPR001611; contains similarity to Hcr2-5D [Lycopersicon esculentum] gi|3894393|gb|AAC78596; identical to leucine-lich repeat protein [Arabidopsis thaliana] gi|2760084|emb|CAA76000 (68416.m01955) 2112 Not regulated NC-NC-NC 258393_at At3g15480 expressed protein (68416.m01963) 2113 Not regulated NC-NC-NC 258394_at At3g15530 expressed protein (68416.m01968) 2114 Not regulated NC-NC-NC 258396_at At3g15460 brix domain-containing protein contains Pfam domain, PF04427: Brix domain (68416.m01961) 2115 Not regulated NC-NC-NC 258401_at At3g15430 regulator of chromosome condensation (RCC1) family protein low similarity to UVB-resistance protein UVR8 [Arabidopsis thaliana] GI: 5478530; contains Pfam profile PF00415: Regulator of chromosome condensation (RCC1) (68416.m01957) 2116 Not regulated NC-NC-NC 258403_at At3g15380 choline transporter-related contains weak similarity to CD92 protein [Homo sapiens] gi|16945323|emb|CAC82175 (68416.m01950) 2117 Not regulated NC-NC-NC 258406_at At3g17615 2118 Not regulated NC-NC-NC 258357_at At3g14350 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase 1 GB: AAC27894 from [Zea mays] (68416.m01814) 2119 Not regulated NC-NC-NC 258365_s_at At3g14390 diaminopimelate decarboxylase, putative/DAP carboxylase, putative similar to diaminopimelate decarboxylase [Arabidopsis thaliana] GI: 6562332; contains Pfam profiles PF02784: Pyridoxal-dependent decarboxylase pyridoxal binding domain, PF00278: Pyridoxal-dependent decarboxylase C-terminal sheet domain (68416.m01820) 2120 Not regulated NC-NC-NC 258371_at At3g14410 transporter-related low similarity to SP|Q96A29 GDP-fucose transporter 1 {Homo sapiens}, phosphoenolpyruvate/phosphate translocator precursor [Mesembryanthemum crystallinum] GI: 9295275; contains 10 predicted transmembrane domains; (68416.m01823) 2121 Not regulated NC-NC-NC 258373_at At3g14290 20S proteasome alpha subunit E2 (PAE2) identical to 20S proteasome subunit PAE2 GB: AAC32081 from [Arabidopsis thaliana] (68416.m01808) 2122 Not regulated NC-NC-NC 258323_at At3g22750 protein kinase, putative similar to protein kinase ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079 (68416.m02889) 2123 Not regulated NC-NC-NC 258324_at At3g22780 CXC domain protein (TSO1) identical to CXC domain protein TSO1 [Arabidopsis thaliana] GI: 7767425 (68416.m02872) 2124 Not regulated NC-NC-NC 258329_at At3g16110 thioredoxin family protein similar to protein disulfide isomerase GI: 5902592 from [Volvox carteri f. nagariensis], GI: 2708314 from Chlamydomonas reinhardtii; contains Pfam profile: PF00085 Thioredoxin (68416.m02035) 2125 Not regulated NC-NC-NC 258313_at At3g15970 Ran-binding protein 1 domain-containing protein/RanBP1 domain-containing protein similar to Ran binding protein [Homo sapiens] GI: 624232; contains Pfam profile PF00638: RanBP1 domain (68416.m02019) 2126 Not regulated NC-NC-NC 258314_at At3g16100 Ras-related GTP-binding family protein contains Pfam profile: PF00071 Ras family (68416.m02034) 2127 Not regulated NC-NC-NC 258285_at At3g16140 photosystem I reaction center subunit VI, chloroplast, putative/PSI-H, putative (PSAH1) identical to SP|Q9SUI7; similar to PSI-H precursor [Nicotiana sylvestris] GI: 407353; contains Pfam profile PF03244: Photosystem I reaction centre subunit VI (68416.m02038) 2128 Not regulated NC-NC-NC 258293_at At3g23430 phosphate transporter, putative (PHO1) identical to PHO1 protein [Arabidopsis thaliana] GI: 20069032; supporting cDNA gi|20069031|gb|AF474076.1|; contains Pfam profiles PF03124: EXS family and PF03105: SPX domain (68416.m02953) 2129 Not regulated NC-NC-NC 258295_at At3g23400 plastid-lipid associated protein PAP/fibrillin family protein contains Pfam profile PF04755: PAP_fibrillin (68416.m02950) 2130 Not regulated NC-NC-NC 258297_at At3g23325 splicing factor, putative similar to Splicing factor 3B subunit 10 (SF3b10) (Pre-mRNA splicing factor SF3b 10 kDa subunit) (Swiss- Prot: Q9BWJ5) [Homo sapiens] (68416.m02942) 2131 Not regulated NC-NC-NC 258298_at At3g23300 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI: 15320410; contains Pfam profile PF03141: Putative methyltransferase (68416.m02939) 2132 Not regulated NC-NC-NC 258310_at At3g26744 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain (68416.m03344) 2133 Not regulated NC-NC-NC 258311_at At3g26810 transport inhibitor response protein, putative E3 ubiquitin ligase SCF complex F-box subunit; similar to transport inhibitor response 1 GI: 2352492 from [Arabidopsis thaliana] (68416.m03354) 2134 Not regulated NC-NC-NC 258281_at At3g26900 shikimate kinase family protein similar to shikimate kinase precursor GB: CAA45121 [Lycopersicon esculentum]; contains Pfam shikimate kinase domain PF01202 (68416.m03386) 2135 Not regulated NC-NC-NC 258253_at At3g26760 short-chain dehydrogenase/reductase (SDR) family protein similar to sex determination protein tasselseed 2 SP: P50160 from [Zea mays] (68416.m03347) 2136 Not regulated NC-NC-NC 258256_at At3g26890 expressed protein (68416.m03364) 2137 Not regulated NC-NC-NC 258268_at At3g15880 WD-40 repeat family protein contains Pfam profile: PF00400 WD domain, G-beta repeat (7 copies) (68416.m02006) 2138 Not regulated NC-NC-NC 258269_at At3g15690 biotin carboxyl carrier protein of acetyl-CoA carboxylase-related contains weak similarity to Biotin carboxyl carrier protein of acetyl- CoA carboxylase, chloroplast precursor (BCCP) (Swiss-Prot: Q42533) [Arabidopsis thaliana] (68416.m01988) 2139 Not regulated NC-NC-NC 258273_at At3g15660 glutaredoxin family protein contains Pfam profile PF00462: Glutaredoxin (68416.m01985) 2140 Not regulated NC-NC-NC 258275_at At3g15760 expressed protein (68416.m01996) 2141 Not regulated NC-NC-NC 258249_s_at At3g15820 phosphatidic acid phosphatase-related/PAP2-related contains Pfam profile PF01569: PAP2 superfamily (68416.m02002) 2142 Not regulated NC-NC-NC 258250_at At3g15850 fatty acid desaturase family protein similar to delta 9 acyl-lipid desaturase (ADS1) GI: 2970034 from [Arabidopsis thaliana] (68416.m02005) 2143 Not regulated NC-NC-NC 258251_at At3g15810 expressed protein contains Pfam profile PF04525: Protein of unknown function (DUF567) (68416.m02001) 2144 Not regulated NC-NC-NC 258223_at At3g15840 expressed protein (68416.m02004) 2145 Not regulated NC-NC-NC 258239_at At3g27690 chlorophyll A-B binding protein (LHCB2:4) nearly identical to Lhcb2 protein [Arabidopsis thaliana] GI: 4741950; similar to chlorophyll A-B binding protein 151 precursor (LHCP) GB: P27518 from [Gossypium hirsutum]; contains Pfam PF00504: Chlorophyll A-B binding protein (68416.m03457) 2146 Not regulated NC-NC-NC 258240_at At3g27690 glycine-rich protein/oleosin identical to oleosin isoform GB: S71286 from [Arabidopsis thaliana]; identical to cDNA oleosin (isoform AtoI2) GI: 987013 (68416.m03454) 2147 Not regulated NC-NC-NC 258244_at At3g27770 expressed protein (68416.m03465) 2148 Not regulated NC-NC-NC 258221_at At3g29160 Snf1-related protein kinase (KIN11) identical to protein kinase AKin11 GI: 1729444 from [Arabidopsis thaliana] (68416.m03652) 2149 Not regulated NC-NC-NC 258193_at At3g29090 pectinesterase family protein similar to pectinesterase precursor GB: Q43043 [Petunia integrifolia]; contains Pfam profile: PF01095 pectinesterase (68416.m03642) 2150 Not regulated NC-NC-NC 258194_at At3g29170 expressed protein contains Pfam PF05915: Eukaryotic protein of unknown function (DUF872) (68416.m03855) 2151 Not regulated NC-NC-NC 258201_at At3g13910 expressed protein (68416.m01757) 2152 Not regulated NC-NC-NC 258202_at At3g13940 expressed protein weak similarity to DNA-directed RNA polymerase I 49 kDa polypeptide (EC 2.7.7.6) (A49) (Swiss-Prot: O14086) [Schizosaccharomyces pombe]; similar to Nuclear pore complex protein Nup107 (Nucleoporin Nup107) (107 kDa nucleoporin) (p105) (Swiss-Prot: P52590) [Rattus novegicus] (68416.m01760) 2153 Not regulated NC-NC-NC 258206_at At3g14010 hydroxyproline-rich glycoprotein family protein similar to Mrs16p (GI: 2737884) [Saccharomyces cerevisiae]; weak similarity to ataxin 2 related protein (GI: 1679686) [Homo sapiens] (68416.m01769) 2154 Not regulated NC-NC-NC 258207_at At3g14050 RelA/SpoT protein, putative (RSH2) nearly identical to RelA/SpoT homolog RSH2 [Arabidopsis thaliana] GI: 7141306; contains Pfam profiles PF01966: HD domain, PF04607: Region found in RelA/SpoT proteins (68416.m01773) 2155 Not regulated NC-NC-NC 258210_at At3g13920 eukaryotic translation initiation factor 4A-1/elF-4A-1 elF-4A-1 gi: 15293046, gi: 15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain (68416.m01758) 2156 Not regulated NC-NC-NC 258211_at At3g17890 expressed protein (68416:m02279) 2157 Not regulated NC-NC-NC 258212_at At3g17920 leucine-rich repeat family protein contains leucine rich repeat (LRR) domains, Pfam: PF00560 (68416.m02282) 2158 Not regulated NC-NC-NC 258219_at At3g17880 tetratricoredoxin (TDX) identical to tetratricoredoxin [Arabidopsis thaliana] GI: 18041544; similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem sap 13 kDa protein-1) {Oryza sativa}; contains Pfam profile: PF00085 Thioredoxin (68416.m02278) 2159 Not regulated NC-NC-NC 258189_at At3g17860 expressed protein (68416.m02276) 2160 Not regulated NC-NC-NC 258161_at At3g17930 expressed protein (68416.m02283) 2161 Not regulated NC-NC-NC 258162_at At3g17810 dihydroorotate dehydrogenase family protein/dihydroorotate oxidase family protein low similarity to SP|Q12882 Dihydropyrimidine dehydrogenase [NADP+] precursor (EC 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) {Homo sapiens}; contains Pfam profile PF01180: Dihydroorotate dehydrogenase (68416.m02271) 2162 Not regulated NC-NC-NC 258163_at At3g17940 aldose 1-epimerase family protein similar to ALDOSE 1-EPIMERASE PRECURSOR GB: P05149 [SP|P05149] from [Acinetobacter calcoaceticus]; contains Pfam profile PF01263 Aldose 1-epimerase (68416.m02284) 2163 Not regulated NC-NC-NC 258165_at At3g17900 expressed protein (68416.m02280) 2164 Not regulated NC-NC-NC 258167_at At3g21560 UDP-glucosyltransferase, putative similar to UDP-glucose:sinapate glucosyltransferase GI: 9794913 from [Brassica napus] (68416.m02719) 2165 Not regulated NC-NC-NC 258170_at At3g21600 senescence/dehydration-associated protein-related similar to senescence-associated protein 12 [Hemerocalis hybrid cultivar] gi|3551958|gb|AAC34857: similar to early-responsive to dehydration stress ERD7 protein [Arabidopsis thaliana] gi|15320412|dbj|BAB83916 (68416.m02724) 2166 Not regulated NC-NC-NC 258171_at At3g21610 expressed protein contains Pfam domain, PF02681: Uncharacterized BCR, COG1963 (68416.m02726) 2167 Not regulated NC-NC-NC 258173_at At3g21630 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68416.m02728) 2168 Not regulated NC-NC-NC 258176_at At3g21650 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B′. putative similar to SWISS-PROT: Q28653 serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit, delta isoform (PP2A, B subunit, B′ delta isoform, PP2A, B subunit, B56 delta isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta isoform, PP2A, B subunit, B′-gamma) [Oryctolagus curiculus]; contains Pfam domain, PF01603: Protein phosphatase 2A regulatory B subunit (B56 family) (68416.m02730) 2169 Not regulated NC-NC-NC 258181_at At3g21670 nitrate transporter (NTP3) nearly identical to nitrate transporter [Arabidopsis thaliana] GI: 4490323; contains Pfam profile: PF00854 POT family (68416.m02732) 2170 Not regulated NC-NC-NC 258127_at At3g24570 peroxisomal membrane 22 kDa family protein contains Mpv17/PMP22 family domain, Pfam: PF04117 (68416.m03087) 2171 Not regulated NC-NC-NC 258128_at At3g24590 signal peptidase I family protein contains Pfam profile: PF00461 signal peptidase I (68416.m03089) 2172 Not regulated NC-NC-NC 258140_at At3g24503 aldehyde dehydrogenase (ALDH1a) identical to aldehyde dehydrogenase ALDH1a [Arabidopsis thaliana] gi|20530143|gb|AAM27004 (68416.m03074) 2173 Not regulated NC-NC-NC 258146_at At3g18060 transducin family protein/WD-40 repeat family protein similar to 66 kDa stress protein (SP: P90587) [Physarum polycaphalum (Slime mold)]; similar to WDR1 protein GB: AAD05042 [Gallus gallus] (Genomics 56 (1), 59-69 (1999)); contains 11 WD-40 repeats (PF00400) (68416.m02297) 2174 Not regulated NC-NC-NC 258149_at At3g18110 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile: PF01535 PPR repeat (68416.m02303) 2175 Not regulated NC-NC-NC 258153_at At3g18165 expressed protein similar to DAM1 (GI: 3985930) [Homo sapiens]; contains Pfam profile PF05700: Breast carcinoma amplified sequence 2 (BCAS2)(68416.m02311) 2176 Not regulated NC-NC-NC 258124_at At3g18215 expressed protein contains Pfam profile PF04654: Protein of unknown function, DUF599 (68416.m02317) 2177 Not regulated NC-NC-NC 258099_at At3g23540 expressed protein; expression supported by MPSS (68416.m02962) 2178 Not regulated NC-NC-NC 258102_at At3g23600 dienelactone hydrolase family protein similar to SP|Q9ZT68 Endo-1.3:1,4-beta-D-glucanase precursor (EC 3.2.1.—) {Zea mays}; contains Pfam profile: PF01738 Dienelaclone hydrolase family (68416.m02968) 2179 Not regulated NC-NC-NC 258104_at At3g23620 brix domain-containing protein contains Pfam domain, PF04427: Brix domain (68416.m02971) 2180 Not regulated NC-NC-NC 258106_at At3g23580 ribonucleoside-diphosphate reductase small chain/ribonudeotide reductase nearly identical to SP|P50651 Ribonucleoside- diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide reductase) (R2 subunit) (Arabidopsis thaliana) (68416.m02966) 2181 Not regulated NC-NC-NC 258108_at At3g23570 dienelactone hydrolase family protein similar to SP|Q9ZT766 Endo-1,3;1,4-beta-D-glucanase precursor (EC 3.2.1.—) {Zea mays}; contains Pfam profile: PF01738 dienelactone hydrolase family (68416.m02965) 2182 Not regulated NC-NC-NC 258113_at At3g14650 cytochrome P450, putative similar to GB: Q05047 from [Catharanthus roseus] (68416.m01854) 2183 Not regulated NC-NC-NC 258092_at At3g14595 expressed protein (68416.m01848) 2184 Not regulated NC-NC-NC 258064_at At3g14680 cytochrome P450, putative similar to GB: Q05047 from [Catharanthus roseus] (68416.m01857) 2185 Not regulated NC-NC-NC 258071_s_at At3g26070 plastid-lipid associated protein PAP/fibrillin family protein contains Pfam profile PF04755: PAP_fibrillin (68416.m03246) 2186 Not regulated NC-NC-NC 258072_at At3g26090 expressed protein (68416.m03249) 2187 Not regulated NC-NC-NC 258075_at At3g25900 homocysteine S-methyltransferase 1 (HMT-1) identical to GB: AAF23821 from [Arabidopsis thaliana] (68416.m03227) 2188 Not regulated NC-NC-NC 258076_at At3g25920 50S ribosomal protein L15, chloroplast (CL15) identical to GB: P25873 from [Arabidopsis thaliana] (68416.m03231) 2189 Not regulated NC-NC-NC 258081_at At3g26085 CAAX amino terminal protease family protein contains Pfam profile PF02517 CAAX amino terminal protease family protein (68416.m03248) 2190 Not regulated NC-NC-NC 258086_at At3g25860 dihydrolipoamide S-acetyltransferase (LTA2) identical to dihydrolipoamide S-acetyltransferase (LTA2) [Arabidopsis thaliana] GI: 5881963 (68416.m03222) 2191 Not regulated NC-NC-NC 258087_at At3g26060 peroxiredoxin Q, putative similar to peroxiredoxin Q [Sedum lineare] GI: 6899842; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family (68416.m03245) 2192 Not regulated NC-NC-NC 258061_at At3g25910 expressed protein (68416.m03230) 2193 Not regulated NC-NC-NC 258062_at At3g26000 F-box family protein contains Pfam PF00646: F-box domain; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1: At5g67250 (68416.m03239) 2194 Not regulated NC-NC-NC 258033_at At3g21250 ABC transporter family protein similar to MRP-like ABC transporter GB: AAC49791 from [Arabidopsis thaliana] (68416.m02885) 2195 Not regulated NC-NC-NC 258038_at At3g21260 glycolipid transfer protein-related contains weak similarity to Glycolipid transfer protein (GLTP) (Swiss-Prot:P17403) [Sus scrofa] (68416.m02686) 2196 Not regulated NC-NC-NC 258039_at At3g21200 expressed protein (68416.m02679) 2197 Not regulated NC-NC-NC 258044_at At3g21270 Dof-type zinc finger domain-containing protein (ADOF2) identical to Dof zinc finger protein ADOF2 GI: 3608263 from [Arabidopsis thaliana]; identical to cDNA adof2 mRNA for Dof zinc finger protein GI: 3608262; contains Pfam profile PF02701: Dof domain, zinc finger (68416.m02688) 2198 Not regulated NC-NC-NC 258045_at At3g21280 ubiquitin-specific protease 7, putative (UBP7) similar to GI: 11993467 (68416.m02689) 2199 Not regulated NC-NC-NC 258049_at At3g16220 expressed protein similar to CGI-18 protein GB: AAD27727 [Homo sapiens] (68416.m02047) 2200 Not regulated NC-NC-NC 258050_at At3g16200 expressed protein (68416.m02045) 2201 Not regulated NC-NC-NC 258052_at At3g16190 isochorismatase hydrolase family protein low similarity to SP|P32400 N-carbamoylsarcosine amidase (EC 3.5.1.59) (N- carbamoylsarcosine amidohydrolase) {Arthrobacter sp}; contains Pfam profile PF00857: isochorismatase family protein (68416.m02044) 2202 Not regulated NC-NC-NC 258054_at At3g16240 delta tonoplast integral protein (delta-TIP) identical to delta tonoplast integral protein (delta-TIP) (GI: 9279707)(GB: U39485) [Arabidopsis thaliana] (Plant Cell 8 (4), 587-599 (1996)) (68416.m02049) 2203 Not regulated NC-NC-NC 258055_at At3g16250 ferredoxin-related contains Pfam profile: PF00111 2Fe—2S iron-sulfur cluster binding domains (68416.m02050) 2204 Not regulated NC-NC-NC 258057_at At3g28970 expressed protein contains Pfam domain PF03556: Domain of unknown function (DUF298) (68416.m03621) sodium hydrogen antiporter, putative similar to NhaD [Vibrio parahaemolyticus] gi|3123728|dbj|BAA25994; Na+/H+ aniporter 2205 Not regulated NC-NC-NC 258020_at At3g19490 (NhaD) family member, PMID: 11500563 (68416.m02470) 2206 Not regulated NC-NC-NC 258022_at At3g19460 reticulon family protein (RTNLB11) weak similarity to neuroendocrine-specific protein C [Homo sapiens] GI: 307311; identical to cDNA RTNLB11 GI: 32331878 (68416.m02467) 2207 Not regulated NC-NC-NC 258026_at At3g19290 ABA-responsive element-binding protein 2 (AREB2) almost identical (one amino acid) to GB: AAF27182 from (Arabidopsis thaliana); contains Pfam profile PF00170: bZIP transcription factor: identical to cDNA abscisic acid responsive elements-binding factor (ABRE) mRNA, partial cds GI: 6739282 (68416:m02446) protein kinase (ATN1) almost identical (1 amino acid difference) to protein kinase ATN1 [Arabidopsis thaliana] 2208 Not regulated NC-NC-NC 257972_at At3g27560 gi|1054833|emb|CAA63387 (68416.m03444) 2209 Not regulated NC-NC-NC 257973_at At3g20720 expressed protein (68416.m02622) 2210 Not regulated NC-NC-NC 257981_at At3g20770 ethylene-insensitive.3 (EIN3) identical to ethylene-insensitive3 GI: 2224933 from [Arabidopsis thaliana] (68416.m02627) 2211 Not regulated NC-NC-NC 257983_at At3g20790 oxidoreductase family protein weak similarity to SP|Q07982 Glucose-fructose oxidoreductase precursor (EC 1.1.99.28) (Zymomonas mobilis); contains Pfam profiles PF01408: Oxidoreductase family NAD-binding Rossmann fold, PF02894: Oxidoreductase family C-terminal alpha\beta domain (68416.m02629) 2212 Not regulated NC-NC-NC 257984_at At3g20800 rcd1-like cell differentiation protein, putative similar to protein involved in sexual development [Schizosaccharomyces pombe] GI: 1620896; contains Pfam profile PF04078: Cell differentiation family, Rcd1-like (68416.m02630) 2213 Not regulated NC-NC-NC 257989_at At3g19770 vacuolar sorting protein 9 domain-containing protein/VPS9 domain-containing protein contains Pfam domain PF02204: Vacuolar sorting protein 9 (VPS9) domain (68416.m02502) 2214 Not regulated NC-NC-NC 257990_at At3g19860 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain (68416.m02515) 2215 Not regulated NC-NC-NC 257996_at At3g19950 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) (68416.m02525) 2216 Not regulated NC-NC-NC 257962_at At3g19790 hypothetical protein; expression supported by MPSS (68416.m02506) 2217 Not regulated NC-NC-NC 257964_at At3g19850 phototropic-responsive NPH3 family protein contains NPH3 family domain, Pfam: PF03000 (68416.m02514) 2218 Not regulated NC-NC-NC 257965_at At3g19900 expressed protein (68416.m02520) 2219 Not regulated NC-NC-NC 257966_at At3g19800 expressed protein (68416.m02508) 2220 Not regulated NC-NC-NC 257967_at At3g19910 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68416.m02521) 2221 Not regulated NC-NC-NC 257937_at At3g19810 expressed protein contains Pfam PF02620: Uncharacterized ACR, COG1399 (68416.m02509) 2222 Not regulated NC-NC-NC 257939_at At3g19930 sugar transport protein (STP4) identical to GB: S25009 GI: 16524 from [Arabidopsis thaliana] (68416.m02523) 2223 Not regulated NC-NC-NC 257940_at At3g21790 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase (68416.m02748) 2224 Not regulated NC-NC-NC 257953_at At3g21865 expressed protein (68416.m02756) 2225 Not regulated NC-NC-NC 257954_at At3g21760 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase (68416.m02745) aminoalcoholphosphotransferase, putative strong similarity to aminoalcoholphosphotransferase [Arabidopsis thaliana] GI: 3661593; 2228 Not regulated NC-NC-NC 257933_at At3g25585 contains Pfam profile PF01066: CDP-alcohol phosphatidyltransferase (68416.m03182) 2227 Not regulated NC-NC-NC 257906_at At3g25520 60S ribosomal protein L5 similar to 60S ribosomal protein L5 GB: P49625 from [Oryza sativa] (68416.m03173) 2228 Not regulated NC-NC-NC 257907_at At3g25470 bacterial hemolysin-related similar to hemolysine GB: AAD36643 from [Thermotoga maritima], contains Pfam profile: PF01479 S4 domain (68416.m03166) 2229 Not regulated NC-NC-NC 257909_at At3g25480 rhodanese-like domain-containing protein contains Rhodanese-like domain PF: 00581 (68416.m03167) 2230 Not regulated NC-NC-NC 257911_at At3g25530 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein low similarity to SP|P23523 2-hydroxy-3- oxopropionate reductase (EC 1.1.1.60) (Tartronate semialdehyde reductase) {Escherichia coli}; contains Pfam profile PF03446: NAD binding domain of 6-phosphogluconate dehydrogenase; supporting cDNA gi|15375067|gb|AY044183.1|(68416.m03174) 2231 Not regulated NC-NC-NC 257913_at At3g25540 longevity-assurance (LAG1) family protein similar to Altemaria stem canker resistance protein (ASC1) [Lycopersicon esculentum] GI: 7688742; contains Pfam profile PF03798: Longevity-assurance protein (LAG1); supporting cDNA gi|7658238|gb|AF198179.1|AF198179 (68416.m03175) 2232 Not regulated NC-NC-NC 257914_at At3g25545 expressed protein (68416.m03176) 2233 Not regulated NC-NC-NC 257916_at At3g23210 basic helix-loop-helix (bHLH) family protein similar to hypothetical protein GB: CAB10220 from [Arabidopsis thaliana] (68416.m02926) 2234 Not regulated NC-NC-NC 257924_at At3g23190 lesion inducing protein-related similar to ORF, able to induce HR-like lesions [Nicotiana tabacum] (68416.m02924) 2235 Not regulated NC-NC-NC 257926_at At3g23280 zinc finger (C3HC4-type RING finger) family protein/ankyrin repeat family protein contains Pfam profile: PF00097 zinc finger. C3HC4 type (RING finger) and Pfam profile: PF00023 ankyrin repeat (68416.m02934) 2236 Not regulated NC-NC-NC 257932_at At3g17040 tetratricopeptide repeat (TPR)-containing protein low similarity to SP|Q9FNS4 PsbB mRNA maturation factor Mbb1, chloroplast precursor {Chlamydomonas reinhardtit}: contains Pfam profile: PF00515: TPR Domain (68416.m02175) 2237 Not regulated NC-NC-NC 257879_at At3g17160 expressed protein (68416.m02189) 2238 Not regulated NC-NC-NC 257880_at At3g16910 AMP-dependent synthetase and ligase family protein similar to AMP-binding protein GI: 1903034 from [Brassica napus]; contains Pfam AMP-binding domain PF00501; identical to cDNA adenosine monophosphate binding protein 7 AMPBP7 (AMPBP7) GI: 20799722 (68416.m02162) 2239 Not regulated NC-NC-NC 257887_at At3g17090 protein phosphatase 2C family protein/PP2C family protein similar to Ser/Thr protein phosphatase 2C (PP2C6) (GI: 15020818) [Arabidopsis thaliana]: similar to protein phosphatase 2C (GI: 3608412) [Mesembryanthemum crystallinum], contains Pfam PF00481: Protein phosphatase 2C domain; (68416.m02180) 2240 Not regulated NC-NC-NC 257892_at At3g17020 universal stress protein (USP) family protein similar to early nodulin ENOD18 [Vicia faba] GI: 11602747; contains Pfam profile PF00582: universal stress protein family (68416.m02173) 2241 Not regulated NC-NC-NC 257893_at At3g17000 ubiquitin-conjugating enzyme, putative similar to Non-Canonical UBiquitin Conjugating Enzyme 1 (NCUBE1) from [Gallus gallus] GI: 7362937, [Mus musculus] GI: 7363050, [Homo sapiens] GI: 7362973; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme (68416.m02171) 2242 Not regulated NC-NC-NC 257894_at At3g17100 expressed protein (68416.m02181) 2243 Not regulated NC-NC-NC 257895_at At3g16950 dihydrolipoamide dehydrogenase 1, plastidic/lipoamide dehydrogenase 1 (PTLPD1) identical to plastidic lipoamide dehydrogenase from Arabidopsis thaliana [gi: 7159282] (68416.m02166) 2244 Not regulated NC-NC-NC 257897_at At3g18030 halotolerance protein (HAL3A) identical to GB: AAD51616 from [Arabidopsis thaliana); similar to Halotolerance protein Hal3b (SP: P94063)[Arabidopsis thaliana]; contains Pfam PF02441: Flavoprotein (68416.m02291) 2245 Not regulated NC-NC-NC 257902_at At3g28450 leucine-rich repeat transmembrane protein kinase, putative similar to receptor kinase GB: AAD02501 from [Arabidopsis thaliana] (68416.m03554) 2246 Not regulated NC-NC-NC 257844_at At3g28480 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to prolyl 4-hydroxylase, alpha subunit, from Gallus gallus [GI: 212530], Rattus norvegicus [GI: 474940], Mus musculus [SP|Q60715]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain (68416.m03558) 2247 Not regulated NC-NC-NC 257854_at At3g12980 histone acetyltransferase 5 (HAC5) identical to HAC5 (GI: 21105780) [Arabidopsis thaliana]; similar to CREB-binding protein GB: S39162 from [Homo sapiens] (68416.m01617) 2248 Not regulated NC-NC-NC 257856_at At3g12930 expressed protein contains Pfam domain PF02410: Domain of unknown function DUF143 (68416.m01611) 2249 Not regulated NC-NC-NC 257860_at At3g13062 expressed protein weak similarity to SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP) {Homo sapiens} (68416.m01629) 2250 Not regulated NC-NC-NC 257865_at At3g17750 protein kinase family protein contains Pfam profile: PF00069 Eukaryotic protein kinase domain (68416.m02265) 2251 Not regulated NC-NC-NC 257886_at At3g17770 dihydroxyacetone kinase family protein contains Pfam domains, PF02733: DAK1 domain and PF02734: DAK2 domain (68416.m02267) 2252 Not regulated NC-NC-NC 257887_at At3g17780 expressed protein (68416.m02268) 2253 Not regulated NC-NC-NC 257868_at At3g25070 RPM1-interacting protein 4 (RIN4) identical to SP|Q8GYN5 RPM1-interacting protein 4 {Arabidopsis thaliana} (68416.m03132) 2254 Not regulated NC-NC-NC 257817_at At3g25150 nuclear transport factor 2 (NTF2) family protein/RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); similar to ras-GTPase-activating protein (GAP<120>) SH3-domain- binding protein 2 GB: NP_035946 [Mus musculus] (68416.m03140) 2255 Not regulated NC-NC-NC 257818_at At3g25120 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein contains Pfam PF02466: Mitochondrial import inner membrane translocase subunit Tim17 (68416.m03137) 2256 Not regulated NC-NC-NC 257820_at At3g25220 FK506-binding protein 2-1 (FKBP15-1)/immunophilin/paptidyl-prolyl cis-trans isomerase/rotamase identical to SP|Q38935 FK506-binding protein 2-1 precursor (EC 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase) (PPiase) (Rotamase) (15 kDa FKBP) (FKBP- 15-1) {Arabidopsis thaliana}, immunophilin (FKBP15-1) GB: U52046 [Arabidopsis thaliana] (Proc. Natl. Acad. Sci. U.S.A. 93 (14). 6964-6969 (19961)) (68416.m03150) 2257 Not regulated NC-NC-NC 257826_at At3g26730 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68416.m03342) 2258 Not regulated NC-NC-NC 257827_at At3g26630 pentatricopeptide (PPR) repeat-containing protein contains Pfom profile: PF01535 PPR repeat (68416.m03328) 2259 Not regulated NC-NC-NC 257830_at At3g26690 MutT/nudix family protein similar to SP|Q09790 Diadenosine 5′,5′″-P1,P6-hexaphosphate hydrolase (EC 3.6.1.—) (Ap6A hydrolase) {Schizosaccharomyces pombe}; contains Pfam profile PF00293: NUDIX domain (68416.m03337) 2280 Not regulated NC-NC-NC 257831_at At3g26710 expressed protein (68416.m03340) 2261 Not regulated NC-NC-NC 257833_at At3g26640 transducin family protein/WD-40 repeat family protein contains 3 WD-40 repeats (PF00400); similar to ATAN11 (GI: 2290528) [Arabidopsis thaliana] (Genes Dev. 11 (11), 1422-1434 (1997)); contains Pfam profile: PF00400 WD domain, G-beta repeat (3 copies) (68416.m03329) 2262 Not regulated NC-NC-NC 257834_at At3g26720 glycosyl hydrolase family 38 protein similar to lysosomal alpha-mannosidase GI: 3522867 from [Homo sapiens] (68416.m03341) 2263 Not regulated NC-NC-NC 257807_at At3g26650 glyceraldehyde 3-phosphate dehydrogenase A, chloroplast (GAPA)/NADP-dependent glyceraldehydephosphate dehydrogenase subunit A identical to SP|P25856 Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precursor (EC 1.2.1.13) (NADP- dependent glyceraldehydephosphate dehydrogenase subunit A) {Arabidopsis thaliana} (68416.m03330) 2264 Not regulated NC-NC-NC 257780_at At3g27100 expressed protein (68416.m03390) 2265 Not regulated NC-NC-NC 257783_at At3g26950 expressed protein (68416.m03374) 2266 Not regulated NC-NC-NC 257784_at At3g26970 2267 Not regulated NC-NC-NC 257785_at At3g26980 ubiquitin family protein contains INTERPRO: IPR000626 ubiquitin domain (68416.m03376) oligopeptide transporter OPT family protein similar to iron-phytosiderophore transporter protein yellow stripe 1 [Zea mays] 2268 Not regulated NC-NC-NC 257789_at At3g27020 GI: 10770865; contains Pfam profile PF03169: OPT oligopeptide transporter protein (68416.m03380) 2269 Not regulated NC-NC-NC 257791_at At3g27110 peptidase M48 family protein contains Pfam domain, PF01435: Peptidase family M48 (68416.m03391) 2270 Not regulated NC-NC-NC 257794_at At3g27050 expressed protein (68416.m03384) 2271 Not regulated NC-NC-NC 257797_at At3g15940 glycosyl transferase family 1 protein contains Pfam profile: PF00534 Glycosyl transferases group 1 (68416.m02016) 2272 Not regulated NC-NC-NC 257800_at At3g15900 expressed protein (68416.m02011) 2273 Not regulated NC-NC-NC 257805_at At3g18830 mannitol transporter, putative similar to mannitol transporter [Apium graveolens var. dulce] GI: 12004316; contains Pfam profile PF00083: major facilitator superfamily protein (68416.m02391) actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] 2274 Not regulated NC-NC-NC 257749_at At3g18780 GI: 1669387 and to At1g49240 (68416.m02385) 2275 Not regulated NC-NC-NC 257754_at At3g18820 Ras-related GTP-binding protein, putative similar to Ras-related protein RAB7 GI: 1370186 from [Pisum sativum], Plant Mol. Biol. 21 (6), 1195-1199 (1993); contains Pfam profile: PF00071 Ras family (68416.m02390) 2276 Not regulated NC-NC-NC 257756_at At3g18680 aspartate/glutamate/uridylate kinase family protein similar to UMP-kinase GB: CAB38122 gi: 4488612 from [Lactococcus lactis]; contains Pfam profile PF00696: Amino acid kinase family (68416.m02372) 2277 Not regulated NC-NC-NC 257758_at At3g22980 elongation factor Tu family protein similar to eukaryotic translation elongation factor 2 GB: NP_001952 [Homo sapiens] (68416.m02898) 2278 Not regulated NC-NC-NC 257766_at At3g23030 auxin-responsive protein/indoleacetic acid-induced protein 2 (IAA2) identical to SP|P49678 Auxin-responsive protein IAA2 (Indoleacetic acid-induced protein 2) {Arabidopsis thaliana} (68416.m02903) auxin-responsive protein/indoleacetic acid-induced protein 7 (IAA7) identical to SP|Q38825|AXI7_ARATH Auxin-responsive 2279 Not regulated NC-NC-NC 257789_at At3g23050 protein IAA7 (Indoleacetic acid-induced protein 7) (68416.m02905) 2280 Not regulated NC-NC-NC 257772_at At3g23080 expressed protein weak similarity to SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP) {Homo sapiens} (68416.m02909) 2281 Not regulated NC-NC-NC 257773_at At3g29185 expressed protein (68416.m03658) 2282 Not regulated NC-NC-NC 257745_at At3g29240 expressed protein similar to At1g33780 [Arabidopsis thaliana]; contains Pfam profile PF02622: Uncharacterized ACR, COG1678 (68416.m03668) 2283 Not regulated NC-NC-NC 257723_at At3g18500 noctumin-retated contains weak similarity to Noctumin (CCR4 protein homolog) (Swiss-Prot: O35710) [Mus musculus] (68416.m02351) 2284 Not regulated NC-NC-NC 257727_at At3g18380 expressed protein (68416.m02337) 2285 Not regulated NC-NC-NC 257729_at At3g18520 histone deacetylase family protein similar to SP|P53973 Histone deacetylase HDA1 {Saccharomyces cerevisiae}; contains Pfam profile PF00850: Histone deacetylase family; AT-acceptor splice site at intron 7 (68416.m02353) 2286 Not regulated NC-NC-NC 257731_at At3g18430 calcium-binding EF hand family protein similar to Calcineurin B subunit (Protein phosphatase 2B regulatory subunit) (Calcineurin regulatory subunit) SP: P42322 from [Naegleria gruberi]; contains Pfam profile PF00036: EF hand (68416.m02343) CCAAT displacement protein-related/CDP-related similar to CCAAT displacement protein (CDP) (Cut-like 1) (Swiss-Prot: P39880) 2287 Not regulated NC-NC-NC 257732_at At3g18480 [Homo sapiens]; contains Pfam: PF00904 Involucin repeat (68416.m02348) 2288 Not regulated NC-NC-NC 257711_at At3g27430 20S proteasome beta subunit B (PBB1) identical to 20S proteasome beta subunit PBB1 (PBB1) GB: AAC32066 [Arabidopsis thaliana] (Genetics 149 (2), 677-692 (1998)); contains Pfam profile: PF00227 proteasome A-type and B-type: (68416.m03428) 2289 Not regulated NC-NC-NC 257713_at At3g27380 succinate dehydrogenase, iron-sulphur subunit, mitochondrial (SDH2-1) nearly identical to mitochondrial succinate dehydrogenase iron-sulphur subunit (sdh2-1) [gi: 12049598] from Arabidopsis thaliana (68416.m03423) 2290 Not regulated NC-NC-NC 257714_at At3g27360 histone H3 identical to histone H3 from Zea mays SP|P05203, Medicago saliva GI: 166384, Encephalartos altensteinii SP|P08903, Pisum sativum SP|P02300; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 (68416.m03421) 2291 Not regulated NC-NC-NC 257886_at At3G12790 2292 Not regulated NC-NC-NC 257687_at At3g12800 short-chain dehydrogenase/reductase (SDR) family protein contains Pfam profile PF00106: oxidoreductase, short drain dehydrogenase/reductase family (68416.m01597) 2293 Not regulated NC-NC-NC 257695_at At3g12680 floral homeotic protein (HUA1) identical to floral homeotic protein HUA1 [Arabidopsis thaliana] gi|16797661|gb|AAK01470 (68416.m01582) 2294 Not regulated NC-NC-NC 257697_at At3g12700 aspartyl protease family protein contains Pfam PF00026: Eukaryotic aspartyl protease; similar to CND41, chloroplast nucleoid DNA binding protein (GI: 2541876) [Nicotiana tabacum] (68416.m01587) 2295 Not regulated NC-NC-NC 257699_at At3g12780 phosphoglycerate kinase, putative similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase (68416.m01598) 2296 Not regulated NC-NC-NC 257702_at At3g12670 CTP synthase, putative/UTP-ammonia ligase, putative similar to SP|P17812 CTP synthase (EC 6.3.4.2) (UTP-ammonia ligase) {Homo sapiens}; contains Pfam profile PF00117: glutamine amidotransferase class-I (68416.m01579) 2297 Not regulated NC-NC-NC 257703_at At3g12640 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68416.m01573) 2298 Not regulated NC-NC-NC 257705_at At3g12760 expressed protein similar to RP42 protein [Homo sapiens] GI: 9896486; contains Pfam profile PF00627: UBA/TS-N domain, PF03556: Domain of unknown function (DUF298) (68416.m01593) 2299 Not regulated NC-NC-NC 257707_at At3g12650 expressed protein (68416.m01575) 2300 Not regulated NC-NC-NC 257708_at At3g13330 expressed protein (68416.m01878) 2301 Not regulated NC-NC-NC 257654_at At3g13310 DNAJ heat shock N-terminal domain-containing protein similar to J11 protein [Arabidopsis thaliana] GI: 9843641; contains Pfam profile: PF00226 DnaJ domain (68416.m01676) 2302 Not regulated NC-NC-NC 257657_at At3g13235 ubiquitin family protein contains INTERPRO: IPR000626 ubiquitin domain (68416.m01668) 2303 Not regulated NC-NC-NC 257659_at At3g13226 regulatory protein RecX family protein contains Pfam PF02631: regulatory protein RecX (68416.m01662) 2304 Not regulated NC-NC-NC 257662_at At3g13320 calcium exchanger (CAX2) almost identical to low affinity calcium antiporter CAX2 (GI: 1488267) [Arabidopsis thaliana]; Ca2+: Cation Antiporter (CaCA) Family member PMID: 11500563 (68416.m01677) 2305 Not regulated NC-NC-NC 257674_at At3g20390 endoribonudease L-PSP family protein contains Pfam domain PF01042: Endoribonuclease L-PSP (68416.m02583) 2306 Not regulated NC-NC-NC 257675_at At3g20310 ethylene-responsive element-binding family protein similar to SP|O80339 Ethylene responsive element binding factor 3 (AtERF3) {Arabidopsis thaliana}; contains Pfam profile PF00847: AP2 domain (68416.m02573) 2307 Not regulated NC-NC-NC 257676_at At3g20320 mice-related family protein contains Pfam PF02470: mice related protein (68416.m02574) 2308 Not regulated NC-NC-NC 257677_at At3g20290 calcium-binding EF hand family protein similar to EH-domain containing protein 1 from {Mus musculus} SP|Q9WVK4 and {Homo sapiens} SP|Q9H4M9, receptor-mediated endocytosis 1 from [Caenorhabditis elegans] GI: 13487775, GI: 13487777, GI: 13487779; contains INTERPRO: IPR002048 calcium-binding EF-hand domain (68416.m02571) 2309 Not regulated NC-NC-NC 257680_at At3g20330 aspartate carabmoyltransferase, chloroplast/aspartate transcarbamylase/ATCase (PYRB) identical to SP|P49077 Aspartate carbamoyltransferase, chloroplast precursor (EC 2.1.3.2) (Aspartate transcarbamylase) (ATCase) {Arabidopsis thaliana}) (68416.m02576) 2310 Not regulated NC-NC-NC 257621_at At3g20410 calmodulin-domain protein kinase isoform 9 (CPK9) identical to calmodulin-domain protein kinase CDPK isoform 9 [Arabidopsis thaliana] gi|1399265|gb|AAB03242 (68416.m02585) 2311 Not regulated NC-NC-NC 257623_at At3g26210 cytochrome P450 71B23, putative (CYP71B23) Identical to Cytochrome P450 71B23 (SP: Q9LTM0)[Arabidopsis thaliana]; contains Pfam profile: PF00067 cytochrome P450 (68416.m03270) 2312 Not regulated NC-NC-NC 257628_at At3g26290 cytochrome P450 71B26, putative (CYP71B26) identical to cytochrome P450 71B26 (SP: Q9LTL0) [Arabidopsis thaliana]; contains Pfam profile: PF00067 cytochrome P450 (68416.m03280) 2313 Not regulated NC-NC-NC 257647_at At3g25805 expressed protein (68416.m03212) 2314 Not regulated NC-NC-NC 257648_at At3g16840 DEAD/DEAH box helicase, putative (RH13) similar to RNA helicase GB: CAA09204 from [Arabidopsis thaliana]; identical to cDNA. DEAD box RNA helicase, RH13 GI: 3776002 (68416.m02150) glycoside hydrolase family 28 protein/polygalacturonase (pectinase) family protein weak similarity to SP|P05117 2315 Not regulated NC-NC-NC 257651_at At3g16850 Polygalacturonase 2A precursor (EC 3.2.1.15) (Pectinase) {Lycopersicon esculentum}; contains PF00295: Glycosyl hydrolases family 28 (68416.m02151) 2316 Not regulated NC-NC-NC 257652_at At3g16810 pumilio/Puf RNA-binding domain-containing protein contains Pfam profile: PF00806 Pumilio-family RNA binding domains (68416.m02147) 2317 Not regulated NC-NC-NC 257594_at At3g24740 expressed protein (68416.m03106) 2318 Not regulated NC-NC-NC 257598_at At3g24800 PRT1 protein (PRT1) E3, N-end rule ubiquitin ligase, contains two RING finger domain; identical to PRT1 [Arabidopsis thaliana] GI: 3319884 (68416.m03112) 2319 Not regulated NC-NC-NC 257599_at At3g24830 60S ribosomal protein L13A (RPL13aB) similar to 60S RIBOSOMAL PROTEIN L13A GB: P35427 from [Rattus norvegicus] (68416.m03115) 2320 Not regulated NC-NC-NC 257600_at At3g24770 CLE41, putative CLAVATA/ESR-Related 41 (CLE41) (68416.m03109) 2321 Not regulated NC-NC-NC 257608_at At3g13860 chaperonin, putative similar to SWISS-PROT: P29197-chaperonin CPN60, mitochondrial precursor (HSP60) [Arabidopsis thaliana]; contains Pfam: PF00118 domain, TCP-1/cpn60 chaperonin family (68416.m01751) 2322 Not regulated NC-NC-NC 257609_at At3g13845 expressed protein (68416.m01748) 2323 Not regulated NC-NC-NC 257611_at At3g26580 expressed protein (68416.m03318) ATP-dependent RNA helicase, putative similar to SP|Q14582 ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box 2324 Not regulated NC-NC-NC 257310_at At3g26560 protein 8) {Homo sapiens}; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C- terminal domain, PF00575: S1 RNA binding domain (68416.m03315) 2325 Not regulated NC-NC-NC 257291_at At3g15590 DNA-binding protein, putative similar to DNA-binding protein [Triticum aestivum] GI: 6958202; contains Pfam profile: PF01535 PPR repeat (68416.m01975) 2326 Not regulated NC-NC-NC 257293_at At3g15580 autophagy Bi (APGBi) identical to autophagy Bi [Arabidopsis thaliana] GI: 19912167; contains Pfam profile PF02991: Microtubule associated protein 1A/1B, light chain 3; supporting cDNA gi|21638957|gb|AF492760.1|(68416.m01974) 2327 Not regulated NC-NC-NC 257295_at At3g17420 protein kinase family protein contains protein kinase domain, Pfam: PF00069; contains serine/threonine protein kinase domain, INTERPRO: IPR002290 (68416.m02225) 2328 Not regulated NC-NC-NC 257269_at At3g17440 novel plant SNARE 13 (NPSN13) identical to Novel plant SNARE 13 (AtNPSN13) (SP: Q9LRP1) {Arabidopsis thaliana}; contains Pfam profile: PF00190 11S plant seed storage protein (68416.m02227) 2329 Not regulated NC-NC-NC 257238_at At3g17430 phosphate translocator-related low similarity to phosphoenolpyruvate/phosphate translocator precursor [Mesembryanthemum crystallinum] GI: 9295275, SP|P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea} (68416.m02226) 2330 Not regulated NC-NC-NC 257240_at At3g24200 monooxygenase family protein low similarity to VisC [Escherichia coli][GI: 216629]; contains Pfam profile: PF01360 Monooxygenase (68416.m03037) 2331 Not regulated NC-NC-NC 257249_at At3g24180 expressed protein contains Pfam domain PF04685: Protein of unknown function, DUF608 (68416.m03035) 2332 Not regulated NC-NC-NC 257250_at At3g24120 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain (68416.m03028) 2333 Not regulated NC-NC-NC 257252_at At3g24170 glutathione reductase, putative identical to GB: P48641 from [Arabidopsis thaliana] (68416.m03034) 2334 Not regulated NC-NC-NC 257266_at At3g15010 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI: 19574236; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (68416.m01898) 2335 Not regulated NC-NC-NC 257235_at At3g15060 Ras-related GTP-binding family protein similar to GTP-binding protein GI: 303742 from [Pisum sativum]; contains Pfam profile: PF00071 ras family (68416.m01905) 2336 Not regulated NC-NC-NC 257236_at At3g15095 expressed protein (68416.m01909) 2337 Not regulated NC-NC-NC 257211_at At3g15080 exonuclease family protein contains exonuclease domain, Pfam: PF00929 (68416.m01907) 2338 Not regulated NC-NC-NC 257212_at At3g15090 oxidoreductase, zinc-binding dehydrogenase family protein low similarity to NOGO-interacting mitochondrial protein from Mus musculus [gi: 14522884]; contains Pfam profile: PF00107 zinc-binding dehydrogenases (68416.m01908) 2339 Not regulated NC-NC-NC 257214_at At3g15040 expressed protein contains Pfam profile PF04520: Protein of unknown function, DUF584 (68416.m01903) 2340 Not regulated NC-NC-NC 257219_at At3g14930 uroporphyrinogen decarboxylase, putative/UPD, putative similar to uroporphyrinogen decarboxylase (chloroplast) from Nicotiana tabacum [SP|Q42967], Hordeum vulgare [SP|Q42855], Zea mays [SP|O81220]; contains Pfam domain uroporphyrinogen decarboxylase (URO-D) PF01208 (68416.m01887) 2341 Not regulated NC-NC-NC 257225_s_at At3g27850 50S ribosomal protein L12-3, chloroplast (CL12-C) identical to ribosomal protein L12 GB: X68046 [Arabidopsis thaliana] (J. Biol. Chem. 269 (10), 7330-7336 (1994)) (68416.m03473) 2342 Not regulated NC-NC-NC 257226_at At3g27880 expressed protein (68416.m03476) 2343 Not regulated NC-NC-NC 257227_at At3g27820 monodehydroascorbate reductase, putative similar to cytosolic monodehydroascorbate reductase GB: BAA77214 [Oryza sativa] (68416.m03470) 2344 Not regulated NC-NC-NC 257228_at At3g27890 NADPH-dependent FMN reductase family protein contains Pfam profile: PF03358 NADPH-dependent FMN reductase (68416.m03479) 2345 Not regulated NC-NC-NC 257232_at At3g16500 auxin-responsive AUX/IAA family protein similar to SP|O24408|AXII_ARATH Auxin-responsive protein IAA18 (Indoleacetic acid- induced protein 18) {Arabidopsis thaliana}; contains Pfam profile: PF02309: AUX/IAA family (68416.m02106) 2346 Not regulated NC-NC-NC 257177_at At3g23490 cyanate lyase family contains Pfam profile: PF02560 cyanate lyase C-terminal domain (68416.m02959) 2347 Not regulated NC-NC-NC 257178_at At3g13070 CBS domain-containing protein/transporter associated domain-containing protein similar to SP|Q54318 Hemolysin C [Serpulina hyodysenteriae] {Traponema hyodysenteriae}; contains Pfam profiles PF00571: CBS domain, PF03471: Transporter associated domain, PF01595: Domain of unknown function (68416.m01634) 2348 Not regulated NC-NC-NC 257189_at At3g13222 expressed protein (68416.m01655) 2349 Not regulated NC-NC-NC 257190_at At3g13120 30S ribosomal protein S10, chloroplast, putative similar to 30S ribosomal protein S10 GB: P02364 [Escherichia coli] (est matches suggest the N-terminal extension) (68416.m01642) 2350 Not regulated NC-NC-NC 257192_at At3g13200 Cwf15/Cwc15 cell cycle control family protein contains Pfam profile PF04889: Cwf15/Cwc15 cell cycle control protein; similar to Cell cycle control protein cwf15 (Swiss-Prot: P78794) [Schizosaccharomyces pombe] (68416.m01652) 2351 Not regulated NC-NC-NC 257194_at At3g13110 serine O-acetyltransferase (SAT-1) identical to serine acetyltransferase (Sat-1) GI: 1184048 {Arabidopsis thaliana} (68416.m01641) 2352 Not regulated NC-NC-NC 257199_at At3g23710 chloroplast inner membrane import protein Tic22, putative similar to Tic22 [Pisum sativum] gi|3769671|gb|AAC64606; contains Pfam domain PF04278: Tic22-like family (68416.m02981) 2353 Not regulated NC-NC-NC 257204_at At3g23805 rapid alkalinization factor (RALF) family protein similar to RALF precursor [Nicotiana tabacum] GI: 16566316 (68416.m02992) 2354 Not regulated NC-NC-NC 257172_at At3g23700 S1 RNA-binding domain-containing protein contains Pfam domain, PF00575: S1 RNA binding domain (68416.m02980) 2355 Not regulated NC-NC-NC 257144_at At3g27300 glucose-6-phosphate 1-dehydrogenase/G6PD (ACG9) identical to glucose-6-phosphate 1-dehydrogenase (acg9) [Arabidopsis thaliana] GI: 5732195 (68416.m03412) 2356 Not regulated NC-NC-NC 257146_at At3g27260 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO: IPR001487 (68416.m03407) 2357 Not regulated NC-NC-NC 257149_at At3g27280 prohibitin, putative strong similarity to prohibitin [Arabidopsis thaliana] GI: 1946331; contains Pfam profile PF01145: SPFH domain/ Band 7 family (68416.m03409) 2358 Not regulated NC-NC-NC 257150_at At3g27230 expressed protein (68416.m03404) 2359 Not regulated NC-NC-NC 257152_at At3g27310 expressed protein (68416.m03413) 2360 Not regulated NC-NC-NC 257154_at At3g27210 expressed protein (68416.m03402) 2361 Not regulated NC-NC-NC 257157_at At3g24350 syntaxin, putative (SYP32) similar to SP|Q9FFK1 Syntaxin 31 (AtSYP31) (AtSED5) {Arabidopsis thaliana}, syntaxin 5A GB: NP_003155 from [Homo sapiens] (J. Mol. Neurosci. (1997) 8 (2), 159-161) (68416.m03057) 2362 Not regulated NC-NC-NC 257168_at At3g24430 expressed protein contains Pfam profile PF01883: Domain of unknown function (68416.m03066) 2363 Not regulated NC-NC-NC 257169_at At3g24315 sec20 family protein contains Pfam PF03908: Sec20 (68416.m03053) 2364 Not regulated NC-NC-NC 257122_at At3g20250 pumilio/Puf RNA-binding domain-containing protein contains Pfam profile: PF00806 Pumilio-family RNA binding domains (aka PUM HD, Pumilio homology domain) (8 copies at C-terminus) (68416.m02565) 2365 Not regulated NC-NC-NC 257132_at At3g20230 50S ribosomal protein L18 family similar to ribosomal protein L18 (GI: 29342325) [Enterococcus faecalis V583]; similar to 50S ribosomal protein L18 (Swiss-Prot: O24704) [Synechococcus sp.] (68416.m02563) 2366 Not regulated NC-NC-NC 257088_at At3g20510 expressed protein contains Pfam profile PF03647: Uncharacterised protein family (UPF0136) (68416.m02597) 2367 Not regulated NC-NC-NC 257092_at At3g20550 forkhead-associated domain-containing protein/FHA domain-containing protein weak similarity to SP|Q28147 Nuclear inhibitor of protein phosphatase-1 (NIPP-1) (Protein phosphatase 1, regulatory inhibitor subunit 8) {Bos taurus}; contains Pfam profile PF00498: FHA domain (68416.m02601) 2368 Not regulated NC-NC-NC 257093_at At3g20570 plastocyanin-like domain-containing protein (68416.m02604) 2369 Not regulated NC-NC-NC 257095_at At3g20560 thioredoxin family protein contains Pfam profile PF00085: Thioredoxin (68416.m02603) 2370 Not regulated NC-NC-NC 257105_at At3g15300 VQ motif-containing protein contains PF05678: VQ motif (68416.m01932) 2371 Not regulated NC-NC-NC 257052_at At3g15290 3-hydroxybutyryl-CoA dehydrogenase, putative similar to S(+)-beta-hydroxybutyryl CoA dehydrogenase (3-hydroxybutyryl-CoA dehydrogenase) {Paracoccus denitrificans} GI: 12003356; contains Pfam profiles PF02737: 3-hydroxyacyl-CoA dehydrogenase NAD binding, PF00725: 3-hydroxyacyl-CoA dehydrogenase C-terminal (68416.m01931) 2372 Not regulated NC-NC-NC 257053_at At3g15210 ethylene-responsive element-binding factor 4 (ERF4) identical to ethylene responsive element binding factor 4 SP: O80340 from [Arabidopsis thaliana] (68416.m01922) 2373 Not regulated NC-NC-NC 257054_at At3g15353 metallothionein protein, putative (68416.m01944) 2374 Not regulated NC-NC-NC 257055_at At3g15351 expressed protein (68416.m01941) 2375 Not regulated NC-NC-NC 257058_at At3g15352 cytochrome c oxidase copper chaperone-related contains similarity to cytochrome c oxidase copper chaperone [Mus musculus] SWISS-PROT: P56394 (68416.m01943) 2376 Not regulated NC-NC-NC 257062_at At3g18290 zinc finger protein-related weak alignment to Pfam profiles: PF00097 Zinc finger, C3HC4 type (RING finger) (2 copies) (68416.m02326) 2377 Not regulated NC-NC-NC 257066_at At3g18280 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to TED4 [Zinnia elegans] GI: 493721; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 (68416.m02325) 2378 Not regulated NC-NC-NC 257072_at At3g14220 GDSL-motif lipase/hydrolase family protein similar to myrosinase-associated proteins GI: 1769968, GI: 1769970 from [Brassica napus]; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family; contains 1 predicted transmembrane domain; (68416.m01797) 2379 Not regulated NC-NC-NC 257074_at At3g19660 expressed protein (68416.m02491) 2380 Not regulated NC-NC-NC 257046_at At3g19740 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family (68416.m02499) 2381 Not regulated NC-NC-NC 257018_at At3g19630 radical SAM domain-containing protein similar to florfenicol resistance protein [Staphylococcus sciun] GI: 9909980; contains Pfam profile PF04055: radical SAM domain protein (68416.m02488) 2382 Not regulated NC-NC-NC 257019_at At3g19640 magnesium transporter CorA-like family protein (MRS2-3) low similarity to SP|Q01926 RNA splicing protein MRS2, mitochondrial precursor {Saccharomyces cerevisiae}; contains Pfam profile PF01544: CorA-like Mg2+ transporter protein (68416.m02489) 2383 Not regulated NC-NC-NC 257029_at At3g19240 expressed protein (68416.m02441) 2384 Not regulated NC-NC-NC 257038_at At3g19260 longevity-assurance (LAG1) family protein similar to Alternaria stern canker resistance protein (ASC1) [Lycopersicon esculentum] GI: 7668742; contains Pfam profile PF03798: Longevity-assurance protein (LAG1) (68416.m02443) 2385 Not regulated NC-NC-NC 257016_at At3g28690 protein kinase, putative similar to protein kinase APK1A [Arabidopsis thaliana] Swiss-Prot: Q06548 (68416.m03580) 2386 Not regulated NC-NC-NC 256988_s_at At3g28715 H+-transporting two-sector ATPase, putative similar to SP|P54641 Vacuolar ATP synthase subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) {Dictyostelium discoideum}; contains Pfam profile PF01992: ATP synthase (C/AC39) subunit (68416.m03584) 2387 Not regulated NC-NC-NC 257003_at At3g14110 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515: TPR Domain (68416.m01783) 2388 Not regulated NC-NC-NC 257007_at At3g14205 phosphoinositide phosphatase family protein contains similarity to phosphoinositide phosphatase SAC1 [Rattus norvegicus] gi|11095248|gb|AAG29810; contains Pfam domain, PF02383: Sacl homology domain; identical to SAC domain protein 2 (SAC2) GI: 31415720 (68416.m01795) 2389 Not regulated NC-NC-NC 257010_at At3g14090 exocyst subunit EXO70 family protein contains Pfam domain PF03081: Exo70 exocyst complex subunit; (68416.m01781) 2390 Not regulated NC-NC-NC 256983_at At3g13470 chaperonin, putative similar SWISS-PROT: P21240-RuBisCO subunit binding-protein beta subunit, chloroplast precursor (60 kDa chaperonin beta subunit, CPN-60 beta) [Arabidopsis thaliana]; contains Pfam: PF00118 domain, TCP-1/cpn60 chaperonin family (68416.m01695) 2391 Not regulated NC-NC-NC 256984_at At3g13480 expressed protein; expression supported by MPSS (68416.m01696) 2392 Not regulated NC-NC-NC 256954_at At3g13550 ubiquitin-conjugating enzyme (COP10) identical to ubiquitin-conjugating enzyme COP10 [Arabidopsis thaliana] GI: 20065779; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme (68416.m01703) 2393 Not regulated NC-NC-NC 256956_at At3g13410 expressed protein (68416.m01686) 2394 Not regulated NC-NC-NC 256958_at At3g13430 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) (68416.m01688) 2395 Not regulated NC-NC-NC 256959_at At3g13440 expressed protein (68416.m01690) 2396 Not regulated NC-NC-NC 256961_at At3g13445 transcription initiation factor IID-1 (TFIID-1)/TATA-box factor 1/TATA sequence-binding protein 1 (TBP1) identical to Swiss- ProtP28147 transcription initiation factor TFIID-1 (TATA-box factor 1)(TATA sequence-binding protein 1) (TBP-1) [Arabidopsis thaliana] (68416.m01691) 2397 Not regulated NC-NC-NC 256972_at At3g21140 expressed protein (68416.m02671) 2398 Not regulated NC-NC-NC 256978_at At3g21110 phosphoribosylamidoimidazole-succinocarboxamide synthase/SAICAR synthetase (PUR7) identical to phosphoribosylamidoimidazole-succinocarboxamide synthase, chloroplast [precursor] SP: P38025 from [Arabidopsis thaliana] (68416.m02668) 2399 Not regulated NC-NC-NC 256979_at At3g21055 photosystem II 5 kD protein, putative identical to Swiss-Prot: Q39195 photosystem II 5 kDa protein, chloroplast precursor (PSII-T) [Arabidopsis thaliana] (68416.m02661) 2400 Not regulated NC-NC-NC 256928_at At3g22590 RNA pol II accessory factor Cdc73 family protein contains Pfam PF05179: RNA pol II accessory factor, Cdc73 family (68416.m02854) 2401 Not regulated NC-NC-NC 256932_at At3g22520 expressed protein (68416.m02848) 2402 Not regulated NC-NC-NC 256934_at At3g22530 expressed protein contains Pfam profile: PF00011 HSP20: Hsp20/alpha crystallin family (68416.m02847) 2403 Not regulated NC-NC-NC 256936_at At3g22480 prefoldin-related KE2 family protein similar to Swiss-Prot: Q9UHV9 prefoldin subunit 2 (Protein HSPC231) [Homo sapiens]; contains Pfam domain, PF01920: KE2 family protein (68416.m02841) 2404 Not regulated NC-NC-NC 256942_at At3g23290 expressed protein contains Pfam profile PF04852: Protein of unknown function (DUF640) (68416.m02936) 2405 Not regulated NC-NC-NC 256944_at At3g18990 transcriptional factor B3 family protein contains Pfam profile PF02362: B3 DNA binding domain (68416.m02410) 2406 Not regulated NC-NC-NC 256900_at At3g24670 pectate lyase family protein similar to pectate lyase GP: 14531296 from [Fragaria x ananassa] (68416.m03097) 2407 Not regulated NC-NC-NC 256902_s_at At3g23910 expressed protein (68416.m03004) 2408 Not regulated NC-NC-NC 256905_at At3g23990 chaperonin (CPN60) (HSP60) identical to SWISS-PROT: P29197-chaperonin CPN60, mitochondrial precursor (HSP60) [Arabidopsis thaliana] (68416.m03013) 2409 Not regulated NC-NC-NC 256907_at At3g24030 hydroxyethylthiazole kinase family protein contains Pfam profile: PF02110 hydroxyethylthiazole kinase family (68416.m03018) 2410 Not regulated NC-NC-NC 256908_at At3g24040 glycosyltransferase family 14 protein/core-2/I-branching enzyme family protein contains Pfam profile: PF02485 Core-2/I-Branching enzyme (68416.m03019) 2411 Not regulated NC-NC-NC 256914_at At3g23880 F-box family protein contains F-box domain Pfam: PF00646 (68416.m03001) 2412 Not regulated NC-NC-NC 256915_at At3g23900 RNA recognition motif (RRM)-containing protein (68416.m03003) 2413 Not regulated NC-NC-NC 256890_at At3g23830 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss- Prot: Q9SVM8) [Arabidopsis thatiana]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (68416.m02995) 2414 Not regulated NC-NC-NC 256861_at At3g23920 beta-amylase, putative/1,4-alpha-D-glucan maltohydrolase, putative similar to beta-amylase enzyme [Arabidopsis thaliana] GI: 6065749, beta-amylase PCT-BMYI from [Solanum tuberosum]; contains Pfam profile PF01373: Glycosyl hydrolase family 14 (68416.m03005) 2415 Not regulated NC-NC-NC 256868_at At3g26400 eukaryotic translation initiation factor 4B, putative/eIF-4B, putative similar to eukaryotic initiation factor 4B [Arabidopsis thaliana] GI: 6739518 (68416.m03292) 2416 Not regulated NC-NC-NC 256870_at At3g26300 cytochrome P450 family protein contains Pfam profile: PF00067 cytochrome P450 (68416.m03282) 2417 Not regulated NC-NC-NC 256876_at At3g26360 ribosomal protein-related similar to SP|Q9Z3S4 30S ribosomal protein S21 (Rhizobium meliloti) (68416.m03288) 2418 Not regulated NC-NC-NC 256877_at At3g26470 expressed protein (68416.m03300) 2419 Not regulated NC-NC-NC 256878_at At3g26480 major latex protein-related/MLP-related low similarity to major latex protein {Papaver somniferum}[GI: 294060] contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family (68416.m03299) 2420 Not regulated NC-NC-NC 256879_at At3g26370 expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; (68416.m03289) 2421 Not regulated NC-NC-NC 256881_at At3g26410 expressed protein (68416.m03293) 2422 Not regulated NC-NC-NC 256882_at At3g26420 glycine-rich RNA-binding protein similar to RNA-binding protein (RZ-1) GB: BAA12064 [Nicotiana sylvestris]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (68416.m03295) 2423 Not regulated NC-NC-NC 256888_at At3g15160 expressed protein (68416.m01917) 2424 Not regulated NC-NC-NC 256855_at At3g15190 chloroplast 30S ribosomal protein S20, putative contains Pfam profile: PF01649 ribosomal protein S20 (68416.m01920) 2425 Not regulated NC-NC-NC 256829_at At3g22850 expressed protein similar to auxin down-regulated protein ARG10 [Vigna radiata] GI: 2970051, wali7 (aluminum-induced protein) [Triticum aestivum] GI: 451193 (68416.m02881) 2426 Not regulated NC-NC-NC 256832_at At3g22880 meiotic recombination protein, putative similar to Swiss-Prot: Q14565 meiotic recombination protein DMC1/LIM15 homolog [Homo sapiens]; contains non-consensus AT/AC non-consensus splice sites at intron 14 (68416.m02884) 2427 Not regulated NC-NC-NC 256836_at At3g22960 pyruvate kinase, putative similar to pyruvate kinase isozyme A, chloroplast precursor [Ricinus communis] SWISS-PROT: Q43117 (68416.m02895) 2428 Not regulated NC-NC-NC 256838_at At3g22950 ADP-ribosylation factor, putative similar to ADP-ribosylation factor GB: P91924 [Dugesia japonica] (68416.m02893) 2429 Not regulated NC-NC-NC 256797_at At3g18600 DEAD/DEAH box helicase, putative non-consensus acceptor splice site AT at axon 2; similar to DEAD box helicase protein GB: NP_006764 from [Homo sapiens], contains Pfam profile: PF00270 DEAD/DEAH box helicase (68416.m02364) 2430 Not regulated NC-NC-NC 256799_at At3g18560 expressed protein (68416.m02360) 2431 Not regulated NC-NC-NC 256804_at At3g20920 translocation protein-related contains weak similarity to Drosophila translocation protein 1 (GI: 558181) [Drosophila melanogaster] (68416.m02644) 2432 Not regulated NC-NC-NC 256807_at At3g20970 nitrogen fixation NifU-like family protein simikar ti HIRA-interacting protein 5 (NIFU FAMILY) (SP: Q9QZ23) {Mus musculus}; contains Pfam profile: PF01106 NifU-like domain (68416.m02650) 2433 Not regulated NC-NC-NC 256819_at At3g21390 mitcohonchial substrate carrier family protein (68416.m02700) 2434 Not regulated NC-NC-NC 256823_at At3g22220 hAT dimerisation domain-containing protein contains Pfam profiles PF04937: Protein of unknown function (DUF 659), PF05699 hAT family dimerisation domain (68416.m02803) 2435 Not regulated NC-NC-NC 256793_at At3g22160 VQ motif-containing protein contains PF05678: VQ motif (68416.m02797) 2436 Not regulated NC-NC-NC 256794_at At3g22230 60S ribosomal protein L27 (RPL27B) similar to 60S RIBOSOMAL PROTEIN L27 GB: P41101 from [Solanum tuberosum] (68416.m02804) 2437 Not regulated NC-NC-NC 256769_at At3g13890 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68416.m01729) 2438 Not regulated NC-NC-NC 256771_at At3g13710 prenylated rab acceptor (PRA1) family protein weak similarity to prenylated Rab acceptor [Mus musculus] GI: 7716652; contains Pfam profile PF03208: Prenylated rab acceptor (PRA1) (68416.m01730) 2439 Not regulated NC-NC-NC 256776_at At3g13772 endomembrane protein 70, putative TM4 family; (68416.m01738) 2440 Not regulated NC-NC-NC 256783_at At3g13670 protein kinase family protein contains Pfam domains, PF00069: Protein kinase domain (68416.m01722) 2441 Not regulated NC-NC-NC 256785_at At3g13720 prenylated rab acceptor (PRA1) family protein contains Pfam profile PF03208: Prenylated rab acceptor (PRA1) (68416.m01732) 2442 Not regulated NC-NC-NC 256763_at At3g16860 phytochelatin synthetase-related contains Pfam PF04833: Phytochelatin synthetase-like conserved region (68416.m02156) 2443 Not regulated NC-NC-NC 256744_at At3g29350 two-component phosphorelay mediator 1 (HP1) identical to ATHP1 [Arabidopsis thaliana] GI: 4156241 (68416.m03685) 2444 Not regulated NC-NC-NC 256747_at At3g29180 expressed protein (68416.m03657) 2445 Not regulated NC-NC-NC 256751_at At3g27170 chloride channel protein (CLC-b) identical to CLC-b chloride channel protein GB: CAA96058 from [Arabidopsis thaliana] (J. Biol. Chem. 271 (52), 33632-33638 (1996)) (68416.m03398) 2446 Not regulated NC-NC-NC 256752_at At3g27180 expressed protein (68416.m03399) 2447 Not regulated NC-NC-NC 256753_at At3g27160 ribosomal protein S21 family protein contains Pfam profile: PF01165 ribosomal protein S21 (68416.m03397) 2448 Not regulated NC-NC-NC 256755_at At3g25600 calmodulin, putative similar to calmodulin GI: 239841 from [Paramecium tetraurelia] (68416.m03187) 2449 Not regulated NC-NC-NC 256728_at At3g25660 glutamyl-tRNA(Gln) amidotransferase, putative similar to SP|O06491 Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.—) {Bacillus subtilis}, contains Pfam profile PF01425: Amidase (68416.m03194) 2450 Not regulated NC-NC-NC 256724_at At2g34040 apoptosis inhibitory 5 (API5) family protein contains Pfam domain PF05918 Apoptosis inhibitory protein 5 (API5) (68415.m04167) 2451 Not regulated NC-NC-NC 256727_at At3g52240 expressed protein (68416.m05741) 2452 Not regulated NC-NC-NC 256671_at At3952290 calmodulin-binding family protein similar to SF16 protein [Halianthus annus] GI: 560150; contains Pfam profile PF00612: IQ calmodulin-binding motif (68416.m05747) 2453 Not regulated NC-NC-NC 256673_at At3g52370 beta-Ig-H3 domain-containing protein/fasciclin domain-containing protein weak similarity to osteoblast specific factor 2 [Homo sapiens] GI: 393319; contains Pfam profile PF02469: Fasciclin domain; supporting cDNA gi|26450295|dbj|AK117808.1| (68416.m05756) 2454 Not regulated NC-NC-NC 256674_at At3g52360 expressed protein (68416.m05755) 2455 Not regulated NC-NC-NC 256679_at At3g52300 ATP synthase D chain-related contains weak similarity to ATP synthase D chain, mitochondrial (EC 3.6.3.14) (Swiss-Prot: P31399) [Rattus norvegicus] (68416.m05748) 2456 Not regulated NC-NC-NC 256680_at At3g52230 expressed protein (68416.m05739) 2457 Not regulated NC-NC-NC 256681_at At3g52340 sucrose-phosphatase 2 (SPP2) identical to sucrose-phosphatase (SPP2) [Arabidopsis thaliana] GI: 13811669; supporting cDNA gi|13811668|gb|AF356816.1|AF356816 (68416.m05752) 2458 Not regulated NC-NC-NC 256682_at At3g52200 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide acetyltransferase (E2) subunit of PDC [Arabidopsis thaliana] GI: 559395; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain; supporting cDNA gi|5881964|gb|AF066080.1|AF066080 (68416.m05733) 2459 Not regulated NC-NC-NC 256683_at At3g52220 expressed protein (68416.m05737) 2460 Not regulated NC-NC-NC 256696_at At3g20650 mRNA capping enzyme family protein contains Pfam PF03291: mRNA capping enzyme, large subunit (68416.m02613) 2461 Not regulated NC-NC-NC 256666_at At3g20670 histone H2A, putative strong similarity to histone H2A GB: AAF64418 GI: 7595337 from Arabidopsis thaliana, Triticum aestivum GI: 536892; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 (68416.m02616) 2462 Not regulated NC-NC-NC 256649_at At3g13570 SC35-like splicing factor, 30a kD (SCL30a) almost identical to SC35-like splicing factor SCL30a GI: 9843661 from [Arabidopsis thaliana]; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (68416.m01707) 2463 Not regulated NC-NC-NC 258655_at At3g18890 expressed protein similar to UV-B and ozone similarly regulated protein 1 UOS1 [Pisum sativum] GI: 20339364 (68416.m02399) 2464 Not regulated NC-NC-NC 256637_at At3g12030 expressed protein similar to membrane protein GB: BAA86974 GI: 6467175 from [Homo sapiens] (68416.m01492) 2465 Not regulated NC-NC-NC 256611_at At3g29270 expressed protein (68416.m03674) 2466 Not regulated NC-NC-NC 256612_at At3g29280 expressed protein; expression supported by MPSS (68416.m03676) 2467 Not regulated NC-NC-NC 256629_at At3g19980 serine/threonine protein phosphatase (STPP) identical to serine/threonine protein phosphatase [Arabidopsis thaliana] GI: 14582206, very similar to serine/threonine protein phosphatase GB: Z47076 GI: 1143510 [Malus domestica]; contains Pfam profile PF00149: Ser/Thr protein phosphatase (68416.m02528) 2468 Not regulated NC-NC-NC 256603_at At3g28270 expressed protein similar to At14a protein (GI: 11994571 and GI: 11994573) [Arabidopsis thaliana] (68416.m03530) 2469 Not regulated NC-NC-NC 256607_at At3g32930 expressed protein (68416.m04173) 2470 Not regulated NC-NC-NC 256590_at At3g28730 structure-specific recognition protein 1/high mobility group protein/HMG protein nearly identical to SP|Q05153 Structure-specific recognition protein 1 homolog (HMG protein) {Arabidopsis thaliana}; contains Pfam profile PF00505: HMG (high mobility group) box; contains Pfam profile PF03531: Structure-specife recognition protein (68416.m03587) 2471 Not regulated NC-NC-NC 256598_at At3g30180 cytochrome P450, putative similar to cytochrome P450 homolog (SP: U54770) [Lycopersicon esculentum] (68416.m03806) 2472 Not regulated NC-NC-NC 256573_at At3g14860 NHL repeat-containing protein contains Pfam profile PF01436: NHL repeat (68416.m01878) 2473 Not regulated NC-NC-NC 258575_at At3g14790 NAD-dependent epimerase/dehydratase family protein similar to dTDP-glucose 4,6-dehydratase from Aneurinibacillus thermoaerophilus GI: 16357461, Saccharopolyspora spinosa GI: 15077647, RmIB from Leptospira borgpetersenii GI: 4234803; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family (68416.m01869) 2474 Not regulated NC-NC-NC 256567_at At3g19553 amino acid permease family protein weak similarity to aspartate/glutamate transporter 1 [Mus musculus] GI: 21322754; contains Pfam profile PF00324: Amino acid permease (68416.m02479) 2475 Not regulated NC-NC-NC 256568_at At3g19520 expressed protein contains Pfam profile PF04776: Protein of unknown function (DUF626) (68416.m02475) 2476 Not regulated NC-NC-NC 256570_at At3g19540 expressed protein contains Pfam profile PF04788: Protein of unknown function (DUF620) (68416.m02477) 2477 Not regulated NC-NC-NC 256541_at At1g42540 glutamate receptor family protein (GLR3.3) plant glutamate receptor family, PMID: 11379626 (68414.m04905) 2478 Not regulated NC-NC-NC 256542_at At1g42550 expressed protein (68414.m04906) 2479 Not regulated NC-NC-NC 256525_at At1g66180 aspartyl protease family protein contains Pfam PF00026: Eukaryotic aspartyl protease profile; similar to CND41, chloroplast nucleoid DNA binding protein (GI: 2541876) [Nicotiana tabacum] (68414.m07512) 2480 Not regulated NC-NC-NC 256530_at At1g33290 sporulation protein-related isoform contains non-consensus AT-donor acceptor site at intron 6; similar to Stage III sporulation protein AA. (Swiss-Prot: Q01367) [Bacillus subtilis]; similar to SpoIIIAA (GI: 1303904) [Bacillus subtilis]; similar to stage III sporulation protein AA (GI: 18145497) [Clostridium perfringens str. 13] (68414.m04117) 2481 Not regulated NC-NC-NC 256534_at At1g33270 patatin-related contains Patatin domain PF01734 (68414.m04114) 2482 Not regulated NC-NC-NC 256536_at At1g33330 peptide chain release factor, putative similar to peptide chain release factor 2 [Campylobacter jejuni] GI: 6469929; contains Pfam profile PF00472: Peptidyl-tRNA hydrolase domain (68414.m04123) 2483 Not regulated NC-NC-NC 256485_at At1g31440 SH3 domain-containing protein 1 (SH3P1) nearly identical to SH3 domain-containing protein 1 [Arabidopsis thaliana] GI: 16974676; contains Pfam profile PF00018: SH3 domain (68414.m03850) 2484 Not regulated NC-NC-NC 256497_at At1g31580 expressed protein identical to ORF1 [Arabidopsis thaliana] gi|457716|emb|CAA50905 (68414.m03875) 2485 Not regulated NC-NC-NC 256451_s_at At1g75170 SEC14 cytosolic factor family protein/phosphoglyceride transfer family protein similar to polyphosphoinositide binding protein Ssh1p (GI: 2739044) (Glycine max); similar to SEC14 cytosolic factor (Phosphatidylinositol/phosphatidylcholine transfer protein) (PI/PCTP) (SP: P24859) [Kluyveromyces lactis] and to SEC14 cytosolic factor (SP: P53989) [Candida glabrata] (68414.m08731) 2486 Not regulated NC-NC-NC 256455_at At1g75190 expressed protein (68414.m08735) 2487 Not regulated NC-NC-NC 256456_at At1g75180 expressed protein (68414.m08732) 2488 Not regulated NC-NC-NC 256458_at At1g75220 integral membrane protein, putative strong similarity to integral membrane protein GI: 1209756 from [Beta vulgaris]; contains Pfam profile PF00083: major facilitator superfamily protein (68414.m08738) 2489 Not regulated NC-NC-NC 256468_at At1g32550 fertedoxin family protein similar to ferredoxin from Synechocystis sp. [GI: 48019]; contains Pfam profile PF00111 2Fe—2S iron-sulfur cluster binding domain (68414.m04017) 2490 Not regulated NC-NC-NC 256424_at At1g33490 expressed protein (68414.m04145) 2491 Not regulated NC-NC-NC 256439_at At3g10920 superoxide dismutase [Mn], mitochondrial (SODA)/manganese superoxide dismutase (MSD1) identical to manganese superoxide dismutase [Arabidopsis thaliana] gi|3273751|gb|AAC24832 (68416.m01317) 2492 Not regulated NC-NC-NC 256440_at At3g10970 haloacid dehalogenase-like hydrolase family protein low similarity to genetic modifier [Zea mays] GI: 10444400; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase (68416.m01322) 2493 Not regulated NC-NC-NC 256415_at At3g11210 GDSL-motif lipase/hydrolase family protein contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif (68416.m01362) 2494 Not regulated NC-NC-NC 256387_at At3g06170 TMS membrane family protein/tumour differentially expressed (TDE) family protein contains Pfam domain, PF03348: TMS membrane protein/tumour differentially expressed protein (TDE) (68416.m00709) 2495 Not regulated NC-NC-NC 256394_at At3g06290 SAC3/GANP family protein contains Pfam profile: PF03399 SAC3/GANP family (68416.m00722) 2496 Not regulated NC-NC-NC 256397_at At3g06110 dual specificity protein phosphatase family protein contains Pfam profile: PF00782 dual specificity phosphatase, catalytic domain (68416.m00701) 2497 Not regulated NC-NC-NC 256402_at At3g06130 heavy-metal-associated domain-containing protein contains Pfam heavy metal associated domain PF00403 (68416.m00704) 2498 Not regulated NC-NC-NC 256406_at At1g50710 expressed protein (68414.m05702) 2499 Not regulated NC-NC-NC 256411_at At1g66670 ATP-dependent Clp protease proteolytic subunit (ClpP3) identical to ATP-dependent Clp protease (nClpP3) GI: 5360591 [Arabidopsis thaliana] (68414.m07577) 2500 Not regulated NC-NC-NC 256385_at At1g66530 arginyl-tRNA synthetase, putative/arginine-tRNA ligase, putative similar to SP|P37880 Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine-tRNA ligase) (ArgRS) {Cricetulus longicaudatus}; contains Pfam profiles PF00750: arginyl-tRNA synthetase, PF03485: arginyl-tRNA synthetase N-terminal domain (68414.m07559) 2501 Not regulated NC-NC-NC 256366_at At1g66880 serine/threonine protein kinase family protein contains protein kinase domain, Pfam: PF00069; contains serine/threonine protein kinase domain, INTERPRO: IPR002290 (68414.m07601) 2502 Not regulated NC-NC-NC 256373_at At1g66740 ASF1-like anti-silencing protein, putative similar to SP|P32447 Anti-silencing protein 1 (Saccharomyces cerevisiae); contains Pfam profile PF04729: Anti-silencing protein, ASF1-like; supporting cDNA gi|27530935|dbi|AB078339.1|(68414.m07586) 2503 Not regulated NC-NC-NC 256380_at At1g66680 S locus-linked protein, putative similar to S locus-linked protein SLL2 [Brassica napus] GI: 1518113 (68414.m07579) 2504 Not regulated NC-NC-NC 256327_at At3g02350 glycosyl transferase family 8 protein contains Pfam profile: PF01501 glycosyl transferase family 8 (68416.m00218) 2505 Not regulated NC-NC-NC 256329_at At1g76850 expressed protein (68414.m08943) 2506 Not regulated NC-NC-NC 256333_at At1g76860 small nuclear ribonucleoprotein, putative/snRNP, putative/Sm protein, putative similar to SWISS-PROT: Q9Y4Z1 U6 snRNA- associated Sm-like protein LSm3 (MDS017) [Mouse] (68414.m08944) 2507 Not regulated NC-NC-NC 256338_at At1g72030 GCN5-related N-acetyltransferase (GNAT) family protein contains Pfam profile PF00583: acetyltransferase, GNAT family (68414.m08326) 2508 Not regulated NC-NC-NC 256342_at At1g72020 expressed protein (68414.m08325) 2509 Not regulated NC-NC-NC 256343_at At1g72090 radical SAM domain-containing protein/TRAM domain-containing protein contains Pfam profiles PF00919: UPF0004 family protein, PFD4055: radical SAM domain protein, PF01938: TRAM domain (68414.m08333) 2510 Not regulated NC-NC-NC 256351_at At1g54960 NPK1-related protein kinase, putative (ANP2) similar to protein kinase [Nicotiana tabacum] gi|456309|dbj|BAA05648; identical to cDNA NPK1-related protein kinase 2, partial cds GI: 2342424 (68414.m06277) 2511 Not regulated NC-NC-NC 256353_at At1g55000 peptidoglycan-binding LysM domain-containing protein contains Pfam profile PF01476: LysM domain (68414.m06282) 2512 Not regulated NC-NC-NC 256294_at At1g69450 early-responsive to dehydration protein-related/ERD protein-related low similarity to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI: 15375406; contains Pfam profile PF02714: Domain of unknown function DUF221 (68414.m07980) 2513 Not regulated NC-NC-NC 256301_at At1g69510 expressed protein (68414.m07967) 2514 Not regulated NC-NC-NC 256309_at At1g30380 photosystem I reaction center subunit psaK, chloroplast, putative/photosystem I subunit X, putative/PSI-K putative (PSAK) identical to SP|Q9SUI5; strong similarity to SP|P36886 Photosystem I reaction center subunit psaK, chloroplast precursor (Photosystem I subunit X) (PSI-K) (Light-harvesting complex I 7 kDa protein){Hordeum vulgare}; contains Pfam profile PF01241: Photosystem I psaG/psaK (68414.m03714) 2515 Not regulated NC-NC-NC 256286_at At3g12180 comidron family protein contains Pfam profile: PF03311 comichon protein (68416.m01519) 2516 Not regulated NC-NC-NC 256288_at At3g12270 protein arginine N-methyltransferase family protein similar to protein arginine N-methyltransferase 3 from {Rattus norvegicus} SP|O70467, {Homo sapiens} SP|O60678 (68416.m01532) 2517 Not regulated NC-NC-NC 256291_at At3g12200 protein kinase family protein contains protein kinase domain, Pfam: PF00069; contains serine/threonine protein kinase domain. INTERPRO: IPR002290 (68416.m01521) 2518 Not regulated NC-NC-NC 256263_at At3g17290 tetrahydrofolate dehydrogenase/cyclohydrolase, putative similar to SP|P07245 C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF synthase) [Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate synthetase (EC 6.3.4.3)] {Saccharomyces cerevisiae}; contains Pfam profiles PF02882: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain, PF00763: Tetrahydrofolata dehydrogenase/cyclohydrolase, catalytic domain (68416.m01534) 2519 Not regulated NC-NC-NC 256267_at At3g12260 complex 1 family protein/LVR family protein contains Pfam PF05347: Complex 1 protein (LYR family) (68416.m01531) 2520 Not regulated NC-NC-NC 256268_at At3g12280 retinoblastoma-related protein (RBR1) nearly identical to retinoblastoma-related protein [Arabidopsis thaliana] GI: 8777927; contains Pfam profiles: PF01858 retinoblastoma-associated protein A domain, PF01857 retinoblastoma-associated protein B domain (68416.m01533) 2521 Not regulated NC-NC-NC 256270_at At3g12300 expressed protein (68416.m01535) 2522 Not regulated NC-NC-NC 256272_at At3g12100 cation efflux family protein/metal tolerance protein, putative member of the cation diffusion facilitator (CDF) family, or cation efflux (CE) family, PMID: 11500563 (68416.m01506) 2523 Not regulated NC-NC-NC 256273_at At3g12090 senescence-associated family protein similar to senescence-associated protein 5 [Hemerocallis hybrid cultivar] gi|3551954|gb|AAC34855 (68416.m01505) 2524 Not regulated NC-NC-NC 256279_at At3g12620 protein phosphatase 2C family protein/PP2C family protein similar to Ser/Thr protein phosphatase 2C (PP2C6) (GI: 15020818) [Arabidopsis thaliana]; similar to protein phosphatase 2C (GI: 3608412) [Mesembryanthemum crystallinum]; contains Pfam PF00481: Protein phosphatase 2C domain; (68416.m01571) 2525 Not regulated NC-NC-NC 256258_at At3g12480 transcription factor, putative (68416.m01553) 2526 Not regulated NC-NC-NC 256232_at At3g12570 expressed protein (68416.m01564) 2527 Not regulated NC-NC-NC 256233_at At3g12360 ankyrin repeat family protein contains ankyrin repeat domains, Pfam: PF00023 (68416.m01541) 2528 Not regulated NC-NC-NC 256234_at At3g12370 ribosomal protein L10 family protein similar to 50S ribosomal protein L10 [Oryza sativa] GB: AAC64971 GI: 3777602 [Oryza sativa] (68416.m01542) 2529 Not regulated NC-NC-NC 256235_at At3g12490 cysteine protease inhibitor, putative/cystatin, putative similar to PRLI-interacting factor M [Arabidopsis thaliana] GI: 11139270, cysteine proteinase inhibitor [Brassica rapa] GI: 762785; contains Pfam profile PF00031: Cystatin domain (68416.m01554) 2530 Not regulated NC-NC-NC 256236_at At3g12350 F-box family protein; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1: At5g67250 (68418.m01540) 2531 Not regulated NC-NC-NC 256238_at At3g12400 tumour susceptibility gene 101 (TSG101) family protein contains Pfam profile PF05743: Tumour susceptibility gene 101 protein (TSG101); similar to Tumor susceptibility gene 101 protein (Swiss-Prot: Q99816) [Homo sapiens] (68416.m01545) 2532 Not regulated NC-NC-NC 256241_at At3g12390 nascent polypeptide associated complex alpha chain protein, putative/alpha-NAC, putative similar to alpha-NAC, non-muscle form [Mus musculus] GI: 1666690; contains Pfam profiles PF01849: NAC domain, PF00627: UBA/TS-N domain (68416.m01544) 2533 Not regulated NC-NC-NC 256242_at At3g12380 actin/actin-like family protein similar to SP|P53946 Actin-like protein ARP5 {Saccharomyces cerevisiae}; contains Pfam profile PF00022: Actin (68416.m01543) 2534 Not regulated NC-NC-NC 256249_at At3g11270 26S proteasome non-ATPase regulatory subunit 7, putative/26S proteasome regulatory subunit S12, putative/MOV34 protein, putative contains similarity to 26S proteasome regulatory subunit S12 (MOV34) SP: P26516 from [Mus musculus] (68416.m01370) 2535 Not regulated NC-NC-NC 256252_at At3g11340 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase (68416.m01379) 2536 Not regulated NC-NC-NC 256253_at At3g11250 60S acidic ribosomal protein P0 (RPP0C) similar to 60S acidic ribosomal protein P0 GI: 2088654 [Arabidopsis thaliana] (68416.m01368) 2537 Not regulated NC-NC-NC 256255_at At3g11280 myb family transcription factor contains Pfam profile: PF00249 Myb-like DNA-binding domain (68416.m01371) 2538 Not regulated NC-NC-NC 256256_at At3g11230 yippee family protein similar to qdgl-1 [Cotumix cotumix] GI: 10441650, Yippee protein [Homo sapiens] GI: 5713281; contains Pfam profile PF03226: Yippee putative zinc-binding protein (68416.m01366) 2539 Not regulated NC-NC-NC 256229_at At1g58200 mechanosensitive ion channel domain-containing protein/MS ion channel domain-containing protein contains Pfam profile PF00924: Mechanosensitive ion channel (68414.m06606) 2540 Not regulated NC-NC-NC 256209_at At1g50940 electron transfer flavoprotein alpha subunit family protein contains Pfam profile: PF00766 electron transfer flavoprotein, alpha subunit (68414.m05727) 2541 Not regulated NC-NC-NC 256215_at At1g50900 expressed protein (68414.m05723) 2542 Not regulated NC-NC-NC 256217_at At1g56320 expressed protein (68414.m06474) 2543 Not regulated NC-NC-NC 256223_at At1g56200 expressed protein (68414.m06459) 2544 Not regulated NC-NC-NC 256169_at At1g51800 leucine-rich repeat protein kinase, putative similar to light repressible receptor protein kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376; contains leucine rich repeat (LRR) domains, Pfam: PF00560; contains protein kinase domain, Pfam: PF00069 (68414.m05837) 2545 Not regulated NC-NC-NC 256170_at At1g51790 leucine-rich repeat protein kinase, putative smilar to light repressible receptor protein kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376; contains leucine rich repeat (LRR) domains, Pfam: PF00560; contains protein kinase domain, Pfam: PF00069 (68414.m05836) 2546 Not regulated NC-NC-NC 256173_at At1g51730 RWD domain-containing protein contains Pfam profile PF05773: RWD domain; similar to GCN2 elF2alpha kinase (GI: 6086585) [Mus musculus]; similar to GCN2beta (GI: 10764163) [Mus musculus]; similar to RING finger protein 25 (RING finger protein AO7) (Swiss-Prot: Q9QZR0) [Mus musculus]; similar to RING finger protein 25 (Swiss-Prot: Q96BH1) [Homo sapiens] (68414.m05829) 2547 Not regulated NC-NC-NC 256179_at At1g51710 ubiquitin-specific protease 6, putative (UBP6) similar to GI: 11993465 (68414.m05827) 2548 Not regulated NC-NC-NC 256184_at At1g51650 ATP synthase epsilon chain, mitochondrial identical to ATP synthase epsilon chain, mitochondrial SP: Q96253 from [Arabidopsis thaliana] (68414.m05819) 2549 Not regulated NC-NC-NC 256191_at At1g30130 expressed protein similar to hypothetical protein GI: 1469227 from [Brassica oleracea] (68414.m03682) 2550 Not regulated NC-NC-NC 256160_at At1g30120 pyruvate dehydrogenase E1 component beta subunit, chloroplast identical to pyruvate dehydrogenase E1 beta subunit [Arabidopsis thaliana] GI: 2454184; identical to cDNA pyruvate dehydrogenase E1 beta subunit mRNA, nuclear gene encoding plastid protein GI: 2454183 (68414.m03681) 2551 Not regulated NC-NC-NC 256142_at At1g48790 mov34 family protein similar to AMSH [Homo sapiens] GI: 4098124; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family (68414.m05460) 2552 Not regulated NC-NC-NC 256143_at At1g48830 40S ribosomal protein S7 (RPS7A) similar to 40S ribosomal protein S7 homolog GI: 5532505 from [Brassica oleracea] (68414.m05464) 2553 Not regulated NC-NC-NC 256145_at At1g48750 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to TED4 [Zinnia elegans] GI: 493721; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 (68414.m05455) 2554 Not regulated NC-NC-NC 256149_at At1g55110 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type (68414.m06294) 2555 Not regulated NC-NC-NC 256152_at At1g55150 DEAD box RNA helicase, putative (RH20) similar to ethylene-responsive RNA helicase GI: 5669638 from [Lycopersicon esculentum]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain (68414.m06298) 2556 Not regulated NC-NC-NC 256158_at At1g13590 phytosulfokines-related similar to SP|Q9AR88 Phytosulfokines 4 precursor [Contains: Phytosulfokine-alpha (PSK-alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] {Oryza sativa} (68414.m01593) 2557 Not regulated NC-NC-NC 256134_at At1g13560 aminoalcoholphosphotransferase (AAPT1) identical to aminoalcoholphosphotransferase GI: 3661593 from [Arabidopsis thaliana] (68414.m01589) 2558 Not regulated NC-NC-NC 256106_at At1g16870 mitochondrial 28S ribosomal protein S29-related contains weak similarity to Swiss-Prot: P51398 mitochondrial 28S ribosomal protein S29 (MRP-S29, Death-associated protein 3, DAP-3) [Homo sapiens] (68414.m02037) 2559 Not regulated NC-NC-NC 256112_at At1g16920 Ras-related GTP-binding protein, putative similar to GTP binding protein GI: 218228 from [Vicia faba]; identical to cDNA small GTP- binding protein (Rab11) GI: 451859 (68414.m02051) 2560 Not regulated NC-NC-NC 256113_at At1g16810 expressed protein (68414.m02019) 2561 Not regulated NC-NC-NC 256115_at At1g16880 uridylyltransferase-related similar to [Protein-PII] uridylyltransferase (PII uridylyl-transferase) (Uridylyl removing enzyme) (UTase)(SP: Q9AC53) [Caulobacter crescentus] (68414.m02039) 2562 Not regulated NC-NC-NC 256117_at At1g16840 expressed protein (68414.m02025) 2563 Not regulated NC-NC-NC 256118_at At1g16970 Ku70-like protein identical to Ku70-like protein GI: 12006424 from [Arabidopsis thaliana]; contains Pfam profiles PF03731: Ku70/Ku80 N-terminal alpha/beta domain, PF02735: Ku70/Ku80 beta-barrel domain, PF03730: Ku70/Ku80 C-terminal arm, and PF02037: SAP domain; contains TIGRfam profile TIGR00578: ATP-dependent DNA helicase ii, 70 kDa subunit (68414.m02061) 2564 Not regulated NC-NC-NC 256119_at At1g18070 EF-1-alpha-related GTP-binding protein, putative similar to EF-1-alpha-related GTP-binding protein gi|1009232|gb|AAA79032 (68414.m02236) 2565 Not regulated NC-NC-NC 256121_at At1g18160 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain (68414.m02256) 2566 Not regulated NC-NC-NC 256125_at At1g18250 thaumatin, putative identical to SP|P50699 Thaumatin-like protein precursor (Arabidopsis thaliana); strong similarity to pathogenesis-related group 5 protein GI: 2749943 from [Brassica rapa] (68414.m02276) 2567 Not regulated NC-NC-NC 256129_at At1g18210 calcium-binding protein, putative similar to SP|Q9M7R0 Calcium-binding allergen Ole e 8 (PCA18/PCA23) {Olea europaea}; contains INTERPRO: IPR002048 calcium-binding EF-hand domain (68414.m02266) 2568 Not regulated NC-NC-NC 256075_at At1g18150 mitogen-activated protein kinase, putative/MAPK, putative (MPK8) identical to ATMPK8 [Arabidopsis thaliana] gi|7106542|dbj|BAA92222; mitogen-activated protein kinase (MAPK), PMID: 12119167; similar to mitogen-activated protein kinase GI: 5815410 from (Oryza sativa) (68414.m02252) 2569 Not regulated NC-NC-NC 256086_at At1g20770 expressed protein (68414.m02601) 2570 Not regulated NC-NC-NC 256088_at At1g20810 immunophilin/FKBP-type peptidyl-prolyl cis-trans isomerase family protein identical to Probable FKBP-type peptidyl-prolyl cis-trans isomerase 1, chloroplast precursor (Ppiase) (Rotamase) (SP: Q9LM71)[Arabidopsis thaliana]; similar to SP|P25138 FK506-binding protein (Peptidyl-prolyl cis-trans isomerase) (PPiase) (EC 5.2.1.8) (Rotamase) {Neisseria meningitidis}; contains Pfam PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type (68414.m02606) 2571 Not regulated NC-NC-NC 256091_at At1g20693 high mobility group protein beta1 (HMGbeta1)/HMG protein beta1 nearly identical to HMG protein (HMGbeta1) [Arabidopsis thaliana] GI: 2832359 (68414.m02592) 2572 Not regulated NC-NC-NC 256092_at At1g20696 high mobility group protein beta2 (HMGbeta2)/HMG protein beta2 nearly identical to HMG protein (HMGbeta2) [Arabidopsis thaliana] GI: 2832361 (68414.m02593) 2573 Not regulated NC-NC-NC 256097_at At1g13670 expressed protein (68414.m01607) 2574 Not regulated NC-NC-NC 256068_at At1g13690 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif (68414.m01609) 2575 Not regulated NC-NC-NC 256041_at At1g07230 phosphoesterase family protein low similarity to SP|P95246 Phospholipase C 2 precursor (EC 3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam profile PF04185: Phosphoesterase family (68414.m00769) 2576 Not regulated NC-NC-NC 256043_at At1g07210 30S ribosomal protein S18 family contains Pfam profile: PF01084 ribosomal protein S18; similar to 30S ribosomal protein S18 (SP: P80382) {Thermus thermophilus} (68414.m00767) 2577 Not regulated NC-NC-NC 256045_at At1g07150 protein kinase family protein contains eukaryotic protein kinase domain, INTERPRO: IPR000719 (68414.m00761) 2578 Not regulated NC-NC-NC 256057_at At1g07180 pyridine nucleotide-disulphide oxidoreductase family protein contains similarity to alternative NADH-dehydrogenase GI: 3718005 from [Yarrowia lipolytica]. SP|P32340 Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor (EC 1.6.5.3) (Internal NADH dehydrogenase) {Saccharomyces cerevisiae}; contains Pfam profile PF00070: Pyridine nucleotide-disulphide oxidoreductase (68414.m00764) 2579 Not regulated NC-NC-NC 256058_at At1g07240 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase (68414.m00770) 2580 Not regulated NC-NC-NC 256064_at At1g07020 expressed protein (68414.m00747) 2581 Not regulated NC-NC-NC 256065_at At1g07070 60S ribosomal protein L35a (RPL35aA) similar to ribosomal protein L35a GI: 57118 from [Rattus norvegicus] (68414.m00753) 2582 Not regulated NC-NC-NC 256067_at At1g07170 expressed protein contains Pfam domain PF03660: Uncharacterised protein family (UPF0123) (68414.m00763) 2583 Not regulated NC-NC-NC 256033_at At1g07250 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucose glucosyltransferase GI: 453245 from [Manihot esculenta] (68414.m00771) 2584 Not regulated NC-NC-NC 256034_at At1g07080 gamma interferon responsive lysosomal thiol reductase family protein/GILT family protein similar to SP|P13284 Gamma-interferon inducible lysosomal thiol reductase precursor {Homo sapiens}; contains Pfam profile PF03227: Gamma interferon inducible lysosomal thiol reductase (GILT) (68414.m00754) 2585 Not regulated NC-NC-NC 256035_at At1g07140 Ran-binding protein 1a (RanBP1a) identical to Ran-binding protein (atranbp1a) GI: 2058282 from [Arabidopsis thaliana] (68414.m00760) 2586 Not regulated NC-NC-NC 256036_at At1g07110 fructose-6-phosphata 2-kinase/fructose-2,6-bisphosphatase (F2KP) identical to fructose-6-phosphate 2-kinase/fructose-2,6- bisphosphatase (F2KP) [Arabidopsis thaliana] GI: 13096098 (68414.m00756) 2587 Not regulated NC-NC-NC 256015_at At1g19150 chlorophyll A-B binding protein, putative/LHCI type II, putative very strong similarity to PSI type II chlorophyll a/b-binding protein Lhca2*1 GI: 541565 from [Arabidopsis thaliana]; contains Pfam profile: PF00504 chlorophyll A-B binding protein (68414.m02384) 2588 Not regulated NC-NC-NC 256016_at At1g19240 expressed protein (68414.m02394) 2589 Not regulated NC-NC-NC 256022_at At1g58360 amino acid permease I (AAP1) identical to amino acid permease I GI: 22641 from [Arabidopsis thaliana] (68414.m06638) 2590 Not regulated NC-NC-NC 255979_at At1g33980 Smg-4/UPF3 family protein contains Pfam PF03467: Smg-4/UPF3 family; similar to hUPF3B (GI: 12232324) [Homo sapiens] (68414.m04213) 2591 Not regulated NC-NC-NC 255981_at At1g34020 transporter-related low similarity to UDP-sugar transporter [Drosophila melanogaster] GI: 14971008, UDP-glucuronic acid transporter [Homo sapiens] GI: 11463949 (68414.m04218) 2592 Not regulated NC-NC-NC 255982_at At1g34000 light stress-responsive one-helix protein (OHP2) contains similarity to photosystem II 22 kDa protein GI: 6006279 from [Arabidopsis thaliana] (68414.m04215) 2593 Not regulated NC-NC-NC 255983_at At1g33990 hydrolase, alpha/beta fold family protein similar to polyneuridine aldehyde esterase GI: 6651393 from [Rauvolfia serpentina], SP|Q40708 PIR7A protein {Oryza sativa}, ethylene-induced esterase [Citrus sinensis] GI: 14279437; contains Pfam profile PF00561: hydrotase, alpha/beta fold family (68414.m04214) 2594 Not regulated NC-NC-NC 255992_at At1g29790 expressed protein (68414.m03642) 2595 Not regulated NC-NC-NC 255994_at At1g29760 expressed protein (68414.m03639) 2596 Not regulated NC-NC-NC 255997_s_at At1g29910 chlorophyll A-B binding protein 2, chloroplast/LHCII type I CAB-2/CAB-140 (CAB2A) identical to SP|P04776 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} (68414.m03655) 2597 Not regulated NC-NC-NC 255946_at At1g22020 glycine hydroxymethyltransferase, putative/serine hydroxymethyltransferase, putative/serine/threonine aldolase, putative similar to serine hydroxymathyltransferase [Chlamydomonas reinhardtii] GI: 17066746; contains Pfam profile PF00464: serine hydroxymethyltransferese (68414.m02755) 2598 Not regulated NC-NC-NC 255960_at At1g22140 expressed protein (68414.m02767) 2599 Not regulated NC-NC-NC 255966_at At1g22300 14-3-3 protein GF14 epsilon (GRF10) identical to 14-3-3 protein GF14 epsilon GI: 5802798, SP: P48347 from [Arabidopsis thaliana] (68414.m02788) 2600 Not regulated NC-NC-NC 255967_at At1g22280 protein phosphatase 2C, putative/PP2C, putative similar to protein phosphatase type 2C GI: 4336436 from [Lotus japonicus] (68414.m02785) 2601 Not regulated NC-NC-NC 255921_at At1g22240 pumilio/Puf RNA-binding domain-containing protein contains Pfam profile: PF00806 pumilio-family RNA binding domain (68414.m02780) 2602 Not regulated NC-NC-NC 255925_at At1g22200 expressed protein (68414.m02776) 2603 Not regulated NC-NC-NC 255926_at At1g22190 AP2 domain-containing transcription factor, putative similar to AP2 domain containing protein RAP2.4 GI: 2281633 from [Arabidopsis thaliana] (68414.m02775) 2604 Not regulated NC-NC-NC 255928_at At1g12640 membrane bound O-acyl transferase (MBOAT) family protein low similarity to porcupine from [Xenopus laevis] GI: 6714514, GI: 6714520, GI: 6714518, GI: 6714516; contains Pfam profile PF03062: MBOAT family (68414.m01468) 2605 Not regulated NC-NC-NC 255933_at At1g12750 rhomboid family protein contains PFAM domain PF01694, Rhomboid family (68414.m01480) 2606 Not regulated NC-NC-NC 255936_at At1g12680 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68414.m01472) 2607 Not regulated NC-NC-NC 255940_at At1g20380 prolyl oligopeptidase, putative/prolyl endopeptidase, putative/post-proline cleaving enzyme, putative similar to SP|P48147 Prolyl endopeptidase (EC 3.4.21.26) (Post-proline cleaving enzyme) {Homo sapiens}; contains Pfam profiles PF00326: prolyl oligopeptidase family, PF02897: Prolyl oligopeptidase, N-terminal beta-propeller domain (68414.m02542) 2608 Not regulated NC-NC-NC 255886_at At1g20340 plastocyanin similar to plastocyanin GI: 1865683 from [Arabidopsis thaliana] (68414.m02538) 2609 Not regulated NC-NC-NC 255901_at At1g17890 GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase, putative similar to GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4- reductase (GER1)GI: 6016479 from [Arabidopsis thaliana] (68414.m02213) 2610 Not regulated NC-NC-NC 255902_at At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein/BTF3b-like transcription factor, putative similar to SP|P20290 Transcription factor BTF3 (RNA polymerase B transcription factor 3) {Homo sapiens}; contains Pfam profile PF01849: NAC domain; identical to cDNA BTF3b-like factor GI: 5912423 (68414.m02212) 2611 Not regulated NC-NC-NC 255908_s_at At1g18010 expressed protein contains 11 transmembrane domains; (68414.m02228) 2612 Not regulated NC-NC-NC 255881_at At1g67070 phosphomannose isomerase, putative (DIN9) contains Pfam profile: PF01238 phosphomannose isomerase type I; similar to phosphomannose isomerase GI: 10834550 from [Arabidopsis thaliana]; identical to cDNA phosphomannose isomerase (din9) partial cds GI: 10834549 (68414.m07627) 2613 Not regulated NC-NC-NC 255852_at At1g66970 glycerophosphoryl diester phosphodiesterase family protein contains Pfam PF03009: Glycerophosphoryl diester phosphodiesterase family (68414.m07615) 2614 Not regulated NC-NC-NC 255857_at At1g67080 expressed protein (68414.m07628) 2615 Not regulated NC-NC-NC 255858_at At1g67030 zinc finger (C2H2 type) family protein (ZFP6) identical to zinc finger protein, ZFP6 gi|790683|gb|AAA87302; contains Pfam domain, PF00096: Zinc finger, C2H2 type (68414.m07622) 2616 Not regulated NC-NC-NC 255869_at At2g30270 expressed protein contains Pfam profile PF04525: Protein of unknown function (DUF567) (68415.m03685) 2617 Not regulated NC-NC-NC 255871_at At2g30260 small nuclear ribonucleoprotein U2B, putative/spliceosomal protein, putative similar to spliceosomal protein [Solanum tuberosum] GI: 169589 (68415.m03684) 2618 Not regulated NC-NC-NC 255874_at At2g40550 expressed protein (68415.m05003) 2619 Not regulated NC-NC-NC 255822_at At2g40610 expansin, putative (EXP8) similar to expansin 2 GI: 7025493 from [Zinnia elegens]; alpha-expansin gene family, PMID: 11641069 (68415.m05009) 2620 Not regulated NC-NC-NC 255826_at At2g40490 uroporphyrinogen decarboxylase, putative/UPD, putative similar to uroporphyrinogen decarboxylase (chloroplast) from Nicotiana tabacum [SP|Q42967], Hordeum vulgare [SP|Q42855], Zea mays [SP|O81220]: contains Pfam domain uroporphyrinogen decarboxylase (URO-D) PF01208 (68415.m04997) 2621 Not regulated NC-NC-NC 255827_at At2g40600 appr-1-p processing enzyme family protein contains Pfam domain PF01661: Appr-1-p processing enzyme family (68415.m05008) 2622 Not regulated NC-NC-NC 255829_at At2g40540 potassium transporter, putative (KT2) identical to putative potassium transporter AtKT2p [Arabidopsis thaliana] gi|2384671|gb|AAC49845, strong similarity to potassium transporter HAK2p [Mesembryanthemum crystallinum] GI: 14091471; KUP/HAK/KT Transporter family member, PMID: 11500563 (68415.m05002) 2623 Not regulated NC-NC-NC 255830_at At2g33340 transducin family protein/WD-40 repeat family protein contains 5 WD-40 repeats (PF00400); similar to cell cycle control protein cwf8 (SP: O14011) [Schizosaccharomyces pombe (Fission yeast)] (68415.m04086) 2624 Not regulated NC-NC-NC 255845_at At2g33600 cinnamoyl-CoA reductase family similar to cinnamoyl-CoA reductase from Pinus taeda [GI: 17978649], Eucalyptus gunnii [GI: 2058311] (68415.m04118) 2625 Not regulated NC-NC-NC 255850_at At2g33450 50S ribosomal protein L28, chloroplast (CL28) (68415.m04100) 2626 Not regulated NC-NC-NC 255816_at At2g33470 glycolipid transfer protein-related similar to phosphoinositol 4-phosphate adaptor protein-2 (GI: 14165198) [Homo sapiens]; similar to Glycolipid transfer protein (GLTP) (Swiss-Prot: Q9JL62) [Mus musculus]; similar to Glycolipid transfer protein (GLTP) (Swiss- Prot: Q9NZD2) [Homo sapiens] (68415.m04102) 2627 Not regulated NC-NC-NC 255787_at At2g33590 cinnamoyl-CoA reductase family similar to cinnamoyl-CoA reductase from Pinus taeda [GI: 17978649], Eucalyptus gunnii [GI: 2058311] (68415.m04117) 2628 Not regulated NC-NC-NC 255788_at At2g33310 auxin-responsive protein/indoleacetic acid-induced protein 13 (IAA13) identical to SP|Q38831 Auxin-responsive protein IAA13 (Indoleacetic acid-induced protein 13) {Arabidopsis thaliana} (68415.m04082) 2629 Not regulated NC-NC-NC 255791_at At2g33430 plastid developmental protein DAG, putative similar to DAG protein, chloroplast precursor [Garden snapdragon] SWISS- PROT: Q38732 (68415.m04097) 2630 Not regulated NC-NC-NC 255792_at At2g33620 DNA-binding family protein/AT-hook protein 1 (AHP1) identical to AT-hook protein 1 [Arabidopsis thaliana] gi|2598227|emb|CAA10857 (68415.m04120) 2631 Not regulated NC-NC-NC 255793_at At2g33250 expressed protein (68415.m04073) 2632 Not regulated NC-NC-NC 255794_at At2g33480 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; (68415.m04104) 2633 Not regulated NC-NC-NC 255797_at At2g33630 3-beta hydroxysteroid dehydrogenese/isomerase family protein contains Pfam profile PF01073 3-beta hydroxysteroid dehydrogenase/isomerase domain; similar to NAD(P)-dependent cholesterol dehydrogenase [Nocardia sp.] [GI: 216809] (68415.m04123) 2634 Not regulated NC-NC-NC 255798_at At2g33255 haloacid dehalogenase-like hydrolase family protein contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase (68415.m04075) 2635 Not regulated NC-NC-NC 255799_at At4g10180 light-mediated development protein 1/deetiolated1 (DET1) identical to Light-mediated development protein DET1 (Deetiolated1) (Swiss-Prot: P48732) [Arabidopsis thaliana] (68417.m01668) 2636 Not regulated NC-NC-NC 255809_at At4g10300 expressed protein (68417.m01694) 2637 Not regulated NC-NC-NC 255810_at At4g10140 expressed protein (68417.m01659) 2638 Not regulated NC-NC-NC 255764_at At1g16720 expressed protein (68414.m02005) 2639 Not regulated NC-NC-NC 255766_at At1g16750 expressed protein contains Pfam profile PF04784: Protein of unknown function, DUF547 (68414.m02011) 2640 Not regulated NC-NC-NC 255776_at At1g18540 60S ribosomal protein L6 (RPL6A) similar to 60S ribosomal protein L6 GI: 7208784 from [Cicer arietinum] (68414.m02313) 2641 Not regulated NC-NC-NC 255777_at At1g18630 glycine-rich RNA-binding protein, putative similar to glycine-rich RNA-binding protein from {Sorghum bicolor} SP|Q99070, GI: 1778373 from [Pisum sativum]; contains InterPro entry IPR0C0504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68414.m02322) 2642 Not regulated NC-NC-NC 255778_at At1g18640 3-phosphoserine phosphatase (PSP) nearly identical to 3-phosphoserine phosphatase GI: 3759177 from [Arabidopsis thaliana] (68414.m02323) 2643 Not regulated NC-NC-NC 255779_at At1g18650 glycosyl hydrolase family protein 17 similar to beta-1,3-glucanase GI: 15150341 from [Camellia sinensis]; C-terminal homology only (68414.m02325) 2644 Not regulated NC-NC-NC 255725_at At1g25540 phytochrome and flowering time regulatory protein (PFT1) PMID: 12815435 (68414.m03171) 2645 Not regulated NC-NC-NC 255736_at At1g25380 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein (68414.m03150) 2646 Not regulated NC-NC-NC 255737_at At1g25420 expressed protein contains Pfam profile; PF03398 eukaryotic protein of unknown function, DUF292 (68414.m03155) 2647 Not regulated NC-NC-NC 255738_at At1g25570 leucine-rich repeat protein-related contains leucine rich-repeat (LRR) domains Pfam: PF00560, INTERPRO: IPR001611; contains some similarity to light repressible receptor protein kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376 (68414.m03174) 2648 Not regulated NC-NC-NC 255740_at At1g25390 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68414.m03152) 2649 Not regulated NC-NC-NC 255752_at At1g32050 secretory carrier membrane protein (SCAMP) family protein contains Pfam domain, PF04144: SCAMP family (68414.m03943) 2650 Not regulated NC-NC-NC 255718_at At1g32070 GCN5-related N-acetyltransferase (GNAT) family protein/nuclear shuttle interacting protein (NSI) very low similarity to SP|P09453 Ribosomal-protein-alanine acetyltransferase (EC 2.3.1.128) {Escherichia coli}; cantains Pfam profile PF00583: acetyltransferase, GNAT family; PMID 12837950; identical to cDNA nuclear shuttle interacting protein (NSI) GI: 30790420 (68414.m03945) 2651 Not regulated NC-NC-NC 255719_at At1g32080 membrane protein, putative contains 12 transmembrane domains; similar to yohK (GI: 405873) [Escherichia coli] (68414.m03947) 2652 Not regulated NC-NC-NC 255721_at At1g31940 expressed protein (68414.m03925) 2653 Not regulated NC-NC-NC 255696_at At4g00110 NAD-dependent epimerase/dehydratase family protein similar to nucleotide sugar epimerase from Vibrio vulnificus GI: 3093975 [PID: g3093975], WbnF [Escherichia coli] GI: 5739472, CAPI protein {Staphylococcus aureus} SP|P39858; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family (68417.m00011) 2654 Not regulated NC-NC-NC 255698_at At4g00150 scarecrow-like transcription factor 6 (SCL6) (68417.m00015) 2655 Not regulated NC-NC-NC 255704_at At4g00170 vesicle-associated membrane family protein/VAMP family protein similar to VAP27 GI: 6688926 [Nicotiana plumbaginifolia] (68417.m00016) 2656 Not regulated NC-NC-NC 255711_at At4g00090 transducin family protein/WD-40 repeat family protein similar to Transducin beta-like 2 protein (WS beta-transducin repeats protein) (WS-betaTRP) (Williams-Beuren syndrome chromosome region 13 protein) (SP: Q9Y4P3) {Homo sapiens} (68417.m00009) 2657 Not regulated NC-NC-NC 255714_at At4g00300 fringe-related protein + weak similarity to Fringe [Schistocerca gregaria](GI: 6573138): Fringe encodes an extracellular protein that regulates Notch signalling. (68417.m00037) 2658 Not regulated NC-NC-NC 255716_at At4g00330 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68417.m00042) 2659 Not regulated NC-NC-NC 255692_at At4g00400 phospholipid/glycerol acyltransferase family protein (68417.m00054) 2660 Not regulated NC-NC-NC 255683_at At4g00570 malate oxidoreductase, putative similar to NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor (EC 1.1.1.39) (NAD-ME) (SP: P37225) {Solanum tuberosum} (68417.m00080) 2661 Not regulated NC-NC-NC 255685_s_at At4g00600 tetrahydrofolate dehydrogenase/cyclohydrolase, putative similar to SP|P09440 C-1-tetrahydrofolate synthase, mitocrondrial precursor (C1-THF synthase) [Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate synthetase (EC 6.3.4.3) {Saccharomyces cerevisiae}; contains Pfam profiles PF02882: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain, PF00763: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain (68417.m00084) 2662 Not regulated NC-NC-NC 255630_at At4g00700 C2 domain-containing protein contains INTERPRO: IPR000008 C2 domain (68417.m00096) 2663 Not regulated NC-NC-NC 255633_at At4g00585 expressed protein (68417.m00082) 2664 Not regulated NC-NC-NC 255635_at At4g00720 shaggy-related protein kinase theta/ASK-theta (ASK8) identical to shaggy-related protein kinase theta (ASK-theta) [Arabidopsis thaliana] SWISS-PROT: Q96287 (68417.m00098) 2665 Not regulated NC-NC-NC 255645_at At4g00880 auxin-responsive family protein similar to small auxin up RNA (GI: 546362) {Arabidopsis thaliana} (68417.m00119) 2666 Not regulated NC-NC-NC 255657_at At4g00810 60S acidic ribosomal protein P1 (RPP1B) similar to acidic ribosomal protein p1 (68417.m00111) 2667 Not regulated NC-NC-NC 255628_at At4g00850 SSXT family protein low similarity to synovial sarcoma associated SS18-delta [Mus musculus] GI: 17978535; contains Pfam profile PF05030: SSXT protein (N-terminal region) (68417.m00116) 2668 Not regulated NC-NC-NC 255629_at At4g00860 stress-related ozone-induced protein (OZI1)/stress-related ozone-responsive protein identical to stress-related ozone-induced protein AtOZI1 (mRNA corresponding to this gene accumulates in response to ozone stress and pathogen (bacterial) infection); putative pathogenesis-related protein (GI: 790583) [Arabidopsis thaliana] (68417.m00117) 2669 Not regulated NC-NC-NC 255598_at At4g00830 RNA recognition motif (RRM)-containing protein similar to nucleolin protein; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68417.m00114) 2670 Not regulated NC-NC-NC 255600_s_at At5g10370 helicase domain-containing protein/IBR domain-containing protein/zinc finger protein-related similar to RNA-dependent ATPase/helicase Cdc28p [Schizosaccharomyces pombe] GI: 1439562; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain, weak hit to PF00097: Zinc finger, C3HC4 type (RING finger), PF01485: IBR domain (68418.m01203) 2671 Not regulated NC-NC-NC 255603_at At4g01040 glycosyl hydrolase family 18 protein contains Pfam profile PF00704: Glycosyl hydrolases family 18 (68417.m00141) 2672 Not regulated NC-NC-NC 255614_at At4g01280 myb family transcription factor contains PFAM profile: PF00249 myb-like DNA binding domain (68417.m00169) 2673 Not regulated NC-NC-NC 255617_at At4g01330 protein kinase family protein contains protein kinase domain, Pfam: PF00069; contains serine/threonine protein kinase domain, INTERPRO: IPR002290 (68417.m00173) 2674 Not regulated NC-NC-NC 255623_at At4g01310 ribosomal protein L5 family protein contains Pfam profiles PF00673: ribosomal L5P family C-terminus, PF00281: ribosomal protein L5 (68417.m00171) 2675 Not regulated NC-NC-NC 255624_at At4g01370 mitogen-activated protein kinase, putative/MAPK, putative (MPK4) identical to mitogen-activated protein kinase homolog (AtMPK4)[Arabidopsis thaliana] SWISS-PROT: Q39024; PMID: 12119167 (68417.m00177) 2676 Not regulated NC-NC-NC 255567_at At4g01150 expressed protein (68417.m00153) 2677 Not regulated NC-NC-NC 255569_at At4g01320 CAAX protease, putative (STE24) contains Pfam domain, PF01435: Peptidase family M48 (68417.m00172) 2678 Not regulated NC-NC-NC 255570_at At4g01100 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein (68417.m00148) 2679 Not regulated NC-NC-NC 255572_at At4g01050 hydroxyproline-rich glycoprotein family protein (68417.m00142) 2680 Not regulated NC-NC-NC 255575_at At4g01430 nodulin MtN21 family protein similar to MtN21 GI: 2598575 (root nodule development) from [Medicago truncatula] (68417.m00183) 2681 Not regulated NC-NC-NC 255578_at At4g01450 nodulin MtN21 family protein similar to MtN21 GI: 2598575 (root nodule development) from [Medicago truncatula] (68417.m00186) 2682 Not regulated NC-NC-NC 255585_at At4g01550 no apical meristem (NAM) family protein similar to NAC1 (GI: 7716952) {Medicago truncatula}; contains Pfam PF02365: No apical meristem (NAM) protein (68417.m00201) 2683 Not regulated NC-NC-NC 255586_at At4g01560 brix domain-containing protein contains Pfam domain, PF04427: Brix domain (68417.m00202) 2684 Not regulated NC-NC-NC 255587_at At4g01480 inorganic pyrophosphatase, putative [soluble]/pyrophosphate phospho-hydrolase, putative/PPase, putative strong similarity to SP|Q43187 Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho-hydrolase) (PPase) {Solanum tuberosum}; contains Pfam profile PF00719: inorganic pyrophosphatase (68417.m00191) 2685 Not regulated NC-NC-NC 255590_at At4g01610 cathepsin B-like cysteine protease, putative similar to cathepsin B-like cysteine protainase GI: 609175 from [Nicotiana rustica]; contains an unusually short, 5nt exon (68417.m00210) 2686 Not regulated NC-NC-NC 255594_at At4g01660 ABC1 family protein contains Pfam domain, PF03109: ABC1 family (68417.m00216) 2687 Not regulated NC-NC-NC 255597_at At4g01730 zinc finger (DHHC type) family protein contains Pfam profile PF01529: DHHC zinc finger domain (68417.m00224) 2688 Not regulated NC-NC-NC 255537_at At4g01690 protoporphyrinogen oxidase (PPOX) identical to SP|P55826 (68417.m00219) 2689 Not regulated NC-NC-NC 255552_at At4g01850 S-adenosylmethionine synthetase 2 (SAM2) identical to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2, AdoMet synthetase 2) [Arabidopsis thaliana] SWISS-PROT: P17582 (68417.m00242) 2690 Not regulated NC-NC-NC 255553_at At4g01960 expressed protein (68417.m00261) 2691 Not regulated NC-NC-NC 255556_at At4g01940 nitrogen fixation NifU-like family protein similar to apricot NifU homolog partial CDS, GenBank accession number U95179; contains Pfam profile: PF01106 NifU-like domain (68417.m00259) 2692 Not regulated NC-NC-NC 255560_at At4g02030 expressed protein (68417.m00273) 2693 Not regulated NC-NC-NC 255561_at At4g02050 sugar transporter, putative similar to SP|Q10710 Sugar carrier protein A {Ricinus communis}, glucose transporter [Seccharum hybrid cultivar H65-7052] GI: 347855; contains Pfam profile PF00083: major facilitator superfamily protein (68417.m03275) 2694 Not regulated NC-NC-NC 255529_at At4g02120 CTP synthase, putative/UTP-ammonia ligase, putative similar to SP|P17812 CTP synthase (EC 6.3.4.2) (UTP-ammonia ligase) {Homo sapiens}; contains Pfam profile PF00117: glutamine amidotransferase class-I (68417.m00283) 2695 Not regulated NC-NC-NC 255505_at At4g02080 GTP-binding protein (SAR1A) identical to SP: O04834 GTP-binding protein SAR1A. [Arabidopsis thaliana] (68417.m00279) 2696 Not regulated NC-NC-NC 255516_at At4g02270 pollen Ole e 1 allergen and extensin family protein contains Pfam domain, PF01190: Pollen proteins Ole e I family (68417.m00308) 2697 Not regulated NC-NC-NC 255525_at At4g02340 epoxide hydrolase, putative similar to epoxide hydrolases from Glycine max GI: 2764806, Solanum tuberosum GI: 407938; contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68417.m00316) 2698 Not regulated NC-NC-NC 255526_at At4g02350 exocyst complex subunit Sec15-like family protein contains Pfam profile PF04091: Exocyst complex subunit Sec15-like (68417.m00319) 2699 Not regulated NC-NC-NC 255473_at At4g02450 glycine-rich protein similar to several proteins containing a tandem repeat region such as Plasmodium falciparum GGM tandem repeat protein (GB: U27807) (68417.m00332) 2700 Not regulated NC-NC-NC 255477_at At4g02370 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538 (68417.m00321) 2701 Not regulated NC-NC-NC 255478_at At4g02440 F-box family protein to circadian clock coupling factor ZGT (GP|14210079) {Nicotiana tabacum}; contains Pfam PF00646: F-box domain (68417.m00331) 2702 Not regulated NC-NC-NC 255484_at At4g02540 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain (68417.m00347) 2703 Not regulated NC-NC-NC 255495_at At4g02720 expressed protein temporary automated functional assignment (68417.m00368) 2704 Not regulated NC-NC-NC 255498_at At4g02620 vacuolar ATPase subunit F family protein contains weak similarity to vacuolar ATP synthase subunit F (EC 3.6.3.14) (V-ATPase F subunit) (Vacuolar proton pump F subunit) (V-ATPase 14 kDa subunit) (Swiss-Prot: P50408) [Rattus norvegicus]; contains Pfam PF01990: ATP synthase (F/14-kDa) subunit (68417.m00356) 2705 Not regulated NC-NC-NC 255442_at At4g02580 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative similar to NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Polypeptide II) (Swiss-Prot: P04394) [Bos taurus] (68417.m00352) 2706 Not regulated NC-NC-NC 255447_at At4g02790 GTP-binding family protein contains Pfam domain, PF01926: GTPase of unknown function (68417.m00379) 2707 Not regulated NC-NC-NC 255448_at At4g02810 expressed protein (68417.m00381) 2708 Not regulated NC-NC-NC 255451_at At4g02880 phenazine biosynthesis PhzC/PhzF family protein contains Pfam profile: PF02567 phenazine biosynthesis-like protein (68417.m00386) 2709 Not regulated NC-NC-NC 255457_at At4g02770 photosystem I reaction center subunit II, chloroplast, putative/photosystem I 20 kDa subunit, putative/PSI-D, putative (PSAD1) similar to SP|P12353 Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D) {Spinacia oleracea}; contains Pfam profile PF02531: PsaD (68417.m00377) 2710 Not regulated NC-NC-NC 255458_at At4g02840 small nuclear ribonucleoprotein D1, putative/snRNP core protein D1, putative/Sm protein D1, putative similar to small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1, Sm-D1, Sm-D autoantigen) [Mouse] SWISS-PROT: P13841 (68417.m00384) 2711 Not regulated NC-NC-NC 255462_at At4g02940 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to A. thaliana hypothetical protein T13L16.2, GenBank accession number 2708738; contains Pfam domain PF03171 2OG-Fe(II) oxygenase superfamily (68417.m00401) 2712 Not regulated NC-NC-NC 255465_at At4g02990 mitochondrial transcription termination factor family protein/mTERF family protein weak similarity to mtDBP protein [Paracentrotus lividus] GI: 4584695; contains Pfam profile PF02536: mTERF (68417.m00406) 2713 Not regulated NC-NC-NC 255468_at At4g03020 transducin family protein/WD-40 repeat family protein contains 6 WD-40 repeats (PF00400); similar to L. erythrorhizon LEC14B. GenBank accession number Q40153 (68417.m00410) 2714 Not regulated NC-NC-NC 255469_at At4g03030 kelch repeat-containing F-box family protein contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain (68417.m00411) 2715 Not regulated NC-NC-NC 255411_at At4g03110 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI: 7870536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI: 15341327, CUG-BP and ETR-3 like factor 3 [Homo sapiens] GI: 12746392; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68417.m00420) 2716 Not regulated NC-NC-NC 255412_at At4g02980 auxin-binding protein 1 (ABP1) identical to Auxin-binding protein 1 precursor (ABP) (Swiss-Prot: P33487) [Arabidopsis thaliana] (68417.m00405) 2717 Not regulated NC-NC-NC 255420_at At4g03240 frataxin protein-related contains weak similarity to Frataxin, mitochondrial precursor (Friedreich's ataxia protein) (Fxn) (Swiss- Prot: Q16595) [Homo sapiens] (68417.m00443) 2718 Not regulated NC-NC-NC 255431_at At4g03120 proline-rich family protein similar to U1 small nuclear ribonucleoprotein C; contains proline rich extensin domains, INTERPRO: IPR002965 (68417.m00425) 2719 Not regulated NC-NC-NC 255435_at At4g03280 cytochrome B6-F complex iron-sulfur subunit, chloroplast/Rieske iron-sulfur protein/plastoquinol-plastocyanin reductase (petC) identical to gi: 9843639; identical to cDNA riesks iron-sulfur protein precursor (petC) GI: 5725449 (68417.m00447) 2720 Not regulated NC-NC-NC 255379_at At4g03520 thioredoxin M-type 2, chloroplast (TRX-M2) nearly identical to SP|Q9SEU8 Thioredoxin M-type 2, chloroplast precursor (TRX-M2) {Arabidopsis thaliana} (68417.m00480) 2721 Not regulated NC-NC-NC 255380_at At4g03560 two-pore calcium channel (TPC1) identical to two-pore calcium channel (TPC1) [Arabidopsis thaliana] gi|14041819|dbj|BAB55460 (68417.m00488) 2722 Not regulated NC-NC-NC 255382_at At4g03430 pre-mRNA splicing factor-related similar to pre-mRNA splicing factor pre-mRNA splicing factor prp1 (SP: Q12381) [Fission yeast] (68417.m00470) 2723 Not regulated NC-NC-NC 255385_at At4g04040 pyrophosphate-fructose-6-phosphate 1-phosphotransferase beta subunit, putative/pyrophosphate-dependent 6-phosphofructose- 1-kinase, putative strong similarity to SP|Q41141 Pyrophosphate-fructose 6-phosphate 1-phosphotransferase beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate-dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPI- PFK) {Ricinus communis} (68417.m00574) 2724 Not regulated NC-NC-NC 255327_at At4g04320 malonyl-CoA decarboxylase family protein contains weak similarity to Malonyl-CoA decarboxylase, mitochondrial precursor (EC 4.1.1.9) (MCD) (Swiss-Prot: O95822) [Homo sapiens]; contains Pfam profile PF05292: Malonyl-CoA decarboxylase (MCD) (68417.m00616) 2725 Not regulated NC-NC-NC 255328_at At4g04350 leucyl-tRNA synthetase, putative/leucine-tRNA ligase, putative similar to SP|P36430 Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-tRNA ligase) (LeuRS) {Bacillus subtilis}; contains Pfam profile PF00133: tRNA synthetases class I (I, L, M and V) (68417.m00622) 2726 Not regulated NC-NC-NC 255338_at At4g04470 peroxisomal membrane protein 22 kDa (PMP22) identical to peroxisomal membrane protein [Arabidopsis thaliana] gi|3980254|emb|CAA06834 (68417.m00649) 2727 Not regulated NC-NC-NC 255283_at At4g04620 autophagy 8b (APG8b) identical to autophagy 8b [Arabidopsis thaliana] GI: 19912153; contains Pfam profile PF02991: Microtubule associated protein 1A/1B, light chain 3 (68417.m00675) 2728 Not regulated NC-NC-NC 255288_at At4g04670 Met-10+ like family protein/kelch repeat-containing protein contains Pfam profiles P101344: Kelch motif, PF02475: Met-10+ like- protein (68417.m00683) 2729 Not regulated NC-NC-NC 255300_at At4g04870 CDP-alcohol phosphatidyltransferase family protein similar to SP|Q07580 Cardiolipin synthetase (EC 2.7.8.—) {Saccharomyces cerevisiae; contains Pfam profile PF01066: CDP-alcohol phosphatidyltransferase (68417.m00709) 2730 Not regulated NC-NC-NC 255301_at At4g04800 methionine sulfoxide reductase domain-containing protein/SelR domain-containing protein low similarity to pilin-like transcription factor [Homo sapiens] GI: 5059362, SP|P14930 Peptide methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6) {Neisseria gonorrhoeae}; contains Pfam profile PF01641: SelR domain (68417.m00702) 2731 Not regulated NC-NC-NC 255303_at At4g04860 Der1-like family protein/degradation in the ER-like family protein contains Pfam profile: PF04511 Der1-like family (68417.m00708) 2732 Not regulated NC-NC-NC 255304_at At4g04850 K+ efflux antiporter, putative (KEA3) similar to A. thaliana K+ antiporter KEA1, GenBank accession number AF003382; Monovalent cation:proton antiporter family 2 (CPA2 family) member, PMID: 11500583 (68417.m00707) 2733 Not regulated NC-NC-NC 255305_at At4g04770 ATP-binding-cassette transporter (ABC1) Identical to the protein described in PMID: 11156608 and note that sequence was not deposited into GenBank by the authors. (68417.m00699) 2734 Not regulated NC-NC-NC 255308_at At4g04910 AAA-type ATPase family protein similar to SP|P18706 Vesicular-fusion protein NSF (N-ethylmaleimide-sensitive fusion protein) (NEM-sensitive fusion protein) {Cricetulus griseus}; contains Pfam profiles PF00004: ATPase AAA family, PF02359: Cell division protein 48 (CDC48) N-terminal domain; contains non-consensus AT-AC splice sites at intron 2 (68417.m00714) 2735 Not regulated NC-NC-NC 255253_at At4g05000 vacuolar protein sorting-associated protein 28 family protein/VPS28 family protein contains similarity to Swiss-Prot: Q02767 vacuolar protein sorting-associated protein VPS28 [Saccharomyces cerevisiae] (68417.m00730) 2736 Not regulated NC-NC-NC 255258_at At4g05060 vesicle-associated membrane family protein/VAMP family protein similar to VAP27 GI: 6688926 [Nicotiana plumbeginifolia] (68417.m00746) 2737 Not regulated NC-NC-NC 255259_at At4g05020 NADH dehydrogenase-related similar to alternative NADH-dehydrogenase [Yarrowia lipolytica] GI: 3718005, 64 kDa mitochondrial NADH dehydrogenase [Neurospora crassa] GI: 4753821; contains Pfam profile PF00070: Pyridine nucleotide-disulphide oxidoreductase (68417.m00736) 2738 Not regulated NC-NC-NC 255263_at At4g05160 4-coumarate-CoA ligase, putative/4-coumaroyl-CoA synthase, putative similar to 4CL2 [gi: 12229665] from Arabidopsis thaliana, 4CL1 [gi: 12229631] from Nicotiana labacum; contains Pfam AMP-binding enzyme domain PF00501: acyl-activating enzyme superfamily; identical to cDNA 4-coumarate-CoA ligase-like protein (At4g05180) GI: 29893226 (68417.m00775) 2739 Not regulated NC-NC-NC 255248_at At4g05180 oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ2) identical to SP|Q41932 Oxygen-evolving enhancer protein 3-2, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Arabidopsis thaliana}; similar to SP|P12301 Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Spinacia oleracea}; contains Pfam profile PF05757: Oxygen evolving enhancer protein 3 (PsbQ) (68417.m00778) 2740 Not regulated NC-NC-NC 255249_at At4g05090 inositol monophosphatase family protein low similarity to SP|Q42546 3′(2′)5′-bisphosphate nucleotidase (EC 3.1.3.7) (DPNPase) {Arabidopsis thaliana}; contains Pfam profile PF00459: Inositol monophosphatase family (68417.m00756) 2741 Not regulated NC-NC-NC 255220_al At4g05320 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI: 870791 (68417.m00810) 2742 Not regulated NC-NC-NC 255221_at At4g05150 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein various predicted proteins contains Pfam profile PF00584: PBI domain (68417.m00773) 2743 Not regulated NC-NC-NC 255227_at At4g05440 temperature sensing protein-related contains weak similarity to D123 (GI: 1236114) [Rattus norvegicus] (68417.m00826) 2744 Not regulated NC-NC-NC 255231_at At4g05460 F-box family protein (FBL20) contains similarity to N7 protein GI: 3273101 from [Medicago buncatula] (68417.m00828) 2745 Not regulated NC-NC-NC 255240_at At4g05530 short-chain dehydrogenase/reductase (SDR) family protein similar to peroxisomal short-chain alcohol dehydrogenase GI: 4105190 from [Homo sapiens] (68417.m00842) 2746 Not regulated NC-NC-NC 255243_at At4g05590 expressed protein contains Pfam domain, PF03650: Uncharacterized protein family (UPF0041) (68417.m00864) 2747 Not regulated NC-NC-NC 255199_at At4g07390 PQ-loop repeat family protein/transmembrane family protein similar to SP|Q60441 Mannose-P-dolichol utilization defect 1 protein (Suppressor of Lec15 and Lec35 glycosylation mutation) {Cricetulus griseus}, Lec35 protein [Cricetulus griseus] GI: 9858721; contains Pfam profile PF04193: PQ loop repeat (68417.m01134) 2748 Not regulated NC-NC-NC 255171_at At4g07990 DNAJ heat shock N-terminal domain-containing protein similar to SP|Q9QYI5 DnaJ homolog subfamily B member 10 Mus musculus; contains Pfam profile PF00226 DnaJ domain (68417.m01280) 2749 Not regulated NC-NC-NC 255176_s_at At4g07950 DNA-directed RNA polymerase III family protein similar to SP|Q9Y2Y1 DNA-directed RNA polymerases III 12.5 kDa polypeptide (EC 2.7.7.6) (RNA polymerase III C11 subunit) {Homo sapiens}; contains Pfam profiles PF02150: RNA polymerases M/15 Kd subunit, PF01098: Transcription factor S-II (TFIIS) (68417.m01275) 2750 Not regulated NC-NC-NC 255151_at At4g08180 oxysterol-binding family protein similar to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens}; contains Pfam profiles PF00169: PH domain, PF01237: Oxysterol-binding protein (68417.m01351) 2751 Not regulated NC-NC-NC 255154_at At4g08220 2752 Not regulated NC-NC-NC 255129_at At4g08290 nodulin MtN21 family protein similar to MtN21 GI: 2598575 (root nodule development) from [Medicago truncatuta] (68417.m01369) 2753 Not regulated NC-NC-NC 255130_at At4g08240 expressed protein (68417.m01359) 2754 Not regulated NC-NC-NC 255133_at At4g08320 tetratricopeptide repeat (TPR)-containing protein glutamine-rich tetratricopeptide repeat (TPR) containing protein (SGT) - Rattus norvegicus, PID: e1285298 (SP|O70593); contains Pfam profile PF00515 TPR Domain (68417.m01373) 2755 Not regulated NC-NC-NC 255136_s_at At4g08350 KOW domain-containing transcription factor family protein chromatin structural protein homolog Supt5hp - Mus musculus, PID: g2754752 (68417.m01380) 2756 Not regulated NC-NC-NC 255140_x_at At4g08410 proline-rich extensin-like family protein contains proline-rich extensin domains, INTERPRO: IPR0029135; (68417.m01390) 2757 Not regulated NC-NC-NC 255147_at At4g08460 expressed protein (68417.m01396) 2758 Not regulated NC-NC-NC 255148_at At4g08470 mitogen-activated protein kinase, putative similar to mitogen-activated protein kinase [Arabidopsis thaliana] gi|1255448|dbj|BAA09057; contains Pfam PF00069: Protein kinase domain (68417.m01398) 2759 Not regulated NC-NC-NC 255104_at At4g08685 pollen Ole e 1 allergen and extensin family protein contains Pfam domain, PF01190: Pollen proteins Ole a I family (68417.m01430) 2760 Not regulated NC-NC-NC 255061_at At4g08930 thioredoxin-related contains weak similarity to Swiss-Prot: Q39239 thioredoxin H-type 4 (TRX-H-4). [Mouse-ear cress] (68417.m01470) 2761 Not regulated NC-NC-NC 255066_at At4g08980 F-box family protein (FBW2) contains similarity to N7 protein GI: 3273101 from [Medicago truncatula] (68417.m01479) 2762 Not regulated NC-NC-NC 255077_at At4g09150 T-complex protein 11 contains Pfam PF05794: T-complex protein 11 (68417.m01515) 2763 Not regulated NC-NC-NC 255078_at At4g09010 L-ascorbate peroxidase, chloroplast, putative identical to SP|PB22B1|TL29_ARATH (EC 1.11.1.11) {Arabidopsis thaliana}; ascorbate peroxidase - Spinacia oleracea, (gi: 1669585); contains Pfam domain PF00141: Peroxidase; contains TIGRfam domain TIGR01409: Tat (twin-arginine translocation) pathway signal sequence; identical to ascorbate peroxidase APX4 (AT4g09010) mRNA, partial cds GI: 31980499 (68417.m01488) 2764 Not regulated NC-NC-NC 255079_s_at At4g09000 14-3-3-like protein GF14 chi/general regulatory factor 1 (GRF1) identical to 14-3-3 protein GF14 chi chain GI: 1702986, SP: P42643 from [Arabidopsis thaliana] (68417.m01487) 2765 Not regulated NC-NC-NC 255080_at At4g09030 arabinogalactan-protein (AGP10) identical to gi|10880497|gb|AAG24278; supported by Ceres cDNA 265772 (68417.m01490) 2766 Not regulated NC-NC-NC 255039_at At4g09570 calcium-dependent protein kinase, putative/CDPK, putative similar to calcium-dependent protein kinase [Arabidopsis thaliana] gi|604881|dbj|BAA04830; contains protein kinase domain, Pfam: PF00069; contains EF hand domain (calcium-binding EF-hand), Pfam: PF00036, INTERPRO: IPR002048 (68417.m01575) 2767 Not regulated NC-NC-NC 255041_at At4g09620 expressed protein hypothetical protein F6E13.15 - Arabidopsis thaliana, PIR2: T00682 (68417.m01581) 2768 Not regulated NC-NC-NC 255046_at At4g09650 ATP synthase delta chain, chloroplast, putative/H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative similar to SP|P32980 ATP synthase delta chain, chloroplast precursor (EC 3.6.3.14) {Nicotiana tabacum}; contains Pfam profile PF00213: ATP synthase F1, delta subunit (68417.m01585) 2769 Not regulated NC-NC-NC 255047_at At4g09670 oxidoreductase family protein similar to AX110P [Daucus carota] GI: 285739; contains Pfam profiles PF01408: Oxidoreductase family NAD-binding Rossmann fold, PF02694: Oxidoreductase family C-terminal alpha/beta domain (68417.m01588) 2770 Not regulated NC-NC-NC 255025_at At4g09900 hydrolase, alpha/beta fold family protein similar to ethylene-induced esterase [Citrus sinensis] GI: 14279437, polyneuridine aldehyde esterase [Rauvolfia serpentine] GI: 6651393, SP|Q40708 PIR7A protein {Oryza sativa}; contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68417.m01622) 2771 Not regulated NC-NC-NC 254998_at At4g09760 choline kinase, putative similar to GmCK2p choline kinase gi|1438881|gb|AAC49375 (68417.m01602) 2772 Not regulated NC-NC-NC 254999_at At4g09830 expressed protein (68417.m01612) 2773 Not regulated NC-NC-NC 255000_at At4g09800 40S ribosomal protein S18 (RPS18C) (68417.m01609) 2774 Not regulated NC-NC-NC 255011_at At4g10040 cytochrome c, putative similar to cytochrome c [Pumpkin, Winter squash] SWISS-PROT: P00051 (68417.m01641) 2775 Not regulated NC-NC-NC 255012_at At4g10030 hydrolase, alpha/beta fold family protein contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68417.m01640) 2776 Not regulated NC-NC-NC 255018_at At4g10090 expressed protein (68417.m01651) 2777 Not regulated NC-NC-NC 255021_at At4g10330 glycine-rich protein (68417.m01698) 2778 Not regulated NC-NC-NC 254969_at At4g10360 expressed protein (68417.m01701) 2779 Not regulated NC-NC-NC 254970_at At4g10340 chlorophyll A-B binding protein CP26, chloroplast/light-harvesting complex II protein 5/LHCIIc (LHC85) identical to SP|Q9XF89 Chlorophyll A/B-binding protein CP26, chloroplast precursor (Light-harvesting complex II protein 5) (LHC35) (LHCIIc) {Arabidopsis thaliana}; contains Pfam profile: PF00504 chlorophyll A-B binding protein; chlorophyll a/b-binding protein CP26 in PS II, Brassica juncea, gb: X95727 (68417.m01699) 2780 Not regulated NC-NC-NC 254980_at At4g10450 60S ribosomal protein L9 (RPL90D) ribosomal protein L9, cytosolic-garden pea, PIR2: S19978 (68417.m01717) 2781 Not regulated NC-NC-NC 254990_at At4g10610 RNA-binding protein, putative (68417.m01735) 2782 Not regulated NC-NC-NC 254936_at At4g10790 UBX domain-containing protein low similarity to SP|Q9UNN5 FAS-associated factor 1 (FAF1 protein) {Homo sapiens}; contains Pfam profile PF00789: UBX domain (68417.m01759) 2783 Not regulated NC-NC-NC 254943_at At4g10890 expressed protein (68417.m01772) 2784 Not regulated NC-NC-NC 254950_at At4g10810 expressed protein (68417.m01761) 2785 Not regulated NC-NC-NC 254952_at At4g10960 UDP-glucose 4-epimerase, putative/UDP-galactose 4-epimerase, putative/Galactowaldenase, putative similar to UDP-galactose 4-epimerese from Arabidopsis thaliana SP|Q42605, Cyamopsis tetregonolobe GI: 3021357 [AJ005082] (68417.m01781) 2786 Not regulated NC-NC-NC 254953_at At4g10925 F-box family protein contains Pfam PF00646: F-box domain (68417.m01776) 2787 Not regulated NC-NC-NC 254957_at At4g10970 expressed protein (68417.m01783) 2788 Not regulated NC-NC-NC 254903_at At4g11150 vacuolar ATP synthase subunit E/V-ATPase E subunit/vacuolr proton pump E subunit (VATE) identical to SP|Q39258 Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit) {Arabidopsis thaliana} (68417.m01807) 2789 Not regulated NC-NC-NC 254910_at At4g11175 translation initiation factor IF-1, chloroplast, putative similar to Swiss-Prot: P08698 translation initiation factor IF-1, chloroplast [Spinacia oleracea]; contains Pfam profile PF00575: S1 RNA binding domain (68417.m01810) 2790 Not regulated NC-NC-NC 254915_s_at At4g11310 cysteine proteinase, putative contains similarity to cysteine proteinase RD21A (thiol protease) GI: 435819. SP: P43297 from [Arabidopsis thaliana] (68417.m01827) 2791 Not regulated NC-NC-NC 254918_at At4g11260 phosphatase-related low similarity to protein phosphatase T [Saccharomyces cerevisiae] GI: 897806; contains Pfam profiles PF00515: TPR Domain, PF05002: SGS domain, PF04989: CS domain (68417.m01822) 2792 Not regulated NC-NC-NC 254920_at At4g11220 reticulon family protein (RTNLB2) similar to SP|Q64548 Reticulon 1 (Neuroendocrine-Specific protein) {Rattus norvegicus}; contains Pfam profile PF02453: Reticulon (68417.m01616) 2793 Not regulated NC-NC-NC 254928_at At4g11410 short-chain dehydrogenase/reductase (SDR) family protein contains INTERPRO family IPR002198 Short-chain dehydrogenase/reductase (SDR) superfamily (68417.m01839) 2794 Not regulated NC-NC-NC 254931_at At4g11460 protein kinase family protein contains Pfam PF00069: Protein kinase domain (68417.m01844) 2795 Not regulated NC-NC-NC 254872_al At4g11560 bromo-adjacent homology (BAH) domain-containing protein contains Pfam profile PF01426: BAH domain (68417.m01853) 2796 Not regulated NC-NC-NC 254877_at At4g11640 serine racemase, putative similar to serine racemase [Mus musculus] GI: 6448865; contains Pfam profile PF00291: Pyridoxal- phosphate dependent enzyme (68417.m01861) 2797 Not regulated NC-NC-NC 254879_at At4g11670 expressed protein contains Pfam PF05664: Protein of unknown function (DUF810) (68417.m01865) 2798 Not regulated NC-NC-NC 254891_at At4g11740 ara4-interacting protein, putative (SAY1) similar to Ara4-interacting protein [Arabidopsis thaliana] GI: 13160609; contains Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin interaction motif (68417.m01572) 2799 Not regulated NC-NC-NC 254892_at At4g11800 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase (68417.m01879) 2800 Not regulated NC-NC-NC 254848_at At4g11960 expressed protein hypothetical protein F7H19.70 - Arabidopsis thaliana, PID: e1310057 (68417.m01904) 2801 Not regulated NC-NC-NC 254853_at At4g12080 DNA-binding family protein contains a AT hook motif (DNA binding motifs with a preference for A/T rich regions), Pfam: PF02178 (68417.m01920) 2802 Not regulated NC-NC-NC 254859_at At4g12060 Clp amino terminal domain-containing protein contains Pfam profile: PF02881 Clp amino terminal domain (68417.m01918) 2803 Not regulated NC-NC-NC 254860_at At4g12110 sterol desaturese family protein similar to sterol 4-alpha-methyl-oxidase GI: 16973471 from [Arabidopsis thaliana]; contains Pfam profile PF01598: Sterol desaturase (68417.m01923) 2804 Not regulated NC-NC-NC 254862_at At4g12030 bile acid:sodium symporter family protein low similarity to SP|Q12908 ileal sodium/bile acid cotransporter {Homo sapiens}; contains Pfam profile PF01758: Sodium Bile acid symporter family (68417.m01913) 2805 Not regulated NC-NC-NC 254835_s_at At4g12310 cytochrome P450, putative similar to P450 monooxygenase GI: 14334057 from [Gossypium arboreum] (68417.m01949) 2806 Not regulated NC-NC-NC 254814_at At4g12340 expressed protein (68417.m01952) 2807 Not regulated NC-NC-NC 254827_at At4g12650 endomembrane protein 70, putative TM4 family: (68417.m01990) 2808 Not regulated NC-NC-NC 254830_at At4g12590 expressed protein contains Pfam PF05863: Eukaryotic protein of unknown function (DUF850) (68417.m01985) 2809 Not regulated NC-NC-NC 254778_at At4g12750 expressed protein (68417.m02002) 2810 Not regulated NC-NC-NC 254788_at At4g12790 ATP-binding family protein contains Pfam domain, PF03029: Conserved hypothetical ATP binding protein (68417.m02006) 2811 Not regulated NC-NC-NC 254790_at At4g12800 photosystem I reaction center subunit XI, chloroplast (PSI-L)/PSI subunit V identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI-L) (PSI subunit V) (Swiss-Prot: Q9SUI4) [Arabidopsis thaliana]; contains Pfam profile PF02605: photosystem I reaction center subunit XI; contains 2 transmembrane domains (68417.m02008) 2812 Not regulated NC-NC-NC 254791_at At4g12910 serine carboxypeptidase S10 family protein SERINE CARBOXYPEPTIDASE I PRECURSOR - Hordeum vulgare, SWall: CBP1_HORVU (68417.m02019) 2813 Not regulated NC-NC-NC 254798_at At4g13050 acyl-[acyl carrier protein] thioesterase, putative/acyl-ACP thioesterase, putative/oleoyl-[acyl-carrier protein] hydrolase, putative/ S-acyl fatty acid synthase thioesterase, putative strong similarity to acyl-ACP thioesterase; oleoyl-[acyl-carrier protein] hydrolase [Brassica napus] GI: 435011; contains Pfam profile PF01643: Acyl-ACP thioesterase (68417.m02036) 2814 Not regulated NC-NC-NC 254804_at At4g13010 oxidoreductase, zinc-binding dehydrogenase family protein low similarity to probable NADP-dependent oxidoreductase (zeta- crystallin homolog) P1 [SP|Q39172][gi: 886428] and P2 [SP|Q39173][gi: 886430]; contains Pfam profile PF00107: oxidoreductase, zinc-binding dehydrogenase family (68417.m02030) 2815 Not regulated NC-NC-NC 254747_at At4g13020 serine/threonine protein kinase (MHK) identical to serine/threonine-protein kinase MHK [Arabidopsis thaliana] SWISS- PROT: P43294 (68417.m02031) 2816 Not regulated NC-NC-NC 254750_at At4g13140 expressed protein (68417.m02046) 2817 Not regulated NC-NC-NC 254755_at At4g13220 expressed protein (68417.m02056) 2818 Not regulated NC-NC-NC 254760_at At4g13200 expressed protein hypothetical protein sll1769 - Synechocystis sp,PID: d1018408 (68417.m02053) 2819 Not regulated NC-NC-NC 254763_at At4g13170 60S ribosomal protein L13A (RPL13aC) ribosomal protein L13a - Lupinus luteus, PID: e1237871 (68417.m02049) 2820 Not regulated NC-NC-NC 254764_at At4g13250 short-chain dehydrogenase/reductase (SDR) family protein contains INTERPRO family IPR002198 Short-chain dehydrogenase/reductase (SDR) superfamily (68417.m02060) 2821 Not regulated NC-NC-NC 254765_at At4g13270 expressed protein (68417.m02076) 2822 Not regulated NC-NC-NC 254776_at At4g13360 enoyl-CoA hydralase/isomerase family protein similar to CoA-thioester hydrolase CHY1 (beta-hydroxyisobutyryl-CoA hydrolase) [Arabidopsis thaliana] GI: 8572760; contains Pfam profile PF00378: enoyl-CoA hydratase/isomerase family protein (68417.m02089) 2823 Not regulated NC-NC-NC 254745_at At4g13460 SET domain-containing protein (SUVH9) identical to SUVH9 [Arabidopsis thaliana] GI: 13517759: contains Pfam profiles PF00856: SET domain, PF05033: Pre-SET motif, PF02182: YDG/SRA domain; identical to cDNA SUVH9 (SUVH9) GI: 13517758 (68417.m02102) 2824 Not regulated NC-NC-NC 254721_at At4g13520 expressed protein (68417.m02108) 2825 Not regulated NC-NC-NC 254722_at At4g13530 expressed protein predicted protein, Arabidopsis thaliana (68417.m02109) 2826 Not regulated NC-NC-NC 254727_at At4g13670 peptidoglycan-binding domain-containing protein similar to spore cortex-lytic enzyme prepeptide (GI: 1644192) [Bacillus cereus]; contains Pfam PF01471: Putative peptidoglycan binding domain; contains Pfam PF00684: DnaJ central domain (4 repeats) (68417.m02125) 2827 Not regulated NC-NC-NC 254730_at At4g13730 RabGAP/TBC domain-containing protein low similarity to SP|Q08484 GTPase-activating protein GYP1 {Saccharomyces cerevisiae}; contains Pfam profile PF00588: TBC domain (68417.m02131) 2828 Not regulated NC-NC-NC 254737_at At4g13840 transferase family protein low similarity to acetyl-CoA:benzylalcohol acetyltranferase [Clarkia concinna] GI: 6166328; contains Pfam profile PF02458: Transferase family (68417.m02144) 2829 Not regulated NC-NC-NC 254738_at At4g13860 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss- Prot: Q9SVM8) [Arabidopsis thaliana]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68417.m02147) 2830 Not regulated NC-NC-NC 254682_at At4g13640 myb family transcription factor contains Pfam profile PF00249 myb-like DNA-binding domain (68417.m02122) 2831 Not regulated NC-NC-NC 254686_at At4g13720 inosine triphosphate pyrophosphatase, putative/HAM1 family protein contains Pfam profile PF01725: Ham1 family; similar to inosine triphosphate pyrophosphatase (GI: 13398328) [Homo sapiens] (68417.m02130) 2832 Not regulated NC-NC-NC 254691_at At4g17840 expressed protein (68417.m02661) 2833 Not regulated NC-NC-NC 254656_at At4g18070 expressed protein (68417.m02688) 2834 Not regulated NC-NC-NC 254659_at At4g18240 starch synthase-related protein contains similarity to starch synthase GI: 4582783 from [Vigna unguiculata] (68417.m02709) 2835 Not regulated NC-NC-NC 254665_at At4g18340 glycosyl hydrolase family 17 protein similar to elicitor inducible chitinase Nt-SubE76 GI: 11071974 trots [Nicotiana tabacum] (68417.m02721) 2836 Not regulated NC-NC-NC 254669_at At4g18370 protease HhoA, chloroplast (SPPA) (HHOA) identical to SP|Q9SEL7 Protease HhoA, chloroplast precursor (EC 3.4.21.—) [Arabidopsis thaliana] (68417.m02724) 2837 Not regulated NC-NC-NC 254673_at At4g18430 Ras-related GTP-binding protein, putative similar to GTP-binding protein GI: 303742 from [Pisum sativum] (68417.m02735) 2838 Not regulated NC-NC-NC 254644_at At4g18510 Clavata3/ESR-Related-2 (CLE2) CLAVATA3/ESR-Related-2 (CLE2) (68417.m02744) 2839 Not regulated NC-NC-NC 254649_at At4g18570 proline-rich family protein common family members: At3g25690, At4g04980, At5g61090 [Arabidopsis thaliana] (68417.m02749) 2840 Not regulated NC-NC-NC 254623_at At4g18480 magnesium-chelatase subunit chll, chloroplast/Mg-protoporphrin IX chelatase (CHLI) (CS) (CH42) identical to SP|P161127 Magnesium-chelatase subunit chll, chloroplast precursor (Mg-protoporphyrin IX chelatase) (Protein CS/CH-42) {Arabidopsis thaliana} (68417.m02741) 2841 Not regulated NC-NC-NC 254626_at At4g18400 expressed protein (68417.m02731) 2842 Not regulated NC-NC-NC 254626_at At4g18593 dual specificity protein phosphatae-related contains weak similarity to Dual specificity protein phosphatase 12 (EC 3.1.3.48) (EC 3.1.3.16) (Dual-specificity tyrosine phosphatase YVH1) (Swiss-Prot: Q9UNI6) [Homo sapiens] (68417.m02753) 2843 Not regulated NC-NC-NC 254636_at At4g18700 CBL-interacting protein kinase 12 (CIPK12) identical to CBL-interacting protein kinase 12 [Arabidopsis thaliana] gi|13249123|gb|AAK16687; contains Pfam profiles PF00069: Protein kinase domain and PF03822: NAF domain; identical to cDNA CBL-interacting protein kinase 12 (CIPK12) GI: 13249122 (68417.m02765) 2844 Not regulated NC-NC-NC 254638_at At4g18740 expressed protein (68417.m02769) 2845 Not regulated NC-NC-NC 254617_s_at At4g18730 60S ribosomal protein L11 (RPL11C) (68417.m02768) 2846 Not regulated NC-NC-NC 254596_at At4g18975 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat (68417.m02795) 2847 Not regulated NC-NC-NC 254608_at At4g18910 aquaglyceroporin/NOD26-like major intrinsic protein 2 (NLM2) contains Pfam profile: MIP PF00230; similar to SP: P08995 {Glycine max} Nodulin-26 (N-26); identical to cDNA aquaglyceroporin (nlm2 gene) GI: 11071655, aquaglyceroporin [Arabidopsis thaliana] GI: 11071656 (68417.m02788) 2848 Not regulated NC-NC-NC 254612_at At4g19100 expressed protein (68417.m02818) 2849 Not regulated NC-NC-NC 254615_at At4g19210 RNase L inhibitor protein, putative similar to 68 kDa protein HP68 GI: 16755057 from [Triticum aestivurn] (68417.m02834) 2850 Not regulated NC-NC-NC 254559_at At4g19200 proline-rich family protein contains proline rich extensin domains, INTERPRO: IPR002965 (68417.m02833) 2851 Not regulated NC-NC-NC 254580_at At4g19390 expressed protein (68417.m02854) 2852 Not regulated NC-NC-NC 254584_at At4g19490 expressed protein (68417.m02866) 2853 Not regulated NC-NC-NC 254553_at At4g19530 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. (68417.m02873) 2854 Not regulated NC-NC-NC 254530_at At4g19640 Ras-related GTP-binding protein, putative similar to GTP-binding protein RAB5A GI: 1370178 from [Lotus japonicus] (68417.m02884) 2855 Not regulated NC-NC-NC 254532_at At4g19660 ankyrin repeat family protein/BTB/POZ domain-containing protein contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain (68417.m02868) 2856 Not regulated NC-NC-NC 254533_at At4g19670 zinc finger (C3HC4-type RING finger) family protein contains a Prosite: PS00518 Zinc finger, C3HC4 type (RING finger), signature and Pfam domain PF01485: IBR domain (68417.m02889) 2857 Not regulated NC-NC-NC 254535_at At4g19710 bifunctional aspartate kinase/homoserine dehydrogenase, putative/AK-HSDH, putative similar to gb|X71364 [PIR|S46497] aspartate kinase/homoserine dehydrogenase from Arabidopsis thaliana (68417.m02894) 2858 Not regulated NC-NC-NC 254551_at At4g19840 lectin-related similar to PP2 letin polypeptide [Cucurbita maxima] GI: 410437 (68417.m02908) 2859 Not regulated NC-NC-NC 254496_at At4g20070 peptidase M20/M25/M40 family protein contains similarity to hydantoin utilization protein C [Pseudomonas sp.] SWISS- PROT: Q01264; contains Pfam profile PF01546: Peptidase family M20/M25/M40 (68417.m02936) 2860 Not regulated NC-NC-NC 254500_at At4g20110 vacuolar sorting receptor, putative similar to BP-80 vacuolar sorting receptor [Pisum sativum] GI: 1737222; identical to vacuolar sorting receptor-like protein (GI: 2827665) [Arabidopsis thaliana] (68417.m02943) 2861 Not regulated NC-NC-NC 254503_at At4g20010 expressed protein contains Pfam PF05329: Protein of unknown function (DUF731) (68417.m02929) 2862 Not regulated NC-NC-NC 254505_at At4g19985 GCN5-related N-acetyltransferase (GNAT) family protein contains Pfam profile PF00583: acetyltransferase, GNAT family (68417.m02926) 2863 Not regulated NC-NC-NC 254492_at At4g20260 DREPP plasma membrane polypeptide family protein contains Pfam profile: PF05558 DREPP plasma membrane polypeptide (68417.m02959) 2864 Not regulated NC-NC-NC 254462_at At4g20150 expressed protein (68417.m02948) 2865 Not regulated NC-NC-NC 254464_at At4g20400 transcription factor jumonji (jmj) family protein/zinc finger (C5HC2 type) family protein contains Pfam domains, PF02375: jmjN domain, PF02373: jmjC domain and PF02928: C5HC2 zinc finger (68417.m02978) 2866 Not regulated NC-NC-NC 254474_at At4g20390 integral membrane family protein contains TIGRFAM TIGR01569: plant integral membrane protein TIGR01569; contains Pfam PF04535: Domain of unknown function (DUF5136) (68417.m02977) 2867 Not regulated NC-NC-NC 254475_at At4g20440 small nuclear ribonucleoprotein associated protein B, putative/snRNP-B, putative/Sm protein B, putative similar to SP|Q05856 Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm protein 8) (Sm-B) (SmB) {Drosophila melanogaster} (68417.m02982) 2868 Not regulated NC-NC-NC 254476_at At4g20410 gamma-soluble NSF attachment protein/gamma-SNAP identical to gamma-soluble NSF attachment protein; gamma-SNAP [Arabidopsis thaliana] GI: 6013206 (68417.m02979) 2869 Not regulated NC-NC-NC 254477_at At4g20380 zinc finger protein (LSD1) identical to zinc-finger protein Lsd1 [Arabidopsis thaliana] gi|1872521|gb|AAC49660 (68417.m02974) 2870 Not regulated NC-NC-NC 254478_at At4g20330 transcription initiation factor-related contains weak similarity to Transcription initiation factor IIE, beta subunit (TFIIE-beta) (Swiss- Prot: P29084) [Homo sapiens] (68417.m02968) 2871 Not regulated NC-NC-NC 254481_at At4g20480 expressed protein contains Pfam profile PF04396: Protein of unknown function, DUF537 (68417.m02987) 2872 Not regulated NC-NC-NC 254438_at At4g20980 eukaryotic translation initiation factor 3 subunit 7, putative/eIF-3 zeta, putative/eIF3d, putative similar to initiation factor 3d [Arabidopsis thaliana] GI: 12407755, SP|O15371 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66) (eIF3d) {Homo sapiens}; contains Pfam profile PF05091: Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (68417.m03037) 2873 Not regulated NC-NC-NC 254444_at At4g20960 cytidine/deoxycytidylate deaminase family protein similar to SP|P25539 Riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5- phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)] {Escherichia coil}; contains Pfam profile PF00383: Cytidine and deoxycytidylate deaminase zinc-binding region (68417.m03035) 2874 Not regulated NC-NC-NC 254446_at At4g20890 tubulin beta-9 chain (TUB9) nearly identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis thaliana} (68417.m03029) 2875 Not regulated NC-NC-NC 254447_at At4g20860 FAD-binding domain-containing protein simlar to SP|P30986 reticulin oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) [Eschscholzia californica]; contains PF01565 FAD binding domain (68417.m03026) 2876 Not regulated NC-NC-NC 254448_at At4g20870 fatty add hydroxylase, putative similar to fatty acid hydroxylase Fah1p GB: AF021804 GI: 2736147 from [Arabidopsis thaliana] (68417.m03027) 2877 Not regulated NC-NC-NC 254460_at At4g21210 expressed protein contains Pfam domain PF03618: Domain of unknown function (DUF299) (68417.m03086) 2878 Not regulated NC-NC-NC 254428_at At4g21160 zinc finger and C2 domain protein (ZAC) identical to zinc finger and C2 domain protein GI: 9957238 from [Arabidopsis thaliana] (68417.m03058) 2879 Not regulated NC-NC-NC 254429_at At4g21105 expressed protein (68417.m03052) 2880 Not regulated NC-NC-NC 254398_at At4g21280 oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ) identical to SP|Q9XFT3 Oxygen-evolving enhancer protein 3-1, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Arabidopsis thaliana}; similar to SP|P12301 Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Spinacia oleracea}; contains Pfam profile PF05757: Oxygen evolving enhancer protein 3 (PsbQ) (68417.m03075) 2881 Not regulated NC-NC-NC 254399_at At4g21110 G10 family protein contains Pfam profile: PF01125 G10 protein (68417.m03053) 2882 Not regulated NC-NC-NC 254410_at At4g21410 protein kinase family protein contains Pfam PF00069: Protein kinase domain (68417.m03093) 2883 Not regulated NC-NC-NC 254414_at At4g21320 (2R)-phospho-3-sulfolactate synthase-related contains weak similarity to Swiss-Prot: Q57703 (2R)-phospho-3-sulfolactate synthase (PSL synthase) [Methanococcus jannaschii] (68417.m03079) 2884 Not regulated NC-NC-NC 254417_at At4g21470 riboflavin kinase/FAD synthetase family protein contains Pfam profiles PF01687: Riboflavin kinase/FAD synthetase, PF00702: haloacid dehalogenase-like hydrolase (68417.m03105) 2885 Not regulated NC-NC-NC 254425_at At4g21450 vesicle-associated membrane family protein/VAMP family protein similar to VAP27 GI: 6688926 [Nicotiana plumbaginifolia] (68417.m03102) 2886 Not regulated NC-NC-NC 254392_at At4g21600 bifunctional nuclease, putative similar to bifunctional nuclease [Zinnia elegans] gi|4099833|gb|AAD00694 (68417.m03128) 2887 Not regulated NC-NC-NC 254393_at At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein Pig3 Homo sapiens, PID: G2754812; contains Pfam zinc-binding dehydrogenase domain PF00107 (68417.m03122) 2888 Not regulated NC-NC-NC 254370_at At4g21750 L1 specific homeobox gene (ML1)/ovule-specific homeobox protein A20 nearly identical to meristem L1 layer homeobox protein A20 (AtML1) [Arabidopsis thaliana] GI: 1881536, protodermal factor2 (PDF2) [Arabidopsis thaliana] GI: 14276060 (68417.m03148) 2889 Not regulated NC-NC-NC 254375_at At4g21800 ATP-binding family protein contains Pfam domain, PF03029: Conserved hypothetical ATP binding protein (68417.m03153) 2890 Not regulated NC-NC-NC 254376_at At4g21790 transmembrane protein-related (TOM1) contains some similarity to transmembrane protein TOM3 GI: 15425641 from [Arabidopsis thaliana]; identical to cDNA TOM1 GI: 9967414 (68417.m03152) 2891 Not regulated NC-NC-NC 254376_at At4g21810 Der1-like family protein/degradation in the ER-like family protein contains Pfam profile: PF04511 Der1-like family (68417.m03155) 2892 Not regulated NC-NC-NC 254363_at At4g22010 multi-copper oxidase type I family protein similar to pollen-specific BP10 protein [SP|Q00624][Brassica napus]; contains Pfam profile: PF00394 Multicopper oxidase (68417.m03185) 2893 Not regulated NC-NC-NC 254341_at At4g22130 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68417.m03199) 2894 Not regulated NC-NC-NC 254345_at At4g22000 expressed protein (68417.m03184) 2895 Not regulated NC-NC-NC 254346_at At4g21980 autophagy 8a (APG8a) identical to autophagy 8a [Arabidopsis thaliana] GI: 19912151; contains Pfam profile PF02991: Microtubule associated protein 1A/1B, light chain 3 (68417.m03182) 2896 Not regulated NC-NC-NC 254347_at At4g22070 WRKY family transcription factor identical to WRKY transcription factor 31 (WRKY31) GI: 15990589 from [Arabidopsis thailiana] (68417.m03192) 2897 Not regulated NC-NC-NC 254348_at At4g22150 UBX domain-containing protein similar to XY40 protein [Rattus norvegicus] GI: 2547025; contains Pfam profile PF00769: UBX domain (68417.m03201) 2898 Not regulated NC-NC-NC 254355_at At4g22380 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT: P32495 and PMID: 2063628. (68417.m03234) 2899 Not regulated NC-NC-NC 254356_at At4g22190 expressed protein (68417.m03208) 2900 Not regulated NC-NC-NC 254358_at At4g22310 expressed protein contains Pfam domain, PF03650: Uncharacterized protein family (UPF0041) (68417.m03226) 2901 Not regulated NC-NC-NC 254335_at At4g22260 alternative oxidase, putative/immutans protein (IM) identical to IMMUTANS from Arabidopsis thaliana [gi: 4138855]; contains Pfam profile PF01786 alternative oxidase (68417.m03220) 2902 Not regulated NC-NC-NC 254306_at At4g22330 alkaline phytoceramidase family/aPHC family contains Pfam profile: PF05875: alkaline phytoceramidase (aPHC) (68417.m03228) 2903 Not regulated NC-NC-NC 254321_at At4g22590 trehalose-6-phosphate phosphatase, putative similar to trehalose-6-phosphate phosphatase (AtTPPA) GI: 2944178; contains Pfam profile PF02358: Trehalose-phosphatase (68417.m03259) 2904 Not regulated NC-NC-NC 254327_at At4g22490 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 (68417.m03247) 2905 Not regulated NC-NC-NC 254328_at At4g22570 adenine phosphoribosyltransferase, putative strong similarity to Adenine phosphoribosyltransferase [Hordeum vulgare subsp. vulgare] GI: 9711921; contains Pfam profile PF00156: Phosphoribosyl transferase domain (68417.m03257) 2906 Not regulated NC-NC-NC 254329_at At4g22540 oxysterol-binding family protein similar to SP|P16258 Oxysterol-binding protein 1 (Oryctolagus cuniculus); contains Pfam profiles PF00169: PH domain, PF01237: Oxysterol-binding protein (68417.m03252) 2907 Not regulated NC-NC-NC 254273_at At4g22720 glycoprotease M22 family protein similar to sialylglycoprotease [Haemophilus ducreyi] GI: 6942294; contains Pfam profile PF00814: Glycoprotease family (68417.m03277) 2908 Not regulated NC-NC-NC 254278_at At4g22740 glycine-rich protein (68417.m03280) 2909 Not regulated NC-NC-NC 254279_at At4g22750 zinc finger (DHHC type) family protein contains DHHC zinc finger domain PF01529 (68417.m03283) 2910 Not regulated NC-NC-NC 254281_at At4g22840 bile acid: sodium symporter family protein low similarity to SP|Q12908 

eal sodium/bile acid cotransporter {Homo sapiens}; contains Pfam profile PF01758: Sodium Bile acid symporter family (68417.m03298) 2911 Not regulated NC-NC-NC 254291_at At4g23010 UDP-galactose transporter-related contains weak similarity to UDP-galactose transporter related isozyme 1 (GI: 1669562) [Mus musculus] (68417.m03319) 2912 Not regulated NC-NC-NC 254293_at At4g23060 calmodulin-binding family protein contains Pfam profile PF00612: IQ calmodulin-binding motif (68417.m03325) 2913 Not regulated NC-NC-NC 254298_at At4g22890 expressed protein (68417.m03305) 2914 Not regulated NC-NC-NC 254299_at At4g22920 expressed protein (68417.m03310) 2915 Not regulated NC-NC-NC 254267_at At4g22930 dihydroorotase, mitochondrial/DHOase (PYR4) identical to SP|O04904 Dihydroorotase, mitochondrial precursor (EC 3.5.2.3) (DHOase) {Arabidopsis thaliana} (68417.m03311) 2916 Not regulated NC-NC-NC 254269_at At4g23050 protein kinase, putative similar to MAP3K delta-1 protein kinase [Arabidopsis thaliana] gi|2253010|emb|CAA74591; contains Pfam PF00069 Protein kinase domain and PF00989 PAS domain (68417.m03323) 2917 Not regulated NC-NC-NC 254248_at At4g23270 protein kinase family protein contains Pfam PF00069: Protein kinase domain (68417.m03354) 2918 Not regulated NC-NC-NC 254249_at At4g23280 protein kinase, putative similar to receptor-like protein kinase 4 (gi: 13506745), 5 (gi: 13506747), and 6 (gi: 13506749) from Arabidopsis thaliana; contains Pfam protein kinase domain PF00069 (68417.m03355) 2919 Not regulated NC-NC-NC 254259_s_at At4g23420 short-chain dehydrogenase/reductase (SDR) family protein similar to WW-domain oxidoreductase [Mus musculus] GI: 6934274, WW domain-containing oxidoreductase isoform FORII [Homo sapiens] GI: 15667686; contains Pfam PF00106: oxidoreductase, short chain dehydrogenase/reductase family (68417.m03375) 2920 Not regulated NC-NC-NC 254261_at At4g23460 beta-adaptin, putative strong similarity to SP|Q10567 Adapter-related protein complex 1 beta 1 subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin [Drosophila melanogaster] GI: 434902; contains Pfam profile: PF01602 Adaptin N terminal region (68417.m03381) 2921 Not regulated NC-NC-NC 254262_at At4g23480 2922 Not regulated NC-NC-NC 254239_at At4g23400 major intrinsic family protein/MIP family protein contains Pfam profile: MIP PF00230 (68417.m03373) 2923 Not regulated NC-NC-NC 254211_at At4g23570 phosphatase-related low similarity to phosphoprotein phosphatase [Mus musculus] GI: 567040; contains Pfam profiles PF00515: TPR Domain, PF05002: SGS domain, PF04969: CS domain (68417: m03395) 2924 Not regulated NC-NC-NC 254214_at At4g23640 potassium transporter/tiny root hair 1 protein (TRH1) identical to tiny root hair 1 protein [Arabidopsis thaliana] gi|11181958|emb|CAC16137; KUP/HAK/KT Transporter family member, PMID: 11500563; identical to cDNA mRNA for tiny root hair 1 protein (trh1) GI: 11181957 (68417.m03404) 2925 Not regulated NC-NC-NC 254215_at At4g23700 cation/hydrogen exchanger, putative (CHX17) similar to Na+/H+-exchanging protein sir1595 - Synechocystis sp., EMBL: D90902; monovalent cation:proton antiporter family 2 (CPA2) member, PMID: 11500563 (68417.m03411) 2926 Not regulated NC-NC-NC 254216_at At4g23710 vacuolar ATP synthase subunit G 2 (VATG2)/V-ATPase G subunit 2 (VAG2)/vacuolar proton pump G subunit 2 identical to Swiss Prot: O82629 vacuolar ATP synthase subunit G 2 (V-ATPase G subunit 2, Vacuolar proton pump G subunit 2) [Arabidopsis thaliana] (68417.m03412) 2927 Not regulated NC-NC-NC 254218_at At4g23740 leucine-rich repeat transmembrane protein kinase, putative receptor-like protein kinase - Arabidopsis thaliana RKL1, PID: g4008006 (68417.m03415) 2928 Not regulated NC-NC-NC 254223_at At4g23730 aldose 1-epimerase family protein similar to apospory-associated protein C; APOC [Chlamydomonas reinhardtii] GI: 6970044 Pfam profile PF01263: Aldose 1-epimerase (68417.m03414) 2929 Not regulated NC-NC-NC 254224_at At4g23650 calcium-dependent protein kinase, putative/CDPK, putative similar to calcium-dependent protein kinase [Marchantia polymorpha] gi|5162877|dbj|BAA81748; contains protein kinase domain, Pfam: PF00069; contains EF hand domain (calcium-binding EF-hand), Pfam: PF00036, INTERPRO: IPR002048 (68417.m03405) 2930 Not regulated NC-NC-NC 254228_at At4g23620 50S ribosomal protein-related contains weak similarity to 50S ribosomal protein L25 (TL5). (Swiss-Prot: P56930) [Thermus thermophilus] (68417.m03402) 2931 Not regulated NC-NC-NC 254232_at At4g23600 coronatine-responsive tyrosine aminotransferase/tyrosine transaminase similar to nicotianamine aminotransferase from Hordeum vulgare [GI: 6498122, GI: 6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II; identical to cDNA coronatine- regulated tyrosine aminotransferase (F9D16.70) GI: 15076852 (68417.m03399) 2932 Not regulated NC-NC-NC 254233_at At4g23800 high mobility group (HMG1/2) family protein similar to HMG2B [Homo sapiens] GI: 32335; contains Pfam profile PF00505: HMG (high mobility group) box (68417.m03422) 2933 Not regulated NC-NC-NC 254179_at At4g23910 expressed protein various predicted proteins, Arabidopsis thaliana (68417.m03439) 2934 Not regulated NC-NC-NC 254190_at At4g23885 expressed protein (68417.m03435) 2935 Not regulated NC-NC-NC 254198_at At4g24090 expressed protein (68417.m03459) 2936 Not regulated NC-NC-NC 254147_at At4g24270 RNA recognition motif (RRM)-containing protein low similarity to tumor-rejection antigen SART3 [Mus musculus] GI: 7637845; contains INTERPRO: IPR000504 RNA-binding region RNP-1 (RNA recognition motif) domain (68417.m03483) 2937 Not regulated NC-NC-NC 254148_at At4g24280 heat shock protein 70, putative/HSP70, putative strong similarity to heat shock protein 70 [Arabidopsis thaliana] GI: 6746592; similar to heat shock 70 protein - Spinacia oleracea, PID: g2654208 (68417.m03486) 2938 Not regulated NC-NC-NC 254154_at At4g24460 expressed protein (68417.m03506) 2939 Not regulated NC-NC-NC 254160_at At4g24210 F-box family protein/SLEEPY1 protein contains Pfam PF00646: F-box domain; similar to F-box protein FbxB (GI: 6164735) [Homo sapiens]; identified as SLEEPY1 in McGinnis, et al, Plant Cell (2003) 15: 1120-1130. (68417.m03475) 2940 Not regulated NC-NC-NC 254161_at At4g24370 expressed protein (68417.m03495) 2941 Not regulated NC-NC-NC 254162_at At4g24440 transcription initiation factor IIA gamma chain/TFIIA-gamma (TFIIA-S) identical to transcription initiation factor IIA gamma chain SP: Q39236 from [Arabidopsis thaliana]; (68417.m03503) 2942 Not regulated NC-NC-NC 254163_s_at At4g24340 phosphorylase family protein contains Pfam PF01048: Phosphorylase family (68417.m03493) 2943 Not regulated NC-NC-NC 254164_at At4g24470 zinc finger (GATA type) protein ZIM (ZIM) identical to zinc-finger protein expressed in Inflorescence Meristem, ZIM gi: 8918533 from [Arabidopsis thaliana] (68417.m0507) 2944 Not regulated NC-NC-NC 254172_at At4g24550 clathrin adaptor complexes medium subunit family protein contains Pfam profile: PF00928 adaptor complexes medium subunit family (68417.m03518) 2945 Not regulated NC-NC-NC 254116_at At4g24730 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase (68417.m03538) 2946 Not regulated NC-NC-NC 254117_at At4g24750 expressed protein (68417.m03542) 2947 Not regulated NC-NC-NC 254119_at At4g24780 pectate lyase family protein similar to pectate lyase GP: 14289169 from [Salix gilgiana] (68417.m03548) 2948 Not regulated NC-NC-NC 254126_at At4g24770 31 kDa ribonucleoprotein, chloroplast, putative/RNA-binding protein RNP-T, putative/RNA-binding protein 1/2/3, putative/RNA- binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68417.m03546) 2949 Not regulated NC-NC-NC 254127_at At4g24520 NADPH-cytochrome p450 reductase, putative/NADPH-ferrihemoprotein reductase, putative similar to NADPH-ferrihemoprotein reductase NADPH-cytochrome P450 oxydoreductase isoform 1 [Populus balsamifera subsp. trichocarpa x Populus deltoides] GI: 13183562, SP|P37116 NADPH-cytochrome P450 reductase (EC 1.6.2.4) (CPR) [Vigna radiata] {Phaseolus aureus} (68417.m03515) 2950 Not regulated NC-NC-NC 254131_at At4g24740 protein kinase (AFC2) identical to protein kinase AFC2 [Arabidopsis thaliana] SWISS-PROT: P51567 (68417.m03540) 2951 Not regulated NC-NC-NC 254134_at At4g24830 arginosuccinate synthase family contains Pfam profile: PF00764 arginosuccinate synthase (68417.m03557) 2952 Not regulated NC-NC-NC 254137_at At4g24930 thylakoid lumenal 17.9 kDa protein, chloroplast SP: Q9SW33; GI: 17369630; PMID: 11719511; similar to expressed protein gi: 12321169 {Oryza sativa} (68417.m03570) 2953 Not regulated NC-NC-NC 254083_at At4g24920 protein transport protein SEC61 gamma subunit, putative similar to Swiss-Prot: Q19967 protein transport protein SEC61 gamma subunit [Caenorhabditis elegans] (68417.m03568) 2954 Not regulated NC-NC-NC 254086_at At4g24820 26S proteasome regulatory subunit, putative (RPN7) contains similarity to ubiquitin activating enzyme GI: 3647283 from [Lycopersicon esculentum] (68417.m03555) 2955 Not regulated NC-NC-NC 254087_at At4g24840 expressed protein (68417.m03558) 2956 Not regulated NC-NC-NC 254103_at At4g25030 expressed protein (68417.m03590) 2957 Not regulated NC-NC-NC 254105_at At4g25080 magnesium-protoporphyrin O-methyltransferase, putative/magnesium-protoporphyrin IX methyltransferase, putative similar to SP|Q55467 Magnesium-protoporphyrin O-methyltransferase (EC 2.1.1.1) (Magnesium-protoporphyrin IX methyltransferase) {Synechocystis sp.} (68417.m03598) 2958 Not regulated NC-NC-NC 254108_at At4g25230 zinc finger (C3HC4-type RING finger) family protein similar to autocrine motility factor receptor [Mus musculus] GI: 5931953; contains Pfam profiles PF00097: Zinc finger, C3HC4 type (RING finger), PF02845: CUE domain (68417.m03630) 2959 Not regulated NC-NC-NC 254057_at At4g25170 expressed protein (68417.m03624) 2960 Not regulated NC-NC-NC 254058_at At4g25210 expressed protein weak similarity to storekeeper protein [Solanum tuberosum] GI: 14268476; contains Pfam profile PF04504: Protein of unknown function, DUF573 (68417.m03628) 2961 Not regulated NC-NC-NC 254068_at At4g25450 ABC transporter family protein similar to multidrug resistance protein 2 SP: P21440 from [Mus musculus] (68417.m03665) 2962 Not regulated NC-NC-NC 254073_at At4g25500 arginine/serine-rich splicing factor RSP40 (RSP40) identical to SP|P92965 Arginine/serine-rich splicing factor RSP40 {Arabidopsis thaliana} (68417.m03673) 2963 Not regulated NC-NC-NC 254076_at At4g25340 immunophilin-related/FKBP-type peptidyl-prolyl cis-trans isomerase-related immunophilin FKBP46 - Spodoptera frugiperda (fall armyworm), PIR2: A55320 (68417.m03647) 2964 Not regulated NC-NC-NC 254077_at At4g25640 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI: 12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family (68417.m03692) 2965 Not regulated NC-NC-NC 254082_at At4g25720 glutamine cyclotransferase family protein contains Pfam profile: PF05096 glutamine cyclotransferase (68417.m03702) 2966 Not regulated NC-NC-NC 254049_at At4g25740 40S ribosomal protein S10 (RPS10A) 40S ribosomal protein S10 - Lumbricus rubellus, PID: e1329701 (68417.m03706) 2967 Not regulated NC-NC-NC 254050_s_at At4g25670 expressed protein (68417.m03696) 2968 Not regulated NC-NC-NC 254030_at At4g25890 60S acidic ribosomal protein P3 (RPP3A) acidic ribosomal protein P3a-maize, PIR2: T02037 (68417.m03723) 2969 Not regulated NC-NC-NC 254034_at At4g25960 multidrug resistance P-glycoprotein, putative similar to multidrug resistant P-glycoprotein GI: 4204793 from [Solanum tuberosum] (68417.m03735) 2970 Not regulated NC-NC-NC 254038_at At4g25910 nitrogen fixation protein, putative nitrogen fixation protein nifU (SP: Q43885) [Anabaena sp.]; contains Pfam profile: PF01106 NifU- like domain (68417.m03725) 2971 Not regulated NC-NC-NC 254039_at At4g25840 haloacid dehalogenase-like hydrolase family protein low similarity to SP|Q08623 GS1 protein {Homo sapiens}; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase (68417.m03717) 2972 Not regulated NC-NC-NC 254040_at At4g25900 aldose 1-epimerase family protein similar to apospory-associated protein C; APOC [Chlamydomonas reinhardtii] GI: 6970044 Pfam profile PF01263: Aldose 1-epimerase (68417.m03724) 2973 Not regulated NC-NC-NC 254041_at At4g25830 integral membrane family protein contains TIGRFAM TIGR01569: plant integral membrane protein TIGR01569; contains Pfam PF04535: Domain of unknown function (DUF588) (68417.m03715) 2974 Not regulated NC-NC-NC 254044_at At4g25820 xyloglucan:xyloglucosyl transferase/xyloglucan endotransglycosylase/endo-xyloglucan transferase (XTR9) identical to xyloglucan endotransglycosylase GI: 4218963 from [Arabidopsis thaliana] (68417.m03714) 2975 Not regulated NC-NC-NC 253991_at At4g26000 KH domain-containing protein single-stranded nucleic acid-binding protein CBP-mouse, PIR2: S78515 (68417.m03745) 2976 Not regulated NC-NC-NC 253992_at At4g26060 expressed protein (68417.m03751) 2977 Not regulated NC-NC-NC 253993_at At4g26070 mitogen-activated protein kinase kinase (MAPKK) (MKK1) (MEK1) identical to MEK1 [Arabidopsis thaliana] gi|2196704|gb|AAB97145; mitogen-activated protein kinase kinase (MAPKK) family, PMID: 12119167 (68417.m03752) 2978 Not regulated NC-NC-NC 253994_at At4g26080 protein phosphatase 2C ABI1/PP2C ABI1/abscisic acid-insensitive 1 (ABI1) nearly identical to SP|P49597 Protein phosphatase 2C ABI1 (EC 3.1.3.16) (PP2C) (Abscisic acid-insensitive 1) {Arabidopsis thaliana} (68417.m03755) 2979 Not regulated NC-NC-NC 253995_at At4g26100 casein kinase, putative similar to casein kinase I, delta isoform [Arabidopsis thaliana] SWISS-PROT: P42158; contains protein kinase domain, Pfam: PF00069 (68417.m03757) 2980 Not regulated NC-NC-NC 253996_at At4g26110 nucleosome assembly protein (NAP), putative similar to nucleosome assembly protein 1 [Glycine max] GI: 1161252; contains Pfam profile PF00956: Nucleosome assembly protein (NAP) (68417.m03759) 2981 Not regulated NC-NC-NC 253998_at At4g26010 peroxidase, putative peroxidase ATP13a - Arabidopsis thaliana, PID: e264765; identical to cDNA class III peroxidase ATP35, GI: 17530565 (68417.m03746) 2982 Not regulated NC-NC-NC 254004_at At4g26300 arginyl-tRNA synthetase, putative/arginine-tRNA ligase, putative similar to SP|P37880 Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine-tRNA ligase) (ArgRS) {Cricetulus longicaudatus}; contains Pfam profiles PF00750: arginyl-tRNA synthetase, PF03485: arginyl-tRNA synthetase N-terminal domain (68417.m03783) 2983 Not regulated NC-NC-NC 254010_at At4g26240 expressed protein (68417.m03777) 2984 Not regulated NC-NC-NC 254012_at At4g26230 60S ribosomal protein L31 (RPL31B) ribosomal protein L31, Nicotiana glutinosa, U23784 (68417.m03776) 2985 Not regulated NC-NC-NC 253986_at At4g26210 mitochondrial ATP synthase g subunit family protein contains Pfam profile: PF04718 mitochondrial ATP synthase g subunit (68417.m03773) 2986 Not regulated NC-NC-NC 253959_at At4g26410 expressed protein (68417.m03801) 2987 Not regulated NC-NC-NC 253964_at At4g26480 KH domain-containing protein qkl-7, Mus musculus (68417.m03810) 2988 Not regulated NC-NC-NC 253967_at At4g26550 expressed protein probable membrane protein YBL102w, yeast, PIR2: S45393 (68417.m03824) 2989 Not regulated NC-NC-NC 253972_at At4g26500 BolA-like family protein/Fe—S metabolism associated domain-containing protein similar to SufE protein [Erwinia chrysanthemi] GI: 11342550; contains Pfam profiles PF02657: Fe—S metabolism associated domain, PF01722: BolA-like protein (68417.m03813) 2990 Not regulated NC-NC-NC 253973_at At4g26555 immunophilin/FKBP-type peptidyl-prolyl cis-trans isomerase family protein similar to FK506-binding protein (Peptidyl-prolyl cis- trans isomerase) (PPiase) (Rotamase) (SP: P25138) [{Neisseria meningitidis]; contains Pfam profile: PF00254 FKBP-type peptidyl- prolyl cis-trans isomerases; similar to FK506-binding protein 39 kDa (Peptidyl-prolyl cis-trans isomerase) (PPiase) (EC 5.2.1.8) (SP: O74191) {Schizosaccharomyces pombe} (68417.m03826) 2991 Not regulated NC-NC-NC 253976_at At4g26610 protein kinase, putative similar to protein kinase G11A [Oryza sativa] SWISS-PROT: P47997 (68417.m03835) 2992 Not regulated NC-NC-NC 253980_at At4g26620 sucrase-related (68417.m03836) 2993 Not regulated NC-NC-NC 253981_at At4g26670 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein weak similarity to SP|Q9Z0V8 Mitochondrial import inner membrane translocase subunit TIM17 A {Mus musculus}; contains Pfam profile PF02466: Mitochondrial import inner membrane translocase subunit Tim17 (68417.m03842) 2994 Not regulated NC-NC-NC 253982_at At4g26570 calcineurin B-like protein 3 (CBL3) identical to calcineurin B-like protein 3 (GI: 22136404) [Arabidopsis thaliana] (68417.m03830) 2995 Not regulated NC-NC-NC 253983_at At4g26640 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA-binding domain (68417.m03838) 2996 Not regulated NC-NC-NC 253925_at At4g26690 glycerophosphoryl diester phosphodiesterase family protein weak similarity to glycerophosphodiester phosphodiesterase [Borrelia hermsii] GI: 1399038; contains Pfam profile PF03009: Glycerophosphoryl diaster phosphodiesterase family (68417.m03846) 2997 Not regulated NC-NC-NC 253927_at At4g26710 ATP synthase subunit H family protein contains similarity to Swiss-Prot: O15342 Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar proton pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2 kDa membrane accessory protein) [Homo sapiens] (68417.m03849) 2998 Not regulated NC-NC-NC 253928_at At4g26720 serine/threonine protein phosphatase PP-X isozyme 1 (PPX1) identical to SP|P48529 Serine/threonine protein phosphatase PP-X isozyme 1 (EC 3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile PF00149: Ser/Thr protein phosphatase (68417.m03851) 2999 Not regulated NC-NC-NC 253935_at At4g26870 aspartyl-tRNA synthetase, putative/aspartate-tRNA ligase, putative simialr to aspartate-tRNA ligase (EC 6.1.1.12) from Drosophila melanogaster GI: 4512034, Homo sapiens SP|P14868, Rattus norvegicus SP|P15178; contains Pfam profile PF00152 tRNA synthetases class II (D, K and N) (68417.m03867) 3000 Not regulated NC-NC-NC 253943_at At4g27030 expressed protein (68417.m03887) 3001 Not regulated NC-NC-NC 253944_at At4g27040 expressed protein (68417.m03888) 3002 Not regulated NC-NC-NC 253950_at At4g26910 2-oxoacid dehydrogenase family protein similar to SP|P36957 Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.61) {Homo sapiens}; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme (68417.m03871) 3003 Not regulated NC-NC-NC 253951_at At4g26860 alanine racemase family protein contains Pfam domain, PF01168: Alanine racemase, N-terminal domain (68417.m03866) 3004 Not regulated NC-NC-NC 253952_at At4g26840 ubiquitin-like protein (SMT3) identical to Ubiquitin-like protein SMT3 SP: P55852 from[Arabidopsis thaliana]; identical to cDNA SMT3 protein GI: 1707371 (68417.m03864) 3005 Not regulated NC-NC-NC 253953_at At4g26750 hydroxyproline-rich glycoprotein family protein (68417.m03854) 3006 Not regulated NC-NC-NC 253954_at At4g26970 aconitate hydratase, cytoplasmic, putative/citrate hydro-lyase/aconitase, putative strong similarity to SP|P49608 Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) {Cucurbita maxima}; contains Pfam profiles PF00330: Aconitase family (aconitate hydratase), PF00694: Aconitase C-terminal domain (68417.m03881) 3007 Not regulated NC-NC-NC 253955_at At4g27000 RNA-binding protein 45 (RBP45), putative DNA binding protein ACBF - Nicotiana tabacum, PID: g1899188 (68417.m03884) 3008 Not regulated NC-NC-NC 253956_at At4g26700 fimbrin-like protein (FIM1) identical to fimbrin-like protein (ATFIM1) [Arabidopsis thaliana] GI: 2905893 (68417.m03848) 3009 Not regulated NC-NC-NC 253921_at At4g26900 imidazole glycerol phosphate synthase hisHF, chloroplast/IGP synthase/ImGPP synthase/IGPS identical to SP|Q9SZ30 Imidazole glycerol phosphate synthase hisHF, chloroplast precursor (IGP synthase) {Arabidopsis thaliana} (68417.m03870) 3010 Not regulated NC-NC-NC 253923_at At4g27060 expressed protein (68417.m03891) 3011 Not regulated NC-NC-NC 253899_at At4g27080 thioredoxin family protein contains Pfam PF00085: Thioredoxin (68417.m03893) 3012 Not regulated NC-NC-NC 253901_at At4g27090 60S ribosomal protein L14 (RPL14B) ribosomal protein L14-Human, PIR3: JC5954 (68417.m03894) 3013 Not regulated NC-NC-NC 253908_at At4g27260 auxin-responsive GH3 family protein similar to auxin-responsive GH3 product [Glycine max] GI: 18591; contains Pfam profile PF03321: GH3 auxin-responsive promoter (68417.m03913) 3014 Not regulated NC-NC-NC 253918_at At4g27320 universal stress protein (USP) family protein low similarity to ER6 protein [Lycopersicon esculentum] GI: 5669654, early nodulin ENOD18 [Vicia faba] GI: 11602747; contains Pfam profile PF00582: universal stress protein family (68417.m03920) 3015 Not regulated NC-NC-NC 253919_at At4g27350 expressed protein (68417.m03925) 3016 Not regulated NC-NC-NC 253865_at At4g27470 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68417.m03947) 3017 Not regulated NC-NC-NC 253868_at At4g27500 expressed protein non-consensus GA donor splice site at exon 6 (68417.m03950) 3018 Not regulated NC-NC-NC 253875_at At4g27520 plastocyanin-like domain-containing protein similar to PIR|JC7196 phytocyanin-related protein Pn14 {Ipomoea nil}; contains Pfam profile PF02296: Plastocyanin-like domain (68417.m03952) 3019 Not regulated NC-NC-NC 253885_at At4g27690 vacuolar protein sorting-associated protein 26, putative/VPS26, putative similar to vacuolar sorting protein 26 [Homo sapiens] GI: 9622852; contains Pfam profile PF03643: Vacuolar protein sorting-associated protein 26 (68417.m03981) 3020 Not regulated NC-NC-NC 253888_at At4g27750 expressed protein (68417.m03987) 3021 Not regulated NC-NC-NC 253890_s_at At5g54100 band 7 family protein similar to stomatin-like protein [Zea mays] GI: 7716464; contains Pfam profile PF01145: SPFH domain/Band 7 family (68418.m06736) 3022 Not regulated NC-NC-NC 253858_at At4g27600 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase (68417.m03966) 3023 Not regulated NC-NC-NC 253861_at At4g27680 MSP1 protein, putative/intramitochondrial sorting protein, putative similar to Swiss-Prot: P28737 MSP1 protein (TAT-binding homolog 4) [Saccharomyces cerevisiae]; contains Pfam domain, PF00004: ATPase, AAA family (68417.m03980) 3024 Not regulated NC-NC-NC 253834_at At4g27800 protein phosphatase 2C PPH1/PP2C PPH1 (PPH1) identical to SP|P49599|P2C3_ARATH Protein phosphatase 2C PPH1 (EC 3.1.3.16) (PP2C) {Arabidopsis thaliana}; similar to protein phosphatase-2C; PP2C (GI: 3643090) [Mesembryanthemum crystallinum] (68417.m03992) 3025 Not regulated NC-NC-NC 253838_at At4g27880 seven in absentia (SINA) family protein similar to siah-1A protein [Mus musculus] GI: 297035; contains Pfam profile PF03145: Seven in absentia protein family (68417.m04002) 3026 Not regulated NC-NC-NC 253841_at At4g27830 glycosyl hydrolase family 1 protein contains Pfam PF00232: Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6- phospho-beta-galactosidase; similar to hydroxyisourate hydrolase (GI: 19569603) [Glycine max] (68417.m03997) 3027 Not regulated NC-NC-NC 253855_at At4g28050 senescence-associated protein, putative similar to senescence-associated protein 5 [Hemerocallis hybrid cultivar] gi|3551954|gb|AAC34855 (68417.m04024) 3028 Not regulated NC-NC-NC 253857_at At4g27990 YGGT family protein contains Pfam profile PF02325: YGGT family (unknown function) (68417.m04015) 3029 Not regulated NC-NC-NC 253823_at At4g28030 GCN5-related N-acetyltransferase (GNAT) family protein contains Pfam profile PF00583: acetyltransferase, GNAT family (68417.m04021) 3030 Not regulated NC-NC-NC 253803_at At4g28200 expressed protein (68417.m04042) 3031 Not regulated NC-NC-NC 253805_at At4g28260 expressed protein (68417.m04048) 3032 Not regulated NC-NC-NC 253808_at At4g28300 hydroxyproline-rich glycoprotein family protein (68417.m04052) 3033 Not regulated NC-NC-NC 253810_at At4g28220 NADH dehydrogenase-related similar to 64 kDa mitochondrial NADH dehydrogenase [Neurospora crassa] GI: 4753821, alternative NADH-dehydrogenase [Yarrowia lipolytica] GI: 3718005; contains Pfam profile PF00070: Pyridine nucleotide-disulphide oxidoreductase (68417.m04044) 3034 Not regulated NC-NC-NC 253812_at At4g28240 wound-responsive protein-related wound-induced protein-tomato (fragment), PIR2: S19773 (68417.m04046) 3035 Not regulated NC-NC-NC 253816_at At4g28210 expressed protein (68417.m04043) 3036 Not regulated NC-NC-NC 253797_at At4g28470 26S proteasome regulatory subunit, putative contains Pfam domain PF01851: Proteasome/cyclosome repeat (68417.m04073) 3037 Not regulated NC-NC-NC 253773_s_at At4g28360 ribosomal protein L22 family protein (68417.m04059) 3038 Not regulated NC-NC-NC 253775_at At4g28440 DNA-binding protein-related contains weak similarity to C-quartet DNA binding protein 3 [Tetrahymena thermophila] gi|4583503|gb|AAD25098 (68417.m04070) 3039 Not regulated NC-NC-NC 253780_at At4g28400 protein phosphatase 2C, putative/PP2C, putative protein phosphatase 2C-fission yeast, PIR2: S54297 (68417.m04065) 3040 Not regulated NC-NC-NC 253783_at At4g28600 calmodulin-binding protein similar to pollen-specific calmodulin-binding protein MPCBP GI: 10086260 from [Zea mays] (68417.m04090) 3041 Not regulated NC-NC-NC 253784_at At4g28610 myb family transcription factor, putative/phosphate starvation response regulator, putative (PHR1) contains Pfam profile: PF00249 myb-like DNA-binding domain; identical to cDNA phosphate starvation response regulator 1 (phr1 gene) GI: 15384675 (68417.m04091) 3042 Not regulated NC-NC-NC 253790_at At4g28660 photosystem II reaction centre W (PsbW) family protein contains Pfam profile: PF03912 photosystem II reaction centre W protein, PsbW (68417.m04096) 3043 Not regulated NC-NC-NC 253765_at At4g28740 expressed protein (68417.m04110) 3044 Not regulated NC-NC-NC 253738_at At4g28750 photosystem I reaction center subunit IV, chloroplast, putative/PSI-E, putative (PSAE1) identical to SP|Q9S831; similar to SP|P12354 Photosystem I reaction center subunit IV, chloroplast precursor (PSI-E) {Spinacia oleracea}; contains Pfam profile PF02427: Photosystem I reaction centre subunit IV/PsaE (68417.m04111) 3045 Not regulated NC-NC-NC 253740_at At4g28706 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase (68417.m04103) 3046 Not regulated NC-NC-NC 253748_at At4g28990 RNA-binding protein-related contains weak similarity to Swiss-Prot: Q01844 RNA-binding protein EWS (EWS oncogene)(Ewing sarcoma breakpoint region 1 protein) [Homo sapiens] (68417.m04143) 3047 Not regulated NC-NC-NC 253749_at At4g29080 auxin-responsive AUX/IAA family protein similar to SP|Q38826 Auxin-responsive protein IAA8, SP|Q38827 Auxin-responsive protein IAA9 from Arabidopsis thaliana; contains Pfam profile: PF02309: AUX/IAA family (68417.m04161) 3048 Not regulated NC-NC-NC 253751_at At4g29070 expressed protein (68417.m04159) 3049 Not regulated NC-NC-NC 253752_at At4g28910 expressed protein (68417.m04131) 3050 Not regulated NC-NC-NC 253755_at At4g29040 26S proteasome AAA-ATPase subunit (RPT2a) almost identical to 26S proteasome AAA-ATPase subunit RPT2a (GI: 6652880) {Arabidopsis thaliana}; Drosophila melanogaster 26S proteasome subunit 4 ATPase, PID: g1066065 (68417.m04153) 3051 Not regulated NC-NC-NC 253756_at At4g28980 cyclin-dependent kinase-activating kinase 1At/CDK-activating kinase 1At (CAK1) identical to Cdk-activating kinase 1At [Arabidopsis thaliana] gi|3218550|dbj|BAA28775 (68417.m04139) 3052 Not regulated NC-NC-NC 253735_at At4g29160 SNF7 family protein contains Pfam domain, PF03357: SNF7 family (68417.m04172) 3053 Not regulated NC-NC-NC 253706_at At4g29120 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein similar to SP|P23523 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) (Tartronate semialdehyde reductase) {Escherichia coil}; contains Pfam profile PF03446: NAD binding domain of 6-phosphogluconate dehydrogenase (68417.m04168) 3054 Not regulated NC-NC-NC 253709_at At4g29220 phosphofructokinase family protein similar to phosphofructokinase [Amycolatopsis methanolica] GI: 17432243; contains Pfam profile PF00365: Phosphofructokinase (68417.m04180) 3055 Not regulated NC-NC-NC 253712_at At4g29330 Der1-like family protein/degradation in the ER-like family protein contains Pfam profile: PF04511 Der1-like family (68417.m04191) 3056 Not regulated NC-NC-NC 253715_at At4g29390 40S ribosomal protein S30 (RPS30B) RIBOSOMAL PROTEIN S30 - Arabidopsis thaliana, PID: e1358183 (68417.m04198) 3057 Not regulated NC-NC-NC 253720_at At4g29270 acid phosphatase class B family protein similar to acid phosphatase [Glycine max] GI: 3341443; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase (68417.m04185) 3058 Not regulated NC-NC-NC 253728_at At4g29410 60S ribosomal protein L28 (RPL28C) unknown protein chromosome II BAC F6F22 - Arabidopsis thaliana, PID: g3687251 (68417.m04200) 3059 Not regulated NC-NC-NC 253730_at At4g29480 mitochondrial ATP synthase g subunit family protein contains Pfam profile: PF04718 mitochondrial ATP synthase g subunit (68417.m04207) 3060 Not regulated NC-NC-NC 253731_at At4g29260 acid phosphatase class B family protein similar to acid phosphatase [Glycine max] GI: 3341443; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase (68417.m04184) 3061 Not regulated NC-NC-NC 253704_at At4g29500 prolidase-related contains similarity to prolidase GI: 3114966 from [Suberites domuncuta] (68417.m04209) 3062 Not regulated NC-NC-NC 253691_at At4g29660 expressed protein predicted proteins, Arabidopsis thaliana (68417.m04225) 3063 Not regulated NC-NC-NC 253692_at At4g29720 amine oxidase family protein similar to polyamine oxidase isoform-2 [Homo sapiens] GI: 16554963; contains Pfam profile PF01593: amine oxidase, flavin-containing (68417.m04232) 3064 Not regulated NC-NC-NC 253693_at At4g29670 thioredoxin family protein contains Pfam profile PF00085: Thioredoxin (68417.m04226) 3065 Not regulated NC-NC-NC 253694_at At4g29735 expressed protein contains Pfam domain PF05251: Uncharacterised protein family (UPF0197) (68417.m04234) 3066 Not regulated NC-NC-NC 253695_at At4g29510 protein arginine N-methyltransferase, putative similar to protein arginine N-methyltransferase 1-variant 2 [Homo sapiens] GI: 7453575 (68417.m04210) 3067 Not regulated NC-NC-NC 253700_at At4g29840 threonine synthase, chloroplast identical to SP|Q9S7B5 Threonine synthase, chloroplast precursor (EC 4.2.3.1) (TS) {Arabidopsis thaliana} (68417.m04247) 3068 Not regulated NC-NC-NC 253642_at At4g29960 expressed protein (68417.m04262) 3069 Not regulated NC-NC-NC 253644_at At4g29870 expressed protein predicted protein, Arabidopsis thaliana, PIR2: T01282 (68417.m04251) 3070 Not regulated NC-NC-NC 253645_at At4g29830 transducin family protein/WD-40 repeat family protein contains 7 WD-40 repeats (PF00400); G protein beta subunit-like protein, Schistosoma mansoni, gb: U30261 (68417.m04246) 3071 Not regulated NC-NC-NC 253646_at At4g29810 mitogen-activated protein kinase kinase (MAPKK) (MKK2) identical to MAP kinase kinase 2 [Arabidopsis thaliana] gi|3219267|dbj|BAA28828; mitogen-activated protein kinase kinase (MAPKK) family, PMID: 12119167 (68417.m04244) 3072 Not regulated NC-NC-NC 253647_at At4g29950 microtubule-associated protein identical to microtubule-associated protein GI: 5032258 from [Arabidopsis thaliana]; similar to TBC1 domain family member 5 (Swiss-Prot: Q92609) [Homo sapiens]; contains Pfam profile PF00566: TBC domain (68417.m04260) 3073 Not regulated NC-NC-NC 253668_at At4g30220 small nuclear ribonucleoprotein F, putative/snRNP-F, putative/Srn protein F, putative similar to SWISS-PROT: Q15356 small nuclear ribonucleoprotein F (snRNP-F, Srn protein F, Srn-F, SrnF) [Mouse] (68417.m04298) 3074 Not regulated NC-NC-NC 253610_at At4g30200 expressed protein contains weak similarities to Pfam profiles: PF00041 Fibronectin type III domain, PF00628 PHD-finger, supporting cDNA gi|11177136|dbj|AB050977.1| (68417.m04293) 3075 Not regulated NC-NC-NC 253612_at At4g30310 ribitol kinase, putative similar to ribitol kinase [Klebsiella pneumoniae] gi|2905643|gb|AAC26495 (68417.m04307) 3076 Not regulated NC-NC-NC 253618_at At4g30420 nodulin MtN21 family protein similar to MtN21 [Medicago truncatula] GI: 2598575; contains Pfam profile PF00892: Integral membrane protein (68417.m04321) 3077 Not regulated NC-NC-NC 253624_at At4g30580 phospholipid/glycerol acyltransferase family protein (68417.m04339) 3078 Not regulated NC-NC-NC 253625_at At4g30600 signal recognition particle receptor alpha subunit family protein similar to Signal recognition particle receptor alpha subunit (SR- alpha) (Docking protein alpha) (DP-alpha) (SP: P08240) [Homo sapiens]; similar to Signal recognition particle receptor alpha subunit (SR-alpha) (Docking protein alpha) (DP-alpha) (SP: P06625) [Canis familiaris]; contains Pfam PF04086: Signal recognition particle, alpha subunit, N-terminal; contains Pfam PF00448: SRP54-type protein, GTPase domain (68417.m04341) 3079 Not regulated NC-NC-NC 253629_at At4g30450 glycine-rich protein (68417.m04324) 3080 Not regulated NC-NC-NC 253633_at At4g30480 tetratricopeptide repeat (TPR)-containing protein similar to SP|Q99614 Tetratricopeptide repeat protein 1 {Homo sapiens}; contains Pfam profile PF00515: TPR Domain (68417.m04327) 3081 Not regulated NC-NC-NC 253637_at At4g30390 expressed protein (68417.m04317) 3082 Not regulated NC-NC-NC 253639_at At4g30550 glutamine amidotransferase class-I domain-containing protein similar to defense-related protein [Brassica carinata] GI: 14009290, component of aniline dioxygenase (GMP synthase like protein) - Acinetobacter sp., PID: d1013698; contains Pfam profile PF00117: glutamine amidotransferase class-I (68417.m04336) 3083 Not regulated NC-NC-NC 253579_at At4g30610 serine carboxypeptidase S10 family protein similar to Serine carboxypeptidase II chains A and B (SP: P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)]; (68417.m04342) 3084 Not regulated NC-NC-NC 253592_at At4g30840 WD-40 repeat protein family (68417.m04375) 3085 Not regulated NC-NC-NC 253593_at At4g30760 expressed protein contains Pfam profile PF04396: Protein of unknown function, DUF537 (68417.m04358) 3086 Not regulated NC-NC-NC 253597_at At4g30690 translation initiation factor 3 (IF-3) family protein similar to SP|P33319 Translation initiation factor IF-3 {Proteus vulgaris}; contains Pfam profiles PF00707: Translation initiation factor IF-3, C-terminal domain, PF05198: Translation initiation factor IF-3, N-terminal domain (68417.m04350) 3087 Not regulated NC-NC-NC 253603_at At4g30935 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA-binding domain (68417.m04392) 3088 Not regulated NC-NC-NC 253547_at At4g30950 omega-6 fatty acid desaturase, chloroplast (FAD6) (FADC) identical to GI: 493068 (68417.m04394) 3089 Not regulated NC-NC-NC 253548_at At4g30993 expressed protein (68417.m04399) 3090 Not regulated NC-NC-NC 253549_at At4g30930 50S ribosomal protein L21, mitochondrial (RPL21M) identical to SP|Q8L9A0 50S ribosomal protein L21, mitochondrial precursor {Arabidopsis thaliana} (68417.m04391) 3091 Not regulated NC-NC-NC 253552_at At4g30890 ubiquitin-specific protease 24, putative (UBP24) identical to ubiquitin-specific protease 24 [Arabidopsis thaliana] GI: 11993488 (68417.m04386) 3092 Not regulated NC-NC-NC 253555_at At4g31090 expressed protein (68417.m04413) 3093 Not regulated NC-NC-NC 253558_at At4g31120 Skb1 methyltransferase family protein contains Pfam profile: PF05185 Skb1 methyltransferase (68417.m04417) 3094 Not regulated NC-NC-NC 253566_at At4g31210 DNA topoisomerase family protein similar to DNA Topoisomerase I (SP: Q9X3X7) {Zymomonas mobilis} (68417.m04432) 3095 Not regulated NC-NC-NC 253545_at At4g31310 avirulence-responsive protein-related/avirulence induced gene (AIG) protein-related similar to SP|P54121 AIG2 protein {Arabidopsis thaliana} (68417.m04442) 3096 Not regulated NC-NC-NC 253522_at At4g31290 ChaC-like family protein contains Pfam profile: PF04752 ChaC-like protein (68417.m04440) 3097 Not regulated NC-NC-NC 253523_at At4g31340 myosin heavy chain-related contains weak similarity to Myosin heavy chain, nonmuscle type A (Cellular myosin heavy chain, type A) (Nonmuscle myosin heavy chain-A) (NMMHC-A) (Swiss-Prot: P35579) [Homo sapiens] (68417.m04445) 3098 Not regulated NC-NC-NC 253526_at At4g31420 zinc finger (C2H2 type) family protein contains Pfam profile: PF00096 zinc finger, C2H2 type (68417.m04480) 3099 Not regulated NC-NC-NC 253530_at At4g31530 expressed protein (68417.m04477) 3100 Not regulated NC-NC-NC 253533_at At4g31590 glycosyl transferase family 2 protein similar to cellulose synthase from Agrobacterium tumeficiens [gi: 710492] and Agrobacterium radiobacter [gi: 710493]; contains Pfam glycosyl transferase, group 2 family protein domain PF00535 (68417.m04487) 3101 Not regulated NC-NC-NC 253535_at At4g31550 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA-binding domain (68417.m04479) 3102 Not regulated NC-NC-NC 253537_at At4g31560 expressed protein (68417.m04482) 3103 Not regulated NC-NC-NC 253538_at At4g31460 ribosomal protein L28 family protein ribosomal protein YmL14 precursor, mitochondrial - Saccharomyces cerevisiae, PIR2: S50921 (68417.m04470) 3104 Not regulated NC-NC-NC 253539_at At4g31450 zinc finger (C3HC4-type RING finger) family protein similar to Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) (68417.m04469) 3105 Not regulated NC-NC-NC 253512_at At4g31750 protein phosphatase 2C, putative/PP2C, putative protein phosphatase 2C, Medicago sativa, PID: g2582800 (68417.m04506) 3106 Not regulated NC-NC-NC 253484_at At4g31720 transcription initiation factor IID (TFIID) 23-30 kDa subunit (TAF2H) family protein contains Pfam profile: PF03540 transcription initiation factor TFIID 23-30 kDa (68417.m04502) 3107 Not regulated NC-NC-NC 253486_at At4g31600 UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-related contains weak similarity to UDP-glucuronic acid/UDP-N- acetylgalactosamine transporter (UDP-GlcA/UDP-GalNAc transporter) (Swiss-Prot: Q9NTN3) [Homo sapiens] (68417: m04469) 3108 Not regulated NC-NC-NC 253489_at At4g31780 1,2-diacylglycerol 3-beta-galactosyltransferase, putative/monogalactosyldiacylglycerol synthase, putative/MGDG synthase, putative similar to MGD synthase type A from Arabidopsis thaliana [gi: 9927297], similar to monogalactosyldiacylglycerol synthase, Cucumis sativus, PID: g1805254 (68417.m04509) 3109 Not regulated NC-NC-NC 253490_at At4g31790 diphthine synthase, putative (DPH5) similar to Diphthine synthase (Diphtamide biosynthesis methyltransferase) (DPH5) (SP: P32469) [Saccharomyces cerevisiae]; similar to CGI-30 protein (GI: 4680699) [Homo sapiens]: similar to methyltransferase DPH5, Saccharomyces cerevisiae, PIR2: S30890; contains Pfam PF00590: Tetrapyrrole (Corrin/Porphyrin) Methylases domain: contains TIGRFAMS TIGR00522: diphthine synthase (68417.m04513) 3110 Not regulated NC-NC-NC 253496_at At4g31870 glutathione peroxidase, putative glutathione peroxidase, Arabidopsis thaliana, PIR2: S71250 (68417.m04528) 3111 Not regulated NC-NC-NC 253497_at At4g31880 expressed protein (68417.m04531) 3112 Not regulated NC-NC-NC 253506_at At4g31980 expressed protein contains Pfam profile PF03140: Plant protein of unknown function (68417.m04547) 3113 Not regulated NC-NC-NC 253480_at At4g31840 plastocyanin-like domain-containing protein (68417.m04524) 3114 Not regulated NC-NC-NC 253453_at At4g31860 protein phosphatase 2C, putative/PP2C, putative protein phosphatase 2C, Schizosaccharomyces pombe, PIR2: S54297 (68417.m04526) 3115 Not regulated NC-NC-NC 253460_at At4g32130 expressed protein (68417.m04571) 3116 Not regulated NC-NC-NC 253466_at At4g32040 homeobox protein knotted-1 like 5 (KNAT5)/homeodomain containing protein 1 (H1) identical to homeobox protein knotted-1 like 5 (KNAT5) SP: P48002 from [Arabidopsis thaliana] (68417.m04561) 3117 Not regulated NC-NC-NC 253467_at At4g32140 expressed protein (68417.m04572) 3118 Not regulated NC-NC-NC 253468_at At4g32160 phox (PX) domain-containing protein contains Pfam profile PF00767: PX domain (68417.m04574) 3119 Not regulated NC-NC-NC 253469_at At4g32180 eukaryotic pantothenate kinase family protein similar to pantothenate kinase [Emericella nidulans] GI: 4191500; contains Pfam profiles PF03630: Fumble, PF01937: Protein of unknown function (68417.m04580) 3120 Not regulated NC-NC-NC 253470_s_at At4g32210 3121 Not regulated NC-NC-NC 253473_at At4g32250 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68417.m04588) 3122 Not regulated NC-NC-NC 253474_at At4g32270 UDP-sugar transporter-related contains weak similarity to Swiss-Prot: Q95YI5 UDP-sugar transporter UST74c [Drosophila melanogaster] (68417.m04591) 3123 Not regulated NC-NC-NC 253477_at At4g32320 peroxidase family protein similar to L-ascorbate peroxidase [Arabidopsis thaliana] gi|1523789|emb|CAA66925; contains Pfam profile PF00141: Peroxidase (68417.m04597) 3124 Not regulated NC-NC-NC 253420_at At4g32260 ATP synthase family contains Pfam profile: PF00430 ATP synthase B/B′ CF(0); identical to cDNA chloroplast ATP synthase beta chain precursor (atpG) GI: 5730140 (68417.m04590) 3125 Not regulated NC-NC-NC 253422_at At4g32240 expressed protein (68417.m04587) 3126 Not regulated NC-NC-NC 253424_at At4g32330 expressed protein (68417.m04599) 3127 Not regulated NC-NC-NC 253425_at At4g32190 centromeric protein-related low similarity to SP|Q02224 Centromeric protein E (CENP-E protein) {Homo sapiens} (68417.m04581) 3128 Not regulated NC-NC-NC 253427_at At4g32390 phosphate translocator-related low similarity to phosphoenolpyruvate/phosphate translocator precursor [Mesembryanthemum crystallinum] GI: 9295275, SP|P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea} (68417.m04612) 3129 Not regulated NC-NC-NC 253435_at At4g32400 mitochondrial substrate carrier family protein (68417.m04613) 3130 Not regulated NC-NC-NC 253436_at At4g32470 ubiquinol-cytochrome C reductase complex 14 kDa protein, putative similar to SP|P48502 Ubiquinol-cytochrome C reductase complex 14 kDa protein (EC 1.10.2.2) (CR14) (Solanum tuberosum); contains Pfam profile PF02271: Ubiquinol-cytochrome C reductase complex 14 kD subunit (68417.m04622) 3131 Not regulated NC-NC-NC 253437_at At4g32460 expressed protein contains Pfam profile PF04862: Protein of unknown function, DUF642 (68417.m04620) 3132 Not regulated NC-NC-NC 253438_at At4g32520 glycine hydroxymethyltransferase, putative/serine hydroxymethyltransferase, putative/serine/threonine aldolase, putative similar to serine hydroxymethyltransferase [Chlamydomonas reinhardtii] GI: 17066746; contains Pfam profile PF00464: serine hydroxymethyltransferase (68417.m04629) 3133 Not regulated NC-NC-NC 253442_at At4g32530 vacuolar ATP synthase, putative/V-ATPase, putative SP|P23968 Vacuolar ATP synthase 22 kDa proteolipid subunit (EC 3.6.3.14) {Saccharomyces cerevisiae}; contains Pfam profile PF00137: ATP synthase subunit C (68417.m04631) 3134 Not regulated NC-NC-NC 253443_at At4g32551 WD-40 repeat family protein (LEUNIG) contains seven G-protein beta WD-40 repeats; beta transducin-like protein, Podospora anserina, gb: L28125; contains Pfam profiles PF04503: Single-stranded DNA binding protein, SSDP; PF00400; WD domain, G-beta repeat; identical to cDNA LEUNIG (LEUNIG) GI: 11141604 (68417.m04633) 3135 Not regulated NC-NC-NC 253444_at At4g32600 zinc finger (C3HC4-type RING finger) family protein low similarity to RING finger protein 38 [Homo sapiens] GI: 21666412; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) (68417.m04642) 3136 Not regulated NC-NC-NC 253391_at At4g32590 ferredoxin-related contains Pfam profile: PF00111 2Fe—2S iron-sulfur cluster binding domain (68417.m04639) 3137 Not regulated NC-NC-NC 253392_at At4g32650 inward rectifying potassium channel, putative (KAT3) (AKT4) (KC1) identical to K+ inward rectifying channel protein KC1 [Arabidopsis thaliana] gi|4090537|gb|AAC98810; similar to (KAT1) K+ channel [Arabidopsis thaliana] gi|1165000|emb|CAA3601; Shaker-type channel (1P/6TM), PMID: 11500563 (68417.m04647) 3138 Not regulated NC-NC-NC 253394_at At4g32770 tocopherol cyclase, chloroplast/vitamin E deficient 1 (VTE1)/sucrose export defective 1 (SXD1) identical to SP|Q94FY7 Tocopherol cyclase, chloroplast precursor (Vitamin E deficient 1) (Sucrose export defective 1) {Arabidopsis thaliana} (68417.m04662) 3139 Not regulated NC-NC-NC 253395_at At4g32660 protein kinase (AFC3) (AME3) identical to protein kinase AFC3 [Arabidopsis thaliana] SWISS-PROT: P51568 (68417.m04649) 3140 Not regulated NC-NC-NC 253403_at At4g32830 protein kinase, putative similar to protein kinase p46XIEg22 [Xenopus laevis] gi|609280|emb|CAA78914; contains protein kinase domain, Pfam: PF00069 (68417.m04669) 3141 Not regulated NC-NC-NC 253412_at At4g33000 calcineurin B-like protein 10 (CBL10) identical to calcineurin B-like protein 10 [Arabidopsis thaliana] GI: 29150248 (68417.m04693) 3142 Not regulated NC-NC-NC 253384_at At4g32915 expressed protein (68417.m04684) 3143 Not regulated NC-NC-NC 253385_at At4g32930 expressed protein predicted protein, Caenorhabditis elegans, gb: Z70780 (68417.m04686) 3144 Not regulated NC-NC-NC 253386_at At4g33030 UDP-sulfoquinovose synthase/sulfite:UDP-glucose sulfotransferase/sulfolipid biosynthesis protein (SQD1) identical to gi: 2736155 (68417.m04699) 3145 Not regulated NC-NC-NC 253388_at At4g32910 expressed protein (68417.m04683) 3146 Not regulated NC-NC-NC 253361_at At4g33100 expressed protein contains Pfam PF05254: Uncharacterised protein family (UPF0203) (68417.m04716) 3147 Not regulated NC-NC-NC 253362_s_at At4g33110 coclaurine N-methyltransferase, putative similar to coclaurine N-methyltransferase [Coptis japonica] GI: 16754879; contains Pfam profile PF02353: Cyclopropane-fatty-acyl-phospholipid synthase (68417.m04717) 3148 Not regulated NC-NC-NC 253367_at At4g33190 3149 Not regulated NC-NC-NC 253368_at At4g33200 myosin, putative similar to myosin (GI: 433663) [Arabidopsis thaliana] (68417.m04727) 3150 Not regulated NC-NC-NC 253369_at At4g33210 F-box family protein (FBL15) contains similarity to F-box protein FBL2 GI: 6063090 from [Homo sapiens] (68417.m04728) 3151 Not regulated NC-NC-NC 253373_at At4g33150 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme identical to lysine-ketoglutarate reductase/saccharopine dehydrogenase GI: 2052508 from [Arabidopsis thaliana] (68417.m04722) 3152 Not regulated NC-NC-NC 253355_at At4g33380 expressed protein (68417.m04745) 3153 Not regulated NC-NC-NC 253332_at At4g33420 peroxidase, putative identical to class III peroxidase ATP32 [Arabidopsis thaliana] gi|17530547|gb|AAL40837; identical to cDNA class III peroxidase ATP32 GI: 17530546 (68417.m04749) 3154 Not regulated NC-NC-NC 253333_at At4g33510 2-dehydro-3-deoxyphosphoheptonate aldolase 2/3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2/DAHP synthetase 2 (DHS2) nearly identical to SP|Q00218 (68417.m04759) 3155 Not regulated NC-NC-NC 253334_at At4g33360 terpene cyclase/mutase-related low similarity to squalene-hopene cyclase from Zymomonas mobilis [SP|P33990] (68417.m04743) 3156 Not regulated NC-NC-NC 253336_at At4g33250 eukaryotic translation initiation factor 3 subunit 11/eIF-3 p25/eIF3k (TIF3K1) identical to Swiss-Prot: Q9SZA3 eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) (eIF3k) [Arabidopsis thaliana]; identical to cDNA initiation factor 3k GI: 12407752 (68417.m04732) 3157 Not regulated NC-NC-NC 253338_at At4g33430 brassinosteroid insensitive 1-associated receptor kinase 1 (BAK1)/somatic embryogenesis receptor-like kinase 3 (SERK3) identical to SP|Q94F62 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor (EC 2.7.1.37) (BRI1- associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) {Arabidopsis thaliana}; contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain; identical to cDNA somatic embryogenesis receptor-like kinase 3 (SERK3) GI: 14573458 (68417.m04750) 3158 Not regulated NC-NC-NC 253341_at At4g33410 signal peptide peptidase family protein contains Pfam domain PF04258: Membrane protein of unknown function (DUF435) (68417.m04748) 3159 Not regulated NC-NC-NC 253342_at At4g33520 metal-transporting P-type ATPase, putative (PAA1) nearly identical to gi: 2668492; contains Pfam heavy-metal-associated domain PF00403 (68417.m04760) 3160 Not regulated NC-NC-NC 253343_at At4g33540 metallo-beta-lactamase family protein (68417.m04767) 3161 Not regulated NC-NC-NC 253294_at At4g33750 expressed protein (68417.m04792) 3162 Not regulated NC-NC-NC 253302_at At4g33660 expressed protein (68417.m04761) 3163 Not regulated NC-NC-NC 253303_at At4g33780 expressed protein (68417.m04795) 3164 Not regulated NC-NC-NC 253306_at At4g33650 dynamin-like protein 2a (ADL2a) identical to dynamin like protein 2a (ADL2a) [Arabidopsis thaliana] GI: 19032337; supported by cDNA gi: 19032336 (68417.m04780) 3165 Not regulated NC-NC-NC 253307_at At4g33670 L-galactose dehydrogenase (L-GalDH) identical to L-galactose dehydrogenase [Arabidopsis thaliana] GI: 16555790; similar to L- fucose dehydrogenase [Pseudomonas sp.] GI: 829054; contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family (68417.m04783) 3166 Not regulated NC-NC-NC 253310_at At4g33630 expressed protein (68417.m04777) 3167 Not regulated NC-NC-NC 253317_at At4g33960 expressed protein (68417.m04819) 3168 Not regulated NC-NC-NC 253321_at At4g33910 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to prolyl 4-hydroxylase, alpha subunit, from Gallus gallus [GI: 212530], Rattus norvegicus [GI: 474940], Drosophila melanogaster [GI: 4336512]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain (68417.m04812) 3169 Not regulated NC-NC-NC 253323_at At4g33920 protein phosphatase 2C family protein/PP2C family protein similar to Ser/Thr protein phosphatase 2C (PP2C6) (GI: 15020818) [Arabidopsis thaliana]; similar to protein phosphatase 2C (GI: 3608412) [Mesembryanthemum crystallinum]; contains Pfam PF00481: Protein phosphatase 2C domain (68417.m04813) 3170 Not regulated NC-NC-NC 253264_at At4g33950 protein kinase, putative similar to abscisic acid-activated protein kinase [Vicia faba] gi|6739629|gb|AAF27340; contains protein kinase domain, Pfam: PF00069 (68417.m04818) 3171 Not regulated NC-NC-NC 253265_at At4g34040 zinc finger (C3HC4-type RING finger) family protein similar to Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) (68417.m04830) 3172 Not regulated NC-NC-NC 253267_at At4g34100 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68417.m04838) 3173 Not regulated NC-NC-NC 253272_at At4g34190 stress enhanced protein 1 (SEP1) identical to stress enhanced protein 1 (SEP1) GI: 7384978 from [Arabidopsis thaliana] (68417.m04852) 3174 Not regulated NC-NC-NC 253275_at At4g34215 expressed protein (68417.m04858) 3175 Not regulated NC-NC-NC 253278_at At4g34220 leucine-rich repeat transmembrane protein kinase, putative protein kinase TMKL1, Arabidopsis thaliana, PID: E353150 (68417.m04862) 3176 Not regulated NC-NC-NC 253282_at At4g34120 CBS domain-containing protein contains Pfam profile PF00571: CBS domain (68417.m04840) 3177 Not regulated NC-NC-NC 253283_at At4g34090 expressed protein (68417.m04836) 3178 Not regulated NC-NC-NC 253286_at At4g34260 expressed protein (68417.m04869) 3179 Not regulated NC-NC-NC 253257_at At4g34390 extra-large guanine nucleotide binding protein, putative/G-protein, putative similar to extra-large G-protein (XLG) [Arabidopsis thaliana] GI: 3201680, contains Pfam profile PF00503: G-protein alpha subunit (68417.m04885) 3180 Not regulated NC-NC-NC 253234_at At4g34265 expressed protein (68417.m04870) 3181 Not regulated NC-NC-NC 253235_at At4g34350 LytB family protein contains Pfam profile: PF02401 LytB protein (68417.m04881) 3182 Not regulated NC-NC-NC 253237_at At4g34240 aldehyde dehydrogenase (ALDH3) similar to aldehyde dehydrogenase [Arabidopsis thaliana] gi|17065876|emb|CAC84903; contains Pfam profile PF00171: aldehyde dehydrogenase (NAD) family protein: identical to cDNA aldehyde dehydrogenase (ALDH3 gene) GI: 17065875, aldehyde dehydrogenase [Arabidopsis thaliana] GI: 17065876 (68417.m04886) 3183 Not regulated NC-NC-NC 253248_at At4g34670 40S ribosomal protein S3A (RPS3aB) (68417.m04922) 3184 Not regulated NC-NC-NC 253251_at At4g34730 ribosome-binding factor A family protein contains PFam PF02033: Ribosome-binding factor A (68417.m04929) 3185 Not regulated NC-NC-NC 253255_at At4g34760 auxin-responsive family protein auxin-induced protein X15, Glycine max, PIR2: JQ1097 (68417.m04934) 3186 Not regulated NC-NC-NC 253228_at At4g34630 expressed protein (68417.m04918) 3187 Not regulated NC-NC-NC 253200_at At4g34720 vacuolar ATP synthase 16 kDa proteolipid subunit 1/V-ATPase 16 kDa proteolipid subunit 1 (AVAP1) (AVA-P1) identical to SP|P59227 Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16 kDa proteolipid subunit 1/3/5) {Arabidopsis thaliana}; contains Pfam profile PF00137: ATP synthase subunit C (68417.m04928) 3188 Not regulated NC-NC-NC 253204_at At4g34460 guanine nucleotide-binding protein beta subunit (GB1)/GTP-binding protein beta subunit (AGB1)/transducin contains 7 WD-40 repeats (PF00400); identical to Guanine nucleotide-binding protein beta subunit. SP: P49177 [Arabidopsis thaliana]; Weiss, CA et al, PNAS 91: 9954 (1994) (68417.m04898) 3189 Not regulated NC-NC-NC 253206_at At4g34640 farnesyl-diphosphate farnesyltransferase 1/squalene synthase 1 (SQS1) identical to SP|P53799 Farnesyl-diphosphate farnesyltransferase (EC 2.5.1.21) (Squalene synthetase) (SQS) (SS) (FPP:FPP farnesyltransferese) {Arabidopsis thaliana}; non- consensus GC donor splice site at exon 3, squalene synthase 2 (SQS2), Arabidopsis thaliana (68417.m04919) 3190 Not regulated NC-NC-NC 253212_s_at At4g34890 xanthine dehydrogenase, putative similar to xanthine dehydrogenase from Gallus gallus, PIR: XOCHDH [SP|P47990]; contains Pfam profile PF02738 Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain (68417.m04948) 3191 Not regulated NC-NC-NC 253220_s_at At4g34920 1-phosphatidylinositol phosphodiesterase-related contains weak similarity to 1-phosphatidylinositol phosphodiesterase precursor (EC 3.1.4.10) (Phosphatidylinositol-specific phospholipase C) (PI-PLC). (Swiss-Prot: P34024) [Listeria monocytogenes] (68417.m04951) 3192 Not regulated NC-NC-NC 253221_at At4g34870 peptidyl-prolyl cis-trans isomerase/cyclophilin (CYP1)/rotamase identical to cyclophilin (CYP1) gi|992643|gb|AAA75512; similar to peptidyl-prolyl cis-trans isomerase, PPlase (cyclophilin, cyclosporin A-binding protein) [Catharanthus roseus] SWISS- PROT: Q39613 (68417.m04946) 3193 Not regulated NC-NC-NC 253223_at At4g35000 L-ascorbate peroxidase 3 (APX3) identical to ascorbate peroxidase 3 [Arabidopsis thaliana] GI: 2444019, L-ascorbate peroxidase [Arabidopsis thaliana] gi|1523791|emb|CAA66926; similar to ascorbate peroxidase [Gossypium hirsutum] gi|1019946|gb|AAB52954 (68417.m04963) 3194 Not regulated NC-NC-NC 253225_at At4g35020 Rac-like GTP-binding protein (ARAC3)/Rho-like GTP-binding protein (ROP6) identical to SP|Q38912 RAC-like GTP binding protein ARAC3 (GTP-binding protein ROP6) {Arabidopsis thaliana}; identical to cDNA Rho-like GTP binding protein (Rop6) GI: 2645642 (68417.m04967) 3195 Not regulated NC-NC-NC 253171_at At4g35040 bZIP transcription factor family protein contains Pfam profile; PF00170 bZIP transcription factor (68417.m04972) 3196 Not regulated NC-NC-NC 253172_at At4g35060 heavy-metal-associated domain-containing protein/copper chaperone (CCH)-related low similarity to copper homeostasis factor [GI: 3168840][PMID: 9701579]; similar to farnesylated proteins GMFP7 [Glycine max][GI: 4097573] and ATFP6 [GI: 4097553]; contains heavy-metal-associated domain PF00403 (68417.m04977) 3197 Not regulated NC-NC-NC 253183_at At4g35220 cyclase family protein contains Pfam profile: PF04199 putative cyclase (68417.m05005) 3198 Not regulated NC-NC-NC 253184_at At4g35230 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68417.m05007) 3199 Not regulated NC-NC-NC 253188_at At4g35300 transporter-related low similarity to hexose transporter [Solanum tuberosum] GI: 8347246; contains Pfam profile PF00083: major facilitator superfamily protein (68417.m05017) 3200 Not regulated NC-NC-NC 253197_at At4g35250 vestitone reductase-related low similarity to vestitone reductase [Medicago sativa subsp. sativa] GI: 973249 (68417.m05010) 3201 Not regulated NC-NC-NC 253138_al At4g35490 ribosomal protein L11 family protein several ribosomal proteins L11 (68417.m05043) 3202 Not regulated NC-NC-NC 253139_at At4g35450 ankyrin repeat family protein/AFT protein (AFT) contains ankyrin repeats, Pfam: PF00023; identical to cDNA AFT protein (AFT) GI: 3478699 (68417.m05036) 3203 Not regulated NC-NC-NC 253140_at At4g35480 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain PF00097: Zinc finger, C3HC4 type (RING finger) (68417.m05042) 3204 Not regulated NC-NC-NC 253147_at At4g35600 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68417.m05057) 3205 Not regulated NC-NC-NC 253159_at At4g35570 high mobility group protein delta (HMGdelta)/HMG protein delta identical to HMG protein (HMGdelta) [Arabidopsis thaliana] GI: 2832363 (68417.m05054) 3206 Not regulated NC-NC-NC 253160_at At4g35760 expressed protein (68417.m05076) 3207 Not regulated NC-NC-NC 253109_at At4g35920 expressed protein contains Pfam profile PF04749: Protein of unknown function, DUF614; isoform contains AT-acceptor splice site at intron 8 (68417.m05105) 3208 Not regulated NC-NC-NC 253118_at At4g35950 Rac-like GTP-binding protein (ARAC6) identical to rac-like GTP binding protein Arac6 GI: 3406757 from [Arabidopsis thaliana] (68417.m05115) 3209 Not regulated NC-NC-NC 253119_at At4g35980 expressed protein (68417.m05119) 3210 Not regulated NC-NC-NC 253120_at At4g35790 phospholipase D delta/PLD delta (PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0 from [Arabidopsis thaliana]; supporting cDNA gi|11761141|dbj|AB031047.1| (68417.m05084) 3211 Not regulated NC-NC-NC 253121_at At4g35890 La domain-containing protein contains Pfam PF05383: La domain (68417.m05097) 3212 Not regulated NC-NC-NC 253104_at At4g36010 pathogenesis-related thaumatin family protein similar to receptor serine/threonine kinase PR5K [Arabidopsis thaliana] GI: 1235680; contains Pfam profile PF00314: Thaumatin family (68417.m05127) 3213 Not regulated NC-NC-NC 253081_at At4g36210 expressed protein contains Pfam PF05277: Protein of unknown function (DUF726) (68417.m05151) 3214 Not regulated NC-NC-NC 253088_at At4g36220 cytochrome P450 84A1 (CYP84A1)/ferulate-5-hydroxylase (FAH1) identical to Cytochrome P450 84A1 (Ferulate-5-hydroxylase) (SP|Q42600) [Arabidopsis thaliana] (68417.m05153) 3215 Not regulated NC-NC-NC 253093_at At4g37460 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515: TPR Domain (68417.m05302) 3216 Not regulated NC-NC-NC 253096_at At4g37330 cytochrome P450 family protein (68417.m05287) 3217 Not regulated NC-NC-NC 253042_at At4g37550 formamidase, putative/formamide amidohydrolase, putative similar to SP|Q50228 Formamidase (EC 3.5.1.49) (Formamide aminohydrolase) {Methylophilus methylotrophus}; contains Pfam profile PF03069: Acetamidase/Formamidase family (68417.m05314) 3218 Not regulated NC-NC-NC 253048_at At4g37560 formamidase, putative/formamide amidohydrolase, putative similar to SP|Q50228 Formamidase (EC 3.5.1.49) (Formamide amidohydrolase) {Methylophilus methylotrophus}; contains Pfam profile PF03069: Acetamidase/Formamidase family (68417.m05316) 3219 Not regulated NC-NC-NC 253052_at At4g37310 cytochrome P450, putative (68417.m05283) 3220 Not regulated NC-NC-NC 253059_s_at At4g38320 expressed protein contains Pfam domain, PF03006: Uncharacterised protein family (Hly-III/UPF0073) (68417.m05416) 3221 Not regulated NC-NC-NC 253063_at At4g37640 calcium-transporting ATPase 2, plasma membrane-type/Ca(2+)-ATPase isoform 2 (ACA2) identical to SP|O81108 Calcium- transporting ATPase 2, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 2) {Arabidopsis thaliana} (68417.m05324) 3222 Not regulated NC-NC-NC 253064_at At4g37730 bZIP transcription factor family protein contains Pfam profile: PF00170 bZIP transcription factor (68417.m05342) 3223 Not regulated NC-NC-NC 253038_at At4g37790 homeobox-leucine zipper protein 22 (HAT22)/HD-ZIP protein 22 identical to homeobox-leucine zipper protein HAT22 (HD-ZIP protein 22) (SP: P46604) [Arabidopsis thaliana] (68417.m05348) 3224 Not regulated NC-NC-NC 253041_at At4g37870 phosphoenolpyruvate carboxykinase [ATP], putative/PEP carboxykinase, putative/PEPCK, putative similar to phosphoenolpyruvate carboxykinase [Lycopersicon esculentum] GI: 16950587. SP|Q9SLZ0 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) {Zea mays}; contains Pfam profile PF01293: phosphoenolpyruvate carboxykinase (68417.m05356) 3225 Not regulated NC-NC-NC 253027_at At4g38150 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat (68417.m05386) 3226 Not regulated NC-NC-NC 253028_at At4g38160 mitochondrial transcription termination factor-related/mTERF-related contains Pfam profile PF02536: mTERF (68417.m05387) 3227 Not regulated NC-NC-NC 253033_at At4g38220 aminoacylase, putative/N-acyl-L-amino-acid amidohydrolase, putative similar to aminoacylase-1 (N-acyl-L-amino-acid amidohydrolase, ACY-1)[Homo sapiens] SWISS-PROT: Q03154 (68417.m05394) 3228 Not regulated NC-NC-NC 253006_at At4g38250 amino acid transporter family protein low similarity to lysosomal amino acid transporter 1 [Rattus norvegicus] GI: 14571904; contains Pfam profile PF01490: Transmembrane amino acid transporter protein (68417.m05402) 3229 Not regulated NC-NC-NC 253007_at At4g38090 expressed protein contains Pfam PF01205: Uncharacterized protein family UPF0029 (68417.m05379) 3230 Not regulated NC-NC-NC 253009_at At4g37930 glycine hydroxymethyltransferase/serine hydroxymethyltransferase/serine/threonine aldolase (SHM1) identical to serine hydroxymethyl transferase [Arabidopsis thaliana] GI: 6899945 (68417.m05363) 3231 Not regulated NC-NC-NC 252980_at At4g38040 exostosin family protein contains Pfam profile: PF03016 Exostosin family (68417.m05373) 3232 Not regulated NC-NC-NC 252981_at At4g38260 expressed protein contains Pfam PF05742: Protein of unknown function (DUF833) (68417.m05404) 3233 Not regulated NC-NC-NC 252982_at At4g38130 histone deacetylase (RPD3A) identical to SP|O22446 Histone deacetylase (HD) {Arabidopsis thaliana} (68417.m05384) 3234 Not regulated NC-NC-NC 252983_at At4g37980 mannitol dehydrogenase, putative (ELI3-1) identical to GI: 16267 (68417.m05367) 3235 Not regulated NC-NC-NC 252996_s_at At4g38460 geranylgeranyl pyrophosphate synthase, putative/GGPP synthetase, putative/farnesyltranstransferase, putative 65% similar to geranylgeranyl pyrophosphate synthase [GI: 413730]; (68417.m05434) 3236 Not regulated NC-NC-NC 252999_at At4g38500 expressed protein contains Pfam profile: PF04765 protein of unknown function (DUF616) (68417.m05444) 3237 Not regulated NC-NC-NC 253001_at At4g38490 expressed protein (68417.m05440) 3238 Not regulated NC-NC-NC 252975_s_at At4g38430 expressed protein contains Pfam profile PF03759: Domain of unknown function (DUF315) (68417.m05431) 3239 Not regulated NC-NC-NC 252976_s_at At4g38550 expressed protein (68417.m05458) 3240 Not regulated NC-NC-NC 252950_at At4g38690 1-phosphatidylinositol phosphodiesterase-related contains weak similarity to 1-phosphatidylinositol phosphodiesterase precursor (EC 4.6.1.13) (Phosphatidylinositol diacylglycerol-lyase) (Phosphatidylinositol-specific phospholipase C) (PI-PLC). (Swiss- Prot: P34024) [Listeria monocytogenes] (68417.m05479) 3241 Not regulated NC-NC-NC 252953_at At4g38570 CDP-diacylglycerol-inositol 3-phosphatidyltransferase, putative/phosphatidylinositol synthase, putative similar to phosphatidylinositol synthase (PIS1) - Arabidopsis thaliana, PID: e1313354 [gi: 3367632] (68417.m05460) 3242 Not regulated NC-NC-NC 252955_at At4g38630 26S proteasome regulatory subunit S5A (RPN10) identical to multiubiquitin chain binding protein (MBP1) SP: P55034, GI: 1165206 (68417.m05467) 3243 Not regulated NC-NC-NC 252956_at At4g38580 heavy-metal-associated domain-containing protein/copper chaperone (CCH)-related low similarity to copper homeostasis factor [PMID: 9701579][GI: 3168840]; nearly identical to farnesylated protein TFP6 [GI: 4097553]; contains Heavy-metal-associated domain PF00403 (68417.m05461) 3244 Not regulated NC-NC-NC 252959_at At4g38640 choline transporter-related contains weak similarity to CD92 protein [Homo sapiens] gi|16945323|emb|CAC82175 (68417.m05469) 3245 Not regulated NC-NC-NC 252968_at At4g38890 dihydrouridine synthase family protein contains Pfam domain, PF01207: Dihydrouridine synthase (Dus) (68417.m05508) 3246 Not regulated NC-NC-NC 252969_at At4g38900 bZIP protein vsf-1 protein, Lycopersicon esculentum, PIR2: S52203 (68417.m05510) 3247 Not regulated NC-NC-NC 252972_at At4g38840 auxin-responsive protein, putative auxin-inducible SAUR gene, Raphanus sativus, AB000708 (68417.m05499) 3248 Not regulated NC-NC-NC 252973_s_at At4g38740 peptidyl-prolyl cis-trans isomerase/cyclophilin/rotamase/cyclosporin A-binding protein (ROC1) identical to SP|P34790 Peptidyl- prolyl cis-trans isomerase (EC 5.2.1.8) (PPlase) (Rotamase) (Cyclophilin) (Cyclosporin A-binding protein) {Arabidopsis thaliana} (68417.m05487) 3249 Not regulated NC-NC-NC 252974_at At4g38800 phosphorylase family protein contains weak similarity to Swiss-Prot: O51931 nucleosidase [Includes: 5′-methylthioadenosine nucleosidase (EC 3.2.2.16); S-adenosylhomocysteine nucleosidase [Buchnera aphidicola] (68417.m05493) 3250 Not regulated NC-NC-NC 252915_at At4g38810 calcium-binding EF hand family protein contains INTERPRO: IPR002048 calcium-binding EF-hand domain (68417.m05494) 3251 Not regulated NC-NC-NC 252922_at At4g39040 expressed protein contains PF01985: Uncharacterised protein family (68417.m05529) 3252 Not regulated NC-NC-NC 252925_at At4g39100 PHD finger family protein/bromo-adjacent homology (BAH) domain-containing protein contains Pfam domain, PF00628: PHD- finger and PF01426: BAH domain (68417.m05538) 3253 Not regulated NC-NC-NC 252926_at At4g38920 vacuolar ATP synthase 16 kDa proteolipid subunit 3/V-ATPase 16 kDa proteolipid subunit 3 (AVAP3) (AVA-P3) identical to SP|P59227 Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16 kDa proteolipid subunit 1/3/5) {Arabidopsis thaliana}; contains Pfam profile PF00137: ATP synthase subunit C (68417.m05515) 3254 Not regulated NC-NC-NC 252929_at At4g38970 fructose-bisphosphate aldolase, putative strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) [GI: 4827251], Oryza sativa, PIR2: T02057 [SP|Q40677] (68417.m05521) 3255 Not regulated NC-NC-NC 252931_at At4g38930 ubiquitin fusion degradation UFD1 family protein similar to SP|P70362 Ubiquitin fusion degradation protein 1 homolog (UB fusion protein 1) {Mus musculus}; contains Pfam profile PF03152: Ubiquitin fusion degradation protein UFD1 (68417.m05516) 3256 Not regulated NC-NC-NC 252935_at At4g39150 DNAJ heat shock N-terminal domain-containing protein similar to SP|P39101 CAJ1 protein, Saccharomyces cerevisiae, PIR2: S48085; contains Pfam profile PF00226 DnaJ domain (68417.m05545) 3257 Not regulated NC-NC-NC 252939_at At4g39230 isoflavone reductase, putative similar to allergenic isoflavone reductase-like protein Bet v 6.0102 [Betula pendula][GI: 10764491]; contains Pfam profile PF02716: isoflavone reductase (68417.M05553) 3258 Not regulated NC-NC-NC 252945_at At4g39140 expressed protein (68417.m05541) 3259 Not regulated NC-NC-NC 252912_at At4g39200 40S ribosomal protein S25 (RPS25E) ribosomal protein S25, Lycopersicon esculentum, PIR2: S40089 (68417.m05550) 3260 Not regulated NC-NC-NC 252913_at At4g39220 RER1A protein identical to SP|O48670 RER1A protein (AtRER1A) {Arabidopsis thaliana} (68417.m05552) 3261 Not regulated NC-NC-NC 252884_at At4g39170 SEC14 cytosolic factor, putative/phosphoglyceride transfer protein, putative similar to phosphatidylinositol transfer-like protein IV (GI: 14486707) [Lotus japonicus] and phosphatidylinositol-phosphatidylcholine transfer protein SEC14, Yarrowia lipolytica, PIR2: S43745; contains Pfam PF00650: CRAL/TRIO domain; contains Pfam PF03765: CRAL/TRIO, N-terminus (68417.m05547) 3262 Not regulated NC-NC-NC 252887_at At4g39240 kelch repeat-containing F-box family protein similar to SKP1 interacting partner 6 [Arabidopsis thaliana] GI: 10716957; contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain (68417.m05555) 3263 Not regulated NC-NC-NC 252900_at At4g39540 shikimate kinase family protein similar to shikimate kinase precursor from Lycopersicon esculentum [SP|Q00497]; contains Pfam shikimate kinase domain PF01202 (88417.m05590) 3264 Not regulated NC-NC-NC 252903_at At4g39570 kelch repeat-containing F-box family protein contains F-box domain Pfam: PF00646 and Kelch motif Pfam: PF01344 (68417.m05595) 3265 Not regulated NC-NC-NC 252911_at At4g39510 cytochrome P450 family protein contains Pfam PF00067: Cytochrome P450; similar to Cytochrome P450 86A2 (SP: O23066) [Arabidopsis thaliana] (68417.m05587) 3266 Not regulated NC-NC-NC 252878_at At4g39460 mitochondrial substrate carrier family protein (68417.m05583) 3267 Not regulated NC-NC-NC 252879_at At4g39390 transporter-related low similarity to glucose-6-phosphate/phosphate-translocator precursor [Solanum tuberosum] GI: 2997593 (68417.m05575) 3268 Not regulated NC-NC-NC 252880_at At4g39730 lipid-associated family protein contains PLAT/LH2 (Polycystin-1, Lipoxygenase, Alpha-Toxin/Lipoxygenase homology) domain Pfam: PF01477 (68417.m05624) 3269 Not regulated NC-NC-NC 252883_at At4g39520 GTP-binding protein, putative similar to SP|Q9Y295 Developmentally regulated GTP-binding protein 1 (DRG 1) {Homo sapiens}; contains Pfam profiles PF02824: TGS domain, PF01018: GTP1/OBG family (68417.m05588) 3270 Not regulated NC-NC-NC 252856_at At4g39690 expressed protein (68417.m05616) 3271 Not regulated NC-NC-NC 252876_at At4g39970 haloacid dehalogenase-like hydrolase family protein low similarity to SP|P95649 CbbY protein {Rhodobacter sphaeroides} (68417.m05661) 3272 Not regulated NC-NC-NC 252850_at At4g39880 ribosomal protein L23 family protein contains Pfam profile PF00276: ribosomal protein L23 (68417.m05650) 3273 Not regulated NC-NC-NC 252852_at At4g39900 expressed protein (68417.m05652) 3274 Not regulated NC-NC-NC 252822_at At4g39955 hydrolase, alpha/beta fold family protein low similarity to SP|P24640|LIP3_MORSP Lipase 3 precursor (EC 3.1.1.3) (Triacylglycerol lipase) {Moraxelia sp}; contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68417.m05659) 3275 Not regulated NC-NC-NC 252823_at At4g40045 expressed protein (68417.m05670) 3276 Not regulated NC-NC-NC 252824_at At4g40030 histone H3.2 identical to Histone H3.2, minor Lolium temulentum SP|P11105, nearly identical to histone H3.2 Mus pahari GI: 515005: contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 (68417.m05667) 3277 Not regulated NC-NC-NC 252828_at At4g39960 DNAJ heat shock family protein similar to SP|Q9S5A3 Chaperone protein dnaJ {Listeria monocytogenes}; contains Pfam profiles PF00226 DnaJ domain, PF01556 DnaJ C terminal region, PF00684 DnaJ central domain (4 repeats) (68417.m05660) 3278 Not regulated NC-NC-NC 252829_at At4g40060 homeobox-leucine zipper protein 16 (HB-16)/HD-ZIP transcription factor 16 identical to homeodomain leucine-zipper protein ATHB 16 (GP: 5668909|) {Arabidopsis thaliana} (68417.m05672) 3279 Not regulated NC-NC-NC 252832_at At4g39910 ubiquitin-specific protease 3 (UBP3) identical to GI: 2347098 (68417.m05653) 3280 Not regulated NC-NC-NC 252745_at At3g43230 zinc finger (FYVE type) family protein contains Pfam domain PF01363: FYVE zinc finger (68416.m04563) 3281 Not regulated NC-NC-NC 252754_at At3g43510 3282 Not regulated NC-NC-NC 252723_at At3g43520 expressed protein contains Pfam profile PF03647: Uncharacterised protein family (UPF0136) (68416.m04614) 3283 Not regulated NC-NC-NC 252703_at At3g43740 leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam: PF00560, INTERPRO: IPR001611; contains similarity to somatic embryogenesis receptor-like kinase 2 [Arabidopsis thaliana] gi|14573457|gb|AAK68073 (68416.m04672) 3284 Not regulated NC-NC-NC 252711_at At3g43720 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 (68416.m04668) 3285 Not regulated NC-NC-NC 252667_at At3g44200 protein kinase family protein contains protein kinase domain, Pfam: PF00069: contains serine/threonine protein kinase domain, INTERPRO: IPR002290 (68416.m04739) 3286 Not regulated NC-NC-NC 252669_at At3g44100 MD-2-related lipid recognition domain-containing protein/ML domain-containing protein contains Pfam profile PF02221: ML domain (68416.m04726) 3287 Not regulated NC-NC-NC 252676_at At3g44280 expressed protein (68416.m04755) 3288 Not regulated NC-NC-NC 252677_at At3g44320 nitrilase 3 (NIT3) identical to SP|P46010 Nitrilase-3 (EC 3.5.5.1) {Arabidopsis thaliana} (68416.m04760) 3289 Not regulated NC-NC-NC 252678_s_at At3g44300 nitrilase-2 (NIT2) identical to SP|P32962 Nitrilase-2 (EC 3.5.5.1) {Arabidopsis thaliana} (68416.m04757) 3290 Not regulated NC-NC-NC 252680_at At3g44330 expressed protein (68416.m04763) 3291 Not regulated NC-NC-NC 252683_at At3g44380 expressed protein predicted proteins Arabidopsis thaliana (68416.m04768) 3292 Not regulated NC-NC-NC 252633_x_at At3g44490 histone deacetylase-related/HD-related similar to SP|O09106 Histone deacetylase 1 (HD1) {Mus musculus} (68416.m04782) 3293 Not regulated NC-NC-NC 252647_at At3g44620 low molecular weight phosphotyrosine protein phosphatase family protein contains Pfam profile: PF01451 low molecular weight phosphotyrosine protein phosphates-(68416.m04797) 3294 Not regulated NC-NC-NC 252601_s_at At3g45030 40S ribosomal protein S20 (RPS20A) 40S ribsomomal proteinS20, Arabidopsis thaliana, pir: T12992 (68416.m04851) 3295 Not regulated NC-NC-NC 252603_at At3g45050 expressed protein (68416.m04853) 3296 Not regulated NC-NC-NC 252619_at At3g45210 expressed protein contains Pfam profile PF04520: Protein of unknown function, DUF584 (68416.m04879) 3297 Not regulated NC-NC-NC 252573_at At3g45260 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type (68416.m04887) 3298 Not regulated NC-NC-NC 252587_at At3g45620 transducin family protein/WD-40 repeat family protein contains 7 WD-40 repeats; similar to PC326 protein (GI: 200241) (PIR2: S37694) [Mus musculus]; Human (H326) translated mRNA - Homo sapiens, EMBL: HS06631 (68416.m04927) 3299 Not regulated NC-NC-NC 252591_at At3g45600 senescence-associated family protein similar to senescence-associated protein 5 [Hemerocallis hybrid cultivar] gi|3551954|gb|AAC34855 (68416.m04925) 3300 Not regulated NC-NC-NC 252542_at At3g45770 oxidoreductase, zinc-binding dehydrogenase family protein similar to nuclear receptor binding factor-1 NRBF-1 - Rattus norvegicus, EMBL: AB015724: contains Pfam zinc-binding dehydrogenase domain PF00107 (68416.m04947) 3301 Not regulated NC-NC-NC 252548_at At3g45850 kinesin motor protein-related kinesin-related protein TKRP125, Nicotiana tabacum, PIR: T02017 (68416.m04962) 3302 Not regulated NC-NC-NC 252560_at At3g46030 histone H2B, putative strong similarity to histone H2B Arabidopsis thaliana GI: 2407802, Gossypium hirsutum SP|O22582, Lycopersicon esculentum GI: 3021489; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 (68416.m04980) 3303 Not regulated NC-NC-NC 252561_at At3g45980 histone H2B identical to histone H2B Arabidopsis thaliana GI: 2407802; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 (68416.m04975) 3304 Not regulated NC-NC-NC 252564_at At3g46010 actin-depolymerizing factor 1 (ADF1) identical to SP|Q39250 Actin-depolymerizing factor 1 (ADF-1) (AtADF1) {Arabidopsis thaliana} (68416.m04978) 3305 Not regulated NC-NC-NC 252565_at At3g46000 actin-depolymerizing factor, putative (ADF2) strong similarity to SP|Q9ZSK3 Actin-depolymerizing factor 4 (ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam profile PF00241: Cofilin/tropomyosin-type actin-binding protein (68416.m04977) 3306 Not regulated NC-NC-NC 252566_at At3g46040 40S ribosomal protein S15A (RPS15aD) cytoplasmic ribosomal protein S15a, Arabidopsis thaliana, EMBL: ATAF1412 (68416.m04981) 3307 Not regulated NC-NC-NC 252513_at At3g46220 expressed protein (68416.m05003) 3308 Not regulated NC-NC-NC 252514_at At3g46060 Ras-related protein (ARA-3)/small GTP-binding protein, putative identical to SP|P28186 Ras-related protein ARA-3 {Arabidopsis thaliana}; contains Pfam profile: PF00071 Ras family (68416.m04984) 3309 Not regulated NC-NC-NC 252516_at At3g46100 histidyl-tRNA synthetase/histidine-tRNA ligase identical to histidyl-tRNA synthetase [Arabidopsis thaliana] GI: 3659909 (68416.m04988) 3310 Not regulated NC-NC-NC 252524_at At3g46430 expressed protein (68416.m05033) 3311 Not regulated NC-NC-NC 252525_at At3g46450 SEC14 cytosolic factor family protein/phosphoglyceride transfer family protein contains Pfam PF00650: CRAL/TRIO domain; similar to polyphosphoinositide binding protein Ssh1p (GI: 12739044) {Glycine max} (68416.m05035) 3312 Not regulated NC-NC-NC 252527_at At3g46440 NAD-dependent epimerase/dehydratase family protein similar to UDP-glucuronic acid decarboxylase Uxs1p from Filobasidielia neoformans GI: 14318327; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family (68416.m05034) 3313 Not regulated NC-NC-NC 252528_at At3g46460 ubiquitin-conjugating enzyme 13 (UBC13) E2; identical to gi: 992706 (68416.m05037) 3314 Not regulated NC-NC-NC 252504_at At3g46590 telomere repeat-binding protein, putative similar to telomere repeat-binding protein TRP1 [Arabidopsis thaliana] gi|5459298|emb|CAB50690 (68416.m05057) 3315 Not regulated NC-NC-NC 252478_at At3g46540 epsin N-terminal homology (ENTH) domain-containing protein/clathrin assembly protein-related contains Pfam PF01417: ENTH domain. ENTH (Epsin N-terminal homology) domain; similar to Chain A Of The Epsin N-Terminal Homology (Enth) Domain (GI: 8569264) [Rattus Norvegicus]; similar to Af10-protein (GI: 1724114) [Avena fatus] (68416.m05052) 3316 Not regulated NC-NC-NC 252481_at At3g46630 expressed protein contains similarity to defective chloroplasts and leaves protein SP: Q42483 from [Lycopersicon esculentum] (68418.m05062) 3317 Not regulated NC-NC-NC 252471_at At3g46820 serine/threonine protein phosphates-PP1 isozyme 5 (TOPP5)/phosphoprotein phosphatase 1 identical to SP|P48485 Serine/threonine protein phosphatase PP1 isozyme 5 (EC 3.1.3.16) {Arabidopsis thaliana}, phosphoprotein phosphatase 1 GI: 166803 {Arabidopsis thaliana} (68416.m05082) 3318 Not regulated NC-NC-NC 252442_at At3g46940 deoxyuridine 5′-triphosphate nucleotidohydrolase family contains Pfam profile: PF00692 deoxyuridine 5′-triphosphate nucleotidohydrotase (68416.m05095) 3319 Not regulated NC-NC-NC 252444_at At3g46980 transporter-related low similarity to brain specific Na+-dependent inorganic phosphate cotransporter from [Rattus norvegicus] GI: 507415, [Homo sapiens] GI: 7328925, vesicular glutamate transporter 3 from [Rattus norvegicus] GI: 21685382; contains Pfam profile PF00083: major facilitator superfamily protein (68416.m05101) 3320 Not regulated NC-NC-NC 252445_at At3g47000 glycosyl hydrolase family 3 protein beta-D-glucan exohydrolase, Nicotiana tabacum, TREMBL: AB017502_1 (68416.m05104) 3321 Not regulated NC-NC-NC 252462_at At3g47250 expressed protein contains Pfam profile PF03140: Plant protein of unknown function (68416.m05130) 3322 Not regulated NC-NC-NC 252464_at At3g47160 expressed protein similar to MTD2 [Medicago truncatula] GI: 9294812; supporting cDNA gi|25083983|gb|BT002136.1| (68416.m05120) 3323 Not regulated NC-NC-NC 252467_at At3g47080 expressed protein (68416.m05112) 3324 Not regulated NC-NC-NC 252411_at At3g47430 peroxisomal biogenesis factor 11 family protein/PEX11 family protein contains Pfam PF05648: Peroxisomal biogenesis factor 11 (PEX11) (68416.m05157) 3325 Not regulated NC-NC-NC 252418_at At3g47490 HNH endonuclease domain-containing protein contains Pfam domain PF01844: HNH endonuclease (68416.m05164) 3326 Not regulated NC-NC-NC 252421_at At3g47540 chitinase, putative similar to basic endochitinase CHB4 precursor SP: Q06209 from [Brassica napus] (68416.m05170) 3327 Not regulated NC-NC-NC 252423_at At3g47590 esterase/lipase/thioesterase family protein low similarity to cinnamoyl ester hydrolase Cinl [Butyrivibrio fibrisolvens] GI: 1622732; contains Interpro entry IPR000379 (68416.m05181) 3328 Not regulated NC-NC-NC 252427_at At3g47640 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain (68416.m05186) 3329 Not regulated NC-NC-NC 252430_at At3g47470 chlorophyll A-B binding protein 4, chloroplast/LHCI type III CAB-4 (CAB4) identical to SP|P27521 Chlorophyll A-B binding protein 4, chloroplast precursor (LHCI type III CAB-4) (LHCP) {Arabidopsis thaliana} (68416.m05162) 3330 Not regulated NC-NC-NC 252433_at At3g47560 esterase/lipase/thioesterase family protein low similarity to cinnamoyl ester hydrolase Cinl [Butyrivibrio fibrisolvens] GI: 1622732; contains Interpro entry IPR000379 (68416.m05177) 3331 Not regulated NC-NC-NC 252409_at At3g47650 bundle-sheath defective protein 2 family/bsd2 family similar to bundle sheath defective protein 2 [Zea mays] GI: 4732091 (68416.m05187) 3332 Not regulated NC-NC-NC 252383_at At3g47780 ABC transporter family protein transport protein ABC-C, Homo sapiens, PIR2: S71363 (68416.m05205) 3333 Not regulated NC-NC-NC 252385_at At3g47810 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase (68416.m05208) 3334 Not regulated NC-NC-NC 252387_at At3g47800 aldose 1-epimerase family protein similar to ALDOSE 1-EPIMERASE PRECURSOR GB: P05149 [SP|P05149] from [Acinetobacter calcoaceticus]; contains Pfam profile PF01263 Aldose 1-epimerase (68416.m05207) 3335 Not regulated NC-NC-NC 252389_at At3g47833 expressed protein (68416.m05213) 3336 Not regulated NC-NC-NC 252391_at At3g47860 apolipoprotein D-related contains weak similarity to Apolipoprotein D precursor (ApoD) (Swiss-Prot: P51910) [Mus musculus] (68416.m05217) 3337 Not regulated NC-NC-NC 252398_at At3g47990 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger. C3HC4 type (RING finger) (68416.m05232) 3338 Not regulated NC-NC-NC 252400_at At3g48020 expressed protein (68416.m05235) 3339 Not regulated NC-NC-NC 252402_s_at At3g48050 bromo-adjacent homology (BAH) domain-containing protein contains Pfam profile PF01426: BAH domain (68416.m05238) 3340 Not regulated NC-NC-NC 252371_at At3g48070 expressed protein (68416.m05241) 3341 Not regulated NC-NC-NC 252348_at At3g48140 senescence-associated protein, putative similar to B12D protein [Ipomoea batatas] GB: AAD22104 (68418.m05250) 3342 Not regulated NC-NC-NC 252349_at At3g48150 cell division cycle family protein/CDC family protein similar to cell division cycle protein 23 [Homo sapiens] GI: 3283051, anaphase- promoting complex subunit 8 [Homo sapiens] GI: 6180017; contains Pfam profile PF00515: TPR Domain (68416.m05251) 3343 Not regulated NC-NC-NC 252353_at At3g48200 expressed protein (68416.m05259) 3344 Not regulated NC-NC-NC 252354_at At3g48170 betaine-aldehyde dehydrogenase, putative similar to betaine-aldehyde dehydrogenase, chloroplast precursor (BADH) [Arabidopsis thaliana] SWISS-PROT: Q9S795 (68416.m05254) 3345 Not regulated NC-NC-NC 252362_at At3g48500 expressed protein (68416.m05294) 3346 Not regulated NC-NC-NC 252363_at At3g48460 GDSL-motif lipase/hydrolase family protein similar to lipase [Arabidopsis thaliana] GI: 1145627; contains InterPro Entry IPR001067 Lipolytic enzyme, G-D-S-L family (68416.m05290) 3347 Not regulated NC-NC-NC 252366_at At3g48420 haloacid dehalogenase-like hydrolase family protein low similarity to SP|P95649 CbbY protein {Rhodobacter sphaeroides}; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase (68416.m05285) 3348 Not regulated NC-NC-NC 252324_at At3g48565 3349 Not regulated NC-NC-NC 252328_at At3g48570 protein transport protein SEC61 gamma subunit, putative similar to Swiss-Prot: Q19967 protein transport protein SEC61 gamma subunit [Caenorhabditis elegans] (68418.m05303) 3350 Not regulated NC-NC-NC 252329_at At3g48760 zinc finger (DHHC type) family protein contains Pfam profile PF01529: DHHC zinc finger domain (68416.m05325) 3351 Not regulated NC-NC-NC 252335_at At3g48860 expressed protein (68416.m05336) 3352 Not regulated NC-NC-NC 252336_at At3g48880 F-box family protein N7 protein - Medicago truncatula, EMBL: CAA76808; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1: At5g67250 (68416.m05339) 3353 Not regulated NC-NC-NC 252337_at At3g48750 cell division control protein 2 homolg A (CDC2A) identical to cell division control protein 2 homolog A [Arabidopsis thaliana] SWISS-PROT: P24100 (68416.m05324) 3354 Not regulated NC-NC-NC 252338_at At3g48890 cytochrome b5 domain-containing protein similar to SP|O00264 Membrane associated progesterone receptor component (mPR) {Homo sapiens}; contains Pfam profile PF00173: Heme/Steroid binding domain (68416.m05341) 3355 Not regulated NC-NC-NC 252287_at At3g49080 ribosomal protein S9 family protein contains Pfam profile PF00380: ribosomal protein S9 (68416.m05362) 3356 Not regulated NC-NC-NC 252294_at At3g49010 60S ribosomal protein L13 (RPL13B)/breast basic conserved protein 1-related (BBC1) (68416.m05353) 3357 Not regulated NC-NC-NC 252295_at At3g49100 signal recognition particle 9 kDa protein, putative/SRP9, putative similar to SP|P49458 Signal recognition particle 9 kDa protein (SRP9) {Homo sapiens}: contains Pfam PF05486: Signal recognition particle 9 kDa protein (SRP9) (68416.m05363) 3358 Not regulated NC-NC-NC 252303_at At3g49210 expressed protein (68416.m05378) 3359 Not regulated NC-NC-NC 252308_at At3g49310 expressed protein contains PF05631: Protein of unknown function (DUF791) (68416.m05391) 3360 Not regulated NC-NC-NC 252280_at At3g49260 calmodulin-binding family protein low similarity to SF16 protein [Helianthus annuus] GI: 560150; contains Pfam profile PF00612: IQ calmodulin-binding motif (68416.m05383) 3361 Not regulated NC-NC-NC 252282_at At3g49360 glucosamine/galactosamine-6-phosphate isomerase family protein similar to SP|O95336 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) {Homo sapiens}; contains Pfam profile PF01182: Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase (68416.m05398) 3362 Not regulated NC-NC-NC 252264_at At3g49590 expressed protein (68416.m05419) 3363 Not regulated NC-NC-NC 252269_at At3g49580 expressed protein (68416.m05418) 3364 Not regulated NC-NC-NC 252270_at At3g49560 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein contains Pfam PF02466: Mitochondrial import inner membrane translocase subunit Tim17 (68416.m05416) 3365 Not regulated NC-NC-NC 252271_s_at At3g49420 Got1-like family protein contains Pfam profile: PF04178 Got1-like family (68416.m05402) 3366 Not regulated NC-NC-NC 252274_at At3g49680 branched-chain amino acid aminotransferase 3/branched-chain amino acid transaminase 3 (BCAT3) identical to SP|Q9M401 Branched-chain amino acid aminotransferase 3, chloroplast precursor (EC 2.6.1.42) (Atbcat-3){Arabidopsis thaliana} (68416.m05431) 3367 Not regulated NC-NC-NC 252276_at At3g49490 expressed protein (68416.m05409) 3368 Not regulated NC-NC-NC 252277_at At3g49470 nascent polypeptide-associated complex (NAC) domain-containing protein similar to alpha-NAC, non-muscle form [Mus musculus] GI: 1666690; contains Pfam profile PF01849: NAC domain (68416.m05407) 3369 Not regulated NC-NC-NC 252278_at At3g49530 no apical maristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC2 - Arabidopsis thaliana, EMBL: AF201456 (68416.m05413) 3370 Not regulated NC-NC-NC 252225_at At3g49870 ADP-ribosylation factor, putative similar to ADP-ribosylation factor-fike protein 1 (SP: P40616) [Homo sapiens]; ARF3 ADP- RIBOSYLATION FACTOR, GP: 453191 Arabidopsis thaliana; contains domain PF00025: ADP-ribosylation factor family (68416.m05452) 3371 Not regulated NC-NC-NC 252231_at At3g49720 expressed protein (68416: m05436) 3372 Not regulated NC-NC-NC 252189_at At3g50070 cyclin family protein similar to cyclin D3.1 protein [Nicotiana tabacum] GI: 4160300, CycD3.2 [Lycopersicon esculentum] GI: 6434199; contains Pfam profiles PF00134: Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal domain (68416.m05474) 3373 Not regulated NC-NC-NC 252192_at At3g50000 casein kinase II alpha chain 2 identical to casein kinase II, alpha chain 2 (CK II) [Arabidopsis thaliana] SWISS-PROT: Q08466 (68416.m05467) 3374 Not regulated NC-NC-NC 252213_at At3g50210 2-oxoacid-dependent oxidase, putative strong similarity to partial cds of 2-oxoacid-dependent oxidase (din11) from GI: 10834554 [Arabidopsis thaliana] (68416.m05490) 3375 Not regulated NC-NC-NC 252214_at At3g50260 AP2 domain-containing transcription factor, putative EREBP-3 homolog, Stylosanthes hamata, EMBL: U91982 (68416.m05496) 3378 Not regulated NC-NC-NC 252157_at At3g50430 expressed protein (68416.m05516) 3377 Not regulated NC-NC-NC 252158_at At3g50530 calcium-dependent protein kinase, putative/CDPK, putative similar to calcium/calmodulin-dependent protein kinase CaMK3 [Nicotiana tabacum] gi|16904226|gb|AAL30820 (68416.m05526) 3378 Not regulated NC-NC-NC 252166_at At3g50500 protein kinase, putative similar to abscisic acid-activated protein kinase [Vicia faba] gi|6739629|gb|AAF27340 (68416.m05523) 3379 Not regulated NC-NC-NC 252167_at At3g50560 short-chain dehydrogenase/reductase (SDR) family protein contains INTERPRO family IPR002198 short-chain dehydrogenase/reductase (SDR) superfamily (68416.m05530) 3380 Not regulated NC-NC-NC 252168_at At3g50440 hydrolase, alpha/beta fold family protein similar to ethylene-induced esterase [Citrus sinensis] GI: 14279437, polyneuridine aldehyde esterase [Rauvolfia serpentina] GI: 6651393; contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68416.m05517) 3381 Not regulated NC-NC-NC 252169_at At3g50520 phosphoglycerate/bisphosphoglycerate mutase family protein similar to SP|P00950 Phosphoglycerate mutase 1 (EC 5.4.2.1) {Saccharomyces cerevisiae}; contains Pfam profile PF00300: phosphoglycerate mutase family (68416.m05525) 3382 Not regulated NC-NC-NC 252174_at At3g50690 leucine-rich repeat family protein (68416.m05546) 3383 Not regulated NC-NC-NC 252178_at At3g50750 brassinosteroid signalling positive regulator-related contains similarity to BZR1 protein [Arabidopsis thaliana] gi|20270971|gb|AAM18490 (68416.m05554) 3384 Not regulated NC-NC-NC 252181_at At3g50685 expressed protein (68416.m05545) 3385 Not regulated NC-NC-NC 252184_at At3g50660 steroid 22-alpha-hydroxylase (CYP90B1) (DWF4) identical to gi: 2935342 (68416.m05541) 3386 Not regulated NC-NC-NC 252154_at At3g50880 HhH-GPD base excision DNA repair family protein contains weak similarity to DNA-3-methyladenine glycosylase 1 (EC 3.2.2.21) (3- methyladenine DNA glycosidase 1) (3MEA DNA glycosylase 1) (Swiss-Prot: Q92383) [Schizosaccharomyces pombe]; contains Pfam profile PF00730; HhH-GPD superfamily base excision DNA repair protein (68416.m05571) 3387 Not regulated NC-NC-NC 252130_at At3g50820 oxygen-evolving enhancer protein, chloroplast, putative/33 kDa subunit of oxygen evolving system of photosystem II, putative (PSBO2) identical to SP: Q9S841 Oxygen-evolving enhancer protein 1-2, chloroplast precursor (OEE1) [Arabidopsis thaliana]; strong similarity to SP|P23321 Oxygen-evolving enhancer protein 1-1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) {Arabidopsis thaliana} (68416.m05565) 3388 Not regulated NC-NC-NC 252132_at At3g50790 late embryogenesis abundant protein, putative/LEA protein, putative similar to Picea glauca late embryogenesis abundant protein (EMB8), PID: g1350545 SP|Q40883; contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68416.m05562) 3389 Not regulated NC-NC-NC 252133_at At3g50900 expressed protein (68416.m05573) 3390 Not regulated NC-NC-NC 252134_at At3g50910 expressed protein (68416.m05574) 3391 Not regulated NC-NC-NC 252135_at At3g50830 stress-responsive protein, putative similar to cold acclimation WCOR413-like protein gamma form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar to stress-regulated protein SAP1 [Xerophyta viscosa] gi|21380378|gb|AAM47505; identical to cDNA cold acclimation protein WCOR413-like protein beta form GI: 10121842 (68416.m05566) 3392 Not regulated NC-NC-NC 252136_at At3g50770 calmodulin-related protein, putative similar to regulator of gene silencing calmodulin-related protein GI: 12963415 from [Nicotiana tabacum] (68416.m05560) 3393 Not regulated NC-NC-NC 252139_at At3g51050 FG-GAP repeat-containing protein (68416.m05590) 3394 Not regulated NC-NC-NC 252141_at At3g51100 expressed protein (68416.m05595) 3395 Not regulated NC-NC-NC 252147_at At3g51270 RIO1 family protein contains Pfam profile PF01163: RIO1 family (68416.m05612) 3396 Not regulated NC-NC-NC 252150_at At3g51310 vacuolar protein sorting-associated protein 35 family protein/VPS35 family protein similar to vacuolar protein sorting 35 [Mus musculus] GI: 11875394; contains Pfam profile PF03635: Vacuolar protein sorting-associated protein 35 (68416.m05616) 3397 Not regulated NC-NC-NC 252121_at At3g51160 GDP-D-mannose-4,6-dehydratase (MUR1) almost identical to GDP-D-mannose-4,6-dehydratase (MUR1) GI: 1764100 from [Arabidopsis thaliana] (68416.m05602) 3398 Not regulated NC-NC-NC 252122_at At3g51140 expressed protein (68416.m05600) 3399 Not regulated NC-NC-NC 252124_at At3g51010 expressed protein (68416.m05585) 3400 Not regulated NC-NC-NC 252125_at At3g51040 expressed protein contains Pfam PF05608: Protein of unknown function (DUF778) (68416.m05588) 3401 Not regulated NC-NC-NC 252095_at At3g51000 epoxide hydrolase, putative similar to epoxide hydrolase [Glycine max] GI: 2764806; contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68416.m05584) 3402 Not regulated NC-NC-NC 252098_at At3g51330 aspartyl protease family protein contains Eukaryotic and viral aspartyl proteases active site, PROSITE: PS00141 (68416.m05619) 3403 Not regulated NC-NC-NC 252099_at At3g51250 senescence/dehydration-associated protein-related sunder to senescence-associated protein 12 [Hemerocallis hybrid cultivar] gi|3551958|gb|AAC34857; similar to early-responsive to dehydration stress ERD7 protein [Arabidopsis thaliana] gi|15320412|dbj|BAB63916 (68416.m05610) 3404 Not regulated NC-NC-NC 252104_at At3g51460 phosphoinositide phosphatase family protein contains similarity to phosphoinositide phosphatase SAC1 [Rattus norvegicus] gi|11095248|gb|AAG29810; contains Pfam domain, PF02383: Sacl homology domain; contains non-consensus AT-AC splice sites at intron 8 (68416.m05638) 3405 Not regulated NC-NC-NC 252113_at At3g51620 expressed protein (68416.m05658) 3406 Not regulated NC-NC-NC 252116_at At3g51510 expressed protein (68416.m05641) 3407 Not regulated NC-NC-NC 252091_at At3g51390 zinc finger (DHHC type) family protein contains Pfam profile PF01529: DHHC zinc finger domain (68416.m05629) 3408 Not regulated NC-NC-NC 252092_at At3g51420 strictosidine synthase family protein similar to hemomucin [Drosophila melanogaster][GI: 1280434], strictosidine synthase [Reuvolfia serpentina][SP|P15324]; contains strictosidine synthase domain PF03088 (68416.m05632) 3409 Not regulated NC-NC-NC 252093_at At3g51500 expressed protein predicted protein, Oryza sativa, EMBL: AP000367 (68416.m05640) 3410 Not regulated NC-NC-NC 252064_at At3g51520 diacylglycerol acyltransferase family contains Pfam PF03982: Diacylglycerol acyltransferase (68416.m05642) 3411 Not regulated NC-NC-NC 252065_at At3g51610 expressed protein (68416.m05656) 3412 Not regulated NC-NC-NC 252067_at At3g51370 protein phosphatase 2C, putative/PP2C, putative similar to Ser/Thr protein phosphatase 2C (PP2C6) (GI: 15020818) [Arabidopsis thaliana]; similar to protein phosphatase 2C (GI: 3608412) [Mesembryanthemum crystallinum]; contains Pfam PF00481: Protein phosphatase 2C domain (68416.m05626) 3413 Not regulated NC-NC-NC 252069_s_at At3g51640 expressed protein (68416.m05663) 3414 Not regulated NC-NC-NC 252076_at At3g51660 macrophage migration inhibitory factor family protein/MIF family protein contains Pfam profile: PF01187 Macrophage migration inhibitory factor family(MIF) (68416.m05665) 3415 Not regulated NC-NC-NC 252086_at At3g52030 F-box family protein/WD-40 repeat family protein (68416.m05707) 3416 Not regulated NC-NC-NC 252032_at At3g52150 RNA recognition motif (RRM)-containing protein similar to chloroplast RNA-binding protein cp33 [Arabidopsis thaliana] GI: 681912; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain (68416.m05724) 3417 Not regulated NC-NC-NC 252033_at At3g51950 zinc finger (CCCH-type) family protein/RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA- binding region RNP-1 (RNA recognition motif) (RRM), PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) (68416.m05698) 3418 Not regulated NC-NC-NC 252038_at At3g52120 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein/D111/G-patch domain-containing protein contains Pfam profiles PF01585: G-patch domain, PF01805: Surp module (68416.m05721) 3419 Not regulated NC-NC-NC 252041_at At3g52090 DNA-directed RNA polymerase II 13.6 kDa subunit (RPB13.6) identical to SP|Q38859 DNA-directed RNA polymerase II 13.6 kDa polypeptide (EC 2.7.6) {Arabidopsis thaliana} (68416.m05716) 3420 Not regulated NC-NC-NC 252044_at At3g52420 outer envelope membrane protein, putative similar to outer envelope membrane protein gi|703238|gb|AAA63414 (68416.m05765) 3421 Not regulated NC-NC-NC 252055_at At3g52580 40S ribosomal protein S14 (RPS14C) ribosomal protein S14 - Zea mays. PIR2: A30097 (68416.m05790) 3422 Not regulated NC-NC-NC 252059_at At3g52560 ubiquitin-conjugating enzyme family protein similar to DNA-binding protein CROC-1B [Homo sapiens] GI: 1066082; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme (68416.m05784) 3423 Not regulated NC-NC-NC 252001_at At3g52750 chloroplast division protein, putative strong similarity to plastid division protein FtsZ [Arabidopsis thaliana] GI: 14195704, chloroplast division protein AtFtsZ2-1 [Arabidopsis thaliana] GI: 15636809 (68416.m05812) 3424 Not regulated NC-NC-NC 252002_at At3g52760 integral membrane Yip1 family protein contains Pfam domain, PF04893: Yip1 domain (68416.m05813) 3425 Not regulated NC-NC-NC 252008_at At3g52610 expressed protein (68416.m05796) 3426 Not regulated NC-NC-NC 252012_at At3g52730 ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein contains Pfam profile: PF05365 ubiquinol-cytochrome C reductase, UQCRX/QCR9 like (68416.m05810) 3427 Not regulated NC-NC-NC 252026_at At3g53030 protein kinase family protein contains eukaryotic protein kinase domain. INTERPRO: IPR000719 (68416.m05845) 3428 Not regulated NC-NC-NC 251996_at At3g52840 beta-galactosidase, putative/lactase, putative similar to beta-galactosidase precursor GI: 3869280 from [Carica papaya] (68416.m05823) 3429 Not regulated NC-NC-NC 251997_at At3g53020 60S ribosomal protein L24 (RPL24B) 60S ribosomal protein L24, Arabidopsis thaliana, EMBL: AC006282 (68416.m05844) 3430 Not regulated NC-NC-NC 251969_at At3g53130 cytochrome P450 family protein similar to Cytochrome P450 97B2 (SP: 048921) [Glycine max] (68416.m05855) 3431 Not regulated NC-NC-NC 251973_at At3g53180 glutamine synthetase, putative similar to glutamine synthetase (glutamate-ammonia ligase) [Bacillus subtilis] SWISS- PROT: P12425 (68416.m05860) 3432 Not regulated NC-NC-NC 251975_at At3g53230 cell division cycle protein 48, putative/CDC48, putative very strong similarity to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana}; contains Pfam profiles PF00004: ATPase AAA family, PF02359: Cell division protein 48 (CDC48) N-terminal domain (68416.m05865) 3433 Not regulated NC-NC-NC 251962_at At3g53190 pectate lyase family protein similar to pectate lyase 2 GP: 6606534 from [Musa acuminate] (68416.m05861) 3434 Not regulated NC-NC-NC 251969_at At3g53110 DEAD/DEAH box helicase, putative RNA helicase, Mus musculus, PIR: I49731 (68416.m05853) 3435 Not regulated NC-NC-NC 251991_at At3g53340 CCAAT-box binding transcription factor, putative similar to CAAT-box DNA binding protein subunit B (NF-YB) (SP: P25209) (GI: 22380) [Zea mays]; contains Pfam PF00808: Histone-like transcription factor (CBF/NF-Y) and archaeal histone (68416.m05885) 3436 Not regulated NC-NC-NC 251938_at At3g53430 60S ribosomal protein L12 (RPL12B) 60S RIBOSOMAL PROTEIN L12, Prunus armeniaca, SWISSPROT: RL12_PRUAR (68416.m05896) 3437 Not regulated NC-NC-NC 251941_at At3g53470 expressed protein ribosomal protein S25, cytosolic, Arabidopsis thaliana, PIR: T08568 (68416.m05902) 3438 Not regulated NC-NC-NC 251945_at At3g53520 NAD-dependent epimerase/dehydratase family protein similar to UDP-glucuronic acid decarboxylase Uxs1p from Filobasidiella neoformans GI: 14318327; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family (68416.m05909) 3439 Not regulated NC-NC-NC 251946_at At3g53540 expressed protein (68416.m05912) 3440 Not regulated NC-NC-NC 251948_at At3g53580 diaminopimelate epimerase family protein contains Pfam profile PF01678: Diaminopimelate epimerase (68416.m05918) 3441 Not regulated NC-NC-NC 251951_s_at At3g53630 expressed protein predicted proteins, Arabidopsis thaliana (68416.m05924) 3442 Not regulated NC-NC-NC 251956_at At3g53460 29 kDa ribonucleoprotein, chloroplast/RNA-binding protein cp 29 nearly identical to SP/Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} (68416.m05900) 3443 Not regulated NC-NC-NC 251960_at At3g53610 Ras-related GTP-binding protein, putative similar to Ras-related protein ARA-3 SP: P28186 from [Arabidopsis thaliana] (68416.m05921) 3444 Not regulated NC-NC-NC 251962_at At3g53420 plasma membrane intrinsic protein 2A (PIP2A)/aquaporin PIP2.1 (PIP2.1) identical to plasma membrane intrinsic protein 2A SP: P43286 from [Arabidopsis thaliana] (68416.m05895) 3445 Not regulated NC-NC-NC 251905_at At3g53710 ARF GAP-like zinc finger-containing protein ZIGA2 (ZIGA2) nearly identical to ARF GAP-like zinc finger-containing protein ZIGA2 from GI: 10441356 [Arabidopsis thaliana]; contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP) (68416.m05933) 3446 Not regulated NC-NC-NC 251919_at At3g53800 armadillo/beta-catenin repeat family protein contains Pfam profile: PF00514 armadillo/beta-catenin-like repeat (68416.m05944) 3447 Not regulated NC-NC-NC 251920_at At3g53900 uracil phosphoribosyltransferase, putative/UMP pyrophosphorylase, putative/UPRTase, putative similar to SP|P50926 Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase) {Lactococcus lactis}; contains Pfam profile PF00156: Phosphoribosyl transferase domain (68416.m05954) 3448 Not regulated NC-NC-NC 251923_at At3g53880 aldo/keto reductase family protein similar to chalcone reductase [Sesbania rostrata][GI: 2792155], and aldose reductase ALDRXV4 [Xerophyta viscosa][GI: 4539944], [Hordeum vulgare][GI: 728592] (68416.m05952) 3449 Not regulated NC-NC-NC 251926_at At3g53740 60S ribosomal protein L36 (RPL36B) 60S RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe, swissprot: Q92365 (68416.m05936) 3450 Not regulated NC-NC-NC 251932_at At3g54010 peptidyl-prolyl cis-trans isomerase, putative/FK506-binding protein, putative/pasticcino 1-D (PAS1-D) nearly identical to pasticcino 1-D [Arabidopsis thaliana] GI: 3080740 (68416.m05971) 3451 Not regulated NC-NC-NC 251935_at At3g54090 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase (68416.m05980) 3452 Not regulated NC-NC-NC 251877_at At3g54300 synaptobrevin family protein similar to vesicle-associated membrane protein 7B (At VAMP7B). Arabidopsis thaliana, EMBL: AF025333 (68416.m06001) 3453 Not regulated NC-NC-NC 251879_at At3g54200 expressed protein hin1 protein, Nicotiana tabacum. PIR: T03265 (68416.m05991) 3454 Not regulated NC-NC-NC 251882_at At3g54140 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family (68416.m05985) 3455 Not regulated NC-NC-NC 251883_at At3g54210 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17 (68416.m05992) 3456 Not regulated NC-NC-NC 251884_at At3g54150 embryo-abundant protein-related similar to embryo-abundant protein [Picea glauca] GI: 1350531 (68416.m05986) 3457 Not regulated NC-NC-NC 251885_at At3g54050 fructose-1,6-bisphosphatase, putative/D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative/FBPase, putative strong similarity to fructose-1,6-bisphosphatase [Brassica napus] GI: 289367; identical to SP|P25851 Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) {Arabidopsis thaliana}; contains Pfam profile PF00316: fructose-1,6-bisphosphatase (68416.m05976) 3458 Not regulated NC-NC-NC 251888_at At3g54190 expressed protein GTP-binding regulatory protein beta chain, Dictyostelium discoideum, PIR: A47370 (68416.m05990) 3459 Not regulated NC-NC-NC 251893_at At3g54370 3460 Not regulated NC-NC-NC 251897_at At3g54360 expressed protein DNA-binding Mel-18 protein, Homo sapiens, PIR: JN0717 (68416.m06008) 3461 Not regulated NC-NC-NC 251867_at At3g54480 SKP1 interacting partner 5 (SKIP5) identical to GP: 14348816 SKP1-interacting partner 5 (Arabidopsis thaliana) (68416.m06027) 3462 Not regulated NC-NC-NC 251843_x_at At3g54590 proline-rich extensin-like family protein contains proline-rich extensin domains, INTERPRO: IPR002985 (68416.m06040) 3463 Not regulated NC-NC-NC 251845_at At3g54540 ABC transporter family protein similar to ABC50 GI: 10863747 from [Rattus norvegicus] (68416.m06035) 3464 Not regulated NC-NC-NC 251846_at At3g54560 histone H2A.F/Z identical to GI: 2407800 (68416.m06037) 3465 Not regulated NC-NC-NC 251852_at At3g54750 expressed protein (68416.m06057) 3466 Not regulated NC-NC-NC 251853_at At3g54790 armadillo/beta-catenin repeat family protein/U-box domain-containing protein contains Pfam domain, PF00514: Armadillo/beta- catenin-like repeats and Pfam, PF04564: U-box domain (68416.m06063) 3467 Not regulated NC-NC-NC 251864_at At3g54920 pectate lyase, putative/powdery mildew susceptibility protein (PMR6) identical to powdery mildew susceptibility protein [Arabidopsis thaliana] GI: 22506901; similar to pectate lyase 2 GP: 6606534 from [Musa acuminata] (68416.m06086) 3468 Not regulated NC-NC-NC 251811_at At3g54990 AP2 domain-containing transcription factor, putative similar to (SP: P47927) Floral homeotic protein APETALA2, Arabidopsis thaliana, U12546 (68416.m06102) 3469 Not regulated NC-NC-NC 251813_at At3g55000 tonneau family protein similar to tonneau 1b (GI: 11494367) [Arabidopsis thaliana] (68416.m06104) 3470 Not regulated NC-NC-NC 251814_at At3g54890 chlorophyll A-B binding protein/LHCI type I (CAB) identical to chlorophyll A/B-binding protein [Arabidopsis thaliana] GI: 16207; contains Pfam profile: PF00504 chlorophyll A-B binding protein (68416.m06081) 3471 Not regulated NC-NC-NC 251815_at At3g54900 CAX-interacting protein 1 (CAXIP1) identical to cDNA CAXIP1 protein (CAXIP1) GI: 27752304, CAXIP1 protein [Arabidopsis thaliana] GI: 27752305 (68416.m06084) 3472 Not regulated NC-NC-NC 251817_at At3g54840 Rab GTPase (ARA6) identical to small GTPase Ara6 [Arabidopsis thaliana] GI: 13160603 (68416.m06076) 3473 Not regulated NC-NC-NC 251819_at At3g55030 phosphatidylglycerolphosphate synthase, putative similar to phosphatidylglycerolphosphate synthase GI: 13365519 from [Arabidopsis thaliana]; contains non-consensus CG acceptor splice site at exon 4 (68416.m06111) 3474 Not regulated NC-NC-NC 251820_at At3g55040 In2-1 protein, putative similar to In2-1 protein, Zea mays, P49246 (68416.m06112) 3475 Not regulated NC-NC-NC 251821_at At3g55050 serine/threonine protein phosphatase 2C (PP2C6) identical to Ser/Thr protein phosphates 2C (PP2C6) (GI: 15020818) [Arabidopsis thaliana]; similar to protein phosphatase 2C (GI: 3608412) [Mesembryanthemum crystallinum]; contains Pfam PF00481: Protein phosphatase 2C domain; contains TIGRFAM TIGR01573: CRISPR-associated protein Cas2 (68416.m06113) 3476 Not regulated NC-NC-NC 251823_at At3g55080 SET domain-containing protein low similarity to ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N- methyltransferase I [Spinacia oleracea] GI: 3403236; contains Pfam profile PF00856: SET domain (68416.m06117) 3477 Not regulated NC-NC-NC 251827_at At3g55120 chalcone-flavanone isomerase/chalcone isomerase (CHI) identical to SP|P41088 (68416.m06121) 3478 Not regulated NC-NC-NC 251831_at At3g55140 pectate lyase family protein similar to pollen allergen Amb a 1.3 SP: P27761 from [Ambrosia arternisiifolia] (68416.m06123) 3479 Not regulated NC-NC-NC 251832_at At3g55150 exocyst subunit EXO70 family protein contains Pfam domain PF03081: Exo70 exocyst complex subunit; tomato leucine zipper- containing protein, Lycopersicon esculentum, PIR: S21495 (68416.m06125) 3480 Not regulated NC-NC-NC 251834_at At3g55170 60S ribosomal protein L35 (RPL35C) various ribosomal L35 proteins (68416.m06127) 3481 Not regulated NC-NC-NC 251810_at At3g55250 expressed protein predicted pectate-lyase, Arabidopsis thaliana, PIR: T06728 (68416.m06136) 3482 Not regulated NC-NC-NC 251783_at At3g55280 60S ribosomal protein L23A (RPL23aB) various ribosomal L23a proteins (68416.m06139) 3483 Not regulated NC-NC-NC 251784_at At3g55330 photosystem II reaction center PsbP family protein contains Pfam profile PF01789: PsbP (68416.m06145) 3484 Not regulated NC-NC-NC 251785_at At3g55130 ABC transporter family protein breast cancer resistance protein 1 BCRP1, Mus musculus, EMBL: NP_036050 (68416.m06122) 3485 Not regulated NC-NC-NC 251788_at At3g55420 expressed protein (68416.m06155) 3486 Not regulated NC-NC-NC 251789_at At3g55450 protein kinase, putative similar to protein kinase APK1B [Arabidopsis thaliana] SWISS-PROT: P46573 (68416.m06158) 3487 Not regulated NC-NC-NC 251790_at At3g55470 C2 domain-containing protein similar to phloem protein GI: 4164539 from [Cucurbita maxima] (68416.m06160) 3488 Not regulated NC-NC-NC 251796_at At3g55360 3-oxo-5-alpha-steroid 4-dehydrogenase family protein/steroid 5-alpha-reductase family protein similar to synaptic glycoprotein SC2 spliced variant from Homo sapiens [EMBL: AF038958], SC2 from Rattus sp. [gi: 256994]; contains Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544 (68416.m06148) 3489 Not regulated NC-NC-NC 251797_at At3g55560 DNA-binding protein-related contains Pfam domain PF03479: Domain of unknown function (DUF296), found in AT-hook motifs Pfam: PF02178 (68416.m06169) 3490 Not regulated NC-NC-NC 251798_at At3g55460 SC35-like splicing factor, 30 kD (SCL30) nearly identical to SC35-like splicing factor SCL30, 30 kD [Arabidopsis thaliana] GI: 9843657; Serine/arginine-rich protein/putative splicing factor, Arabidopdis thaliana, EMBL: AF099940; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (68416.m06159) 3491 Not regulated NC-NC-NC 251801_at At3g55440 triosephosphate isomerase, cytosolic, putative strong similarity to triosephosphate isomerase, cytosolic from Petunia hybrida [SP|P48495], from Coptis japonica [SP|P21820] (68416.m06157) 3492 Not regulated NC-NC-NC 251802_at At3g55380 ubiquitin-conjugating enzyme 14 (UBC14) E2; UbcAT3; identical to gi: 2129757, S46656 (68416.m06151) 3493 Not regulated NC-NC-NC 251804_at At3g55430 glycosyl hydrolase family 17 protein/beta-1,3-glucanase, putative similar to beta-1,3 glucanase GI: 7414433 from [Pisum sativum]; contains Pfam profile PF00332: Glycosyl hydrolases family 17 (68416.m06156) 3494 Not regulated NC-NC-NC 251805_at At3g55530 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68416.m06166) 3495 Not regulated NC-NC-NC 251807_at At3g55400 methionyl tRNA synthetase/methionine-tRNA ligase/MetRS (cpMetRS) identical to methionyl-tRNA synthetase MEtRS [Arabidopsis thaliana] GI: 2266985 (68416.m06153) 3496 Not regulated NC-NC-NC 251809_at At3g55600 expressed protein predicted proteins, Arabidopsis thaliana (68416.m06175) 3497 Not regulated NC-NC-NC 251775_s_at At3g55610 delta 1-pyrroline-5-carboxylate synthetase B/P5CS B (P5CS2) identical to SP|P54888 (68416.m06177) 3498 Not regulated NC-NC-NC 251776_at At3g55620 eukaryotic translation initiation factor 6, putative/eIF-8, putative similar to SP|O55135 Eukaryotic translation initiation factor 6 (eIF- 6) (B4 integrin interactor) (Mus musculus); contains Pfam profile PF01912: eIF-6 family (68416.m06178) 3499 Not regulated NC-NC-NC 251758_at At3g55770 LIM domain-containing protein similar to pollen specific LIM domain protein 1b [Nicotiana tabacum] GI: 6467905, PGPS/D1 [Petunia x hybrida] GI: 4105772; contains Pfam profile PF00412: LIM domain (68416.m06197) 3500 Not regulated NC-NC-NC 251759_at At3g55630 dihydrofolate synthetase/folylpolyglutamate synthetase (DHFS/FPGS4) nearly identical to folylpolyglutamate-dihydrofolate synthetase [Arabidopsis thaliana] GI: 17976761 (68416.m06179) 3501 Not regulated NC-NC-NC 251762_at At3g55800 sedoheptulose-1,7-bisphosphatase, chloroplast/sedoheptulose-bisphosphatase identical to SP|P46283 Sedoheptulose-1,7- bisphosphatase, chloroplast precursor (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPASE) (SED(1,7)P2ASE) {Arabidopsis thaliana} (68416.m06200) 3502 Not regulated NC-NC-NC 251763_at At3g55730 myb family transcription factor (MYB109) contains Pfam profile: PF00249 myb-like DNA-binding domain (68416.m06191) 3503 Not regulated NC-NC-NC 251764_at At3g55830 glycosyltransferase family protein 47 similar to exostose-related protein 2, Homo sapiens, PIR: JC5935 [SP|Q93063], EXTL2, Mus musculus [GI: 10443633] (68416.m06203) 3504 Not regulated NC-NC-NC 251773_at At3g55960 NLI interacting factor (NIF) family protein contains Pfam profile PF03031: NLI interacting factor (68416.m06218) 3505 Not regulated NC-NC-NC 251740_at At3g56070 peptidyl-prolyl cis-trans isomerase, putative/cyclophilin, putative/rotamase, putative similar to peptidyl-prolyl cis-trans isomerase, PPlase (cyclophilin, cyclosporin A-binding protein) [Catharanthus roseus] SWISS-PROT: Q39613 (68416.m06231) 3506 Not regulated NC-NC-NC 251744_at At3g56010 expressed protein (68416.m06223) 3507 Not regulated NC-NC-NC 251719_at At3g56140 expressed protein At2g40400 - Arabidopsis thaliana, EMBL: AC007020 (68416.m06240) 3508 Not regulated NC-NC-NC 251721_s_at At3g56190 alpha-soluble NSF attachment protein 2/alpha-SNAP2/ASNAP2 identical to alpha-soluble NSF attachment protein 2/alpha- SNAP2 SP: Q9SPE6 from [Arabidopsis thaliana] (68416.m06245) 3509 Not regulated NC-NC-NC 251722_at At3g56200 amino acid transporter family protein low similarity to N system amino acids transporter NAT-1 [Mus musculus] GI: 7406950; belongs to INTERPRO: IPR002422 amino acid/polyamine transporter, family II (68416.m06246) 3510 Not regulated NC-NC-NC 251729_at At3g56310 alpha-galactosidase, putative/melibiase, putative/alpha-D-galactoside galactohydrolase, putative similar to alpha-galactosidase SP: Q42656 from [Coffea arabica] (68416.m06259) 3511 Not regulated NC-NC-NC 251732_at At3g56110 prenylated rab acceptor (PRA1) family protein weak similarity to prenylated Rab acceptor 1 (PRA1) [Homo sapiens] GI: 4877285; contains Pfam profile PF03206: Prenylated rab acceptor (PRA1) (68416.m06236) 3512 Not regulated NC-NC-NC 251735_at At3g56090 ferritin, putative similar to ferritin subunit cowpea2 precursor [Vigna unguiculata] GI: 2970654; contains Pfam profile PF00210: Ferritin-like domain (68416.m06234) 3513 Not regulated NC-NC-NC 251736_at At3g56130 biotin/lipoyl attachment domain-containing protein low similarity to SP|Q06881 Biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP) {Anabaena sp.}; contains Pfam profile PF00364: Biotin-requiring enzyme (68416.m06238) 3514 Not regulated NC-NC-NC 251737_at At3g56340 40S ribosomal protein S26 (RPS26C) several 40S ribosomal protein S26 (68416.m06264) 3515 Not regulated NC-NC-NC 251739_at At3g56170 Ca(2+)-dependent nuclease identical to Ca(2+)-dependent nuclease [Arabidopsis thaliana] GI: 7684292; supporting cDNA gi|7684291|dbj|D84226.1|(68416.m06243) 3516 Not regulated NC-NC-NC 251687_at At3g56460 oxidoreductase, zinc-binding dehydrogenase family protein low similarity to probable NADP-dependent oxidoreductase (zeta- crystallin homolog) P1 [SP|Q39172][gi: 886428] and P2 [SP|Q39173][gi: 886430], zeta-crystallin/quinone reductase (NADPH) - Mus musculus, PIR: A54932: contains Pfam profile PF00107: oxidoreductase, zinc-binding dehydrogenase family (68416.m06279) 3517 Not regulated NC-NC-NC 251695_at At3g56585 3518 Not regulated NC-NC-NC 251701_at At3g56650 thylakoid lumenal 20 kDa protein SP: Q9LXX5; PMID: 11719511; F22K20.16 - Arabidopsis thaliana, EMBL: AC002291; (68416.m06299) 3519 Not regulated NC-NC-NC 251707_at At3g56490 zinc-binding protein, putative/protein kinase C inhibitor, putative similar to 14 kDa zinc-binding protein (Protein kinase C inhibitor, PKCI) [Zea mays] Swiss-Prot: P42856 (68416.m06282) 3520 Not regulated NC-NC-NC 251679_at At3g57030 stritosidine synthase family protein similar to strictosidine synthase [Rauvolfia serpentina][SP|P15324] (68416.m06348) 3521 Not regulated NC-NC-NC 251657_at At3g57000 nucleolar essential protein-related contains weak similarity to Nucleolar essential protein 1 (Essential for mitotic growth 1) (Swiss- Prot: Q06287) [Saccharomyces cerevisiae] (68416.m06345) 3522 Not regulated NC-NC-NC 251659_at At3g57090 expressed protein (68416.m06356) 3523 Not regulated NC-NC-NC 251661_at At3g56950 small basic membrane integral family protein contains similarity to small basic membrane integral protein ZmSIP2-1 (GI: 13447817) [Zea mays] (68416.m06336) 3524 Not regulated NC-NC-NC 251662_at At3g57080 eukaryotic rpb5 RNA polymerase subunit family protein similar to SP|P19388 DNA-directed RNA polymerase II 23 kDa polypeptide (EC 2.7.7.6) {Homo sapiens}; contains Pfam profiles PF03871: RNA polymerase Rpb5 N-terminal domain, PF01191: RNA polymerase Rpb5 C-terminal domain (68416.m06355) 3525 Not regulated NC-NC-NC 251663_at At3g57070 glutaredoxin family protein contains Pfam profile PF00462: Glutaredoxin (68416.m06354) 3526 Not regulated NC-NC-NC 251664_at At3g56940 dicarboxylate diiron protein, putative (Crd1) similar to leucine-containing zipper protein At103 GP: 6911864; contains Pfam profile PF05447: Copper response defect 1 (CRD1) (68416.m06334) 3527 Not regulated NC-NC-NC 251666_at At3g57050 cystathionine beta-lyase, chloroplast/beta-cystathionase/cysteine lyase (CBL) identical to SP|P53780 Cystathionine beta-lyase, chloroplast precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase) {Arabidopsis thaliana} (68416.m06350) 3528 Not regulated NC-NC-NC 251672_at At3g57230 MADS-box protein (AGL16) MADS-box transcription factor DEFH125 - Antirrhinum majus, PIR: T17029; contains Pfam domain PF00319: SRF-type transcription factor (DNA-binding and dimerisation domain); contains Pfam domain PF01486: K-box region (68416.m06371) 3529 Not regulated NC-NC-NC 251649_at At3g57330 calcium-transporting ATPase, plasma membrane-type, putative/Ca2+-ATPase, putative (ACA11) identical to SP|Q9M2L4|ACAB_ARATH Potential calcium-transporting ATPase 11, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 11) {Arabidopsis thaliana}; strong similarity to calmodulin-stimulated calcium-ATPase [Brassica oleracea] GI: 1805654 (68416.m06381) 3530 Not regulated NC-NC-NC 251622_at At3g57340 DNAJ heat shock N-terminal domain-containing protein similar to SP|Q9QYI4 DnaJ homolog subfamily B member 12 Mus musculus; contains Pfam profile PF00226 DnaJ domain (68416.m06382) 3531 Not regulated NC-NC-NC 251624_at At3g57280 expressed protein contains Pfam profile PF03647: Uncharacterised protein family (UPF0136) (68416.m06376) 3532 Not regulated NC-NC-NC 251628_at At3g57290 eukaryotic translation initiation factor 3E/eIF3e (TIF3E1) identical to eukaryotic initiation factor 3E subunit [Arabidopsis thaliana] gi|12407658|gb|AAG53613 (68416.m06377) 3533 Not regulated NC-NC-NC 251630_at At3g57420 expressed protein contains Pfam domain PF03385: Protein of unknown function, DUF288 (68416.m06393) 3534 Not regulated NC-NC-NC 251639_at At3g57560 aspartate/glutamate/uridylate kinase family protein similar to acetylglutamate kinase from Porphyra purpurea [SP|P31595]. Campylobacter jejuni [GI: 6650364] contains Pfam profile PF00696: Amino acid kinase family (68416.m06409) 3535 Not regulated NC-NC-NC 251640_at At3g57450 expressed protein (68416.m06396) 3536 Not regulated NC-NC-NC 251643_at At3g57550 guanylate kinase 2 (GK-2) identical to guanylate kinase (GK-2) [Arabidopsis thaliana] gi|7861798|gb|AAF70409 (68416.m06408) 3537 Not regulated NC-NC-NC 251645_at At3g57790 glycoside hydrolase family 28 protein/polygalacturonase (pectinase) family protein weak similarity to SP|P15922 Exo-poly-alpha-D- galacturonosidase precursor (EC 3.2.1.82) (Exo-PG) (Erwinia chrysanthemi); contains PF00295: Glycosyl hydrolases family 28 (68416.m06438) 3538 Not regulated NC-NC-NC 251596_at At3g57650 acyl-CoA:1-acylglycerol-3-phosphate acyltransferase, putative similar to acyl-CoA:1-acylglycerol-3-phosphate acyltransferase GI: 4583544 from [Brassica napus] (68416.m06423) 3539 Not regulated NC-NC-NC 251602_at At3g57785 expressed protein (68416.m06437) 3540 Not regulated NC-NC-NC 251619_at At3g58050 expressed protein (68416.m06471) 3541 Not regulated NC-NC-NC 251558_at At3g57810 OTU-like cysteine protease family protein contains Pfam profile PF02338: OUT-like cysteine protease (68416.306444) 3542 Not regulated NC-NC-NC 251559_at At3g58010 expressed protein (68416.m06465) 3543 Not regulated NC-NC-NC 251573_at At3g58140 phenylalanyl-tRNA synthetase class IIc family protein similar to phenylalanine-tRNA synthetase [Homo sapiens] GI: 3983103; contains Pfam profile PF01409: tRNA synthetases class II core domain (F) (68416.m06483) 3544 Not regulated NC-NC-NC 251578_at At3g58180 PBS lyase HEAT-like repeat-containing protein contains Pfam profile: PF03130: PBS lyase HEAT-like repeat; contains alternative donor splice site TT at exon 2, hypothetical protein C14A4.1 - Caenorhabditis elegans, PIR: T19243 (68416.m06487) 3545 Not regulated NC-NC-NC 251579_at At3g58170 Bet1-like SNARE 1-1/Bet1/Sft1-like SNARE 14a/BS14a (BET11) identical to SP|Q9M2J9 Bet1-like SNARE 1-1 (AtBET11) (Bet1/Sft1-like SNARE 14a) (AtBS14a) [Mouse-ear cress] {Arabidopsis thaliana}; supporting cDNA gi|14030602|gb|AF368175.1|AF368175 (68416.m06486) 3546 Not regulated NC-NC-NC 251582_at At3g58580 endonuclease/exonuclease/phosphatase family protein similar to SP|P31384 Glucose-repressible alcohol dehydrogenase transcriptional effector (Carbon catabolite repressor protein 4) {Saccharomyces cerevisiae}; contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase family (68416.m06529) 3547 Not regulated NC-NC-NC 251528_at At3g58800 expressed protein hypothetical protein F21M11.17 - Arabidopsis thaliana, EMBL: AC003027 (68416.m06531) 3548 Not regulated NC-NC-NC 251532_at At3g58530 F-box family protein-related contains weak similarity to F-box protein FBL2 (GI: 6010699) [Rattus norvegicus] (68416.m06524) 3549 Not regulated NC-NC-NC 251533_at At3g58460 rhomboid family protein/ubiquitin-associated (UBA)/TS-N domain-containing protein contains Pfam profiles PF01694: Rhomboid family, PF00627: UBA/TS-N domain (68416.m06516) 3550 Not regulated NC-NC-NC 251536_at At3g58610 ketol-acid reductoisomerase identical to ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (Swiss-Prot: Q05758) [Arabidopsis thaliana] (68416.m06532) 3551 Not regulated NC-NC-NC 251541_at At3g58750 citrate synthase, glyoxysomal, putative strong similarity to SP|P49299 Citrate synthase, glyoxysomal precursor {Cucurbita maxima}; contains Pfam profile PF00285: Citrate synthase (68416.m06548) 3552 Not regulated NC-NC-NC 251546_at At3g58830 haloacid dehalogenase (HAD) superfamily protein contains TIGRfam TIGR01668: HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 and TIGR01662: hydrolase, HAD-superfamily, subfamily IIIA (68416.m06557) 3553 Not regulated NC-NC-NC 251551_at At3g58880 ethylene-responsive transcriptional coactivator, putative similar to ethylene-responsive transcriptional coactivator [Lycopersicon esculentum] gi|5669634|gb|AAD46402 (68416.m06540) 3554 Not regulated NC-NC-NC 251553_at At3g58710 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA-binding domain (68416.m06543) 3555 Not regulated NC-NC-NC 251505_at At3g59050 amine oxidase family protein similar to polyamine oxidase (EC 1.5.3.11) precursor - Zea mays [SP|O64411]; contains Pfam profile PF01593 amine oxidase, flavin-containing (68416.m06582) 3556 Not regulated NC-NC-NC 251508_at At3g58970 magnesium transporter CorA-like family protein contains Pfam profile PF01544: CorA-like Mg2+ transporter protein (68416.m06572) 3557 Not regulated NC-NC-NC 251519_at At3g59400 expressed protein (68416.m06625) 3558 Not regulated NC-NC-NC 251520_at At3g59410 protein kinase family protein low similarity to GCN2 eIF2alpha kinase [Mus musculus] GI: 6066585; contains Pfam profiles PF03129: Anticodon binding domain, PF00069: Protein kinase domain (68416.m06626) 3559 Not regulated NC-NC-NC 251492_at At3g59280 signaling molecule-related contains similarity to mitochondria-associated granulocyte macrophage CSF signaling molecule, mitochondrial precursor (CGI-136) [Mus musculus] SWISS-PROT: Q9CQV1 (68416.m06608) 3560 Not regulated NC-NC-NC 251493_at At3g59300 expressed protein hypothetical protein T2J13.20 - Arabidopsis thaliana, PIR: T46116 (68416.m06610) 3561 Not regulated NC-NC-NC 251494_at At3g59350 serine/threonine protein kinase, putative similar to Pto kinase interactor 1 (Pti1)[Lycopersicon esculentum] gi|3688069|gb|AAC61805 (68416.m08617) 3562 Not regulated NC-NC-NC 251464_at At3g59380 farnesyltransferase alpha subunit, putative/FTA, putative/protein farnesyltransferase, putative similar to farnesyltransferase alpha subunit [GI: 2246442][Pisum sativum] (68416.m06622) 3563 Not regulated NC-NC-NC 251465_at At3g59360 nucleotide-sugar transporter family protein low similarity to SP|P78382 CMP-sialic acid transporter {Homo sapiens}; contains Pfam profile PF04142: Nucleotide-sugar transporter (68416.m06619) 3564 Not regulated NC-NC-NC 251475_at At3g59660 C2 domain-containing protein/GRAM domain-containing protein low similarity to GLUT4 vesicle protein [Rattus norvegicus] GI: 4193489; contains Pfam profiles PF00168: C2 domain, PF02893: GRAM domain (68416.m06656) 3565 Not regulated NC-NC-NC 251484_at At3g59840 glycine-rich protein (68416.m06654) 3566 Not regulated NC-NC-NC 251460_at At3g59770 sacl homology domain-containing protein/WW domain-containing protein contains Pfam profiles PF00397: WW domain. PF02383: Sacl homology domain; identical to cDNA SAC domain protein 9 (SAC9) GI: 31415734 (68416.m06670) 3567 Not regulated NC-NC-NC 251439_at At3g59950 autophagy 4b (APG4b) identical to autophagy 4b [Arabidopsis thaliana] gi|19912145|dbj|BAB88384 (68416.m06690) 3568 Not regulated NC-NC-NC 251442_at At3g59980 tRNA-binding region domain-containing protein similar to SP|O54873 Multisynthetase complex auxiliary component p43 [Contains; Endothelial-monocyte activating polypeptide II (EMAP-II) (Small inducible cytokine subfamily E member 1)] {Cricetulus griseus}; contains Pfam profile PF01588: Putative tRNA binding domain (68416.m06696) 3569 Not regulated NC-NC-NC 251444_at At3g59990 methionyl aminopeptidase, putative/methionine aminopeptidase, putative/peptidase M, putative similar to Methionine aminopeptidase 2 (EC 3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo sapiens} SP|P50579; contains Pfam profile PF00557: metallopeptidase family M24; supporting cDNA gi|11344921|gb|AF300880.1|AF300880 (68416.m06697) 3570 Not regulated NC-NC-NC 251446_at At3g59840 expressed protein (68416.m06677) 3571 Not regulated NC-NC-NC 251447_at At3g59810 small nuclear ribonucleoprotein F, putative/U6 snRNA-associated Sm-like protein, putative/Sm protein F, putative similar to SWISS-PROT: Q9Y4Y8 U6 snRNA-associated Sm-like protein LSm6 [Mus musculus] (68416.m06674) 3572 Not regulated NC-NC-NC 251453_at At3g60070 lactose permease-related contains weak similarity to Lactose permease (Lactose-proton symport) (Lactose transport protein). (Swiss-Prot: O33814) [Staphylococcus xylosus] (68416.m06708) 3573 Not regulated NC-NC-NC 251454_at At3g60080 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68416.m06709) 3574 Not regulated NC-NC-NC 251425_at At3g60210 chloroplast chaperonin 10, putative similar to chloroplast chaperonin 10 GI: 14041813 from [Arabidopsis thaliana] (68416.m06728) 3575 Not regulated NC-NC-NC 251426_at At3g60180 uridylate kinase, putative/uridine monophosphate kinase, putative/UMP kinase, putative similar to uridylate kinase (EC 2.7.4.—) (UK) (Uridine monophosphate kinase) (UMP kinase) (UMP/CMP kinase) (Swiss-Prot: O04905) [Arabidopsis thaliana] (68416.m06720) 3576 Not regulated NC-NC-NC 251427_at At3g60130 glycosyl hydrolase family 1 protein/beta-glucosidase, putative (YLS1) contains Pfam PF00232: Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to amygdalin hydrolase isoform AH I precursor (GI: 16757966) [Prunus serotina]; identical to cDNA YLS1 mRNA for beta-glucosidase, partial cds GI: 13122279 (68416.m06714) 3577 Not regulated NC-NC-NC 251429_at At3g60190 dynamin-like protein E (DL1E) nearly identical to dynamin-like protein E [Arabidopsis thaliana] GI: 19423872; contains Pfam profiles PF01031: Dynamin central region, PF00350: Dynamin family, PF02212: Dynamin GTPase effector domain (68416.m06724) 3578 Not regulated NC-NC-NC 251402_at At3g60290 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to flavonol synthase 1 [SP|Q96330], gibberellin 20-oxidase [GI: 9791186]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain (68416.m06739) 3579 Not regulated NC-NC-NC 251403_at At3g60300 RWD domain-containing protein contains weak similarity to RING finger protein 25 (RING finger protein AO7) (Swiss-Prot: Q9QZR0) [Mus musculus] (68416.m06740) 3580 Not regulated NC-NC-NC 251408_at At3g60340 palmitoyl protein thioesterase family protein palmitoyl-protein thioesterase precursor, Mus musculus, EMBL: AF071025 (68416.m06745) 3581 Not regulated NC-NC-NC 251409_at At3g60245 60S ribosomal protein L37a (RPL37aC) (68416.m06733) 3582 Not regulated NC-NC-NC 251411_at At3g60250 casein kinase II beta chain, putative (CKB3) similar to casein kinase II beta-3 chain (CK II) [Arabidopsis thaliana SWISS- PROT: O81275 (68416.m06734) 3583 Not regulated NC-NC-NC 251422_at At3g60540 sec61beta family protein similar to SP|P52870 Protein transport protein SEC61 beta 1 subunit {Saccharomyces cerevisiae}; contains Pfam profile PF03911: Sec61beta family (68416.m06771) 3584 Not regulated NC-NC-NC 251400_at At3g60420 expressed protein (68416.m06758) 3585 Not regulated NC-NC-NC 251369_at At3g60480 expressed protein (68416.m06764) 3586 Not regulated NC-NC-NC 251376_at At3g60630 scarecrow transcription factor family protein scarecrow-like 6, Arabidopsis thaliana, EMBL: AF036303 (68416.m06784) 3587 Not regulated NC-NC-NC 251386_at At3g60800 zinc finger (DHHC type) family protein contains DHHC zinc finger domain PF01529 (68416.m06801) 3588 Not regulated NC-NC-NC 251391_at At3g60910 expressed protein low similarity to PIR|I46078 endothelin converting enzyme from Bos primigenius taurua (68416.m06814) 3589 Not regulated NC-NC-NC 251393_at At3g60640 autophagy 8g (APG8g) identical to autophagy 8g [Arabidopsis thaliana] GI: 19912163; contains Pfam profile PF02991: Microtubule associated protein 1A/1B, light chain 3; supporting cDNA gi|19912162|dbj|AB073181.1| (68416.m06785) 3590 Not regulated NC-NC-NC 251337_at At3g60820 20S proteasome beta subunit F1 (PBF1) (68416.m06804) 3591 Not regulated NC-NC-NC 251340_at At3g60830 actin-related protein 7 (ARP7) identical to actin-related protein 7 (ARP7) [Arabidopsis thaliana] GI: 21427469; contains Pfam profile PF00022: Actin (68416.m06805) 3592 Not regulated NC-NC-NC 251341_at At3g60770 40S ribosomal protein S13 (RPS13A) AtRPS13A mRNA for cytoplasmic ribosomal protein S13, Arabidopsis thaliana AB031739 (68416.m06798) 3593 Not regulated NC-NC-NC 251342_at At3g60690 auxin-responsive family protein similar to auxin-induced protein SAUR-AC1 (GP: 546362) (PIR: T06084)[Arabidopsis thaliana] PIR: T06084 (68416.m06790) 3594 Not regulated NC-NC-NC 251346_at At3g60980 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat (68416.m06824) 3595 Not regulated NC-NC-NC 251352_at At3g61070 peroxisomal biogenesis factor 11 family protein/PEX11 family protein contains Pfam PF05648: Peroxisomal biogenesis factor 11 (PEX11) (68416.m06835) 3596 Not regulated NC-NC-NC 251353_at At3g61080 fructosamine kinase family protein contains Pfam PF03881: Fructosamine kinase (68416.m06836) 3597 Not regulated NC-NC-NC 251355_at At3g61100 expressed protein contains Pfam profile PF04396: Protein of unknown function, DUF537 (68416.m06838) 3598 Not regulated NC-NC-NC 251334_at At3g61390 U-box domain-containing protein several hypothetical proteins - Arabidopsis thaliana (68416.m06871) 3599 Not regulated NC-NC-NC 251307_at At3g61200 thioesterase family protein contains Pfam profile PF03061: thioesterase family protein (68416.m06849) 3600 Not regulated NC-NC-NC 251309_at At3g61220 short-chain dehydrogenase/reductase (SDR) family protein similar to carbonyl reductase GI: 1049108 from [Mus musculus] (68416.m06851) 3601 Not regulated NC-NC-NC 251314_at At3g61180 zinc finger (C3HC4-type RING finger) family protein low similarity to RNF6 protein [Mus musculus] GI: 20530241; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) (68416.m06847) 3602 Not regulated NC-NC-NC 251321_at At3g61460 zinc finger (C3HC4-type RING finger) family protein (BRH1) identical to BRH1 RING finger protein [Arabidopsis thaliana] GI: 4689366; identical to cDNA BRH1 RING finger protein, GI: 4689365 (68416.m06883) 3603 Not regulated NC-NC-NC 251323_at At3g61580 delta-8 sphingolipid desaturase (SLD1) identical to delta-8 sphingolipid desaturase GI: 3819710 from [Arabidopsis thaliana]; contains Pfam profile PF00487: Fatty acid desaturase; contains Pfam profile PF00173: Heme/Steroid binding domain (68416.m06897) 3604 Not regulated NC-NC-NC 251324_at At3g61430 plasma membrane intrinsic protein 1A (PIP1A)/aquaporin PIP1.1 (PIP1.1) (AQ1) identical to plasma membrane intrinsic protein 1A SP: P43285 from [Arabidopsis thaliana] (68416.m06880) 3605 Not regulated NC-NC-NC 251325_s_at At3g61470 chlorophyll A-B binding protein (LHCA2) identical to Lhca2 protein [Arabidopsis thaliana] GI: 4741940; similar to chlorophyll A-B binding protein, chloroplast [Precursor] SP: P13869 from [Petunia hybrida]; contains Pfam profile: PF00504 chlorophyll A-B binding protein (68416.m06884) 3606 Not regulated NC-NC-NC 251330_at At3g61550 zinc finger (C3HC4-type RING finger) family protein similar to RING-H2 zinc finger protein ATL6 [Arabidopsis thaliana] GI: 4928403; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) (68416.m06894) 3607 Not regulated NC-NC-NC 251285_at At3g61770 expressed protein contains Pfam domain, PF02681: Uncharacterized BCR, COG1963 (68416.m06929) 3608 Not regulated NC-NC-NC 251288_at At3g61620 exonuclease RRP41 (RRP41) identical to exonuclease RRP41 [Arabidopsis thaliana] GI: 6164938 (68416.m06906) 3609 Not regulated NC-NC-NC 251300_at At3g61980 serine protease inhibitor, Kazal-type family protein contains Pfam domain PF00050: Kazal-type serine protease inhibitor domain (68416.m06961) 3610 Not regulated NC-NC-NC 251305_at At3g62030 peptidyl-prolyl cis-trans isomerase, chloroplast/cyclophilin/rotamase/cyclosporin A-binding protein (ROC4) identical to peptidyl- prolyl cis-trans isomerase, chloroplast precursor, PPlase (cyclophilin, cyclosporin A-binding protein) [Arabidopsis thaliana] SWISS- PROT: P34791; identical to cDNA nuclear-encoded chloroplast stromal cyclophilin (ROC4) GI: 405130 (68416.m06967) 3611 Not regulated NC-NC-NC 251242_at At3g61860 arginine/serine-rich splicing factor RSP31 (RSP31) identical to SP|P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana} (68416.m06947) 3612 Not regulated NC-NC-NC 251247_at At3g62140 expressed protein: expression supported by MPSS (68416.m06982) 3613 Not regulated NC-NC-NC 251253_at At3g62240 zinc finger (C2H2 type) family protein contains Pfam PF00096: Zinc finger, C2H2 type (68416.m06992) 3614 Not regulated NC-NC-NC 251254_at At3g62270 anion exchange family protein contains similarity to anion exchanger 3, cardiac splice form - Rattus norvegicus, PIR: A42497 (68416.m06996) 3615 Not regulated NC-NC-NC 251259_at At3g62260 protein phosphatase 2C, putative/PP2C, putative phosphoprotein phosphatase (EC 3.1.3.16) 1A-alpha - Homo sapiens, PIR: S22423 (68416.m06994) 3616 Not regulated NC-NC-NC 251265_at At3g62310 RNA helicase, putative similar to SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43 (Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain (68416.m07000) 3617 Not regulated NC-NC-NC 251269_at At3g62360 expressed protein (68416.m07005) 3618 Not regulated NC-NC-NC 251270_at At3g62370 expressed protein (68416.m07006) 3619 Not regulated NC-NC-NC 251237_at At3g62420 bZIP transcription factor family protein similar to common plant regulatory factor 6 GI: 9650826 from [Petroselinum crispum] (68416.m07012) 3620 Not regulated NC-NC-NC 251240_at At3g62450 expressed protein (68416.m07015) 3621 Not regulated NC-NC-NC 251241_s_at At3g62460 expressed protein contains Pfam profile PF04396: Protein of unknown function, DUF537 (68416.m07017) GTP-binding protein, putative similar to GTP-binding protein SAR1A (SP: O04834) [Arabidopsis thaliana]; small GTP-binding protein 3622 Not regulated NC-NC-NC 251217_at At3g62560 Bsar1a - Brassica campestris, EMBL: U55035 (68416.m07028) 3623 Not regulated NC-NC-NC 251222_at At3g62580 expressed protein (68416.m07030) 3624 Not regulated NC-NC-NC 251233_at At3g62800 double-stranded RNA-binding domain (DsRBD)-containing protein weak similarity to SP|P19525 interferon-induced, double- stranded RNA-activated protein kinase (EC 2.7.1.—) {Homo sapiens}; contains Pfam profile PF00035: Double-stranded RNA binding motif (68416.m07055) 3625 Not regulated NC-NC-NC 251208_at At3g62880 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein contains PFam PF02466: Mitochondrial import inner membrane translocase subunit Tim17 (68416.m07064) 3626 Not regulated NC-NC-NC 251183_at At3g62630 expressed protein (68416.m07035) 3627 Not regulated NC-NC-NC 251185_at At3g62870 60S ribosomal protein L7A (RPL7aB) 60S RIBOSOMAL PROTEIN L7A-Oryza saliva, SWISSPROT: RL7A_ORYSA (68416.m07063) 3628 Not regulated NC-NC-NC 251186_at At3062790 NADH-ubiquinone oxidoreductase-related contains weak similarity to NADH-ubiquinone oxidoreductase 15 kDa subunit (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-15 kDa) (CI-15 kDa) (Swiss-Prot: O43920) [Homo sapiens] (68416.m07054) 3629 Not regulated NC-NC-NC 251189_at At3g62650 expressed protein putative mitochondrial carrier protein At2g47490 - Arabidopsis thaliana, EMBL: AC002535 (68416.m07037) 3630 Not regulated NC-NC-NC 251192_at At3g62720 galactosyl transferase GMA12/MNN10 family protein low similarity to alpha-1,2-galactosyltransferase, Schizosaccharomyces pombe [SP|Q09174] (68416.m07045) 3631 Not regulated NC-NC-NC 251198_at At3g62970 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain PF00097: Zinc finger, C3HC4 type (RING finger) (68416.m07074) 3632 Not regulated NC-NC-NC 251205_at At3g83080 glutathione peroxidase, putative phospholipid-hydroperoxide glutathione peroxidase. spinach, PIR: JC5619 (68416.m07085) 3633 Not regulated NC-NC-NC 251150_at At3g63120 cyclin family protein similar to cyclin 2 [Trypanosoma brucei] GI: 7339572, cyclin 6 [Trypanosoma cruzi] GI: 12005317; contains Pfam profile PF00134: Cyclin, N-terminal domain (68416.m07089) 3634 Not regulated NC-NC-NC 251151_at At3g63170 expressed protein (68416.m07095) 3635 Not regulated NC-NC-NC 251153_at At3g63000 NPL4 family protein contains Pfam domain, PF05021: NPL4 family (68416.m07077) 3636 Not regulated NC-NC-NC 251155_at At3g63160 expressed protein (68416.m07093) 3637 Not regulated NC-NC-NC 251158_at At3g63150 GTP-binding protein-related low similarity to SP|Q38912 RAC-like GTP binding protein ARAC3 (GTP-binding protein ROP6) (Arabidopsis thaliana); contains Pfam profile PF00036: EF hand (domain) (68416.m07092) 3638 Not regulated NC-NC-NC 251161_at At3g63290 expressed protein (68416.m07113) 3639 Not regulated NC-NC-NC 251163_at At3g63310 expressed protein low similarity to N-methyl-D-aspartate receptor-associated protein [Drosophila melanogaster] GI: 567104; contains Pfam profile PF01027: Uncharacterized protein family UPF0005 (68416.m07121) 3640 Not regulated NC-NC-NC 251169_at At3g63210 expressed protein identical to senescence-associated protein SAG102 (GI::22331931) [Arabidopsis thaliana] (unpublished); contains Pfam profile PF04570: Protein of unknown function (DUF581) (68416.m07101) 3641 Not regulated NC-NC-NC 251170_at At3g63260 protein kinase, putative (MRK1) identical to ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079 (68416.m07108) 3642 Not regulated NC-NC-NC 251171_at At3g63220 ketch repeat-containing F-box family protein contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain (68416.m07102) 3643 Not regulated NC-NC-NC 251172_at At3g63190 ribosome recycling factor, chloroplast, putative/ribosome releasing factor, chloroplast, putative similar to SP|P82231 Ribosome recycling factor, chloroplast precursor (Ribosome releasing factor, chloroplast) (RRF) (CpFrr) (RRFHCP) {Spinacia oleracea}; contains Pram profile PF01765: ribosome recycling factor (68416.m07099) 3644 Not regulated NC-NC-NC 251176_at At3g63380 calcium-transporting ATPase, plasma membrane-type, putative/Ca(2+)-ATPase, putative (ACA12) identical to SP|Q9LY77 Potential calcium-transporting ATPase 12, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 12) {Arabidopsis thaliana}; similar to SP|Q9LF79 Calcium-transporting ATPase 8, plasma membrane-type (EC 3.6.3.8) (Ca2+-ATPase, isoform 8) {Arabidopsis thaliana}; contains InterPro Accession IPR006069: Cation transporting ATPase (68416.m07135) 3645 Not regulated NC-NC-NC 251177_at At3g63400 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein similar to cyclophylin [Digitalis lanata] GI: 1563719; contains Pfam profile PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type; contains AT-donor splice site at intron 9 (68416.m07137) 3646 Not regulated NC-NC-NC 251145_at At3g63500 expressed protein (68416.m07152) 3647 Not regulated NC-NC-NC 251146_at At3g63520 9-cis-epoxycarotenoid dioxygenase/neoxanthin cleavage enzyme/NCED1/carotenoid cleavage dioxygenase 1 (CCD1) identical to putative 9-cis-epoxy-carotenoid dioxygenase [GI: 3096910]; contains Pfam profile PF03055: Retinal pigment epithelial membrane protein (68416.m07155) 3648 Not regulated NC-NC-NC 251117_at At3g63390 expressed protein (68416.m07136) 3649 Not regulated NC-NC-NC 251121_at At3g63420 heterotrimeric G protein gamma-subunit (AGG1) (68416.m07140) 3650 Not regulated NC-NC-NC 251125_at At5g01060 protein kinase family protein contains eukaryotic protein kinase domain, INTERPRO: IPR000719 (68418.m00009) 3651 Not regulated NC-NC-NC 251138_at At5g01160 e-cadherin binding protein-related contains weak similarity to E-cadherin binding protein E7 [Mus musculus GP|9622093|gb|AAF89617 (68418.m00020) 3652 Not regulated NC-NC-NC 251142_at At5g01015 expressed protein (68418.m00003) 3653 Not regulated NC-NC-NC 251089_at At5g01390 DNAJ heat shock protein, putative similar to SP|Q9QYJ3 DnaJ homolog subfamily B member 1 (Heat shock 40 kDa protein 1) {Mus musculus}; contains Pfam profile PF00226: DnaJ domain (68418.m00052) 3654 Not regulated NC-NC-NC 251091_at At5g01410 stress-responsive protein, putative similar to ethylene-inducible protein HEVER [Hevea brasiliensis] SWISS-PROT: Q39963 (68418.m00054) 3655 Not regulated NC-NC-NC 251094_at At5g01350 expressed protein (68418.m00048) 3656 Not regulated NC-NC-NC 251106_at At5g01500 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein (68418.m00064) 3657 Not regulated NC-NC-NC 251108_at At5g01620 expressed protein several hypothetical proteins - Arabidopsis thaliana (68418.m00077) 3658 Not regulated NC-NC-NC 251082_at At5g01530 chlorophyll A-B binding protein CP29 (LHCB4) identical to CP29 [Arabidopsis thaliana] GI: 298036; contains Pfam profile: PF00504 chlorophyll A-B binding protein (68418.m00068) 3659 Not regulated NC-NC-NC 251058_at At5g01790 expressed protein (68418.m00098) 3660 Not regulated NC-NC-NC 251077_at At5g01980 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (58418.m00117) 3661 Not regulated NC-NC-NC 251022_at At5g02150 expressed protein (68418.m00136) 3662 Not regulated NC-NC-NC 251029_at At5g02050 mitochondrial glycoprotein family protein/MAM33 family protein low similarity to SUAPRGA1 [Emericella nidulans] GI: 6562379; contains Pfam profile PF02330: Mitochondrial glycoprotein (68418.m00126) 3663 Not regulated NC-NC-NC 251032_at At5g02030 homeodomain protein (BELLRINGER) several homeodomain proteins; (68418.m00123) 3664 Not regulated NC-NC-NC 251034_at At5g02040 prenylated rab acceptor (PRA1) family protein contains Pfam PF03208: PRA1 family protein (68418.m00124) 3665 Not regulated NC-NC-NC 251037_at At5g02100 oxysterol-binding family protein similar to SWH1 [Saccharomyces cerevisiae] GI: 402658; contains Pfam profile PF01237: Oxysterol- binding protein (68418.m00131) 3666 Not regulated NC-NC-NC 251038_at At5g02240 expressed protein (68418.m00146) 3667 Not regulated NC-NC-NC 251048_at At5g02410 DIE2/ALG10 family contains Pfam PF04922: DIE2/ALG10 family (68418.m00164) 3668 Not regulated NC-NC-NC 250991_at At5g02380 metallothionein protein 2B (MT-2B) identical to SWISS-PROT: Q38805 metallothionein-like protein 2B (MT-2B) [Arabidopsis thaliana] (68418.m00161) 3669 Not regulated NC-NC-NC 250992_at At5g02260 expansin, putative (EXP9) similar to expansin precursor GI: 4138914 from [Lycopersicon esculentum]; alpha-expansin gene family, PMID: 11641069 (68418.m00149) 3670 Not regulated NC-NC-NC 250993_at At5g02280 synbindin, putative similar to Swiss-Prot: Q9ES56 synbindin (TRS23 homolog) [Mus musculus] (68418.m00151) 3671 Not regulated NC-NC-NC 250998_at At5g02620 ankyrin repeat family protein contains ankyrin repeat domains, Pfam: PF00023 (68418.m00198) 3672 Not regulated NC-NC-NC 251008_at At5g02710 expressed protein contains Pfam PF03692: Uncharacterised protein family (UPF0153) (68418.m00210) 3673 Not regulated NC-NC-NC 251011_at At5g02560 histone H2A, putative similar to histone H2A from Pisum sativum SP|P25470, Zea mays SP|P40280, Petroselinum crispum SP|P19177; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 (68418.m00190) 3674 Not regulated NC-NC-NC 251013_at At5g02540 short-chain dehydrogenase/reductase (SDR) family protein contains INTERPRO family IPR002198 Short-chain dehydrogenase/reductase (SDR) superfamily (68418.m00188) 3675 Not regulated NC-NC-NC 250986_at At5g02850 hydroxyproline-rich glycoprotein family protein (68416.m00228) 3676 Not regulated NC-NC-NC 250988_at At5g02880 HECT-domain-containing protein/ubiquitin-transferase family protein/armadillo/beta-catenin-like repeat-containing protein similar to SP|Q14669 Thyroid receptor interacting protein 12 (TRIP12) {Homo sapiens}; contains Pfam profiles PF00632: HECT-domain (ubiquitin-transferase), PF00514: Armadillo/beta-catenin-like repeat (68418.m00231) 3677 Not regulated NC-NC-NC 250967_at At5g02790 In2-1 protein, putative similar to In2-1, Zea mays, EMBL: X58573 (68418.m00221) 3678 Not regulated NC-NC-NC 250971_at At5g02810 pseudo-response regulator 7 (APRR7) identical to pseudo-response regulator 7 GI: 10281004 from [Arabidopsis thaliana] (68418.m00223) 3679 Not regulated NC-NC-NC 250972_at At5g02840 myb family transcription factor contains PFAM profile: PF00249 myb-like DNA binding domain (68418.m00226) 3680 Not regulated NC-NC-NC 250928_at At5g03280 ethylene-insensitive 2 (EIN2) identical to EIN2 {Arabidopsis thaliana} gi|5231113|gb|AAD41076; member of the natural resistance- associated macrophage protein (NRAMP) metal transporter family, PMID: 11500563; metal transport capacity has not been shown, PMID: 11500563, PMID: 1038174 (68418.m00277) 3681 Not regulated NC-NC-NC 250929_at At5g03290 isocitrate dehydrogenase, putative/NAD+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase (NAD+) [Nicotiana tabacum] GI: 3021506 (68418.m00279) 3682 Not regulated NC-NC-NC 250931_at At5g03200 zinc finger (C3HC4-type RING finger) family protein contains weak similarity to zinc finger proteins (68418.m00268) 3683 Not regulated NC-NC-NC 250932_s_at At5g03220 transcriptional co-activator-related contains weak similarity to Cofactor required for Sp1 transcriptional activation subunit 9 (Transcriptional co-activator CRSP33) (RNA polymerase transcriptional regulation mediator subunit 7 homolog) (hMED7) (Activator- recruited cofactor 34 kDa component) (ARC34) (Swiss-Prot: O43513) [Homo sapiens] (68418.m00270) 3684 Not regulated NC-NC-NC 250934_at At5g03030 DNAJ heat shock N-teminal domain-containing protein contains Pfam profile PF00226 DnaJ domain; DNAJ domain-containing protein, Homo sapiens, EMBL: AF126743 (68418.m00251) 3685 Not regulated NC-NC-NC 250941_at At5g03320 protein kinase, putative similar to serine/threonine-protein kinase NAK [Arabidopsis thaliana] SWISS-PROT: P43293 (68418.m00283) 3686 Not regulated NC-NC-NC 250954_at At5g03520 Ras-related TP-binding protein, putative similar to GTP-binding protein GI: 871508 from [Pisum sativum] (68418.m00308) 3687 Not regulated NC-NC-NC 250921_at At5g03460 expressed protein (68416.m00302) 3688 Not regulated NC-NC-NC 250923_at At5g03455 rhodanese-like domain-containing protein contains Rhodanese-like domain PF: 00581 (68418.m00301) 3689 Not regulated NC-NC-NC 250897_at At5g03430 phosphoadenosine phosphosulfate (PAPS) reductase family protein low similarity to SP|P38913 FAD synthetase (EC 2.7.7.2) {Saccharomyces cerevisiae}; contains Pfam profiles PF01507: Phosphoadenosine phosphosulfate reductase family, PF00994: Probable molybdopterin binding domain (68418.m00296) 3690 Not regulated NC-NC-NC 250899_at At5g03340 cell division cycle protein 48, putative/CDC48, putative very strong similarity to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana}; contains Pfam profiles PF00004: ATPase AAA family, PF02359: Cell division protein 48 (CDC48) N-terminal domain; supporting cDNA gi|26449351|dbj|AK117125.1|(68418.m00286) 3691 Not regulated NC-NC-NC 250900_at At5g03470 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B′ (B′atpha) similar to SWISS-PROT: Q28653 serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit, delta isoform (PP2A, B subunit, B′ delta isoform, PP2A, B subunit, B56 delta isoform, PP2A, B subunit, PR61 data isoform, PP2A, B subunit, R5 delta isoform, PP2A, B subunit, B′-gamma) [Oryctotagus cuniculus]; contains Pfam domain. PF01603: Protein phosphatase 2A regulatory B subunit (B56 family) (68418.m00303) 3692 Not regulated NC-NC-NC 250912_at At5g03740 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type (68418.m00335) 3693 Not regulated NC-NC-NC 250916_at At5g03630 monodehydroascorbate reductase, putative monodehydroascorbate reductase (NADH), cucumber, PIR: JU0182 (68418.m00322) 3694 Not regulated NC-NC-NC 250919_at At5g03660 expressed protein low similarity to outer surface protein F [Borrelia burgdorferi] GI: 488482; contains Pfam profile PF04949: Family of unknown function (DUF662) (68418.m00325) 3695 Not regulated NC-NC-NC 250866_at At5g03905 hesB-like domain-containing protein low similarity to HesB [Cyanothece sp. PCC 8801] GI: 2183309; contains Pfam profile PF01521: HesB-like domain (68418.m00370) 3696 Not regulated NC-NC-NC 250877_at At5g04040 patatin-related contains Patatin domain PF01734 (68418.m00384) 3697 Not regulated NC-NC-NC 250883_at At5g03970 F-box family protein predicted proteins, Arabidopsis thaliana (68418.m00377) 3698 Not regulated NC-NC-NC 250884_at At5g03940 signal recognition particle 54 kDa protein, chloroplast/54 chloroplast protein/SRP54 (FFC) identical to Swiss-Prot: P37107 signal recognition particle 54 kDa protein, chloroplast precursor (SRP54) (54 chloroplast protein) (54CP) (FFC) [Arabidopsis thalliana] (68418.m00374) 3699 Not regulated NC-NC-NC 250886_at At5g04440 expressed protein (68418.m00441) 3700 Not regulated NC-NC-NC 250842_at At5g04490 phosphatidate cytidylyltransferase family protein contains Pfam profile: PF01148 phosphatidate cytidylyltransferase (68418.m00448) 3701 Not regulated NC-NC-NC 250843_at At5g04430 KH domain-containing protein NOVA, putative astrocytic NOVA-like RNA-binding protein, Homo sapiens, U70477 (68418.m00437) 3702 Not regulated NC-NC-NC 250844_at At5g04470 expressed protein (68418.m00445) 3703 Not regulated NC-NC-NC 250845_at At5g04600 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif] (RRM) (68418.m00460) 3704 Not regulated NC-NC-NC 250849_at At5g04410 no apical meristem (NAM) family protein contains Pfam PF02385: No apical meristem (NAM) protein; supporting cDNA gi|6456750|gb|AF201456.1|AF201456 (68418.m00433) 3705 Not regulated NC-NC-NC 250856_at At5g04810 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile: PF01535 PPR repeat (68418.m00503) 3706 Not regulated NC-NC-NC 250858_at At5g04760 myb family transcription factor contains Pfam profile: PF00249 myb-tike DNA-binding domain (68418.m00490) 3707 Not regulated NC-NC-NC 250862_s_at At5g04800 40S ribosomal protein S17 (RPS17D) 40S ribosomal protein S17, Lycopersicon esculentum, EMBL: AF161704 (68418.m00498) 3708 Not regulated NC-NC-NC 250863_at At5g04750 F1F0-ATPase inhibitor protein, putative similar to F1F0-ATPase inhibitor protein [Oryza sativa (japonica cultivar-group)] gi|5106371|dbj|BAA81661 (66418.m00488) 3709 Not regulated NC-NC-NC 250829_at At5g04720 disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. (68418.m00482) 3710 Not regulated NC-NC-NC 250811_at At5g05110 cysteine protease inhibitor, putative/cystatin, putative similar to cysteine proteinase inhibitor [Glycine max] GI: 1944342; contains Pfam profile PF00031: Cystatin domain (68418.m00542) 3711 Not regulated NC-NC-NC 250812_at At5g04900 short-chain dehydrogenese/reduclase (SDR) family protein contains INTERPRO family IPR002198 Short-chain dehydrogenase/reductase (SDR) superfamily (68418.m00515) 3712 Not regulated NC-NC-NC 250813_at At5g05000 translocate of chloroplast 34 (TOC34)/GTP-binding protein (OEP34) contains Pfam PF04548: AIG1 family: contains TIGRFAM TIGR00991: GTP-binding protein and TIGR00231: small GTP-binding protein domain; 99.7% identical to atToc34 protein (GI: 11557975) [Arabidopsis thaliana]; similar to Chain A, Pea Toc34-A Novel Gtpase Of The Chloroplast Protein Translocon (GI: 1865558) [Pisum sativum]: almost identical to SP: Q38906 Translocase of chloroplast 34; identical to cDNA GTP-binding protein (OEP34) GI: 1151243 (68418.m00529) 3713 Not regulated NC-NC-NC 250814_at At5g05080 ubiquitin-conjugating enzyme, putative similar to SP|Q16763 Ubiquitin-conjugating enzyme E2-24 kDa (EC 6.3.2.19) (Ubiquitin- protein ligase) (Ubiquitin carrier protein) {Homo sapiens}; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme (68418.m00539) 3714 Not regulated NC-NC-NC 250815_s_at At5g05060 expressed protein (68418.m00537) 3715 Not regulated NC-NC-NC 250816_at At5g05010 clathrin adaptor complexes medium subunit-related contains pfam profile: PF00928 adaptor complexes medium subunit family (68418.m00532) 3716 Not regulated NC-NC-NC 250824_at At5g05200 ABC1 family protein contains Pfam domain, PF03109: ABC1 family (68418.m00554) 3717 Not regulated NC-NC-NC 250792_at At5g05520 outer membrane OMP85 family protein contains Pfam profile PF01103: outer membrane protein, OMP85 family (68418.m00599) 3718 Not regulated NC-NC-NC 250768_at At5g05670 expressed protein (68418.m00623) 3719 Not regulated NC-NC-NC 250742_at At5g05800 expressed protein (68418.m00638) 3720 Not regulated NC-NC-NC 250749_at At5g05780 26S proteasome non-ATPase regulatory subunit 7, putative/28S proteasome regulatory subunit S12, putative/MOV34 protein, putative contains similarity to 26s proteasome regulatory subunit s12 (proteasome subunit p40) (mov34 protein) SP: P26516 from [Mus musculus]: contains Pfam profile PF01398: Mov34/MPN/PAD-1 family (68418.m00636) 3721 Not regulated NC-NC-NC 250753_at At5g05880 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase (68418.m00844) 3722 Not regulated NC-NC-NC 250754_at At5g05700 arginine-tRNA-protein transferase 1/arginyltransferase 1/arginyl-tRNA-protein transferase 1 (ATE1) identical to SP|Q9ZT48 Arginine-tRNA-protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginyl-tRNA-protein transferase 1) {Arabidopsis thaliana} (68418.m00627) 3723 Not regulated NC-NC-NC 250757_at At5g05980 dihydrofolate synthetase/folylpolyglutamate synthetase (DHFS/FPGS2) nearly identical to gi: 17976705; identical to cDNA dihydrofolate synthetase/folylpolyglutamate synthetase (dhfs/fpgs2 gene) GI: 17976704 (68418.m00662) 3724 Not regulated NC-NC-NC 250758_at At5g08000 eukaryotic translation initiation factor 3G, putative/elF3g, putative similar to eukaryotic translation initiation factor 3g [Arabidopsis thaliana] GI: 12407751; contains interPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68418.m00665) 3725 Not regulated NC-NC-NC 250764_at At5g05960 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 (68418.m00659) 3726 Not regulated NC-NC-NC 250765_at At5g05930 guanylyl cyclase-related (GC1) similar to guanylyl cyclase (GC1) GI: 21436486 from [Arabidopsis thaliana]; identical to cDNA putative guanylate cyclase GI: 21436486 (68418.m00655) 3727 Not regulated NC-NC-NC 250707_at At5g05950 expressed protein (68418.m00658) 3728 Not regulated NC-NC-NC 250711_at At5g06110 DNAJ heat shock N-terminal domain-containing protein/cell division protein-related similar to GlsA [Volvox carteri f. nagariensis] GI: 4633129; contains Pfam profiles PF00226 DnaJ domain, PF00249 Myb-like DNA-binding domain (68418.m00679) 3729 Not regulated NC-NC-NC 250713_at At5g06130 chaperone protein dnaJ-related similar to unknown protein (pir||T00468): contains Pfam PF00684: DnaJ central domain (4 repeats) (68418.m00681) 3730 Not regulated NC-NC-NC 250714_at At5g06140 phox (PX) domain-containing protein similar to SP|O60749 Sorting nexin 2 {Homo sapiens}; contains Pfam profile PF00787: PX domain (68418.m00683) 3731 Not regulated NC-NC-NC 250721_at At5g06210 RNA-binding protein, putative contains similarity to RNA-binding protein from [Nicotiana tabacum] GI: 15822703, [Nicotiana sylvestris] GI: 624925, [Solanum tuberosum] GI: 15822705; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68418.m00693) 3732 Not regulated NC-NC-NC 250723_at At5g06300 lysine decarboxylase family protein contains Pfam profile PF03641: lysine decarboxylase family (68418.m00706) 3733 Not regulated NC-NC-NC 250727_at At5g06430 thioredoxin-related contains weak similarity to Swiss-Prot: Q9SEU7 thioredoxin M-type 3, chloroplast precursor (TRX-M3) [Arabidopsis thaliana] (68418.m00720) 3734 Not regulated NC-NC-NC 250734_at At5g06270 expressed protein (68418.m00702) 3735 Not regulated NC-NC-NC 250735_at At5g06280 expressed protein similar to unknown protein (pir||T08447) (68418.m00703) 3736 Not regulated NC-NC-NC 250736_s_at At5g06420 zinc finger (CCCH-type/C3HC4-type RING finger) family protein contains Pfam domains PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and PF00097: Zinc finger, C3HC4 type (RING finger) (68418.m00718) 3737 Not regulated NC-NC-NC 250703_at At5g06360 ribosomal protein S8e family protein contains Pfam profile PF01201: Ribosomal protein S8e (68418.m00712) 3738 Not regulated NC-NC-NC 250675_at At5g06260 nucleolar protein-related contains weak similarity to nucleolar protein C7C (GI: 13540302) [Rattus norvegicus] (68418.m00700) 3739 Not regulated NC-NC-NC 250680_at At5g06570 expressed protein similar to PrMC3 [Pinus radiata] GI: 5487873 (68418.m00741) 3740 Not regulated NC-NC-NC 250682_x at At5g06630 proline-rich extensin-like family protein contains proline-rich extensin domains. INTERPRO: IPR002965 (68418.m00749) 3741 Not regulated NC-NC-NC 250683_x_at At5g06640 proline-rich extensin-like family protein contains proline-rich extensin domains. INTERPRO: IPR002965 (68418.m00750) 3742 Not regulated NC-NC-NC 250687_at At5g06660 expressed protein contains PF05809: Eukaryotic protein of unknown function (DUF841) (68418.m00752) 3743 Not regulated NC-NC-NC 250692_at At5g06560 expressed protein contains Pfam profile PF04576: Protein of unknown function. DUF593 (68418.m00740) 3744 Not regulated NC-NC-NC 250643_at At5g06780 emsy N terminus domain-containing protein/ENT domain-containing protein contains Pfam profile PF03735: ENT domain (68418.m00766) 3745 Not regulated NC-NC-NC 250644_at At5g06750 protein phosphatase 2C family protein/PP2C family protein similar to Ser/Thr protein phosphatase 2C (PP2C8) (GI: 15020818) [Arabidopsis thaliana]: similar to protein phosphatase 2C (GI: 3608412) [Mesembryanthemum crystallinum]; contains Pfam PF00481: Protein phosphatase 2C domain; (68418.m00763) 3746 Not regulated NC-NC-NC 250649_at At5g06690 thioredoxin family protein low similiarity to SP|P34723 Thioredoxin {Penicillium chrysogenum}; contains Pfam profile: PF00085 Thioredoxin (68418.m00756) 3747 Not regulated NC-NC-NC 250663_at At5g07110 prenylated rab acceptor (PRA1) family protein weak similarity to prenylated Rab acceptor 1 (PRA1) [Homo sapiens] GI: 4877285; contains Pfam profile PF03208: Prenylated rab acceptor (PRA1) (68418.m00810) 3748 Not regulated NC-NC-NC 250667_at At5g07090 40S ribosomal protein S4 (RPS4B) (68418.m00804) 3749 Not regulated NC-NC-NC 250669_at At5g06870 polygalacturonase inhibiting protein 2 (PGIP2) identical to polygalacturonase inhibiting protein 2 (PG|P2) [Arabidopsis thaliana] gi|7800201|gb|AAF69828; contains leucine rich-repeat (LRR) domains Pfam: PF00560, INTERPRO: IPR001611 (68418.m00777) 3750 Not regulated NC-NC-NC 250672_at At5g06910 DNAJ heat shock protein, putative (J6) identical to DnaJ homologue [Arabidopsis thaliana] GI: 2689720; contains Pfam profile PF00226 DnaJ domain (68418.m00781) 3751 Not regulated NC-NC-NC 250615_at At5g07270 ankyrin repeat family protein contains ankyrin repeats, Pfam: PF00023 (68418.m00829) 3752 Not regulated NC-NC-NC 250618_at At5g07220 BAG domain-containing protein contains Pfam: PF02179 BAG domain (68418.m00823) 3753 Not regulated NC-NC-NC 250621_at At5g07250 rhomboid family protein contains PFAM domain PF01694, Rhomboid family (68418.m00827) 3754 Not regulated NC-NC-NC 250628_01 At5g07350 tudor domain-containing protein/nuclease family protein contains Pfam domains PF00567: Tudor domain and PF00565: Staphylococcal nuclease homologue (68418.m00839) 3755 Not regulated NC-NC-NC 250627_at At5g07360 amidase family protein low similarity to enantiomerase-selective amidase [Rhodococcus sp.] GI: 152052; contains Pfam profile PF01425: Amidase (68418.m00840) 3756 Not regulated NC-NC-NC 250807_at At5g07370 inositol polyphosphate 6-/3-/5-kinase 2a (IPK2a) contains Pfam domain, PF03770: Inositol polyphosphate kinase (68418.m00841) 3757 Not regulated NC-NC-NC 250581_at At5g07300 copine, putative strong similarity to BONZAI1 [Arabidopsis thaliana] GI: 15487382; contains Pfam profile PF00168: C2 domain (68418.m00834) 3758 Not regulated NC-NC-NC 250582_at At5g07580 ethylene-responsive element-binding family protein contains similarity to ethylene responsive element binding factor 5 (AtERF5) (Swiss-Prot: O80341) [Arabidopsis thaliana]; contains Pfam PF00847: AP2 domain (68418.m00868) 3759 Not regulated NC-NC-NC 250584_at At5g07590 WD-40 repeat protein family contains 3 WD-40 repeats (PF00400); similarity to WD-repeat protein 8 (WDR8)(SP: Q9P2S5] [HOMO SAPIENS] (68416.m00870) 3760 Not regulated NC-NC-NC 250590_at At5g07710 exonuclease family protein contains exonuclease domain, Pfam: PF00929 (68418.m00884) 3761 Not regulated NC-NC-NC 250604_at At5g07830 glycosyl hydrolase family 79 N-terminal domain-containing protein similar to beta-glucuronidase GI: 8918740 from [Scutellaria baicalensis] (68418.m00898) 3762 Not regulated NC-NC-NC 250577_at At5g07910 leucine-rich repeat family protein contains leucine rich repeat (LRR) domains, Pfam: PF00560 (68418.m00914) 3763 Not regulated NC-NC-NC 250553_at At5g07960 expressed protein contains Pfam PF03869: Uncharacterised protein family (UPF0139) (68418.m00924) 3764 Not regulated NC-NC-NC 250562_at At5g08040 expressed protein (68418.m00938) 3765 Not regulated NC-NC-NC 250563_at At5g08050 expressed protein predicted protein, Arabidopsis thaliana (68418.m00938) 3766 Not regulated NC-NC-NC 250584_at At5g08060 expressed protein sigma factor F inhibitor spoIIAB, Bacillus megaterium, PIR: B48402 (68418.m00940) 3767 Not regulated NC-NC-NC 250565_at At5g08000 glycosyl hydrolase family protein 17 similar to beta-1,3-glucanase GI: 15150341 from [Camellia sinensis]; C-terminal homology only (68418.m00931) 3768 Not regulated NC-NC-NC 250569_at At5g08130 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain (68418.m00948) 3769 Not regulated NC-NC-NC 250575_at At5g08240 expressed protein (68418.m00967) 3770 Not regulated NC-NC-NC 250543_at At5g08190 TATA-binding protein-associated phosphoprotein Dr1 protein, putative similar to Dr1 protein homolog (SP: P49592) [Arabidopsis thaliana]; similar to TATA-binding protein-associated phosphoprotein (Down-regulator of transcription 1) (DR1 protein) (SP: Q01658) [Homo sapiens]; contains Pfam PF00808: Histone-like transcription factor (CBF/NF-Y) and archaeal histone (68418.m00957) 3771 Not regulated NC-NC-NC 250544_at At5g08080 syntaxin, putative (SYP132) similar to SP|Q9ZSD4 Syntaxin 121 (AtSYP121) (Syntaxin-related protein At-Syr1) {Arabidopsis thaliana} (68418.m00942) 3772 Not regulated NC-NC-NC 250545_at At5g08160 serine/threonine protein kinase, putative identical to serine/threonine protein kinase {Arabidopsis thaliana} gi|2109293|gb|AAB69123 (68418.m00952) 3773 Not regulated NC-NC-NC 250546_at At5g08180 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT: P32495 and PMID: 2063628. (68416.m00955) 3774 Not regulated NC-NC-NC 250547_at At5g08100 L-asparaginase/L-asparagine amidohydrolase identical to Swiss-Prot: P50287 L-asparaginase (EC 3.5.1.1) (L-asparagine amidohydrolase) [Arabidopsis thaliana] (68418.m00944) 3775 Not regulated NC-NC-NC 250517_at At5g08260 serine carboxypeptidase S10 family protein similar to Serine carboxypeptidase II chains A and B (SP: P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)]; carboxypeptidase D - Triticum aestivum, PIR: A29639 (68418.m00971) 3776 Not regulated NC-NC-NC 250518_at At5g08140 3777 Not regulated NC-NC-NC 250525_at At5g08550 expressed protein (68418.m01017) 3778 Not regulated NC-NC-NC 250526_at At5g08570 pyruvate kinase, putative similar to pyruvate kinase, cytosolic isozyme [Glycine max] SWISS-PROT: Q42806 (68418.m01020) 3779 Not regulated NC-NC-NC 250529_at At5g08610 DEAD box RNA helicase (RH26) strong similarity to RNA helicase RH26 [Arabidopsis thaliana] GI: 3776025; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH26 GI: 3776024 (68418.m01024) 3780 Not regulated NC-NC-NC 250531_at At5g08650 GTP-binding protein LepA, putative (68418.m01029) 3781 Not regulated NC-NC-NC 250532_at At5g08540 expressed protein similar to unknown protein (pir||T27191) (68418.m01016) 3782 Not regulated NC-NC-NC 250536_at At5g08535 D111/G-patch domain-containing protein contains Pfam profile PF01585: G-patch domain; contains a 2n1 micro-exon, as identified using GeneSeqer. (68418.m01014) 3783 Not regulated NC-NC-NC 250538_at At5g08620 DEAD box RNA helicase (RH25) identical to RNA helicase [Arabidopsis thaliana] GI: 3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain (68418.m01025) 3784 Not regulated NC-NC-NC 250539_at At5g08560 transducin family protein/WD-40 repeat family protein contains 7 WD-40 repeats (PF00400); similar to will die slowly protein (WDS) (SP: Q9V3J8) [Drosophila melanogaster] (68418.m01018) 3785 Not regulated NC-NC-NC 250540_at At5g08580 calcium-binding EF hand family protein contains INTERPRO: IPR002048 calcium-binding EF-hand domain (68418.m01021) 3786 Not regulated NC-NC-NC 250516_at At5g09620 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein predicted proteins, Arabidopsis thaliana and Drosophila melanogaster contains Pfam profile PF00564: PB1 domain (68418.m01113) 3787 Not regulated NC-NC-NC 250490_at At5g09760 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase (68418.m01130) 3788 Not regulated NC-NC-NC 250495_at At5g09770 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17 (68418.m01131) 3789 Not regulated NC-NC-NC 250496_at At5g09650 inorganic pyrophosphatase family protein similar to SP|Q15181 Inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate {Homo sapiens}; contains Pfam profile PF00719: inorganic pyrophosphatase (68418.m01116) 3790 Not regulated NC-NC-NC 250502_at At5g09590 heat shock protein 70/HSP70 (HSC70-5) identical to heat shock protein 70 [Arabidopsis thaliana] GI: 6746590 (68418.m01110) 3791 Not regulated NC-NC-NC 250512_at At5g09995 expressed protein (68418.m01155) 3792 Not regulated NC-NC-NC 250454_at At5g09830 BolA-like family protein contains Pfam profile: PF01722 BolA-like protein (68418.m01137) 3793 Not regulated NC-NC-NC 250457_at At5g09880 RNA recognition motif (RRM)-containing protein (68418.m01142) 3794 Not regulated NC-NC-NC 250459_at At5g09860 nuclear matrix protein-related low similarity to nuclear matrix protein p84 [Homo sapiens] GI: 550058 (68418.m01140) 3795 Not regulated NC-NC-NC 250480_at At5g09850 transcription elongation factor-related low similarity to SP|P10712 Transcription elongation factor S-II (Transcription elongation factor A) {Mus musculus} (68418.m01139) 3796 Not regulated NC-NC-NC 250470_at At5g10160 beta-hydroxyacyl-ACP dehydratase, putative similar to beta-hydroxyacyl-ACP dehydratase from Toxoplasma gondii [GI: 3850997]: contains Pfam profile PF01377 Thioester dehydratase (68418.m01176) 3797 Not regulated NC-NC-NC 250472_at At5g10210 expressed protein (68418.m01183) 3798 Not regulated NC-NC-NC 250475_at At5g10180 sulfate transporter identical to sulfate transporter [Arabidopsis thaliana] GI: 2114104 (68418.m01178) 3799 Not regulated NC-NC-NC 250484_at At5g10240 asparagine synthetase 3 (ASN3) identical to asparagine synthetase (ASN3) [Arabidopsis thaliana] GI: 3859534 (68418.m01189) 3800 Not regulated NC-NC-NC 250452_at At5g10630 elongation factor 1-alpha, putative/EF-1-alpha, putative contains similarity to SWISS-PROT: Q9YAV0 elongation factor 1-alpha (EF-1-alpha) [Aeropyrum permix] (68418.m01231) 3801 Not regulated NC-NC-NC 250424_at At5g10550 DNA-binding bromodomain-containing protein low similarity to kinase [Gallus gallus] GI: 1370092; contains Pfam profile PF00439: Bromodomain (68418.m01221) 3802 Not regulated NC-NC-NC 250428_at At5g10480 protein tyrosine phosphatase-like protein, putative (PAS2) identical to PEPINO/PASTICCINO2 protein GI: 24411193, GI: 24575153 from [Arabidopsis thaliana]; contains Pfam: 04387: protein tyrosine phosphatase-like protein (68418.m01214) 3803 Not regulated NC-NC-NC 250430_at At5g10460 haloacid dehalogenase-like hydrolase family protein contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase (68418.m01212) 3804 Not regulated NC-NC-NC 250433_at At5g10400 histone H3 identical to several histone H3 proteins, including Zea mays SP|P05203, Medicago sativa GI: 166384, Encephatartos altensteinii SP|P08903, Pisum sativum SP|P02300; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 (68418.m01205) 3805 Not regulated NC-NC-NC 250434_at At5g10390 histone H3 identical to histone H3 from Zea mays SP|P05203, Medicago native GI: 166384, Encephalartos altensteinii SP|P08903, Pisum sativum SP|P02300; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 (68418.m01205) 3806 Not regulated NC-NC-NC 250435_at At5g10380 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68418.m01204) 3807 Not regulated NC-NC-NC 250436_at At5g10350 polyadenylate-binding protein family protein/PABP family protein contains weak similarity to poly(A) binding protein II from [Mus musculus] GI: 2351846, [Xenopus laevis] GI: 11527140; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68418.m01200) 3808 Not regulated NC-NC-NC 250438_at At5g10580 expressed protein contains Pfam profile PF04654: Protein of unknown function, DUF599 (68418.m01224) 3809 Not regulated NC-NC-NC 250440_at At5g10360 40S ribosomal protein S6 (RPS6B) (68418.m01202) 3810 Not regulated NC-NC-NC 250441_at At5g10540 peptidase M3 family protein/thimet oligopeptidase family protein similar to SP(P27237 Oligopeptidase A (EC 3.4.24.70) {Salmonella typhimurium}; contains Pfam profile PF01432: Peptidase family M3 (68418.m01220) 3811 Not regulated NC-NC-NC 250442_at At5g10490 mechanosensitive ion channel domain-containing protein/MS ion channel domain-containing protein contains Pfam profile PF00924: Mechanosensitive ion channel (68418.m01215) 3812 Not regulated NC-NC-NC 250448_at At5g10820 integral membrane transporter family protein contains 11 transmembrane domains; similar to folate/methotrexata transporter FT1 (GI: 5813863) {Leishmania donovani}; lignostilbene-alpha,beta-dioxygenase gene, Synechococcus PCC7942, EMBL: AF055873 (68418.m01257) 3813 Not regulated NC-NC-NC 250394_at At5g10910 mraW methylase family protein contains Pfam profile PF01795: MraW methylase family (68418.m01266) 3814 Not regulated NC-NC-NC 250400_at At5g10740 protein phosphatase 2C-related/PP2C-related protein phosphatase 2C, alfalfa, PIR: T09640 (68418.m01245) 3815 Not regulated NC-NC-NC 250401_at At5g10780 expressed protein HSPC184, Homo sapiens, EMBL: AF151018 (68418.m01253) 3816 Not regulated NC-NC-NC 250403_at At5g10920 argininosuccinate lyase, putative/arginosuccinase, putative similar to argininosuccinate lyase [Nostoc punctiforme] GI: 7872743; contains Pfam profile PF00206: Lyase (68418.m01267) 3817 Not regulated NC-NC-NC 250404_at At5g10960 CCR4-NOT transcription complex protein, putative similar to SWISS-PROT: Q9UFF9 CCR4-NOT transcription complex, subunit 8 (CAF1-like protein, CALIFp) [Homo sapiens] (68418.m01273) 3818 Not regulated NC-NC-NC 250406_at At5g10810 enhancer of rudimentary protein, putative identical to enhancer of rudimentary homolog SP: Q96319 from [Arabidopsis thaliana]; contains Pfam profile: PF01133 enhancer of rudimentary (68418.m01256) 3819 Not regulated NC-NC-NC 250409_at At5g10860 CBS domain-containing protein contains Pfam profile PF00571: CBS domain (68418.m01261) 3820 Not regulated NC-NC-NC 250413_at At5g11160 adenine phosphoribosyltransferase, putative strong similarity to SP|Q42563 Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT) {Arabidopsis thaliana}; contains Pfam profile PF00156: Phosphoribosyl transferase domain (68418.m01304) 3821 Not regulated NC-NC-NC 250390_at At5g11340 GCN5-related N-acetyltransferase (GNAT) family protein low similarity to SP|Q03503 L-A virus GAG protein N-acetyltransferase (EC 2.3.1.—) {Saccharomyces cerevisiae}; contains Pfam profile PF00583: acetyltransferase, GNAT family (68418.m01324) 3822 Not regulated NC-NC-NC 250368_at At5g11280 expressed protein (68418.m01317) 3823 Not regulated NC-NC-NC 250371_at At5g11450 oxygen-evolving complex-related 23 kDa polypeptide of water-oxidizing complex of photosystem II, Nicotiana tabacum, EMBL: NT23WOP2B (68418.m01337) 3824 Not regulated NC-NC-NC 250383_at At5g11480 expressed protein (68418.m01340) 3825 Not regulated NC-NC-NC 250384_at At5g11500 expressed protein contains Pfam profile PF05670: Domain of unknown function (DUF814) (68418.m01342) 3826 Not regulated NC-NC-NC 250352_at At5g11490 adaptin family protein similar to SP|Q9WV76 Adapter-related protein complex 4 beta 1 subunit (Beta subunit of AP-4) {Mus musculus}, beta-adaptin Drosophila 1 {Drosophila melanogaster} GI: 434902; contains Pfam profile: PF01602 Adaptin N terminal region (68418.m01341) 3827 Not regulated NC-NC-NC 250353_at At5g11630 expressed protein (68418.m01360) 3828 Not regulated NC-NC-NC 250355_at At5g11700 glycine-rich protein predicted protein, Arabidopsis thaliana (68418.m01367) 3829 Not regulated NC-NC-NC 250329_at At5g11800 K+ efflux antiporter, putative (KEA6) Monovalent cation:proton antiporter family 2 (CPA2 family) member, PMID: 11500563; similar to glutathione-regulated potassium-efflux system protein KEFB, Escherichia coli, SWISSPROT: P45522 (68418.m01377) 3830 Not regulated NC-NC-NC 250330_at At5g11810 expressed protein (68418.m01378) 3831 Not regulated NC-NC-NC 250333_at At5g11690 mitochondrial import inner membrane translocase subunit Tim17, putative similar to SP|Q9SP35 Mitochondrial import inner membrane translocase subunit TIM17 {Arabidopsis thaliana}; contains Pfam profile PF02466: Mitochondrial import inner membrane translocase subunit Tim17 (68418.m01366) 3832 Not regulated NC-NC-NC 250334_at At5g11770 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial identical to NADH-ubiquinone oxidoreductase 20 kDa subunit mitochondrial [precursor] SP: Q42577 from [Arabidopsis thaliana]; contains Pfam profile: PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit (68418.m01374) 3833 Not regulated NC-NC-NC 250338_at At5g11760 expressed protein (68418.m01373) 3834 Not regulated NC-NC-NC 250340_at At5g11840 expressed protein predicted proteins in Synechococcus, Cyanophora and other organisms (68418.m01384) 3835 Not regulated NC-NC-NC 250341_at At5g11850 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain; identical to cDNA MAP3K delta-1 protein kinase GI: 2253009 (68418.m01385) 3836 Not regulated NC-NC-NC 250347_at At5g11960 expressed protein (68418.m01399) 3837 Not regulated NC-NC-NC 250350_at At5g12010 expressed protein (68418.m01404) 3838 Not regulated NC-NC-NC 250326_at At5g12080 mechanosensitive ion channel domain-containing protein/MS ion channel domain-containing protein contains Pfam profile PF00924: Mechanosensitive ion channel (68418.m01414) 3839 Not regulated NC-NC-NC 250297_at At5g11980 conserved oligomeric Golgi complex component-related/COG complex component-related similar to SP|Q96MW5 Conserved oligomeric Golgi complex component 8 {Homo sapiens}; contains Pfam profile PF04124: Dor1-like family (68418.m01401) 3840 Not regulated NC-NC-NC 250298_at At5g11860 NLI interacting factor (NIF) family protein contains Pfam profile PF03031: NLI interacting factor (68418.m01386) 3841 Not regulated NC-NC-NC 250299_at At5g11910 esterase/lipase/thioesterase family protein low similarity to cinnamoyl ester hydrolase Cinl [Butyrivibrio fibrisolvens] GI: 1622732; contains interpro entry IPR000379 (68418.m01393) 3842 Not regulated NC-NC-NC 250301_at At5g11970 expressed protein (68418.m01400) 3843 Not regulated NC-NC-NC 250305_at At5g12150 pleckstrin homology (PH) domain-containing protein/RhoGAP domain-containing protein weak similarity to glucocorticoid receptor DNA binding factor 1 [Canis familiaris] GI: 23266717; contains Pfam profiles PF00169: PH domain, PF00620: RhoGAP domain (68418.m01426) 3844 Not regulated NC-NC-NC 250307_at At5g12170 expressed protein similar to unknown protein (pir|T09909) (68418.m01428) 3845 Not regulated NC-NC-NC 250315_at At5g12130 integral membrane TerC family protein contains Pfam profile PF03741: Integral membrane protein TerC family (68418.m01424) 3846 Not regulated NC-NC-NC 250318_at At5g12200 dihydropyrimidinase/DHPase/dihydropyrimidine amidohydrolase/hydantoinase (PYD2) identical to dihydropyrimidine amidohydrolase (PYD2) [Arabidopsis thaliana] GI: 28194047; similar to SP|Q9EQF5 Dihydropyrimidinase (EC 3.5.2.2) (DHPase) (Hydantoinase) (DHP) {Mus musculus}; contains Pfam profile PF01979: Amidohydrolase family (68418.m01431) 3847 Not regulated NC-NC-NC 250319_at At5g12120 ubiquitin-associated (UBA)/TS-N domain-containing protein contains Pfam profile PF00627: UBA/TS-N domain (68418.m01423) 3848 Not regulated NC-NC-NC 250320_at At5g12840 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein contains Pfam profile: PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B (68418.m01467) 3849 Not regulated NC-NC-NC 250323_at At5g12880 proline-rich family protein similar to hydroxyproline-rich glycoprotein gi|169345|gb|AAA33763 (68418.m01478) 3850 Not regulated NC-NC-NC 250273_at At5g13010 RNA helicase, putative similar to DEAH-box RNA helicase [Chlamydomonas reinhardtii] GI: 12044832; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain (68418.m01491) 3851 Not regulated NC-NC-NC 250278_at At5g12860 oxoglutarate/malate translocator, putative similar to 2-oxoglutarate/malate translocator precursor, spinach, SWISSPROT: Q41364 (68418.m01476) 3852 Not regulated NC-NC-NC 250282_at At5g13260 expressed protein (68418.m01523) 3853 Not regulated NC-NC-NC 250287_at At5g13330 AP2 domain-containing transcription factor family protein similar to AP2 domain containing protein RAP2.6, Arabidopsis thaliana, EMBL: AF003099; contains Pfam profile PF00847: AP2 domain (68418.m01533) 3854 Not regulated NC-NC-NC 250291_at At5g13280 aspartate kinase identical to aspartate kinase [Arabidopsis thaliana] GI: 4376158 (68418.m01525) 3855 Not regulated NC-NC-NC 250293_s_at At5g13360 auxin-responsive GH3 family protein similar to auxin-responsive GH3 product [Glycine max] GI: 18591; contains Pfam profile PF03321: GH3 auxin-responsive promoter (68418.m01539) 3856 Not regulated NC-NC-NC 250261_at At5g13400 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family (68418.m01543) 3857 Not regulated NC-NC-NC 250262_at At5g13410 immunophilin/FKBP-type peptidyl-prolyl cis-trans isomerase family protein SP: Q9LYR5; similar to FK506-binding protein (Peptidyl- prolyl cis-trans isomerase) (PPiase) (Rotamase) (SP: P25138) [{Neisseria meningitidis]; peptidyl-prolyl cis-trans isomerase, Spodoptera frugiperda, EMBL: SF15038; contains Pfam PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type (68418.m01544) 3858 Not regulated NC-NC-NC 250234_at At5g13420 transaldolase, putative similar to transaldolase [Solanum tuberosum] gi|2078350|gb|AAB54016 (68418.m01545) 3859 Not regulated NC-NC-NC 250235_s_at At5g13430 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative/Rieske iron-sulfur protein, putative similar to ubiquinol--cytochrome-c reductase from Solanum tuberosum [SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133]; non- consensus AT acceptor splice site at exon 2 (68418.m01546) 3860 Not regulated NC-NC-NC 250236_at At5g13450 ATP synthase delta chain, mitochondrial, putative/H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative identical to SP|Q96251; similar to SP|P22778 ATP synthase delta chain, mitochondrial precursor (EC 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP) {Ipomoea batatas}; contains Pfam profile PF00213: ATP synthase F1, delta subunit (68418.m01548) 3861 Not regulated NC-NC-NC 250237_at At5g13560 expressed protein weak similarity to SP|O42184 Restin (Cytoplasmic linker protein-170) (CLIP-170) {Gallus gallus} (68418.m01566) 3862 Not regulated NC-NC-NC 250247_at At5g13720 expressed protein (68418.m01597) 3863 Not regulated NC-NC-NC 250254_at At5g13710 sterol 24-C-methyltransferase, putative similar to SP: P25087 Sterol 24-C-methyltransferase, Delta(24)-sterol C-methyltransferase, Saccharomyces cerevisiae (68418.m01596) 3864 Not regulated NC-NC-NC 250256_at At5g13650 elongation factor family protein contains Pfam profiles: PF00009 elongation factor Tu GTP binding domain, PF00679 elongation factor G C-terminus, PF03144 elongation factor Tu domain 2 (68418.m01584) 3865 Not regulated NC-NC-NC 250257_at At5g13770 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat (68418.m01606) 3866 Not regulated NC-NC-NC 250228_at At5g13780 GCN5-related N-acetyltransferase, putative similar to SP|P07347 N-terminal acetyltransferase complex ARD1 subunit (Arrest- defective protein 1) {Saccharomyces cerevisiae}; contains Pfam profile PF00583: acetyltransferase, GNAT family (68418.m01607) 3867 Not regulated NC-NC-NC 250229_at At5g13850 nascent polypeptide-associated complex (NAC) domain-containing protein similar to alpha-NAC, non-muscle form [Mus musculus] GI: 1666690; contains Pfam profile PF01849: NAC domain (68418.m01619) 3868 Not regulated NC-NC-NC 250231_at At5g13910 AP2/EREBP-like transcription factor LEAFY PETIOLE, putative nearly identical to AP2/EREBP-like transcription factor LEAFY PETIOLE [Arabidopsis thaliana] GI: 6942018 (68418.m01627) 3869 Not regulated NC-NC-NC 250202_at At5g13970 expressed protein (68418.m01633) 3870 Not regulated NC-NC-NC 250203_at At5g13980 glycosyl hydrolase family 38 protein similar to alpha-mannosidase GI: 1419374 from [Homo sapiens] (68418.m01634) 3871 Not regulated NC-NC-NC 250209_at At5g14030 translocon-associated protein beta (TRAPB) family protein low similarity to SP|P23438 Translocon-associated protein, beta subunit precursor (TRAP-beta) (Signal sequence receptor beta subunit) {Canis familiaris}; contains Pfam profile PF05753: Translocon- associated protein beta (TRAPB) (68418.m01640) 3872 Not regulated NC-NC-NC 250210_at At5g13890 expressed protein contains Pfam profile PF04819: Family of unknown function (DUF716) (Plant viral-response family) (68418.m01623) 3873 Not regulated NC-NC-NC 250216_at At5g14090 hypothetical protein (68418.m01648) 3874 Not regulated NC-NC-NC 250218_at At5g14170 SWIB complex BAF60b domain-containing protein similar to brahma associated protein 60 kDa [Drosophila melanogaster] GI: 3378134, SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin D1 [Homo sapiens] GI: 4566530; contains Pfam profile PF02201: BAF60b domain of the SWIB complex (68418.m01657) 3875 Not regulated NC-NC-NC 250220_at At5g14210 leucine-rich repeat transmembrane protein kinase, putative (68418.m01660) 3876 Not regulated NC-NC-NC 250221_at At5g14220 protoporphyrinogen oxidase, putative similar to protoporphyrinogen IX oxidase, mitochondrial (PPO II) from Nicotiana tabacum [SP|O24164], Glycine max, AB025102, Spinacia oleracea [GI: 14349153]; contains Pfam amine oxidase, flavin-containing domain [PF015930] (68418.m01661) 3877 Not regulated NC-NC-NC 250222_at At5g14050 transducin family protein/WD-40 repeat family protein contains 4 WD-40 repeats (PF00400); similar to unknown protein (ref|NP_057085.1) (68418.m01644) 3878 Not regulated NC-NC-NC 250225_at At5g14105 expressed protein (68418.m01650) 3879 Not regulated NC-NC-NC 250200_at At5g14130 peroxidase, putative identical to peroxidase ATP20a [Arabidopsis thaliana] gi|1546694|emb|CAA67338 (68416.m01653) 3880 Not regulated NC-NC-NC 250172_at At5g14330 expressed protein (68418.m01675) 3881 Not regulated NC-NC-NC 250177_at At5g14420 copine-related low similarity to SP|Q99829 Copine I {Homo sapiens} (68418.m01684) 3882 Not regulated NC-NC-NC 250179_at At5g14440 surfeit locus 2 protein-related/SURF2 protein-related contains weak hit to Pfam profile PF05477: Surfeit locus protein 2 (SURF2) (68418.m01690) 3883 Not regulated NC-NC-NC 250181_at At5g14460 pseudouridylate synthase TruB family protein similar to SP|P09171 tRNA pseudouridine synthase B (EC 4.2.1.70) (tRNA pseudouridine 5S synthase) (Pseudouridylate synthase) (Uracil hydrolyase) {Escherichia coli O157:H7}; contains Pfam profile PF01509: TruB family pseudouridylate synthase (N terminal domain) (68418.m01692) 3884 Not regulated NC-NC-NC 250184_at At5g14240 expressed protein (68418.m01664) 3885 Not regulated NC-NC-NC 250188_at At5g14250 COP9 signalosome complex subunit 3/CSN complex subunit 3 (CSN3)/FUSCA protein (FUS11) CSN3, FUS11; identical to COP9 signalosome subunit 3 GI: 14388969 [Arabidopsis thaliana]; identical to cDNA CSN complex subunit 3 (CSN3) GI: 18056656; contains pfam profile PF01399: PCI domain (68418.m01665) 3886 Not regulated NC-NC-NC 250190_at At5g14320 30S ribosomal protein S13, chloroplast (CS13) ribosomal protein S13 precursor, chloroplast Arabidopsis thaliana, PIR: S59594; identical to cDNA ribosomal protein S13 GI: 1515106 (68418.m01674) 3887 Not regulated NC-NC-NC 250197_at At5g14590 isocitrate dehydrogenase, putative/NADP+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase (NADP+) [Nicotiana tabacum] GI: 3021512; contains Pfam domain PF00180: dehydrogenase, isocitrate/isopropylmalate family (68418.m01711) 3888 Not regulated NC-NC-NC 250141_at At5g14640 protein kinase family protein similar to glycogen synthase kinase-3 homolog MsK-3 SP: P51139 from [Medicago sativa]; contains Pfam profile PF00069: Protein kinase domain (68418.m01715) 3889 Not regulated NC-NC-NC 250144_at At5g14680 universal stress protein (USP) family protein similar to ER6 protein [Lycopersicon esculentum] GI: 5669654; contains Pfam profile PF00582: universal stress protein family (68418.m01720) 3890 Not regulated NC-NC-NC 250146_at At5g14660 peptide deformylase, chloroplast/polypeptide deformylase 1B (PDF1B) identical to SP|Q9FUZ2 Peptide deformylase, chloroplast precursor (EC 3.5.1.88) (PDF) (Polypeptide deformylase) {Arabidopsis thaliana}; supporting cDNA gi|11320965|gb|AF269165.1|AF269165 (68418.m01717) 3891 Not regulated NC-NC-NC 250150_at At5g14710 expressed protein (68418.m01725) 3892 Not regulated NC-NC-NC 250151_at At5g14570 transporter, putative similar to trans-membrane nitrate transporter protein AtNRT2: 1 [Arabidopsis thaliana] GI: 3747058, high-affinity nitrate transporter ACH1 [Arabidopsis thaliana] GI: 3608362; contains Pfam profile PF00083: Sugar (and other) transporter (68418.m01708) 3893 Not regulated NC-NC-NC 250159_at At5g15200 40S ribosomal protein S9 (RPS9B) 40S ribosomal protein S9, Chlamydomonas sp., EMBL: AU066528 (68418.m01781) 3894 Not regulated NC-NC-NC 250167_at At5g15310 myb family transcription factor contains PFAM profile: myb DNA-binding domain PF00249 (68418.m01793) 3895 Not regulated NC-NC-NC 250168_at At5g15320 expressed protein predicted protein, Arabidopsis thaliana (68418.m01794) 3896 Not regulated NC-NC-NC 250137_at At5g15390 tRNA/rRNA methyltransferase (SpoU) family protein similar to SP|P19396 tRNA (Guanosine-2′-O-)methyltransferase (EC 2.1.1.34) {Escherichia coli O157:H7}; contains Pfam profile PF00588: SpoU rRNA Methylase (RNA methyltransferase, TrmH) family (68418.m01800) 3897 Not regulated NC-NC-NC 250111_at At5g16290 acetolactate synthase small subunit putative similar to gi: 5931761 from Nicotiana plumbaginitolia (68418.m01903) 3898 Not regulated NC-NC-NC 250112_at At5g16300 expressed protein (68418.m01905) 3899 Not regulated NC-NC-NC 250125_at At5g16390 biotin carboxyl carrier protein 1 (BCCP1) identical to biotin carboxyl carrier protein of acetyl-CoA carboxylase precursor [Arabidopsis thaliana] gi|9759121|dbj|BAB09606 (68418.m01915) 3900 Not regulated NC-NC-NC 250129_at At5g16450 dimethylmenaquinone methyltransferase family protein similar to bacterial S-adenosylmethionine:2-demethylmenaquinone methyltransferases; contains pfam profile PF03737: Dimethylmenaquinone methyltransferase (68418.m01922) 3901 Not regulated NC-NC-NC 250130_at At5g16510 reversibly glycosylated polypeptide, putative similar to reversibly glycosylatable polypeptide (RGP1) [Pisum sativum] GI: 2130521; contains Pfam profile PF03214: Reversibly glycosylated polypeptide (68418.m01930) 3902 Not regulated NC-NC-NC 250131_at At5g16550 expressed protein (68418.m01937) 3903 Not regulated NC-NC-NC 250133_at At5g16400 thioredoxin, putative similar to SP|P29450 Thioredoxin F-type, chloroplast precursor (TRX-F) {Pisum sativum}; contains Pfam profile: PF00085 Thioredoxin (68418.m01917) 3904 Not regulated NC-NC-NC 250134_at At5g16505 3905 Not regulated NC-NC-NC 250076_at At5g16660 expressed protein (68418.m01950) 3906 Not regulated NC-NC-NC 250077_at At5g16680 PHD finger family protein contains Pfam domain, PF00628: PHD-finger (68418.m01951) 3907 Not regulated NC-NC-NC 250079_at At5g16650 DNAJ heat shock N-terminal domain-containing protein similar to SP|P30725 Chaperone protein dnaJ Clostridium acetobutylicum; contains pfam profile PF00226: DnaJ domain (68418.m01949) 3908 Not regulated NC-NC-NC 250080_at At5g16620 hydroxyproline-rich glycoprotein family protein contains proline rich extensin domains, INTERPRO: IPR002965 (68418.m01946) 3909 Not regulated NC-NC-NC 250088_at At5g17290 autophagy protein Apg5 family contains Pfam profile: PF04106 autophagy protein Apg5 (68418.m02025) 3910 Not regulated NC-NC-NC 250090_at At5g17330 glutamate decarboxylase 1 (GAD 1) sp|Q42521 (68418.m02030) 3911 Not regulated NC-NC-NC 250096_at At5g17190 expressed protein similar to unknown protein (gb|AAF26109.1) (68418.m02014) 3912 Not regulated NC-NC-NC 250097_at At5g17280 expressed protein similar to unknown protein (pir||T41692) (68418.m02024) 3913 Not regulated NC-NC-NC 250073_at At5g17170 rubredoxin family protein contains pfam profile PF00301: Rubredoxin (68418.m02012) 3914 Not regulated NC-NC-NC 250074_at At5g17310 UTP-glucose-1-phosphate uridylyltransferase, putative/UDP-glucose pyrophosphorylase, putative/UGPase, putative strong similarity to SP|P19595 UTP-glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) }Solanum tuberosum}; contains Pfam profile PF01704: UTP-glucose-1-phosphate uridylyltransferase (68418.m02027) 3915 Not regulated NC-NC-NC 250075_at At5g17670 expressed protein (68418.m02071) 3916 Not regulated NC-NC-NC 250057_at At5g17840 chaperone protein dnaJ-related similar to bundle sheath defective protein 2 (GI: 4732091) [Zea mays] (68418.m02091) 3917 Not regulated NC-NC-NC 250016_at At5g18100 superoxide dismutase [Cu—Zn]/copper/zinc superoxide dismutase (CSD3) identical to copper/zinc superoxide dismutase GI: 3273755 (68418.m02125) 3918 Not regulated NC-NC-NC 250017_at At5g18140 DNAJ heat shock N-temtinal domain-containing protein similar to DnaJ protein Tid-1 [Homo sapiens] GI: 17066575; contains Pfam profile PF00226 DnaJ domain (68418.m02130) 3919 Not regulated NC-NC-NC 250018_at At5g18150 expressed protein similar to unknown protein (emb|CAB87627.1) (68418.m02131) 3920 Not regulated NC-NC-NC 250021_at At5g18190 protein kinase family protein contains Pfam domains, PF00069: Protein kinase domain (68418.m02135) 3921 Not regulated NC-NC-NC 250027_at At5g18250 expressed protein similar to unknown protein (dbj|BAA90342.1) (68418.m02145) 3922 Not regulated NC-NC-NC 250028_at At5g18130 expressed protein similar to unknown protein (gb|AAF00631.1) (68418.m02128) 3923 Not regulated NC-NC-NC 250034_at At5g18280 apyrase (APY2) identical to apyrase GI: 6006801, GI: 7672685 from [Arabidopsis thaliana] (68418.m02149) 3924 Not regulated NC-NC-NC 250035_at At5g18230 transcription regulator NOT2/NOT3/NOT5 family protein contains Pfam domain PF04153: NOT2/NOT3/NOT5 family (68418.m02139) 3925 Not regulated NC-NC-NC 250042_at At5g18420 expressed protein non-consensus GC donor splice site at exon 1, unknown (C40) protein, Homo sapiens, EMBL: AF103798 (68418.m02168) 3926 Not regulated NC-NC-NC 249982_at At5g18520 expressed protein (68418.m02187) 3927 Not regulated NC-NC-NC 249984_at At5g18400 expressed protein contains Pfam profile PF05093: Protein of unknown function (DUF689) (68418.m02164) 3928 Not regulated NC-NC-NC 250001_at At5g18680 F-box family protein/tubby family protein similar to phosphodiesterase (GI: 467578) [Mus musculus]; similar to Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein (GI: 6730158) [Mus musculus]; contains Pfam PF00646: F-box domain and Pfam PF01167: Tub family (68418.m02217) 3929 Not regulated NC-NC-NC 250005_at At5g18760 zinc finger (C3HC4-type RING finger) family protein predicted proteins, Arabidopsis thaliana; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) (68418.m02228) 3930 Not regulated NC-NC-NC 250007_at At5g18670 beta-amylase, putative (BMY3)/1,4-alpha-D-glucan maltohydrolase, putative almost identical to beta-amylase BMY3 GI: 15149457 from [Arabidopsis thaliana]; identical to cDNA putative beta-amylase BMY3 (BMY3) GI: 15149456 (68418.m02216) 3931 Not regulated NC-NC-NC 250008_at At5g18630 lipase class 3 family protein low similarity to Triacylglycerol Acylhydrolase (E.C.3.1.1.3) [Rhizomucor miehei] GI: 230348; contains Pfam profile PF01764: Lipase (68418.m02208) 3932 Not regulated NC-NC-NC 249975_s_at At5g18790 ribosomal protein L33 family protein ribosomal protein L33, Rickettsia prowazekii, PIR: E71650 (68418.m02232) 3933 Not regulated NC-NC-NC 249956_at At5g18940 Mo25 family protein similar to SP|Q06138 MO25 protein {Mus musculus}; contains Pfam profile PF03204: Mo25 protein family (68418.m02249) 3934 Not regulated NC-NC-NC 249957_at At5g18900 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to prolyl 4-hydroxylase, alpha subunit, from Rattus norvegicus [GI: 474940], Mus musculus [SP|Q60715], Homo sapiens [GI: 18073925]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain (68418.m02245) 3935 Not regulated NC-NC-NC 249959_at At5g18800 NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein contains Pfam profile: PF05850 NADH-ubiquinone oxidoreductase 19 kDa subunit (68418.m02233) 3936 Not regulated NC-NC-NC 249960_at At5g18830 squamosa promoter-binding protein-like 7 (SPL7) identical to squamosa promoter binding protein-like 7 [Arabidopsis thaliana] GI: 5931635; contains Pfam profile PF03110: SBP domain (68418.m02237) 3937 Not regulated NC-NC-NC 249963_at At5g19000 speckle-type POZ protein-related contains Pfam PF00651: BTB/POZ domain; contains Pfam PF00917: MATH domain; similar to Speckle-type POZ protein (SP|O43791) [Homo sapiens] (68418.m02257) 3938 Not regulated NC-NC-NC 249964_at At5g19010 mitogen-activated protein kinase, putative/MAPK, putative (MPK16) mitogen-activated protein kinase (MAPK)(AtMPK16), PMID: 12119167; similar to ATMPK9, Arabidopsis thaliana, EMBL: AB038694 (68416.m02258) 3939 Not regulated NC-NC-NC 249968_at At5g19070 expressed protein (68418.m02267) 3940 Not regulated NC-NC-NC 249969_at At5g19090 heavy-metal-associated domain-containing protein contains Pfam heavy-metal-associated domain PF00403; glycine-rich protein GRP22, rape, PIR: S31415; isoform contains a non-consensus TG-acceptor splice site at intron 3 (68418.m02269) 3941 Not regulated NC-NC-NC 249919_at At5g19250 expressed protein (68418.m02292) 3942 Not regulated NC-NC-NC 249927_at At5g19220 glucose-1-phosphate adenylyltransferase large subunit 1 (APL1)/ADP-glucose pyrophosphorylase (ADG2) identical to SP|P55229 (68418.m02289) 3943 Not regulated NC-NC-NC 249929_at At5g22340 expressed protein (68418.m02606) 3944 Not regulated NC-NC-NC 249930_at At5g22360 synaptobrevin family protein similar to Synaptobrevin-like protein 1 (SP: P51809) [Homo sapiens] (68418.m02609) 3945 Not regulated NC-NC-NC 249938_at At5g22330 TATA box-binding protein-interacting protein-related similar to TATA box-binding protein-interacting protein SP: O35753 from [Mus musculus] (68418.m02605) 3946 Not regulated NC-NC-NC 249942_at At5g22300 nitrilase 4 (NIT4) identical to SP|P46011 Nitrilase 4 (EC 3.5.5.1) {Arabidopsis thaliana} (68418.m02601) 3947 Not regulated NC-NC-NC 249943_at At5g22280 expressed protein (68418.m02597) 3948 Not regulated NC-NC-NC 249945_at At5g22440 60S ribosomal protein L10A (RPL10aC) (68418.m02617) 3949 Not regulated NC-NC-NC 249894_at At5g22580 expressed protein (68418.m02637) 3950 Not regulated NC-NC-NC 249895_at At5g22500 acyl CoA reductase, putative/male-sterility protein, putative similar to acyl CoA reductase [Simmondsia chinensis] GI: 5020215; contains Pfam profile PF03015: Male sterility protein; identical to cDNA male sterility 2-like protein GI: 1491614 (68418.m02626) 3951 Not regulated NC-NC-NC 249898_at At5g22510 beta-fructofuranosidase, putative/invertase, putative/saccharase, putative/beta-fructosidase, putative similar to neutral invertase [Daucus carota] GI: 4200165; contains Pfam profile PF04853: Plant neutral invertase (68418.m02627) 3952 Not regulated NC-NC-NC 249900_at At5g22640 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein contains Pfam profile PF02493: MORN repeat (68418.m02645) 3953 Not regulated NC-NC-NC 249909_s_at At5g22770 adaptin family protein similar to SP|18484 adaptor-related protein complex 2 alpha 2 subunit (Alpha-adaptin C) (Clathrin assembly protein complex 2 alpha-C large chain) {Rattus norvegicus}; contains Pfam profiles PF01602 Adaptin N terminal region, PF02883 Adaptin C-terminal domain (68418.m02659) 3954 Not regulated NC-NC-NC 249910_at At5g22630 prephenate dehydratase family protein contains Pfam profile PF00800: prephenate dehydratase (68418.m02644) 3955 Not regulated NC-NC-NC 249916_at At5g22880 histone H2B, putative strong similarity to histone H2B-3 Lycopersicon esculentum GI: 3021485, H2B Gossypium hirsutum SP|O22582; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 (68418.m02676) 3956 Not regulated NC-NC-NC 249859_at At5g22840 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68418.m02670) 3957 Not regulated NC-NC-NC 249861_at At5g22875 expressed protein (68418.m02675) 3958 Not regulated NC-NC-NC 249863_at At5g22950 SNF7 family protein contains Pfam domain, PF03357: SNF7 family (68418.m02683) 3959 Not regulated NC-NC-NC 249864_at At5g22830 magnesium transporter CorA-like family protein weak similarity to SP|Q01926 RNA splicing protein MRS2, mitochondrial precursor {Saccharomyces cerevisiae}; contains Pfam profile PF01544: CorA-like Mg2+ transporter protein; supporting cDNA gi|12007446|gb|AF322255.1|AF322255 (68418.m02669) 3960 Not regulated NC-NC-NC 249873_at At5g23140 ATP-dependent Clp protease proteolytic subunit, putative nClpP2/nClpP7; similar to SP: Q9X6W8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) from [Azospirillum brasilense] (68416.m02706) 3961 Not regulated NC-NC-NC 249874_at At5g23070 thymidine kinase, putative similar to thymidine kinase [Oryza sativa] SWISS-PROT: O81263 (68418.m02697) 3962 Not regulated NC-NC-NC 249875_at At5g23120 photosystem II stability/assembly factor, chloroplast (HCF136) identical to SP|O82660 Photosystem II stability/assembly factor HCF136, chloroplast precursor {Arabidopsis thaliana} (68418.m02704) 3963 Not regulated NC-NC-NC 249847_at At5g23210 serine carboxypeptidase S10 family protein similar to Serine carboxypeptidase II chains A and B (SP: P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)]; (68418.m02714) 3964 Not regulated NC-NC-NC 249834_at At5g23440 ferredoxin-thioredoxin reductase, putative similar to ferredoxin-thioredoxin reductase, variable chain (FTR-V, Ferredoxin- thioredoxin reductase subunit A, FTR-A) [Zea mays] SWISS-PROT: P80680 (68418.m02750) 3965 Not regulated NC-NC-NC 249835_s_at At5g23510 expressed protein (68418.m02758) 3966 Not regulated NC-NC-NC 249842_at At5g23550 expressed protein (68418.m02764) 3967 Not regulated NC-NC-NC 249846_at At5g23630 ATPase E1-E2 type family protein/haloacid dehalogenase-like hydrolase family protein similar to SP|O14072 Cation-transporting ATPase 4 (EC 3.6.3.—) {Schizosaccharomyces pombe}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00702: haloacid dehalogenase-like hydrolase (68418.m02771) 3968 Not regulated NC-NC-NC 249795_at At5g23740 40S ribosomal protein S11 (RPS11C) (68418.m02784) 3969 Not regulated NC-NC-NC 249796_at At5g23540 26S proteasome regulatory subunit, putative similar to 26S proteasome-associated pad1 homolog [Homo sapiens] GI: 1923256, 26S proteasome, non-ATPase subunit [Mus musculus] GI: 2505940; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family (68418.m02763) 3970 Not regulated NC-NC-NC 249798_at At5g23730 transducin family protein/WD-40 repeat family protein contains similarity to photomorphogenesis repressor protein; contains pfam PF00400: WD domain, G-beta repeat (5 copies) (68418.m02782) 3971 Not regulated NC-NC-NC 249799_at At5g23670 serine C-palmitoyltransferase (LCB2) identical to serine palmitoyltransferase [Arabidopsis thaliana] GI: 9309380; similar to serine palmitoyltransferase from Solanum tuberosum [GI: 4995890], Homo sapiens [SP|O15270], Mus musculus [SP|P97363]; contains Pfam profile PF00155: aminotransferase, classes I and II (68418.m02775) 3972 Not regulated NC-NC-NC 249810_at At5g23920 expressed protein (68418.m02809) 3973 Not regulated NC-NC-NC 249815_at At5g23900 60S ribosomal protein L13 (RPL13D) (68418.m02807) 3974 Not regulated NC-NC-NC 249765_at At5g24030 C4-dicarboxylate transporter/malic acid transport family protein weak similarity to SP|P25396 Tellurite resistance protein tehA. {Escherichia coli}; contains Pfam profile PF03595: C4-dicarboxylate transporter/malic acid transport protein (68418.m02823) 3975 Not regulated NC-NC-NC 249775_at At5g24160 squalene monooxygenase 1,2/squalene epoxidase 1,2 (SQP1,2) identical to SP|O65402 (68418.m02842) 3976 Not regulated NC-NC-NC 249776_at At5g24170 expressed protein (68418.m02844) 3977 Not regulated NC-NC-NC 249778_at At5g24165 expressed protein (68418.m02843) 3978 Not regulated NC-NC-NC 249790_at At5g24290 integral membrane family protein contains Pfam domain PF01988: Integral membrane protein (68418.m02857) 3979 Not regulated NC-NC-NC 249733_at At5g24400 glucosamine/galactosamine-6-phosphate isomerase family protein low similarity to SP|O95336 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) {Homo sapiens}; contains Pfam profile PF01182: Glucosamine-6-phosphate isomerase/6- phosphogluconolactonase (68418.m02876) 3980 Not regulated NC-NC-NC 249735_at At5g24450 transcription factor-related low similarity to transcription factor IIIC63 [Homo sapiens] GI: 5281316 (68418.m02882) 3981 Not regulated NC-NC-NC 249736_at At5g24460 expressed protein (68418.m02883) 3982 Not regulated NC-NC-NC 249739_at At5g24520 transparent testa glabra 1 protein (TTG1) identical to transparent testa glabra 1 (Ttg1) protein (GI: 10177852) {Arabidopsis thaliana}; contains Pfam PF00400: WD domain, G-beta repeat (4 copies, 1 weak); (68418.m02891) 3983 Not regulated NC-NC-NC 249746_at At5g24590 turnip crinkle virus-interacting protein/TCV-interacting protein (TIP) contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC2 (GI: 6456751) {Arabidopsis thaliana}; identical to cDNA TIP mRNA, GI: 9408800 (68418.m02904) 3984 Not regulated NC-NC-NC 249750_at At5g24570 expressed protein (68418.m02901) 3985 Not regulated NC-NC-NC 249751_at At5g24650 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein contains Pfam PF02466: Mitochondrial import inner membrane translocase subunit Tim17 (68418.m02911) 3986 Not regulated NC-NC-NC 249753_at At5g24610 expressed protein similar to unknown protein (emb|CAB62459.1) (68418.m02907) 3987 Not regulated NC-NC-NC 249754_at At5g24530 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to flavanone 3-hydroxylase [Persea americana][GI: 727410]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain (68418.m02897) 3988 Not regulated NC-NC-NC 249723_at At5g35440 3989 Not regulated NC-NC-NC 249700_at At5g35530 40S ribosomal protein S3 (RPS3C) (68418.m04226) 3990 Not regulated NC-NC-NC 249701_at At5g35460 expressed protein (68418.m04217) 3991 Not regulated NC-NC-NC 249703_at At5g35560 DENN (AEX-3) domain-containing protein contains Pfam domain PF02141: DENN (AEX-3) domain; this cDNA may contain an anomalously spliced intron . . . will require further examination. (68418.m04231) 3992 Not regulated NC-NC-NC 249710_at At5g35630 glutamine synthetase (GS2) identical to glutamine synthetase, chloroplast precursor (glutamate-ammonia ligase, GS2) [Arabidopsis thaliana] SWISS-PROT: Q43127 (68418.m04253) 3993 Not regulated NC-NC-NC 249711_at At5g35680 eukaryotic translation initiation factor 1A, putative/eIF-1A, putative/eIF-4C, putative strong similarity to translation initiation factor (eIF-1A) [Beta vulgaris] GI: 17977975: contains Pfam profile PF01176: Eukaryotic initiation factor 1A (68418.m04263) 3994 Not regulated NC-NC-NC 249717_at At5g35730 EXS family protein/ERD1/XPR1/SYG1 family protein low similarity to xenotropic and polytropic murine leukemia virus receptor [Mus spretus] GI: 6093318; contains Pfam profile PF03124: EXS family (68418.m04274) 3995 Not regulated NC-NC-NC 249694_at At5g35790 glucose-6-phosphate 1-dehydrogenase/G6PD (APG1) identical to SP|Q43727 Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform (EC 1.1.1.49) (G6PD) {Arabidopsis thaliana} (68418.m04292) 3996 Not regulated NC-NC-NC 249674_at At5g35930 AMP-dependent synthetase and ligase family protein similar to iturin A synthetase C [Bacillus subtilis] GI: 16040972; contains Pfam profile PF00501: AMP-binding enzyme (68418.m04322) 3997 Not regulated NC-NC-NC 249676_at At5g35980 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68418.m04333) 3998 Not regulated NC-NC-NC 249679_at At5g35990 3999 Not regulated NC-NC-NC 249685_at At5g36120 YGGT family protein contains Pfam profile PF02325: YGGT family (unknown function) (68418.m04352) 4000 Not regulated NC-NC-NC 249688_at At5g36160 aminotransferase-related similar to nicotianamine aminotransferase B GI: 6469087 from [Hordeum vulgare subsp. vulgare] (68418.m04357) 4001 Not regulated NC-NC-NC 249691_at At5g36170 peptide chain release factor, putative similar to SP|P28367 Peptide chain release factor 2 (RF-2) {Bacillus subtilis}; contains Pfam profiles PF00472; Peptidyl-tRNA hydrolase domain, PF03462: PCRF domain (68418.m04358) 4002 Not regulated NC-NC-NC 249658_s_at At5g36700 phosphoglycolate phosphatase, putative similar to phosphoglycolate phosphatase precursor [Chlamydomonas reinhardtii] GI: 15982558; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase (68418.m04392) 4003 Not regulated NC-NC-NC 249638_at At5g36890 glycosyl hydrolase family 1 protein pcontains Pfam PF00232: Glycosyl hydrolase family 1 domain; similar to amygdalin hydrolase isoform AH I precursor (GI: 16757966) [Prunus serotina]; prunasin hydrolase isoform PHA precursor, Prunus serotina, EMBL: AF221526 (68418.m04419) 4004 Not regulated NC-NC-NC 249638_at At5g36880 acetyl-CoA synthetase, putative/acetate-CoA ligase, putative similar to SP|P27550 (Escherichia coli) and gi: 8439651 (Homo sapiens); contains Pfam AMP-binding enzyme domain PF00501 (68418.m04418) 4005 Not regulated NC-NC-NC 249651_at At5g37020 auxin-responsive factor (ARF8) identical to auxin response factor 8 GI: 4104931 from [Arabidopsis thaliana] (68418.m04440) 4006 Not regulated NC-NC-NC 249852_at At5g37070 expressed protein contains Pfam profile PF04398: Protein of unknown function. DUF538 (68418.m04450) 4007 Not regulated NC-NC-NC 249610_at At5g37360 expressed protein (68418.m04488) 4008 Not regulated NC-NC-NC 249611_at At5g37370 pre-mRNA splicing factor PRP38 family protein (SRL1) contains Pfam profile PF03371: PRP38 family (68418.m04489) 4009 Not regulated NC-NC-NC 249576_at At5g37690 GDSL-motif lipase/hydrolase family protein similar to family II lipase EXL3 (GI: 15054386), EXL1 (GI: 15054382), EXL2 (GI: 15054384) [Arabidopsis thaliana] (68418.m04539) 4010 Not regulated NC-NC-NC 249583_at At5g37770 touch-responsive protein/calmodulin-related protein 2, touch-induced (TCH2) identical to calmodulin-related protein 2, touch- induced SP: P25070 from [Arabidopsis thaliana] (68418.m04547) 4011 Not regulated NC-NC-NC 249589_at At5g37850 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase (68418.m04557) 4012 Not regulated NC-NC-NC 249595_at At5g37930 seven in absentia (SINA) family protein similar to SIAH1 protein [Brassica napus var. napus] GI: 7657876; contains Pfam profile PF03145: Seven in absentia protein family (68418.m04569) 4013 Not regulated NC-NC-NC 249562_at At5g38350 disease resistance protein (NBS-LRR class), putative domain signature NBS-LRR exists, suggestive of a disease resistance protein. (68418.m04628) 4014 Not regulated NC-NC-NC 249508_at At5g38380 expressed protein (68418.m04635) 4015 Not regulated NC-NC-NC 249510_at At5g38510 rhomboid family protein contains Pfam profile PF01694: Rhomboid family (68418.m04656) 4016 Not regulated NC-NC-NC 249512_at At5g38470 DNA repair protein RAD23, putative similar to DNA repair by nucleotide excision (NER) RAD23 protein, isoform I GI: 1914683 from [Daucus carota] (68418.m04650) 4017 Not regulated NC-NC-NC 249515_at At5g38530 tryptophan synthase-related low similarity to tryptophan synthases, beta subunit, from Lactococcus lactis [SP|Q01998], Pyrococcus kodakaraensis [SP|Q9YGB0], Thermus thermophilus [SP|P16609]; contains Pfam pyridoxal-phosphate dependent enzyme domain PF00291 (68418.m04659) 4018 Not regulated NC-NC-NC 249519_at At5g38660 expressed protein similar to unknown protein (pir||S75762) (68418.m04675) 4019 Not regulated NC-NC-NC 249523_at At5g38630 cytochrome B561 family protein contains Pfam domain, PF03188: Cytochrome b561 (68418.m04672) 4020 Not regulated NC-NC-NC 249524_at At5g38520 hydrolase, alpha/beta fold family protein low similarity to hydrolase [Terrabacter sp. DBF63] GI: 14196240; contains Pfam profile PF00581: hydrolase, alpha/beta fold family (68418.m04658) 4021 Not regulated NC-NC-NC 249525_at At5g38650 proteasome maturation factor UMP1 family protein contains Pfam profile PF05348: Proteasome maturation factor UMP1 (68418.m04674) 4022 Not regulated NC-NC-NC 249537_at At5g38830 tRNA synthetase class I (C) family protein similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine-tRNA ligase) (CysRS) {Bacillus subtilis}; contains Pfam profile PF01406: tRNA synthetases class I (C) (68418.m04897) 4023 Not regulated NC-NC-NC 249475_at At5g38890 exoribonuclease-related similar to SP|P53859 3′-5′ exoribonuclease CSL4 (EC 3.1.13.—) {Saccharomyces cerevisiae} (68418.m04703) 4024 Not regulated NC-NC-NC 249480_s_at At5g38990 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68418.m04717) 4025 Not regulated NC-NC-NC 249481_at At5g38900 DSBA oxidoreduclase family protein contains Pfam profile: PF01323 DSBA-like thioredoxin domain (68418.m04705) 4026 Not regulated NC-NC-NC 249469_at At5g39320 UDP-glucose 6-dehydrogenase, putative very strong similarity to SP|Q96558 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP- Glc dehydrogenase) (UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase family NAD binding domain, PF00984: UDP-glucose/GDP-mannose dehydrogenase family central domain. PF03720: UDP-glucose/GDP-mannose dehydrogenase family UDP binding domain (68418.m04761) 4027 Not regulated NC-NC-NC 249472_at At5g39210 expressed protein (68418.m04749) 4028 Not regulated NC-NC-NC 249473_at At5g39340 two-component phosphorelay mediator 2 (HP2) nearly identical to ATHP2 [Arabidopsis Mariana] GI: 4156243 (68418.m04764) 4029 Not regulated NC-NC-NC 249452_at At5g39500 pattern formation protein, putative similar to SP|Q42510 Pattern formation protein EMB30 {Arabidopsis thaliana}; contains Pfam profile PF01389: Sec7 domain (68418.m04783) 4030 Not regulated NC-NC-NC 249453_at At5g39510 vesicle transport v-SNARE 11 (VTI11)/vesicle soluble NSF attachment protein receptor VTI1a (VTI1A) identical to SP|Q9SEL6 Vesicle transport v-SNARE 11 (AtVTI11) (Vesicle transport v-SNARE protein VTI1a) (Vesicle soluble NSF attachment protein receptor VTI1a) (AtVI1a) {Arabidopsis thaliana} (68418.m04784) 4031 Not regulated NC-NC-NC 249466_at At5g39740 60S ribosomal protein L5 (RPL5B) ribosomal protein L5, rice (68418.m04813) 4032 Not regulated NC-NC-NC 249441_at At5g39730 avirulence-responsive protein-related/avirulence induced gene (AIG) protein-related similar to SP|P54121 AIG2 protein {Arabidopsis thaliana} (68418.m04811) 4033 Not regulated NC-NC-NC 249443_at At5g39600 expressed protein (68418.m04796) 4034 Not regulated NC-NC-NC 249415_at At5g39660 Dof-type zinc finger domain-containing protein similar to H-protein promoter binding factor-2a GI: 3386546 from [Arabidopsis thaliana] (68418.m04802) 4035 Not regulated NC-NC-NC 249424_s_at At5g39800 60S ribosomal protein-related contains weak similarity to 60S ribosomal protein L27, mitochondrial precursor (YmL27) (Swiss- Prot: P36526) [Saccharomyces cerevisiae] (68418.m04821) 4036 Not regulated NC-NC-NC 249425_at At5g39790 5′-AMP-activated protein kinase beta-1 subunit-related contains similarity to Swiss-Prot: P80387 5′-AMP-activated protein kinase, beta-1 subunit (AMPK beta-1 chain) (AMPKb) (40 kDa subunit) [Sus scrofa] (68418.m04820) 4037 Not regulated NC-NC-NC 249427_at At5g39850 40S ribosomal protein S9 (RPS9C) 40S ribosomal protein S9 - Chlamydomonas sp., EMBL: AU066528 (68418.m04829) 4038 Not regulated NC-NC-NC 249385_at At5g39950 thioredoxin H-type 2 (TRX-H-2) (Gif2) identical to SP|Q38879 Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana}; identical to cDNA (Gif2) mRNA for thioredoxin GI: 992963 (68418.m04844) 4039 Not regulated NC-NC-NC 249393_at At5g40170 disease resistance family protein contains leucine rich-repeat (LRR) domains Pfam: PF00560, INTERPRO: IPR001611; similar to CI- 4 [Lycopersicon hirsutum] gi|2808683|emb|CAA05268 (68418.m04875) 4040 Not regulated NC-NC-NC 249395_at At5g40190 calmodulin-binding protein (68418.m04877) 4041 Not regulated NC-NC-NC 249396_at At5g40200 DegP protease, putative contains similarity to DegP2 protease GI: 13172275 from [Arabidopsis thaliana] (68418.m04878) 4042 Not regulated NC-NC-NC 249398_at At5g40250 zinc finger (C3HC4-type RING finger) family protein similar to RING-H2 finger protein RHX1a [Arabidopsis thaliana] GI: 3790591; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) (68418.m04883) 4043 Not regulated NC-NC-NC 249411_at At5g40390 raffinose synthase family protein similar to galactinol-raffinose galactosyltransferase [Vigna angularis] GI: 6634701, seed imbibition protein GB: AAA32975 GI: 167100 from [Hordeum vulgare]; contains Pfam profile PF05691: Raffinose synthase or seed imbibition protein Sip1 (68418.m04899) 4044 Not regulated NC-NC-NC 249380_at At5g40370 glutaredoxin, putative similar to glutaredoxin [Ricinus communis] SWISS-PROT: P55143 (68418.m04897) 4045 Not regulated NC-NC-NC 249355_at At5g40500 expressed protein (68418.m04912) 4046 Not regulated NC-NC-NC 249358_at At5g40510 expressed protein (68418.m04914) 4047 Not regulated NC-NC-NC 249380_at At5g40530 expressed protein contains Pfam profile PF05148: Protein of unknown function (DUF691) (68418.m04918) 4048 Not regulated NC-NC-NC 249373_at At5g40670 PQ-loop repeat family protein/transmembrane family protein similar to SP|O60931 Cystinosin {Homo sapiens}; contains Pfam profile PF04193: PQ loop repeat (68418.m04937) 4049 Not regulated NC-NC-NC 249342_at At5g40660 ATP12 protein-related weak similarity to SP|P22135 ATP12 protein, mitochondrial precursor {Saccharomyces cerevisiae} (68418.m04936) 4050 Not regulated NC-NC-NC 249343_at At5g40650 succinate dehydrogenase, iron-sulphur subunit, mitochondrial (SDH2-2) nearly identical to mitochondrial succinate dehydrogenase iron-sulphur subunit (sdh2-2) [gi: 12049600] from Arabidopsis thaliana (68418.m04935) 4051 Not regulated NC-NC-NC 249344_at At5g40770 prohibitin identical to prohibitin [Arabidopsis thaliana] GI: 1946331 (68418.m04948) 4052 Not regulated NC-NC-NC 249322_at At5g40930 mitochondrial import receptor subunit TOM20-4/translocase of outer membrane 20 kDa subunit 4 identical to mitochondrial import receptor subunit TOM20-4 SP: P82805 from [Arabidopsis thaliana] (68418.m04969) 4053 Not regulated NC-NC-NC 249324_at At5g40810 cytochrome c1, putative cytochrome c1, heme protein, mitochondrial precursor (Clone PC13III) [Solanum tuberosum] SWISS- PROT: P25076 (68418.m04955) 4054 Not regulated NC-NC-NC 249327_at At5g40890 chloride channel protein (CLC-a) identical to GI: 1742952 (gb|AAC05742.1) (68418.m04965) 4055 Not regulated NC-NC-NC 249331_at At5g40950 50S ribosomal protein L27, chloroplast, putative (RPL27) identical to SP|Q9FLN4 ribosomal protein L27, chloroplast precursor {Arabidopsis thaliana}; similar to SP|P30155 50S ribosomal protein L27, chloroplast precursor (CL27) {Nicotiana tabacum} (68418.m04975) 4056 Not regulated NC-NC-NC 249339_at At5g41100 expressed protein (68418.m04996) 4057 Not regulated NC-NC-NC 249288_at At5g41050 expressed protein (68418.m04990) 4058 Not regulated NC-NC-NC 249290_at At5g41060 zinc finger (DHHC type) family protein contains Pfam profile PF01529: DHHC zinc finger domain (68418.m04991) 4059 Not regulated NC-NC-NC 249291_at At5g41210 glutathione S-transferase (GST10) identical to glutathione transferase AtGST 10 [Arabidopsis thaliana] GI: 4049401 (68418.m05008) 4060 Not regulated NC-NC-NC 249299_at At5g41340 ubiquitin-conjugating enzyme 4 (UBC4) E2; identical to gi: 431265, SP: P42748 (68418.m05024) 4061 Not regulated NC-NC-NC 249310_at At5g41520 40S ribosomal protein S10 (RPS10B) contains similarity to 40S ribosomal protein S10 (68418.m05044) 4062 Not regulated NC-NC-NC 249267_at At5g41600 reticulon family protein (RTNLB4) weak similarity to Nogo-C protein [Rattus norvegicus] GI: 6822251, SP|O95197 Reticulon protein 3 (Neuroendocrine-specific protein-like) {Homo sapiens}; contains Pfam profile PF02453: Reticulon (68418.m05054) 4063 Not regulated NC-NC-NC 249268_at At5g41685 mitochondrial import receptor subunit TOM7/translocase of outer membrane 7 kDa subunit (TOM7.1) identical to SP|Q9ASY8 Mitochondrial import receptor subunit TOM7 (Translocase of outer membrane 7 kDa subunit) {Arabidopsis thaliana} (68418.m05066) 4064 Not regulated NC-NC-NC 249281_at At5g41940 RabGAP/TBC domain-containing protein similar to GTPase activating protein [Yarrowia lipolytica] GI: 2370595; contains Pfam profile PF00566: TBC domain (68418.m05106) 4065 Not regulated NC-NC-NC 249282_at At5g41760 nucleotide-sugar transporter family protein low similarity to SP|Q61420 CMP-sialic acid transporter {Mus musculus}; contains Pfam profile PF04142: Nucleotide-sugar transporter (68418.m05084) 4066 Not regulated NC-NC-NC 249284_at At5g41810 expressed protein (68418.m05090) 4067 Not regulated NC-NC-NC 249285_at At5g41960 expressed protein (68418.m05109) 4068 Not regulated NC-NC-NC 249224_at At5g42130 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein (68418.m05129) 4069 Not regulated NC-NC-NC 249227_at At5g42180 peroxidase 64 (PER64) (P64) (PRXR4) identical to SP|Q43872 Peroxidase 64 precursor (EC 1.11.1.7) (Atperox P64) (PRXR4) (ATP17a) {Arabidopsis thaliana} (68418.m05134) 4070 Not regulated NC-NC-NC 249228_at At5g42190 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 (AI2)/UFO-binding protein (UIP2) E3 ubiquitin ligase; skp1b; identical to UIP2 GI: 3719211 from [Arabidopsis thaliana]; contains Pfam profiles PF01466: Skp1 family, dimensation domain and PF03931: Skp1 family, tetramerisation domain; identical to cDNA UFO binding protein UIP2 mRNA, partial cds GI: 3719210 (68418.m05135) 4071 Not regulated NC-NC-NC 249229_at At5g42090 expressed protein (68418.m05124) 4072 Not regulated NC-NC-NC 249230_at At5g42070 expressed protein similar to unknown protein (dbi|BAA92898.1) (68418.m05121) 4073 Not regulated NC-NC-NC 249231_at At5g42030 expressed protein similar to unknown protein (emb|CAB66408.1) (68418.m05117) 4074 Not regulated NC-NC-NC 249236_at At5g41950 expressed protein (68418.m05108) 4075 Not regulated NC-NC-NC 249238_at At5g41970 expressed protein contains Pfam profile PF03690: Uncharacterised protein family (UPF0160) (68418.m05110) 4076 Not regulated NC-NC-NC 249239_at At5g41990 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68418.m05112) 4077 Not regulated NC-NC-NC 249248_at At5g42320 zinc carboxypeptidase family protein contains Pfam domain, PF00246: Zinc carboxypeptidase (68418.m05150) 4078 Not regulated NC-NC-NC 249216_at At5g42240 serine carboxypeptidase S10 family protein similar to Serine carboxypeptidase II-3 precursor (SP: P52711) (CP-MII.3, [Hordeum vulgare] (68418.m05142) 4079 Not regulated NC-NC-NC 249218_at At5g42390 metalloendopeptidase identical to chloroplast processing enzyme metalloendopeptidase [Arabidopsis thaliana] gi|2827039|gb|AAC39482 (68418.m05161) 4080 Not regulated NC-NC-NC 249220_at At5g42420 transporter-related low similarity to phosphoenolpyruvate/phosphate translocator precursor [Mesembryanthemum crystallinum] GI: 9295275, glucose-6-phosphate/phosphate-translocator precursor [Solanum tuberosum] GI: 2997593 (68418.m05164) 4081 Not regulated NC-NC-NC 249192_at At5g42470 expressed protein low similarity to BRE alpha b isoform [Homo sapiens] GI: 16326573 (68418.m05170) 4082 Not regulated NC-NC-NC 249193_at At5g42480 DNAJ plastid division protein (ARC6) almost identical to dnaJ plastid division protein ARC6 (GI: 33436339) [Arabidopsis thaliana]; low similarity to cell division protein Ftn2 [Synechococcus sp. PCC 7942] GI: 16226084; contains Pfam profile PF00226: DnaJ domain (68418.m05171) 4083 Not regulated NC-NC-NC 249195_s_at At5g42500 disease resistance-responsive family protein similar to disease resistance response protein 206-d [Pisum sativum] gi|508844|gb|AAB18669 (68418.m05173) 4084 Not regulated NC-NC-NC 249196_at At5g42560 abscisic acid-responsive HVA22 family protein weak similarity to SP|Q00765 Polyposis locus protein 1 (TB2 protein) {Homo sapiens}; contains Pfam profile PF03134: TB2/DP1, HVA22 family (68418.m05180) 4085 Not regulated NC-NC-NC 249199_at At5g42520 expressed protein (68418.m05176) 4086 Not regulated NC-NC-NC 249204_at At5g42570 expressed protein low similarity to SP|P51572 B-cell receptor-associated protein 31 (6C6-AG tumor-associated antigen) (DXS1357E) {Homo sapiens} (68418.m05183) 4087 Not regulated NC-NC-NC 249210_at At5g42670 agent domain-containing protein contains Pfam PF05641: Agent domain (68418.m05198) 4088 Not regulated NC-NC-NC 249214_at At5g42720 glycosyl hydrolase family 17 protein similar to glucan endo-1,3-beta-glucosidase precursor SP: P52409 from [Triticum aestivum] (68418.m05203) 4089 Not regulated NC-NC-NC 249188_at At5g42830 transferase family protein similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase, Dianthus caryophyllus [gi: 2239091]; contains Pfam transferase family domain PF002458 (68418.m05219) 4090 Not regulated NC-NC-NC 249161_at At5g42790 20S proteasome alpha subunit F1 (PAF1) (gb|AAC32062.1) (68418.m05212) 4091 Not regulated NC-NC-NC 249162_at At5g42765 expressed protein (68418.m05208) 4092 Not regulated NC-NC-NC 249163_at At5g42740 glucose-6-phosphate isomerase, cytosolic (PGIC) identical to SP|P34795 Glucose-6-phosphate isomerase, cytosolic (EC 5.3.1.9) (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) {Arabidopsis thaliana}; contains Pfam profile PF00342: glucose-6-phosphate isomerase (68418.m05205) 4093 Not regulated NC-NC-NC 249165_at At5g42810 expressed protein similar to unknown protein (pir||T26506) (68418.m05214) 4094 Not regulated NC-NC-NC 249171_at At5g42940 zinc finger (C3HC4-type RING finger) family protein similar to Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) (68418.m05235) 4095 Not regulated NC-NC-NC 249175_at At5g42970 COP9 signalosome complex subunit 4/CSN complex subunit 4 (CSN4) (COP8) (FUS4) FUSCA4, COP8, CSN4; identical to CSN complex subunit 4 [Arabidopsis thaliana] GI: 18056659, COP8 [Arabidopsis thaliana] GI: 5802627; contains Pfam profile PF01399: PCI domain; identical to cDNA CSN complex subunit 4 (CSN4) GI: 18056658 (68418.m05241) 4096 Not regulated NC-NC-NC 249176_at At5g42980 thioredoxin H-type 3 (TRX-H-3) (GIF1) identical to SP|Q42403 Thioredoxin H-type 3 (TRX-H-3) {Arabidopsis thaliana}; identical to cDNA (GIF1) mRNA for thioredoxin GI: 992961 (68418.m05242) 4097 Not regulated NC-NC-NC 249177_at At5g42850 expressed protein (68418.m05222) 4098 Not regulated NC-NC-NC 249178_at At5g42890 sterol carrier protein 2 (SCP-2) family protein similar to sterol carrier protein-2 [Homo sapiens] GI: 432973; contains Pfam profile PF02036: SCP-2 sterol transfer family (68418.m05227) 4099 Not regulated NC-NC-NC 249180_at At5g43010 26S proteasome AAA-ATPase subunit (RPT4a) gb|AAF22524.1 (68418.m05245) 4100 Not regulated NC-NC-NC 249181_at At5g42920 expressed protein (68418.m05232) 4101 Not regulated NC-NC-NC 249182_at At5g42960 expressed protein(68418.m05239) 4102 Not regulated NC-NC-NC 249183_at At5g42990 ubiquitin-conjugating enzyme 18 (UBC18) E2; identical to gi: 2801448 (68418.m05243) 4103 Not regulated NC-NC-NC 249133_at At5g43130 transcription initiation factor IID (TFIID) component TAF4 family protein weak similarity to SP|O00268 Transcription initiation factor TFIID 135 kDa subunit {Homo sapiens}; contains Pfam profile PF05236: Transcription initiation factor TFIID component TAF4 family (68418.m05265) 4104 Not regulated NC-NC-NC 249136_at At5g43180 expressed protein contains Pfam profile PF04654: Protein of unknown function, DUF599 (68418.m05272) 4105 Not regulated NC-NC-NC 249138_at At5g43070 MFP1 attachment factor, putative contains similarity to MFP1 attachment factor 1 similar to MFP1 attachment factor 1 [Glycine max] gi|7546729|gb|AAF63659 (68418.m05258) 4106 Not regulated NC-NC-NC 249140_at At5g43190 F-box family protein (FBX6) contains similarity to unusual floral organs (UFO) GI: 4376159 from [Arabidopsis thaliana] (68418.m05276) 4107 Not regulated NC-NC-NC 249147_at At5g43330 malate dehydrogenase, cytosolic, putative strong similarity to cytosolic malate dehydrogenase (EC 1.1.1.37) SP|O24047 {Mesembryanthemum crystallinum}, SP|O48905 {Medicago sativa}, [Prunus persica] GI: 15982948; contains InterPro entry IPR001236: Lactate/malate dehydrogenase (68418.m05296) 4108 Not regulated NC-NC-NC 249158_at At5g43430 electron transfer flavoprotein beta subunit family protein contains Pfam profile: PF01012 electron transfer flavoprotein, beta subunit (68418.m05310) 4109 Not regulated NC-NC-NC 249159_at At5g43460 lesion inducing protein-related similar to ORF, able to induce HR-like lesions [Nicotiana tabacum] (68418.m05313) 4110 Not regulated NC-NC-NC 249128_at At5g43440 2-oxoglutarate-dependent dioxygenase, putative similar to 2A6 (GI: 599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967) (68418.m05311) 4111 Not regulated NC-NC-NC 249100_at At5g43560 meprin and TRAF homology domain-containing protein/MATH domain-containing protein weak similarity to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI: 11993471; contains Pfam profile PF00917: MATH domain (68418.m05325) 4112 Not regulated NC-NC-NC 249103_at At5g43600 N-carbamyl-L-amino acid hydrolase, putative similar to N-carbamoyl-L-amino acid hydrolase [Bacillus stearothermophilus] SWISS- PROT: Q53389 (68418.m05330) 4113 Not regulated NC-NC-NC 249120_at At5g43750 expressed protein (68418.m05350) 4114 Not regulated NC-NC-NC 249121_at At5g43830 expressed protein similar to auxin down-regulated protein ARG10 [Vigna radiata] GI: 2970051, wali7 (aluminum-induced protein) [Triticum aestivum] GI: 451193 (68418.m05359) 4115 Not regulated NC-NC-NC 249124_at At5g43740 disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. (68418.m05347) 4116 Not regulated NC-NC-NC 249093_at At5g43880 expressed protein (68418.m05366) 4117 Not regulated NC-NC-NC 249072_at At5g44060 expressed protein similar to unknown protein (gb|AAD10670.1) (68418.m05391) 4118 Not regulated NC-NC-NC 249075_at At5g44000 glutathione S-transferase C-terminal domain-containing protein contains Pfam domain PF00043: Glutathione 5-transferase, C- terminal domain (68418.m05384) 4119 Not regulated NC-NC-NC 249077_at At5g43940 alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase/GSH-FDH (ADHIII) identical to gi: 1143388 (68418.m05376) 4120 Not regulated NC-NC-NC 249081_at At5g44090 calcium-binding EF hand family protein, putative/protein phosphatase 2A 62 kDa B″ regulatory subunit, putative contains Pfam profile: PF00036 EF hand; identical to cDNA protein phosphatase 2A 62 kDa B″ regulatory subunit GI: 5533378 (68418.m05394) 4121 Not regulated NC-NC-NC 249089_at At5g44240 haloacid dehalogenase-like hydrolase family protein similar to Potential phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus musculus} SP|P70704, {Bos taurus} SP|Q29449; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase (68418.m05412) 4122 Not regulated NC-NC-NC 249063_at At5g44110 ABC transporter family protein (68418.m05397) 4123 Not regulated NC-NC-NC 249064_at At5g44250 expressed protein contains Pfam PF05705: Eukaryotic protein of unknown function (DUF829) (68418.m05413) 4124 Not regulated NC-NC-NC 249036_at At5g44200 nuclear cap-binding protein, putative similar to SP|P52298 20 kDa nuclear cap binding protein (CBP20) (NCBP interacting protein 1) {Homo sapiens}; non-consensus AT donor splice site at exon 4, AC acceptor splice site at axon 5; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68418.m05408) 4125 Not regulated NC-NC-NC 249040_at At5g44320 eukaryotic translation initiation factor 3 subunit 7, putative/eIF-3 zeta, putative/eIF3d, putative similar to initiation factor 3d [Arabidopsis thaliana] GI: 12407755, SP|O15371 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66) (eIF3d) {Homo sapiens}; contains Pfam profile PF05091: Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (68418.m05427) 4126 Not regulated NC-NC-NC 249049_at At5g44340 tubulin beta-4 chain (TUB4) nearly identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis thaliana} (68418.m05429) 4127 Not regulated NC-NC-NC 249050_at At5g44290 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain (68418.m05421) 4128 Not regulated NC-NC-NC 249057_at At5g44480 NAD-dependent epimerase/dehydratase family protein similar to SP|P55180 UDP-glucose 4-epimerase (EC 5.1.3.2) from Bacillus subtilis, GI: 3021357 UDP-galactose 4-epimerase from Cyamopsis tetragonoloba; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family (68418.m05450) 4129 Not regulated NC-NC-NC 249010_at At5g44580 expressed protein (68418.m05463) 4130 Not regulated NC-NC-NC 249014_at At5g44710 expressed protein similar to unknown protein (ref|NP_011731.1) (68418.m05478) 4131 Not regulated NC-NC-NC 249026_at At5g44785 expressed protein contains Pfam PF05329: Protein of unknown function (DUF731) (68418.m05489) 4132 Not regulated NC-NC-NC 249029_at At5g44870 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. (68418.m05501) 4133 Not regulated NC-NC-NC 249033_at At5g44920 Toll-Interleukin-Resistance (TIR) domain-containing protein domain signature TIR exists, suggestive of a disease resistance protein. (68418.m05507) 4134 Not regulated NC-NC-NC 248978_at At5g45070 disease resistance protein (TIR class), putative domain signature TIR exists, suggestive of a disease resistance protein. (68418.m05527) 4135 Not regulated NC-NC-NC 248981_at At5g45110 ankyrin repeat family protein/BTB/POZ domain-containing protein contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00851: BTB/POZ domain (68418.m05536) 4136 Not regulated NC-NC-NC 248983_at At5g45130 Ras-related protein (RHA1)/small GTP-binding protein identical to Ras-related protein RHA1 SP: P31582 from [Arabidopsis thaliana] (68418.m05540) 4137 Not regulated NC-NC-NC 248986_at At5g45170 CbbY protein-related low similarity to SP|P40119 CbbY protein, chromosomal {Alcaligenes eutrophus} (68418.m05545) 4138 Not regulated NC-NC-NC 248950_at At5g45390 ATP-dependent Clp protease proteolytic subunit (ClpP4) identical to nClpP4 GI: 5380593 from [Arabidopsis thaliana] (68418.m05578) 4139 Not regulated NC-NC-NC 248951_at At5g45550 mob1/phocein family protein contains Pfam profile: PF03637 Mob1/phocein family (68418.m05594) 4140 Not regulated NC-NC-NC 248955_at At5g45600 YEATS family protein contains Pfam domain PF03366: YEATS family (68418.m05603) 4141 Not regulated NC-NC-NC 248957_at At5g45620 26S proteasome regulatory subunit, putative (RPN9) contains similarity to 26S proteasome subunit p40.5 GI: 3618343 from [Homo sapiens] (68418.m05607) 4142 Not regulated NC-NC-NC 248958_at At5g45590 expressed protein (68418.m05601) 4143 Not regulated NC-NC-NC 248908_at At5g45800 leucine-rich repeat transmembrane protein kinase, putative (68418.m05632) 4144 Not regulated NC-NC-NC 248914_at At5g45750 Ras-related GTP-binding protein, putative similar to GTP-binding protein GI: 303744 from [Pisum sativum] (68418.m05624) 4145 Not regulated NC-NC-NC 248920_at At5g45930 magnesium-chelatase subunit chII, chloroplast, putative/Mg-protoporphyrin IX chelatase, putative similar to SP|P161127 from Arabidopsis thaliana, SP|P93162 from Glycine max, SP|O22436 from Nicotiana tabacum; non-consensus AA donor splice site at exon 1, TG acceptor splice site at exon 2 (68418.m05648) 4146 Not regulated NC-NC-NC 248923_at At5g45940 MutT/nudix family protein contains Pfam profile PF00293: NUDIX domain (68418.m05649) 4147 Not regulated NC-NC-NC 248927_at At5g45900 autophagy 7 (APG7) nearly identical to autophagy 7 [Arabidopsis thaliana] GI: 19912147; contains Pfam profile PF00899: ThiF family (68418.m05645) 4148 Not regulated NC-NC-NC 248878_at At5g46160 ribosomal protein L14 family protein/huellenlos paralog (HLP) contains Pfam profile PF00238: Ribosomal protein L14p/L23e; identical to cDNA HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial product GU: 18140859 (68418.m05677) 4149 Not regulated NC-NC-NC 248879_at At5g46180 omithine aminotransferase, putative/omithine-oxo-acid aminotransferase, putative similar to SP|Q92413 Omithine aminotransferase (EC 2.6.1.13) (Omithine-oxo-acid aminotransferase) [Aspergillus nidulans] {Emericella nidulans}: contains Pfam profile PF00202: aminotransferase, class III (68418.m05680) 4150 Not regulated NC-NC-NC 248884_at At5g46030 expressed protein contains Pfam profile PF05129: Putative zinc binding domain (DUF701) (68418.m05661) 4151 Not regulated NC-NC-NC 248886_at At5g46110 phosphate/triose-phosphate translocator, putative identical to phosphate/triose-phosphate translocator precursor [Arabidopsis thaliana] gi|3983125|gb|AAC83815; similar to triose phosphate/phosphate translocator, chloroplast precursor (CTPT)(Cauliflower){Brassica oleracea} SWISS-PROT: P52177 (68418.m05669) 4152 Not regulated NC-NC-NC 248896_at At5g46350 WRKY family transcription factor contains similarity to WRKY-type DNA-binding protein (68418.m05705) 4153 Not regulated NC-NC-NC 248903_at At5g46290 3-oxoacyl-[acyl-carrier-protein] synthase I identical to Swiss-Prot: P52410 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplast precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase I) (KAS I) [Arabidopsis thaliana] (68418.m05698) 4154 Not regulated NC-NC-NC 248905_at At5g46250 RNA recognition motif (RRM)-containing protein contains similarity to RNA-binding protein; contains InterPro entry IPR000504: RNA binding region RNP-1 (RNA recognition motif) (RRM) (68418.m05693) 4155 Not regulated NC-NC-NC 248906_at At5g46420 16S rRNA processing protein RimM family contains weak similarity to Swiss-Prot: O74933 UDP-N-acetylglucosamine pyrophosphorylase [Candida albicans]; contains Pfam profiles PF01782: 16S rRNA processing protein RimM, PF05239: PRC- barrel domain (68418.m05713) 4156 Not regulated NC-NC-NC 248854_at At5g46580 pentatricopeptide (PPR) repeat-containing protein contains similarity to 67 kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus] GI: 9755886; contains Pfam profile PF01535: PPR repeat (68418.m05735) 4157 Not regulated NC-NC-NC 248856_at At5g46620 expressed protein similar to unknown protein (pir||T05082) (68418.m05739) 4158 Not regulated NC-NC-NC 248858_at At5g46630 clathrin adaptor complexes medium subunit family protein contains Pfam profile: PF00928 adaptor complexes medium subunit family (68418.m05740) 4159 Not regulated NC-NC-NC 248861_at At5g46700 senescence-associated protein, putative similar to senescence-associated protein 5 [Hemerocallis hybrid cultivar] gi|3551954|gb|AAC34855 (68418.m05754) 4160 Not regulated NC-NC-NC 248863_at At5g46750 human Rev interacting-like family protein/hRIP family protein contains Pfam profile PF01412: Putative GTP-ase activating protein for Arf (68418.m05759) 4161 Not regulated NC-NC-NC 248865_at At5g46790 expressed protein similar to unknown protein (pir||T05073) (68418.m05764) 4162 Not regulated NC-NC-NC 248869_at At5g46840 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68418.m05771) 4163 Not regulated NC-NC-NC 248838_at At5g46800 mitochondrial camitine/acyl carrier, putative/a bout de souffle (BOU)/CAC-like protein identical to SP|Q93XM7 Mitochondrial camitine/acylcamitine carrier-like protein (A BOUT DE SOUFFLE) (Camitine/acylcamitine translocase-like protein) (CAC-like protein) {Arabidopsis thaliana}; contains Pfam profile: PF00153 mitochondrial carrier protein (68418.m05766) 4164 Not regulated NC-NC-NC 248813_at At5g46860 syntaxin 22 (SYP22) (VAM3) identical to GP|8809669| syntaxin related protein AtVam3p [Arabidopsis thaliana] (68418.m05774) 4165 Not regulated NC-NC-NC 248818_at At5g47040 Lon protease homolog 1, mitochondrial (LON) identical to Lon protease homolog 1 mitochondrial precursor SP: O64948 from [Arabidopsis thaliana] (68418.m05797) 4166 Not regulated NC-NC-NC 248820_at At5g47060 senescence-associated protein-related similar to senescence-associated protein SAG102 (GI: 22331931) [Arabidopsis thaliana]; (68418.m05799) 4167 Not regulated NC-NC-NC 248825_at At5g47030 ATP synthase data′ chain, mitochondrial identical to SP|Q96252 ATP synthase delta′ chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile PF02823: ATP synthase, Delta/Epsilon chain, beta-sandwich domain (68418.m05796) 4168 Not regulated NC-NC-NC 248826_at At5g47080 casein kinase II beta chain, putative similar to casein kinase II beta chain (CK II) [Arabidopsis thaliana] SWISS-PROT: P40228 (68418.m05802) 4169 Not regulated NC-NC-NC 248827_at At5g47100 calcineurin B-like protein 9 (CBL9) identical to calcineurin B-like protein 9 (GI: 5866279) and calcium-binding protein AtCBL9 (GI: 16151825) [Arabidopsis thaliana]; similar to calcineurin B-like protein 1 (GI: 3309082) [Arabidopsis thaliana] (68418.m05807) 4170 Not regulated NC-NC-NC 248828_at At5g47110 lil3 protein, putative similar to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD26780 (68418.m05808) 4171 Not regulated NC-NC-NC 248792_at At5g47200 Ras-related GTP-binding protein, putative similar to GTP-binding protein GI: 303750 from [Pisum sativum] (68418.m05820) 4172 Not regulated NC-NC-NC 248795_at At5g47390 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain (68418.m05840) 4173 Not regulated NC-NC-NC 248796_at At5g47180 vesicle-associated membrane family protein/VAMP family protein similar to VAP27 GI: 8688926 [Nicotiana plumbeginifolia], to VAMP-associated protein B GI: 4240464 [Rattus norvegicus] and to Vesicle-associated membrane protein/synaptobrevin binding protein (VAP-33) (SP: Q16943)[Aplysia califorica] (68418.m05817) 4174 Not regulated NC-NC-NC 248798_at At5g47190 ribosomal protein L19 family protein similar to plastid ribosomal protein L19 precursor [Spinacia oleracea] gi|7582403]gb|AAF64312 (68418.m05819) 4175 Not regulated NC-NC-NC 248800_at At5g47320 30S ribosomal protein S19, mitochondrial (RPS19) (68418.m05833) 4176 Not regulated NC-NC-NC 248801_at At5g47370 homeobox-leucine zipper protein 2 (HAT2)/HD-ZIP protein 2 identical to homeobox-leucine zipper protein HAT2 (HD-ZIP protein 2) [Arabidopsis thaliana] SP: P46601; contains Pfam profiles PF04618: HD-ZIP protein N terminus, PF02183: Homeobox associated leucine zipper, PF00046: Homeobox domain (68418.m05838) 4177 Not regulated NC-NC-NC 248802_at At5g47435 formyltetrahydrofolate deformylase, putative similar to formyltetrahydrofolate deformylase [strain PCC 6803 - Synechocystis sp.] SWISS-PROT: Q55135 (68418.m05845) 4178 Not regulated NC-NC-NC 248805_at At5g47480 expressed protein (68418.m05863) 4179 Not regulated NC-NC-NC 248751_at At5g47540 Mo25 family protein similar to MO25 protein (early mouse development protein family) [Mouse] SWISS-PROT: Q06138 (68418.m05869) 4180 Not regulated NC-NC-NC 248757_at At5g47680 expressed protein contains Pfam profile PF04243: Protein of unknown function (DUF425) (68418.m05886) 4181 Not regulated NC-NC-NC 248759_at At5g47610 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc forger, C3HC4 type (RING finger) (68418.m05876) 4182 Not regulated NC-NC-NC 248760_at At5g47570 expressed protein (68418.m05872) 4183 Not regulated NC-NC-NC 248764_at At5g47640 CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3) (AHAP3) family (Hap3b) similar to CAAT-box DNA binding protein subunit B (NF-TB) (SP: P25209) (GI: 22380) [Zea mays]; contains Pfam PF00808: Histone-like transcription factor (CBF/NF- Y) and archaeal histone; identical to cDNA transcription factor Hap3b (Hap3b) mRNA, partial cds GI: 9965734 (68418.m05882) 4184 Not regulated NC-NC-NC 248767_at At5g47710 C2 domain-containing protein contains similarity to CLB1 [Lycopersicon esculentum] GI: 2789434; contains Pfam profile PF00168: C2 domain (68418.m05891) 4185 Not regulated NC-NC-NC 248768_at At5g47700 60S acidic ribosomal protein P1 (RPP1C) (68418.m05889) 4186 Not regulated NC-NC-NC 248769_at At5g47730 SEC14 cytosolic factor, putative/polyphosphoinositide-binding protein, putative similar to polyphosphoinositide binding protein SEC14 homolog Ssh1p (GI: 2739044) {Glycine max} (68418.m05897) 4187 Not regulated NC-NC-NC 248748_at At5g47840 adenylate kinase, chloroplast, putative/ATP-AMP transphosphorylase, putative similar to SP|P43188 Adenylate kinase, chloroplast (EC 2.7.4.3) (ATP-AMP transphosphorytase) {Zea mays}; contains Pfam profile PF00406: Adenylate kinase (68418.m05911) 4188 Not regulated NC-NC-NC 248749_at At5g47880 eukaryotic peptide chain release factor subunit 1-1 (ERF1-1) identical to SP|Q39097 Eukaryotic peptide chain release factor subunit 1-1 (eRF1-1) (Eukaryotic release factor 1-1) (Omnipotent suppressor protein 1 homolog 1) (SUP1 homolog 1) {Arabidopsis thaliana}, eukaryotic release factor 1 homolog GI: 1155261 from [Arabidopsis thaliana]; contains Pfam profiles: PF03463 eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1 domain 3 (68418.m05915) 4189 Not regulated NC-NC-NC 248718_at At5g47770 famesyl pyrophosphate synthetase 1, mitochondrial (FPS1)/FPP synthetase 1/famesyl diphosphate synthase 1 identical to SP|Q09152 Famesyl pyrophosphate synthetase 1, mitochondrial precursor (FPP synthetase 1) (FPS 1) (Famesyl diphosphate synthetase 1) [Includes: Dimethylallyltransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] {Arabidopsis thaliana} (68418.m05901) 4190 Not regulated NC-NC-NC 248719_at At5g47910 respiratory burst oxidase protein D (RbohD)/NADPH oxidase identical to respiratory burst oxidase protein D from Arabidopsis thaliana [gi: 3242789] (68418.m05918) 4191 Not regulated NC-NC-NC 248737_at At5g48120 expressed protein low similarity to MMS19 [Mus musculus] GI: 14029390 (68418.m05944) 4192 Not regulated NC-NC-NC 248738_at At5g48020 expressed protein (68418.m05934) 4193 Not regulated NC-NC-NC 248739_at At5g48030 DNAJ heat shock protein, mitochondrially targeted (GFA2) 99.8% identical to mitochondrially targeted DnaJ protein GFA2 [Arabidopsis thaliana] GI: 21429604; contains Pfam profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal region, PF00684: DnaJ central domain (4 repeats) (68418.m05935) 4194 Not regulated NC-NC-NC 248688_at At5g48220 indole-3-glycerol phosphate synthase, putative similar to SP|P49572 (68418.m05957) 4195 Not regulated NC-NC-NC 248689_at At5g48150 phyrochrome A signal transduction 1 (PAT1) (68418.m05947) 4196 Not regulated NC-NC-NC 248690_at At5g48230 acetyl-CoA C-acyltransferase, putative/3-ketoacyl-CoA thiolase, putative strong similarity to Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus sativus] GI: 1542941; contains InterPro accession IPR002155: Thiolase (66418.m05958) 4197 Not regulated NC-NC-NC 248698_at At5g48380 leucine-rich repeat family protein/protein kinase family protein contains protein kinase domain, Pfam: PF00069; contains leucine- rich repeats, Pfam: PF00560 (68418.m05978) 4198 Not regulated NC-NC-NC 248700_at At5g48400 glutamate receptor family protein (GLR1.2) plant glutamate receptor family, PMID: 11379626 (68418.m05984) 4199 Not regulated NC-NC-NC 248701_at At5g48410 glutamate receptor family protein (GLR1.3) plant glutamate receptor family, PMID: 11379626 (68416.m05986) 4200 Not regulated NC-NC-NC 248659_at At5g48640 cyclin family protein similar to SP|P55168 Cyclin C {Gallus gallus}; contains Pfam profile PF00134: Cyan, N-terminal domain (68418.m06015) 4201 Not regulated NC-NC-NC 248663_at At5g48590 expressed protein (68418.m06010) 4202 Not regulated NC-NC-NC 248666_at At5g48630 cyclin family protein similar to SP|P55168 Cyclin C {Gallus gallus}; contains Pfam profile PF00134: Cyclin, N-terminal domain (68418.m06014) 4203 Not regulated NC-NC-NC 248678_at At5g48870 small nuclear ribonucleoprotein, putative/snRNP, putative/Sm protein, putative similar to U6 snRNA-associated Sm-like protein LSm5 [Homo sapiens] SWISS-PROT: Q9Y4Y9 (68418.m06045) 4204 Not regulated NC-NC-NC 248681_at At5g48900 pectate lyase family protein similar to pectate lyase GP: 14531296 front [Fragaria x ananassa]; non-consensus AG donor splice site at exon 2 (68418.m08049) 4205 Not regulated NC-NC-NC 248655_at At5g48760 60S ribosomal protein L13A (RPL13aD) (68418.m06034) 4206 Not regulated NC-NC-NC 248624_at At5g48790 expressed protein (68418.m06037) 4207 Not regulated NC-NC-NC 248595_at At5g49230 drought-responsive family protein similar to drought-induced mRNA, Di19 [Arabidopsis thaliana] gi|469110|emb|CAA55321 (68418.m06094) 4208 Not regulated NC-NC-NC 248601_at At5g49400 zinc knuckle (CCHC-type) family protein contains Pfam domain, PF00098: Zinc knuckle (68418.m06113) 4209 Not regulated NC-NC-NC 248608_at At5g49460 ATP-citrate synthase, putative/ATP-citrate (pro-S-)-lyase, putative/citrate cleavage enzyme, putative strong similarity to ATP: citrate lyase [Capsicum annuum] GI: 13160653; contains Pfam profiles PF00549: CoA-ligase, PF02629: CoA binding domain (68418.m06119) 4210 Not regulated NC-NC-NC 248612_at At5g49530 SIN-like family protein low similarity to Sex-lethal interactor [Drosophila melanogaster] GI: 6049274; contains Pfam profile PF04801: Sin-like protein conserved region (68418.m06130) 4211 Not regulated NC-NC-NC 248615_at At5g49570 transglutaminase-like family protein low similarity to peptide:N-glycanase PNGase [Mus musculus] GI: 8347622; contains Pfam profile PF01841: Transglutaminase-like superfamily (68418.m06135) 4212 Not regulated NC-NC-NC 248567_at At5g49550 expressed protein (68418.m06132) 4213 Not regulated NC-NC-NC 248589_at At5g49510 VHL binding protein, putative/prefoldin, putative similar to Swiss-Prot: Q15765 prefoldin subunit 3 (Von Hippel-Lindau binding protein 1; VHL binding protein-1; VBP-1; HIBBJ46) [Mus musculus] (68418.m06127) 4214 Not regulated NC-NC-NC 248591_at At5g49650 xylulose kinase, putative similar to D-xylulokinase [Pichia stipitis] gi|8100400|gb|AAF72328 (68418.m06145) 4215 Not regulated NC-NC-NC 248565_at At5g49710 expressed protein similar to unknown protein (pir||T05575) (68418.m06154) 4216 Not regulated NC-NC-NC 248574_at At5g49830 expressed protein (68418.m06171) 4217 Not regulated NC-NC-NC 248575_at At5g49840 ATP-dependent Ctp protease ATP-binding subunit CtpX, putative similar to CLP protease regulatory subunit CLPX GI: 2674203 from [Arabidopsis thaliana]; non-consensus splice donor GC at exon 4; non-consensus splice donor AA at exon 7 (68418.m06172) 4218 Not regulated NC-NC-NC 248580_at At5g49890 chloride channel protein (CLC-c) identical to gi: 1742956 (68418.m06178) 4219 Not regulated NC-NC-NC 248583_at At5g49930 zinc knuckle (CCHC-type) family protein contains Pfam domain, PF00098: Zinc knuckle (68418.m06182) 4220 Not regulated NC-NC-NC 248560_at At5g49970 pyridoxamine 5′-phosphate oxidase-related contains weak similarity to Pyridoxamine 5′-phosphate oxidase (EC 1.4.3.5) (PNP/PMP oxidase.) (PNPOx). (Swiss-Prot: P28225) [Shigella flexneri] (68418.m06187) 4221 Not regulated NC-NC-NC 248529_at At5g50000 protein kinase, putative similar to protein kinase ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079 (68418.m06191) 4222 Not regulated NC-NC-NC 248532_at At5g49940 nitrogen fixation NifU-like family protein similar to Nitrogen fixation protein nifU (SP: Q43885) {Anabeena azollae}; contains Pfam profile: PF01106 NifU-like domain (68418.m06183) 4223 Not regulated NC-NC-NC 248537_at At5g50100 expressed protein contains Pfam domain PF04134: Protein of unknown function, DUF393 (68418.m06204) 4224 Not regulated NC-NC-NC 248543_at At5g50230 transducin family protein/WD-40 repeat family protein contains 7 WD-40 repeats (PF00400); similar to TIPD PROTEIN (SP: O15736)[Dictyostelium discoideum] (68418.m06221) 4225 Not regulated NC-NC-NC 248550_at At5g50210 quinolinate synthetase A-related contains weak similarity to Swiss-Prot: P11458 quinolinate synthetase A [Escherichia coli] (68418.m06219) 4226 Not regulated NC-NC-NC 248551_at At5g50200 expressed protein similar to unknown protein (pir||T05562) isoform contains a non-consensus AT acceptor splice site at intron 1 (68418.m06216) 4227 Not regulated NC-NC-NC 248552_at At5g50250 31 kDa ribonucleoprotein, chloroplast, putative/RNA-binding protein RNP-T, putative/RNA-binding protein 1/2/3, putative/RNA- binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis thaliana}); contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68418.m06223) 4228 Not regulated NC-NC-NC 248556_at At5g50350 expressed protein (68418.m06236) 4229 Not regulated NC-NC-NC 248497_at At5g50380 exocyst subunit EXO70 family protein contains Pfam domain PF03081: Exo70 exocyst complex subunit; (68418.m06240) 4230 Not regulated NC-NC-NC 248499_at At5g50400 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase (68418.m06242) 4231 Not regulated NC-NC-NC 248500_at At5g50410 expressed protein (68418.m06243) 4232 Not regulated NC-NC-NC 248507_at At5g50420 expressed protein strong similarity to unknown protein (gb|AAD50008.1) (68418.m06244) 4233 Not regulated NC-NC-NC 248508_at At5g50320 radical SAM domain-containing protein/GCN5-related N-acetyltransferase (GNAT) family protein contains Pfam profiles PF00583: acetyltransferase. GNAT family, PF04055: Radical SAM superfamily (68418.m06232) 4234 Not regulated NC-NC-NC 248511_at At5g50375 cyclopropyl isomerase (CPI1) (68418.m06239) 4235 Not regulated NC-NC-NC 248521_s_at At5g50630 nodulin family protein similar to nodulin-like protein [Arabidopsis thaliana] GI: 3329368, nodule-specific protein Nlj70 [Lotus japonicus) GI: 3329366 (68418.m06272) 4236 Not regulated NC-NC-NC 248523_s_at At5g50580 SUMO activating enzyme, putative nearly identical to SUMO activating enzyme 1b [Arabidopsis thaliana] GI: 22652852; nearly identical to At5g50680, contains Pfam profile PF00899: ThiF family (68418.m06265) 4237 Not regulated NC-NC-NC 248528_at At5g50760 auxin-responsive family protein similar to auxin-induced protein TGSAUR22 (GI: 10185820) [Tulipe gesneriana] (68418.m06289) 4238 Not regulated NC-NC-NC 248471_at At5g50840 expressed protein (68418.m06298) 4239 Not regulated NC-NC-NC 248473_at At5g50810 mitochondrial import inner membrane translocase (TIM8) identical to mitochondria import inner membrane translocase subunit Tim8 [Arabidopsis thaliana] Swiss-Prot: Q9XGY4; contains Pfam domain, PF02953: Tim10/DDP family zinc finger (68418.m06295) 4240 Not regulated NC-NC-NC 248474_at At5g50850 pyruvate dehydrogenase E1 component beta subunit, mitochondrial/PDHE1-B (PDH2) identical to SP/Q38799 Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor (EC 1.2.4.1) (PDHE1-B) {Arabidopsis thaliana} (68418.m06300) 4241 Not regulated NC-NC-NC 248477_at At5g50900 armadillo/beta-catenin repeat family protein armadillo/beta-catenin-like repeats, Pfam: PF00514 (68418.m06310) 4242 Not regulated NC-NC-NC 248478_at At5g50870 ubiquitin-conjugating enzyme, putative strong similarity to ubiquitin conjugating enzyme [Lycopersicon esculentum] GI: 886679; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme (68418.m06304) 4243 Not regulated NC-NC-NC 248491_at At5g51010 rubredoxin family protein similar to SP|P04170 Rubredoxin (Rd) (Desulfovibrio desulfuricans); contains Pfam profile PF00301: Rubredoxin (68418.m06324) 4244 Not regulated NC-NC-NC 248492_at At5g51040 expressed protein (68418.m06327) 4245 Not regulated NC-NC-NC 248493_at At5g51100 superoxide dismutase [Fe], putative/iron superoxide dismutase, putative similar to Fe-superoxide dismutase precursor [Medicago sativa] gi|16974682|gb|AAL32441 (68418.m06335) 4246 Not regulated NC-NC-NC 248459_at At5g51020 expressed protein similar to unknown protein (pir||S76207) (68418.m06325) 4247 Not regulated NC-NC-NC 248462_at At5g50960 nucleotide-binding family protein similar to Nucleotide-binding protein 1 (NBP 1) (SP: Q9R060) [Mus musculus]; contains Pfam PF00991: ParA family ATPase (68418.m06320) 4248 Not regulated NC-NC-NC 248465_at At5g51200 expressed protein (68418.m06349) 4249 Not regulated NC-NC-NC 248445_at At5g51170 expressed protein (68418.m06344) 4250 Not regulated NC-NC-NC 248449_at At5g51110 expressed protein (68418.m06338) 4251 Not regulated NC-NC-NC 248433_at At5g51400 expressed protein contains Pfam profile PF04749: Protein of unknown function, DUF614 (68418.m06372) 4252 Not regulated NC-NC-NC 248403_at At5g51410 LUC7 N_terminus domain-containing protein similar to cisplatin resistance-associated overexpressed protein [Homo sapiens] GI: 6899846; contains Pfam profile PF03194: LUC7 N_terminus (68418.m06373) 4253 Not regulated NC-NC-NC 248409_at At5g51540 peptidase M3 family protein/thimet oligopeptidase family protein low similarity to SP|Q99797 Mitochondrial intermediate peptidase, mitochondrial precursor (EC 3.4.24.59) {Homo sapiens}; contains Pfam profile PF01432: Peptidase family M3 (68418.m06391) 4254 Not regulated NC-NC-NC 248415_at At5g51620 expressed protein (68418.m06399) 4255 Not regulated NC-NC-NC 248421_at At5g51510 expressed protein (68418.m06388) 4256 Not regulated NC-NC-NC 248422_at At5g51640 leaf senescence protein-related (YLS7) annotation temporarily based on supporting cDNA gi|13122291|dbj|AB047810.1|; identical to cDNA YLS7 leaf-senescence-related protein GI: 13122291 (68418.m06403) 4257 Not regulated NC-NC-NC 248426_at At5g51740 peptidase M48 family protein contains Pfam domain. PF01435: Peptidase family M48 (68418.m06416) 4258 Not regulated NC-NC-NC 248376_at At5g51880 expressed protein (68418.m06434) 4259 Not regulated NC-NC-NC 248379_at At5g51700 RAR1 disease resistance protein (RAR1) Contains a 3 nt micro-exon at exon 2. (68418.m06411) 4260 Not regulated NC-NC-NC 248382_at At5g51890 peroxidase-related similar to peroxidase [Spinacia oleracea] gi|2956707|emb|CAA76376 (68418.m06436) 4261 Not regulated NC-NC-NC 248386_at At5g51940 DNA-directed RNA polymerase II, putative similar to SP|O88828 DNA-directed RNA polymerase II 14.4 kDa polypeptide (EC 2.7.7.6) (RPB6) (RPB14.4) {Rattus norvegicus}; contains Pfam profile PF01192: RNA polymerases K/14 to 18 kDa subunit (68418.m06444) 4262 Not regulated NC-NC-NC 248387_at At5g51960 expressed protein (68418.m06448) 4263 Not regulated NC-NC-NC 248402_at At5g52100 dihydrodipicolinate reductase family protein weak similarity to dihydrodipicolinate reductase [Corynebacterium glutanicum] GI: 311768; contains Pfam profiles PF01113: Dihydrodipicolinate reductase N-terminus, PF05173: Dihydrodipicolinate reductase C- terminus (68418.m06467) 4264 Not regulated NC-NC-NC 248346_at At5g52210 ADP-ribosylation factor, putative similar to art-related protein (ARP) (SP: Q63055){Rattus norvegicus}; contains Pfam domain PF00025: ADP-ribosylation factor family (68418.m06480) 4265 Not regulated NC-NC-NC 248348_at At5g52190 sugar isomerase (SIS) domain-containing protein similar to 6-phospho-3-hexuloisomerase [Mycobacterium gastri] GI: 6899860: contains Pfam profile PF01380: SIS domain (68418.m06478) 4266 Not regulated NC-NC-NC 248349_at At5g52240 cytochrome b5 domain-containing protein similar to SP|P70580 Membrane associated progesterone receptor component 1 {Rattus norvegicus}; contains Pfam profile PF00173: Heme/Steroid binding domain (68418.m06484) 4267 Not regulated NC-NC-NC 248351_at At5g52200 expressed protein (68418.m06479) 4268 Not regulated NC-NC-NC 248336_at At5g52420 expressed protein (68418.m06505) 4269 Not regulated NC-NC-NC 248339_at At5g52520 tRNA synthetase class II (G, H, P and S) family protein similar to SP|P07614 Bifunctional aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate-tRNA ligase); Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline-tRNA lipase)] {Homo sapiens}; contains Pfam profiles PF00587: tRNA synthetase class II core domain (G, H, P, S and T), PF03129: Anticodon binding domain (68418.m06518) 4270 Not regulated NC-NC-NC 248326_at At5g52820 WD-40 repeat family protein/notchless protein, putative similar to notchless [Xenopus laevis] GI: 3687833; contains Pfam PF00400: WD domain, G-beta repeat (8 copies) (68418.m06556) 4271 Not regulated NC-NC-NC 248305_at At5g52560 UDP-N-acetylglucosamine pyrophosphorylase-related contains weak similarity to UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (Swiss-Prot: O74933) [Candida albicans] (68418.m06527) 4272 Not regulated NC-NC-NC 248283_at At5g52920 pyruvate kinase, putative similar to pyruvate kinase isozyme G, chloroplast precursor [Nicotiana tabacum] SWISS-PROT: Q40546 (68418.m06567) 4273 Not regulated NC-NC-NC 248285_at At5g52960 expressed protein similar to unknown protein (pir|S77140) (68418.m06571) 4274 Not regulated NC-NC-NC 248287_at At5g52970 thylakoid lumen 15.0 kDa protein SP: Q9LVV5; similar to unknown protein (pir|S77482) (68418.m08575) 4275 Not regulated NC-NC-NC 248288_at At5g52840 NADH-ubiquinone oxidoreductase-related contains weak similarity to NADH-ubiquinone oxidoreductase 13 kDa-B subunit (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-13Kd-B) (CI-13Kd-B) (Complex I subunit B13) (Swiss-Prot: Q63362) [Rattus norvegicus] (66418.m06559) 4276 Not regulated NC-NC-NC 248300_at At5g53000 protein phosphatase 2A-associated 46 kDa protein/PP2A regulatory subunit (TAP46) identical to PP2A regulatory subunit (46 kDa protein phosphatase 2A-associated protein) (TAP46) [Arabidopsis thaliana] GI: 5107033; contains Pfam profile PF04177: TAP42- like family (68418.m08583) 4277 Not regulated NC-NC-NC 248302_at At5g53160 expressed protein similar to unknown protein (pir||T02893) (68418.m06608) 4278 Not regulated NC-NC-NC 248303_at At5g53170 FtsH protease, putative similar to ATP-dependent metalloprotease FtsH1 GI: 3600100 from [Mus musculus] (68418.m08610) 4279 Not regulated NC-NC-NC 248304_at At5g53180 polypyrimidine tract-binding protein, putative/heterogeneous nuclear ribonucleoprotein, putative similar to Polypyrimidine tract- binding protein 1 (PTB) (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) from (Rattus norvegicus) SP|Q00438, {Homo sapiens} SP|P26599; contains IntePro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (68418.m06611) 4280 Not regulated NC-NC-NC 248250_at At5g53130 cyclic nucleotide-regulated ion channel/cyclic nucleotide-gated channel (CNGC1) almost identical to cyclic nucleotide-regulated ion channel 1 pir: T51354, GI: 11357236 from [Arabidopsis thaliana] (68418.m06604) 4281 Not regulated NC-NC-NC 248258_at At5g53400 nuclear movement family protein contains Pfam profile: PF03593 nuclear movement protein (68418.m06635) 4282 Not regulated NC-NC-NC 248259_at At5g53330 expressed protein (68418.m06628) 4283 Not regulated NC-NC-NC 248264_at At5g53310 myosin heavy chain-related contains weak similarity to Myosin IB heavy chain (Swiss-Prot: P34092) [Dictyostelium discoideum] (68418.m06626) 4284 Not regulated NC-NC-NC 248266_at At5g53440 expressed protein (68418.m06841) 4285 Not regulated NC-NC-NC 248270_at At5g53450 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68418.m06642) 4286 Not regulated NC-NC-NC 248271_at At5g53420 expressed protein (68418.m06639) 4287 Not regulated NC-NC-NC 248276_at At5g53550 transporter, putative similar to iron-phytosiderophore transporter protein yellow stripe 1 [Zea mays] GI: 10770865; contains Pfam profile PF03169: OPT oligopeptide transporter protein (68418.m06654) 4288 Not regulated NC-NC-NC 248242_at At5g53580 aldo/keto reductase family protein contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family (68418.m06657) 4289 Not regulated NC-NC-NC 248243_at At5g53590 auxin-responsive family protein similar to indole-3-acetic acid induced protein ARG7 (SP: P32295) [Vigna radiate] (68418.m06658) 4290 Not regulated NC-NC-NC 248217_at At5g53560 cytochrome b5 isoform 1 identical to SP|Q42342 Cytochrome b5 isoform 1 [Arabidopsis thaliana] (68418.m06655) 4291 Not regulated NC-NC-NC 248219_at At5g53650 expressed protein (68418.m06664) 4292 Not regulated NC-NC-NC 248220_at At5g53540 MSP1 protein, putative/intramitochondrial sorting protein, putative similar to Swiss-Prot: P28737 MSP1 protein (TAT-binding homolog 4) [Saccharomyces cerevisiae]; contains Pfam domain, PF00004: ATPase, AAA family (68418.m06653) 4293 Not regulated NC-NC-NC 248221_at At5g53530 vacuolar protein sorting-associated protein 26, putative/VPS26, putative similar to vacuolar sorting protein 26 [Homo sapiens] GI: 9622852; contains Pfam profile PF03643: Vacuolar protein sorting-associated protein 26 (68418.m08652) 4294 Not regulated NC-NC-NC 248223_at At5g53620 expressed protein (68418.m06661) 4295 Not regulated NC-NC-NC 248234_at At5g53850 haloacid dehalogenase-like hydrolase family protein low similarity to enolase-phosphatase E-1 enzyme [Klebsiella oxytoca] GI: 401712; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase (68418.m06691) 4296 Not regulated NC-NC-NC 248235_at At5g53860 expressed protein (68418.m06697) 4297 Not regulated NC-NC-NC 248238_at At5g53900 expressed protein similar to unknown protein (gb|AAF34833.1) (68418.m06705) 4298 Not regulated NC-NC-NC 248187_at At5g53940 yippee family protein similar to mdgl-1 [Mus musculus] GI: 10441648, Yippee protein [Drosophila melanogaster] GI: 5713279; contains Pfam profile PF03226: Yippee putative zinc-binding protein (68418.m06711) 4299 Not regulated NC-NC-NC 248191_at At5g54130 calcium-binding EF hand family protein contains INTERPRO: IPR002048 calcium-binding EF-hand domain (68418.m06739) 4300 Not regulated NC-NC-NC 248193_at At5g54080 homogentisate 1,2-dioxygenase/homogentisicase/homogentisate oxygenase/homogentisic acid oxidase (HGO) identical to SP|Q9ZRA2 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase) (Homogentisate oxygenase) (Homogentisic acid oxidase) {Arabidopsis thaliana}; contains Pfam profile PF04209: homogentisate 1,2-dioxygenase (68418.m06732) 4301 Not regulated NC-NC-NC 248195_at At5g54110 vesicle-associated membrane family protein/VAMP family protein similar to VAP27 GI: 6688926 [Nicotiana plumbaginifolia] (68418.m06737) 4302 Not regulated NC-NC-NC 248181_at At5g54290 cytochrome c biogenesis protein family low similarity to cytochrome c biogenesis protein CcdA [Paracoccus pantotrophus] GI: 11095328; contains Pfam profile PF02683: Cytochrome C biogenesis protein transmembrane region (68418.m06762) 4303 Not regulated NC-NC-NC 248151_at At5g54270 chlorophyll A-B binding protein/LHCII type III (LHCB3) identical to Lhcb3 protein [Arabidopsis thaliana] GI: 4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein (68418.m06780) 4304 Not regulated NC-NC-NC 248155_at At5g54390 inositol monophosphatase family protein similar to SP|Q42546 3′(2′), 5′-bisphosphate nucleotidase (EC 3.1.3.7) {Arabidopsis thaliana}; contains Pfam profile PF00459: Inositol monophosphatase family; supporting cDNA gi|1354509|gb|U55205.1|ATU55205 (68418.m06773) 4305 Not regulated NC-NC-NC 248158_at At5g54440 expressed protein (68418.m06780) 4306 Not regulated NC-NC-NC 248185_at At5g54430 universal stress protein (USP) family protein low similarity to early nodulin ENOD18 [Vicia faba] GI: 11602747, ER6 protein [Lycopersicon esculentum] GI: 5869654; contains Pfam profile PF00582: universal stress protein family (68418.m06779) 4307 Not regulated NC-NC-NC 248171_at At5g54680 basic helix-loop-helix (bHLH) family protein similar to unknown protein (pir|B71406) (68418.m06809) 4308 Not regulated NC-NC-NC 248173_at At5g54580 RNA recognition motif (RRM)-containing protein low similarity to RNA-binding protein RGP-3 [Nicotiana sylvestris] GI: 1009383; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) (88418.m06794) 4309 Not regulated NC-NC-NC 248174_at At5g54600 50S ribosomal protein L24, chloroplast (CL24) identical to SP|P92959 50S ribosomal protein L24, chloroplast precursor (Arabidopsis thaliana) (68418.m06798) 4310 Not regulated NC-NC-NC 248175_at At5g54640 histone H2A identical to histone H2A Arabidopsis thaliana GI: 7595337 (68418.m06803) 4311 Not regulated NC-NC-NC 248120_at At5g54540 expressed protein (68418.m06790) 4312 Not regulated NC-NC-NC 248124_at At5g54730 expressed protein (68418.m06815) 4313 Not regulated NC-NC-NC 248126_at At5g54760 eukaryotic translation initiation factor SUI1, putative similar to SP|P32911 Protein translation factor SUI1 {Saccharomyces cerevistae}; contains Pfam profile PF01253: Translation initiation factor SUI1 (68418.m06820) 4314 Not regulated NC-NC-NC 248127_at At5g54750 transport protein particle (TRAPP) component Bet3, putative similar to SP|P36149 Transport protein particle 22 kDa subunit (TRAPP 22 kDa subunit) {Saccharomyces cerevisiae}; contains Pfam profile PF04051: Transport protein particle (TRAPP) component, Bet3 (68418.m06818) 4315 Not regulated NC-NC-NC 248132_at At5g54840 GTP-binding family protein similar to SP|P87027 Septum-promoting GTP-binding protein 1 (GTPase spg1)(Sid3 protein) {Schizosaccharomyces pombe} (68418.m06830) 4316 Not regulated NC-NC-NC 248134_at At5g54860 integral membrane transporter family protein contains 10 transmembrane domains; contains Pfam PF03092: BT1 family; contains TIGRFAMS TIGR00788: folate/biopterin transporter, similar to high affinity folic acid/methotrexate transporter 5 (GI: 21898554) [Leishmania tarentolae] (68418.m06634) 4317 Not regulated NC-NC-NC 248139_at At5g54970 expressed protein (68418.m06846) 4318 Not regulated NC-NC-NC 248140_at At5g54980 integral membrane family protein similar to unknown protein (gb|AAD50013.1); contains TIGRFAM TIGR01589: plant integral membrane protein TIGR01569; contains Pfam PF04535: Domain of unknown function (DUF588) (68418.m06847) 4319 Not regulated NC-NC-NC 248142_at At5g55030 expressed protein (68418.m06855) 4320 Not regulated NC-NC-NC 248144_at At5g54800 glucose-8-phosphate/phosphate translocator, putative identical to glucose 8 phosphate/phosphate translocator [Arabidopsis thaliana] gi|7229675|gb|AAF42936 (68418.m06826) 4321 Not regulated NC-NC-NC 248147_at At5g54900 RNA-binding protein 45 (RBP45), putative contains similarity to polyadenylate-binding protein 5 (68418.m06838) 4322 Not regulated NC-NC-NC 248149_at At5g54855 pollen Ole e 1 allergen and extensin family protein contains Pfam domain, PF01190: Pollen proteins Ole e I family (68418.m06833) 4323 Not regulated NC-NC-NC 248115_at At5g54870 expressed protein strong similarity to unknown protein (pir||T04825) (68418.m06835) 4324 Not regulated NC-NC-NC 248117_at At5g55000 potassium channel tetramerisation domain-containing protein/pentapeptide repeat-containing protein contains Pfam profiles PF02214: K+ channel tetramerisation domain, PF00805: Pentapeptide repeats (8 copies) (68418.m06849) 4325 Not regulated NC-NC-NC 248087_at At5g55060 expressed protein (68418.m06862) 4326 Not regulated NC-NC-NC 248091_at At5g55120 expressed protein strong similarity to unknown protein (pir||T04808) (68418.m06871) 4327 Not regulated NC-NC-NC 248092_at At5g55170 small ubiquitin-like modifier 3 (SUMO) similar to SP|O13351 Ubiquitin-like protein smt3/pmt3 (Schizosaccharomyces pombe); identical to cDNA small ubiquitin-like modifier 3 (SUMO) GI: 22652845 (68418.m06878) 4328 Not regulated NC-NC-NC 248093_at At5g55210 expressed protein similar to unknown protein (pir||T04913) (68418.m06882) 4329 Not regulated NC-NC-NC 248094_at At5g55220 trigger factor type chaperone family protein contains Pfam profiles PF05897: Bacterial trigger factor protein (TF), PF05698: Bacterial trigger factor protein (TF) C-terminus, PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type (68418.m06883) 4330 Not regulated NC-NC-NC 248098_at At5g55290 ATP synthase subunit H family protein contains weak similarity to Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H subunit) (Vacuolar proton pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2 kDa membrane accessory protein) (Swiss- Prot: P81103) [Bos taurus]: contains Pfam profile PF05493: ATP synthase subunit H (68418.m06890) 4331 Not regulated NC-NC-NC 248099_at At5g55300 DNA topoisomerase I identical to Swiss-Prot: P30181 DNA topoisomerase I [Arabidopsis thaliana] (68418.m06891) 4332 Not regulated NC-NC-NC 248101_at At5g55200 co-chaperone grpE protein, putative similar to chaperone GrpE type 2 [Nicotiana tabacum] GI: 3851640; contains Pfam profile PF01025: co-chaperone GrpE (68418.m06881) 4333 Not regulated NC-NC-NC 248102_at At5g55140 ribosomal protein L30 family protein contains similarity to 50S ribosomal protein L30 (68418.m06875) 4334 Not regulated NC-NC-NC 248103_at At5g55160 small ubiquitin-like modifier 2 (SUMO) similar to ubiquitin-like protein SMT3 SP: P55852 from [Arabidopsis thaliana]; identical to cDNA small ubiquitin-like modifier 2 (SUMO) GI: 22652843; contains Pfam profile PF00240: Ubiquitin family (68418.m06877) 4335 Not regulated NC-NC-NC 248105_at At5g55280 cell division protein FtsZ, chloroplast, putative (FTSZ) identical to SP|Q42545 Cell division protein ftsZ homolog, chloroplast precursor {Arabidopsis thaliana}; similar to FtsZ1 [Tagetes erecta] GI: 8898086; contains Pfam profiles PF00091: Tubulin/FtsZ family, GTPase domain, PF03953: Tubulin/FtsZ family, C-terminal domain (68418.m06889) 4336 Not regulated NC-NC-NC 248107_at At5g55190 Ras-related GTP-binding protein (RAN3) identical to atran3 [Arabidopsis thaliana] GI: 2058280 (68418.m06880) 4337 Not regulated NC-NC-NC 248108_at At5g55130 molybdenum cofactor synthesis protein 3/molybdopterin synthase sulphurylase (CNX5) identical to SP|O9ZNW0 Molybdenum cofactor synthesis protein 3 (Molybdopterin synthase sulfurylase) (MPT synthase sulfurylase) {Arabidopsis thaliana}; contains Pfam profiles PF00899: ThiF family, PF00581: Rhodanese-like domain, PF05237: MoeZ/MoeB domain (68418.m06872) 4338 Not regulated NC-NC-NC 248109_at At5g55310 DNA topoisomerase I, putative similar to Swiss-Prot: P30181 DNA topoisomerase I [Arabidopsis thaliana] (68418.m06893) 4339 Not regulated NC-NC-NC 248080_at At5g55380 membrane bound O-acyl transferase (MBOAT) family protein/wax synthase-related similar to wax synthase [gi: 5020219] from Simmondsia chinensis (68418.m06900) 4340 Not regulated NC-NC-NC 248056_at At5g55500 beta-(1,2)-xylosyltransferase (XYLT) identical to SP|Q9LDH0 (68418.m06912) 4341 Not regulated NC-NC-NC 248058_at At5g55530 C2 domain-containing protein low similarity to cold-regulated gene SRC2 [Glycine max] GI: 2055230; contains Pfam profile PF00168: C2 domain (68418.m06916) 4342 Not regulated NC-NC-NC 248062_at At5g55450 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 (68418.m06907) 4343 Not regulated NC-NC-NC 248068_at At5g55610 expressed protein (68418.m06933) 4344 Not regulated NC-NC-NC 248074_at At5g55730 fasciclin-like arabinogalactan-protein (FLA1) identical to gi|13377776||AAK20857|13377775|gb|AF333970 (68418.m08947) 4345 Not regulated NC-NC-NC 248079_at At5g55790 expressed protein; expression supported by MPSS (68418.m06953) 4346 Not regulated NC-NC-NC 248025_at At5g55850 nitrate-responsive NOI protein, putative similar to nitrate-induced NOI protein [Zea mays] GI: 2642213 (68418.m06960) 4347 Not regulated NC-NC-NC 248026_at At5g55710 expressed protein (68418.m06945) 4348 Not regulated NC-NC-NC 248028_at At5g55620 expressed protein similar to unknown protein (gb|AAF04428.1) (68418.m06935) 4349 Not regulated NC-NC-NC 248031_at At5g55640 expressed protein (68418.m06938) 4350 Not regulated NC-NC-NC 248041_at At5g55940 expressed protein contains Pfam PF03665: Uncharacterised protein family (UPF0172) (68418.m06977) 4351 Not regulated NC-NC-NC 248042_at At5g55960 expressed protein (68418.m06979) 4352 Not regulated NC-NC-NC 248044_at At5g56020 expressed protein (68418.m06990) 4353 Not regulated NC-NC-NC 247994_at At5g56140 KH domain-containing protein (68418.m07003) 4354 Not regulated NC-NC-NC 247996_at At5g56170 expressed protein contains similarity to GPI-anchored protein (68418.m07007) 4355 Not regulated NC-NC-NC 247997_at At5g56180 actin-related protein, putative (ARP8) strong similarity to actin-related protein BA (ARP8) [Arabidopsis thaliana] GI: 21427473; contains Pfam profile PF00022: Actin; supporting cDNA gi|21427470|gb|AF507916.1|(68418.m07008) 4356 Not regulated NC-NC-NC 248000_at At5g56190 WD-40 repeat family protein contains 3 (2 significant) WD-40 repeats (PF0400); similar to beta transducin-like protein HET-E2C*40 (GI: 17225206) [Podospora anserina] (68418.m07010) 4357 Not regulated NC-NC-NC 248005_at At5g56240 expressed protein (68418.m07018) 4358 Not regulated NC-NC-NC 248007_at At5g56260 dimethylmenaquinone methyltransferase family protein similar to bacterial S-adenosylmethionine: 2-demethytmenaquinone methyltransferases; contains Pfam profile PF03737: Dimethylmenaquinone methyltransferase (68418.m07021) 4359 Not regulated NC-NC-NC 248010_at At5g56290 peroxisomal targeting signal type 1 receptor (PEX5) identical to GI: 3603353; contains Pfam profile PF00515 TPR Domain (68418.m07026) 4360 Not regulated NC-NC-NC 248014_at At5g56340 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) (68418.m07032) 4361 Not regulated NC-NC-NC 247989_at At5g56350 pyruvate kinase, putative similar to pyruvate kinase, cytosolic isozyme [Nicotiana tabacum] SWISS-PROT: Q42954 (68418.m07033) 4362 Not regulated NC-NC-NC 247963_at At5g56590 glycosyl hydrolase family 17 protein similar to elicitor inducible chitinase Nt-SubE76 GI: 11071974 from [Nicotiana tabacum] (68418.m07063) 4363 Not regulated NC-NC-NC 247964_at At5g56600 profilin 5 (PRO5) (PRF3) identical to SP|Q9FE63 Profilin 5 {Arabidopsis thaliana} (68418.m07065) 4364 Not regulated NC-NC-NC 247968_at At5g56670 40S ribosomal protein S30 (RPS30C) (68418.m07074) 4365 Not regulated NC-NC-NC 247983_at At5g56630 phosphofructokinase family protein similar to phosphofructokinase [Amycolatopsis methanotica] GI: 17432243; contains Pfam profile PF00365: Phosphofructokinase (68418.m07070) 4366 Not regulated NC-NC-NC 247985_at At5g56790 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68418.m07087) 4367 Not regulated NC-NC-NC 247987_at At5g56900 CwfJ-like family protein/zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar), PF04677: Protein similar to CwfJ C-terminus 1, PF04678: Protein similar to CwfJ C-terminus 2 (68418.m07100) 4368 Not regulated NC-NC-NC 247988_at At5g56910 expressed protein (68418.m07104) 4389 Not regulated NC-NC-NC 247930_at At5g57060 expressed protein (68418.m07122) 4370 Not regulated NC-NC-NC 247931_at At5g57040 lactoylglutathione lyase family protein/glyoxalase I family protein contains Pfam PF00903: glyoxalase family protein (68418.m07120) 4371 Not regulated NC-NC-NC 247934_at At5g57000 expressed protein similar to unknown protein (gb|AAF21159.1) (68418.m07114) 4372 Not regulated NC-NC-NC 247935_at At5g56940 ribosomal protein S16 family protein contains Pfam profile PF00886: ribosomal protein S16 (68418.m07108) 4373 Not regulated NC-NC-NC 247936_at At5g57030 lycopene epsilon cyclase identical to lycopene epsilon cyclase [GI: 1399181] (68418.m07118) 4374 Not regulated NC-NC-NC 247943_at At5g57170 macrophage migration inhibitory factor family protein/MIF family protein contains Pfam profile: PF01187 Macrophage migration inhibitory factor(MIF) (68418.m07141) 4375 Not regulated NC-NC-NC 247945_at At5g57150 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain (68418.m08531) 4376 Not regulated NC-NC-NC 247950_at At5g57230 expressed protein (68418.m07150) 4377 Not regulated NC-NC-NC 247926_at At5g57280 expressed protein (68418.m07156) 4378 Not regulated NC-NC-NC 247929_at At5g57330 aldose 1-epimerase family protein contains Pfam profile PF01263 Aldose 1-epimerase (68418.m07161) 4379 Not regulated NC-NC-NC 247898_at At5g57360 F-box family protein/LOV kelch protein 1 (LKP1) E3 ubiquitin ligase SCF complex F-box subunit; identical to clock-associated PAS protein ZTL; ZEITLUPE GI: 7839456, LOV kelch protein 1 GI: 11610573, Adagio 1 GI: 13487068 from [Arabidopsis thaliana]; contains Pfam profile PF01344: Kelch motif; identical to cDNA Adagio 1 (ADO1) GI: 13487067; identical to cDNA LKP1 mRNA for LOV kelch protein 1, GI: 11610572 (68418.m07168) 4380 Not regulated NC-NC-NC 247899_at At5g57345 expressed protein (68418.m07164) 4381 Not regulated NC-NC-NC 247901_at At5g57300 UbiE/COQ5 methyltransferase family protein similar to ubiquinone biosynthesis methyltransferase COQ5 [Saccharomyces cerevisia][SP|P49017], ubiquinone/menaquinone biosynthesis methyltransferase ubiE [Escherichia coli][SP|P27851]; contains Pfam profile PF01209: methlytransferase, UbiE/COQ5 family (68418.m07158) 4382 Not regulated NC-NC-NC 247923_at At5g57490 porin, putative similar to 36 kDA porin II [Solanum tuberosum] GI: 515360; contains Pfam profile PF01459: Eukaryotic porin (68418.m07184) 4383 Not regulated NC-NC-NC 247870_at At5g57580 calmodulin-binding protein similar to calmodulin-binding protein TCB60 GI: 1698548 from [Nicotiana tabacum] (68418.m07194) 4384 Not regulated NC-NC-NC 247884_at At5g57800 CER1 protein, putative (WAX2) similar to maize glossy 1 homolog GI: 2213843 from [Oryza sativa]; contains Pfam profile PF01598: Sterol desaturase (68418.m07228) 4385 Not regulated NC-NC-NC 247886_at At5g57850 aminotransferase class IV family protein contains Pfam profile: PF01083 aminotransferase class IV (68418: m07234) 4386 Not regulated NC-NC-NC 247889_at At5g57930 expressed protein (68418.m07248) 4387 Not regulated NC-NC-NC 247894_at At5g58000 phosphatase-related weak similarity to CTD phosphatase-like 3 [Arabidopsis thaliana] GI: 22212705; contains Pfam profiles PF02453: Reticulon, PF00533: BRCA1 C Terminus (BRCT) domain, PF03031: NLI interacting factor (68418.m07256) 4388 Not regulated NC-NC-NC 247863_at At5g57900 SKP1/ASK1 interacting partner 1 (SKIP1)/SCF (Skp1-cullin-F-box) ubiquitin ligase identical to SKP1 interacting partner 1 GI: 10716947 from [Arabidopsis thaliana], PMID: 11387208 (68418.m07243) anthranilate synthase beta subunit, putative strong similarity to anthranilate synthase beta chain GI: 403434 [Arabidopsis thaliana] 4389 Not regulated NC-NC-NC 247864_s_at At5g57890 (68418.m07242) 4390 Not regulated NC-NC-NC 247865_at At5g57815 cytochrome c oxidase subunit 6b, putative similar to subunit 6b of cytochrome c oxidase [Arabidopsis thaliana] gi|6518353|dbj|BAA67833 (68418.m07230) 4391 Not regulated NC-NC-NC 241835_at At5g57910 expressed protein similar to unknown protein (emb|CAB79781.1) (68418.m07244) 4392 Not regulated NC-NC-NC 247836_at At5g57860 ubiquitin family protein contains Pfam profile PF00240: Ubiquitin family (68418.m07235) 4393 Not regulated NC-NC-NC 247838_at At5g57990 ubiquitin-specific protease 23, putative (UBP23) identical to GI: 11993486 (68418.m07255) 4394 Not regulated NC-NC-NC 247840_at At5g58020 expressed protein contains PF04641: Protein of unknown function, DUF602 (68418.m07260) 4395 Not regulated NC-NC-NC 247842_at At5g58030 transport protein particle (TRAPP) component Bet3 family protein very strong similarity to SPP30 (Solanum pollinated pistil) [Solanum chacoense] GI: 4959712; contains Pfam profile PF04051: Transport protein particle (TRAPP) component, Bet3 (68418.m07261) 4396 Not regulated NC-NC-NC 247845_at At5g58090 glycosyl hydrolase family 17 protein similar to 3-glucanase GI: 18483232 from [Sorghum bicolor] (68418.m07269) 4397 Not regulated NC-NC-NC 247847_at At5g58110 expressed protein predicted proteins, Homo sapiens and Drosophila melanogaster (68418.m07271) 4398 Not regulated NC-NC-NC 247849_at At5g58130 RNA recognition motif (RRM)-containing protein (68418.m07273) 4399 Not regulated NC-NC-NC 247854_at At5g58200 expressed protein (68418.m07285) 4400 Not regulated NC-NC-NC 247858_at At5g58220 expressed protein (68418.m07289) 4401 Not regulated NC-NC-NC 247860_at At5g58240 bis(5′-adenosyl)-triphosphatase, putative similar to bis(5′-adenosyl)-triphosphatase (Diadenosine 5′,5′″-P1,P3-triphosphate hydrolase, Dinucleosidetriphosphatase, AP3A hydrolase, AP3AASE. Fragile histidine triad protein) [Homo sapiens] Swiss- Prot: P49789 (68418.m07291) 4402 Not regulated NC-NC-NC 247862_at At5g58250 expressed protein (68418.m07293) 4403 Not regulated NC-NC-NC 247806_at At5g58270 mitochondrial half-ABC transporter (STA1) identical to half-molecule ABC transporter ATM3 GI: 9964121 from [Arabidopsis thaliana]; almost identical to mitochondrial half-ABC transporter STA1 GI: 9187883 from [Arabidopsis thaliana]; identical to cDNA mitochondrial half-ABC transporter (STA1 gene)GI: 9187882 (68418.m07295) 4404 Not regulated NC-NC-NC 247810_at At5g58290 26S proteasome AAA-ATPase subunit (RPT3) identical to 26S proteasome AAA-ATPase subunit RPT3 GI: 6652882 from [Arabidopsis thaliana] (68418.m07297) 4405 Not regulated NC-NC-NC 247811_at At5g58430 exocyst subunit EXO70 family protein leucine zipper-containing protein, Lycopersicon esculentum, PIR: S21495; contains Pfam domain PF03081: Exo70 exocyst complex subunit; similar to rexo70 (GI: 2827160) {Rattus norvegicus} (68418.m07317) 4406 Not regulated NC-NC-NC 247812_at At5g58390 peroxidase, putative similar to peroxidase [Nicotiana tabacum] gi|5381253|dbj|BAA82306 (68418.m07312) 4407 Not regulated NC-NC-NC 247813_at At5g58330 malate dehydrogenase [NADP], chloroplast, putative strong similiarity to chloroplast NADP-dependent malate dehydrogenase (EC 1.1.1.82) SP|O48902 {Medicago sativa}, SP|P21528 {Pisum sativum}, SP|Q05145 {Mesembryanthemum crystallinum}, SP|P46489 {Flaveria bidentis}, [Flaveria trinervia] GI: 726334, SP|P17606I {Sorghum bicolor}; contains InterPro entry IPR001236: Lactate/malate dehydrogenase (68418.m07302) 4408 Not regulated NC-NC-NC 247815_at At5g58420 40S ribosomal protein S4 (RPS4D) ribosomal protein S4, Arabidopsis thaliana, PIR: T48480 (68418.m07315) 4409 Not regulated NC-NC-NC 247817_at At5g58375 expressed protein (68418.m07310) 4410 Not regulated NC-NC-NC 247819_at At5g58350 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68418.m07306) 4411 Not regulated NC-NC-NC 247821_at At5g58230 WD-40 repeat protein (MSI1) contains 6 WD-40 repeats (PF0400); identical to WD-40 repeat protein (SP: O22467) [Arabidopsis thaliana] (68418.m07290) 4412 Not regulated NC-NC-NC 247823_at At5g58450 expressed protein predicted proteins from D. melanogaster, C. elegans and S. pombe (68418.m07320) 4413 Not regulated NC-NC-NC 247825_at At5g58470 zinc finger (Ran-binding) family protein weak similarity to SP|Q01844 RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma breakpoint region 1 protein) {Homo sapiens}; contains Pfam profiles PF00078: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF00641: Zn-finger in Ran binding protein and others (68418.m07322) 4414 Not regulated NC-NC-NC 247826_at At5g58480 glycosyl hydrolase family 17 protein similar to elicitor inducible chitinase Nt-SubE76 GI: 11071974 from [Nicotiana tabacum] (68418.m07324) 4415 Not regulated NC-NC-NC 247834_at At5g58490 cinnamoyl-CoA reductase family similar to cinnamoyl-CoA reductase from Pinus taeda [GI: 17978649], Eucalyptus gunnii [GI: 2058311] (68418.m07325) 4416 Not regulated NC-NC-NC 247800_at At5g58570 expressed protein (68418.m07337) 4417 Not regulated NC-NC-NC 247771_at At5g58590 Ran-binding protein 1, putative/RanBP1, putative strong similarity to Ran binding proteins from Arabidopsis thaliana atranbp1a [Arabidopsis thaliana] GI: 2058282, atranbp1b [Arabidopsis thaliana] GI: 2058284; contains Pfam profile PF00638: RanBP1 domain (68418.m07342) 4418 Not regulated NC-NC-NC 247776_at At5g58700 phosphoinositide-specific phospholipase C family protein contains Pfam profile: PF00388 phosphatidylinositol-specific phospholipase C (68418.m07354) 4419 Not regulated NC-NC-NC 247777_at At5g58740 nuclear movement family protein contains Pfam profile: PF03593 nuclear movement protein (68418.m07358) 4420 Not regulated NC-NC-NC 247783_at At5g58800 quinone reductase family protein similar to 1,4-benzoquinone reductase [Phanerochaste chrysosporium][GI: 4454993]; similar to Trp repressor binding protein [Escherichia coli][SP|P30849]; contains flavodoxin domain PF00258 (68418.m07367) 4421 Not regulated NC-NC-NC 247786_at At5g58600 expressed protein various predicted proteins, Arabidopsis thaliana and Oryza sativa (68418.m07343) 4422 Not regulated NC-NC-NC 247787_at At5g58640 selenoprotein-related contains weak similarity to Selenoprotein W (Swiss-Prot: P49904) [Rattus norvegicus] (68418.m07348) 4423 Not regulated NC-NC-NC 247788_at At5g58730 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase (68418.m07357) 4424 Not regulated NC-NC-NC 247792_at At5g58787 zinc finger (C3HC4-type RING finger) family protein similar to MTD2 [Medicago truncatula] GI: 9294812; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) (68418.m07365) 4425 Not regulated NC-NC-NC 247793_at At5g58650 expressed protein (68418.m07349) 4426 Not regulated NC-NC-NC 247794_at At5g58670 phosphorinositide-specific phospholipase C (PLC1) identical to phosphoinositide specific phospholipase C [Arabidopsis thaliana] GI: 902923 (68418.m07351) 4427 Not regulated NC-NC-NC 247770_at At5g58930 expressed protein contains Pfam PF05340: Protein of unknown function (DUF740) (68418.m07382) 4428 Not regulated NC-NC-NC 247745_at At5g59030 copper transporter 1 (COPT1) nearly identical to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis thaliana} (68418.m07395) 4429 Not regulated NC-NC-NC 247761_at At5g59160 serine/threonine protein phosphatase PP1 isozyme 2 (TOPP2) identical to SP|P48482 Serine/threonine protein phosphatase PP1 isozyme 2 (EC 3.1.3.16) {Arabidopsis thaliana} (68418.m07414) 4430 Not regulated NC-NC-NC 247709_at At5g59250 sugar transporter family protein similar to D-xylose-H+ symporter from Lactobacillus brevis GI: 2895856, sugar-porter family protein 2 [Arabidopsis thaliana] GI: 14585701; contains Pfam profile PF00083: major facilitator superfamily protein (68418.m07425) 4431 Not regulated NC-NC-NC 247720_at At5g59290 UDP-glucuronic acid decarboxylase (UXS3) identical to UDP-glucuronic acid decarboxylase [Arabidopsis thaliana] GI: 14595666; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family; identical to cDNA UDP-glucuronic acid decarboxylase (UXS3) GI: 14595665 (68418.m07429) 4432 Not regulated NC-NC-NC 247721_at At5g59140 SKP1 family protein similar to elongin C. Drosophila melanogaster, GI: 2780365 PIR: JC5794; contains Pfam profile PF01466: Skp1 family, dimerisation domain (68418.m07412) 4433 Not regulated NC-NC-NC 247722_at At5g59150 Ras-related GTP-binding protein, putative similar to Ras-related protein Rab11C SP: Q40193 from [Lotus japonicus] (68418.m07413) 4434 Not regulated NC-NC-NC 247725_at At5g59410 expressed protein (68418.m07445) 4435 Not regulated NC-NC-NC 247705_at At5059460 scarecrow-like transcription factor 11 (SCL11) identical to cDNA scarecrow-like 11 (SCL11) mRNA, partial cds gi: 4580526 (68418.m07452) 4436 Not regulated NC-NC-NC 247677_at At5g59420 oxysterol-binding family protein similar to SP|P16258 Oxysterol-binding protein 1 {Oryctolagus cuniculus}; contains Pfam profile PF01237: Oxysterol-binding protein (68418.m07446) 4437 Not regulated NC-NC-NC 247678_at At5g59520 zinc transporter (ZIP2) identical to zinc transporter ZIP2 [Arabidopsis thaliana] gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID: 11500563 (68418.m07459) 4438 Not regulated NC-NC-NC 247679_at At5g59540 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to desacetoxyvindoline-4-hydroxylase [Catharanthus roseus] GI: 2352612; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family (68418.m07461) 4439 Not regulated NC-NC-NC 247689_at At5g59770 expressed protein (68418.m07491) 4440 Not regulated NC-NC-NC 247692_s_at At5g59690 histone H4 identical to histone H4 from Lycopersicon esculentum GI: 297150, Lolium temulentum SP|P02306, Acropora formosa GI: 455652, Citrus jambhiri GI: 16797797 (68418.m07483) 4441 Not regulated NC-NC-NC 247694_at At5g59750 riboflavin biosynthesis protein, putative similar to SP|P50855 Riboflavin biosynthesis protein ribA [Includes: GTP cyclohydrolase II (EC 3.5.4.25); 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase)] {Actinobacillus pleuropneumoniae}; contains Pfam profiles PF00925: GTP cyclohydrolase II, PF00926: 3,4-dihydroxy-2-butanone 4-phosphate synthase (68418.m07489) 4442 Not regulated NC-NC-NC 247699_at At5g59840 Ras-related GTP-binding family protein contains Pfam profile: PF00071 Ras family (68418.m07503) 4443 Not regulated NC-NC-NC 247650_at At5g59960 expressed protein (68418.m07520) 4444 Not regulated NC-NC-NC 247652_at At5g59910 histone H2B nearly identical to histone H2B Arabidopsis thaliana GI: 2407802; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 (68418.m07513) 4445 Not regulated NC-NC-NC 247654_at At5g59850 40S ribosomal protein S15A (RPS15aF) cytoplasmic ribosomal protein S15a, Arabidopsis thaliana, EMBL: ATAF1412 (68418.m07505) 4446 Not regulated NC-NC-NC 247656_at At5g59890 actin-depolymerizing factor 4 (ADF4) identical to SP|Q9ZSK3 Actin-depolymerizing factor 4 (ADF-4) (AtADF4) {Arabidopsis thaliana} (68418.m07510) 4447 Not regulated NC-NC-NC 247658_at At5g59880 actin-depolymerizing factor 3 (ADF3) identical to SP|Q9ZSK4 Actin-depolymerizing factor 3 (ADF 3) (AtADF3) {Arabidopsis thaliana} (68418.m07508) 4448 Not regulated NC-NC-NC 247624_at At5g60160 aspartyl aminopeptidase, putative similar to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21) {Homo sapiens}; contains Pfam profile PF02127: Aminopeptidase I zinc metalloprotease (M18) (68418.m07542) 4449 Not regulated NC-NC-NC 247626_at At5g60300 lectin protein kinase family protein contains Pfam domains, PF00069: Protein kinase domain and PF00139: Legume lectins beta domain (68418.m07557) 4450 Not regulated NC-NC-NC 247627_at At5g60360 cysteine proteinase, putative/AALP protein (AALP) identical to AALP protein GI: 7230640 from [Arabidopsis thaliana]; similar to barley aleurain (68418.m07568) 4451 Not regulated NC-NC-NC 247630_at At5g60420 4452 Not regulated NC-NC-NC 247632_at At5g60460 sec61beta family protein similar to SP|P52870 Protein transport protein SEC61 beta 1 subunit {Saccharomyces cerevisiae}; contains Pfam profile PF03911: Sec61beta family (68418.m07583) 4453 Not regulated NC-NC-NC 247638_at At5g60490 fasciclin-like arabinogalactan-protein (FLA12) (68418.m07586) 4454 Not regulated NC-NC-NC 247641_at At5g60540 SNO glutamine amidotransferase family protein similar to pyridoxine synthesis protein PDX2 [Cercospora nicotianae] GI: 9954418; contains Pfam profile PF01174: SNO glutamine amidotransferase family (68418.m07591) 4455 Not regulated NC-NC-NC 247644_s_at At5g60390 elongation factor 1-alpha/EF-1-alpha identical to SWISS-PROT: P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana] (68418.m07574) 4456 Not regulated NC-NC-NC 247583_at At5g60750 CAAX amino terminal protease family protein contains Pfam profile PF02517 CAAX amino terminal protease family protein (68418.m07622) 4457 Not regulated NC-NC-NC 247586_at At5g60660 major intrinsic family protein/MIP family protein similar to mipC protein GI: 1657948 from [Mesembryanthemum crystallinum] (68418.m07613) 4458 Not regulated NC-NC-NC 247587_at At5g60620 phospholipid/glycerol acyltransferase family protein contains Pfam PF01553: Acyltransferase (68418.m07608) 4459 Not regulated NC-NC-NC 247598_at At5g60870 regulator of chromosome condensation (RCC1) family protein weak similarity to UVB-resistance protein UVR8 [Arabidopsis thaliana] GI: 5478530; contains Pfam profile PF00415: Regulator of chromosome condensation (RCC1) (68418.m07635) 4460 Not regulated NC-NC-NC 247604_at At5g60950 phytochelatin synthetase-related contains Pfam profile PF04833: Phytochelatin synthetase-like conserved region (68418.m07646) 4461 Not regulated NC-NC-NC 247608_at At5g60990 DEAD/DEAH box helicase, putative (RH10) probable replication protein A1, Oryza sativa, EMBL: AF009179 (68418.m07651) 4462 Not regulated NC-NC-NC 247551_at At5g60980 nuclear transport factor 2 (NTF2) family protein/RNA recognition motif (RRM)-containing protein G3BP ras-GTPase-activating protein SH3-domain binding protein, Mus musculus, EMBL: MMU65313 (68418.m07649) 4463 Not regulated NC-NC-NC 247563_at At5g61130 glycosyl hydrolase family protein 17 similar to beta-1,3-glucanase GI: 15150341 from [Carnellia sinensis]; C-terminal homology only (68418.m07669) 4464 Not regulated NC-NC-NC 247565_at At5g61150 leo1-like family protein weak similarity to SP|P38439 LEO1 protein {Saccharomyces cerevisiae}; contains Pfam profile PF04004: Leo1-like protein; supporting cDNA gi|21929714|gb|AF490422.1| (68418.m07671) 4465 Not regulated NC-NC-NC 247571_at At5g61210 SNAP25 homologous protein SNAP33 (SNAP33) (SNAP33B)/synaptosomal-associated protein SNAP25-like 1/snap25a identical to SNAP25 homologous protein SNAP33 (AtSNAP33) (Synaptosomal-associated protein SNAP25-like 1) (SNAP-25 like protein 1) (Snap25a) (Swiss-Prot: Q9S7P9) [Arabidopsis thaliana] (68418.m07678) 4466 Not regulated NC-NC-NC 247572_at At5g61220 complex 1 family protein/LVR family protein contains Pfam PF05347: Complex 1 protein (LYR family) (68416.m07679) 4467 Not regulated NC-NC-NC 247547_at At5g61380 expressed protein (68418.m07699) 4468 Not regulated NC-NC-NC 247520_at At5g61310 cytochrome c oxidase subunit Vc, putative/COX5C, putative similar to cytochrome c oxidase subunit 5c [Helianthus annuus] GI: 18409602; contains Pfam profile PF05799: Cytochrome c oxidase subunit Vc (COX5C) (68418.m07693) 4469 Not regulated NC-NC-NC 247522_at At5g61340 expressed protein (68418.m07697) 4470 Not regulated NC-NC-NC 247523_at At5g61410 ribulose-phosphate 3-epimerase, chloroplast, putative/pentose-5-phosphate 3-epimerase, putative strong similarity to SP|Q43157 Ribulose-phosphate 3-epimerase, chloroplast precursor (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E) {Spinacia oleracea}; contains Pfam profile PF00834: Ribulose-phosphate 3 epimerase family (68418.m07704) 4471 Not regulated NC-NC-NC 247532_at At5g61560 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68418.m07725) 4472 Not regulated NC-NC-NC 247534_at At5g61580 phosphofructokinase family protein similar to phosphofructokinase [Amycolatopsis methanolica] GI: 17432243; contains Pfam profile PF00385: Phosphofructokinase (68418.m07727) 4473 Not regulated NC-NC-NC 247544_at At5g61670 expressed protein (68418.m07737) 4474 Not regulated NC-NC-NC 247513_at At5g61510 NADP-dependent oxidoreductase, putative similar to zeta-crystallin homolog TED2 from Zinnia elegans [gi: 531096]; contains Pfam zinc-binding dehydrogenase domain PF00107 (68418.m07718) 4475 Not regulated NC-NC-NC 247493_at At5g61900 copine BONZAI1 (BON1) nearly identical to BONZAI1 [Arabidopsis thaliana] GI: 15487382; contains Pfam profile PF00168: C2 domain (68418.m07766) 4476 Not regulated NC-NC-NC 247496_at At5g61840 exostosin family protein contains Pfam profile: PF03016 exostosin family; supported by cDNA gi|23821293|dbj|AB080693.1|; (68418.m07759) 4477 Not regulated NC-NC-NC 247486_at At5g62140 expressed protein (68418.m07799) 4478 Not regulated NC-NC-NC 247487_at At5g62150 peptidoglycan-binding LysM domain-containing protein contains Pfam profile PF01476: LysM domain (68418.m07800) 4479 Not regulated NC-NC-NC 247459_at At5g62200 embryo-specific protein-related contains weak similarity to embryo-specific protein 3 (GI: 3335171) [Arabidopsis thaliana] (68418.m07809) 4480 Not regulated NC-NC-NC 247460_at At5g62050 OXA1 protein (OXA1) identical to AtOXA1 [Arabidopsis thaliana] GI: 6624207 (68418.m07788) 4481 Not regulated NC-NC-NC 247477_at At5g62340 invertase/pectin methylesterase inhibitor family protein similar to SP|Q42534 Pectinesterase 2 precursor (EC 3.1.1.11) (Pectin methylesterase 2) (PE 2) {Arabidopsis thaliana}; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor (68418.m07825) 4482 Not regulated NC-NC-NC 247449_at At5g62290 nucleotide-sensitive chloride conductance regulator (ICIn) family protein contains PF03517: Nucleotide-sensitive chloride conductance regulator (ICIn) (68418.m07820) 4483 Not regulated NC-NC-NC 247450_at At5g62350 invertase/pectin methylesterase inhibitor family protein/DC 1.2 homolog (FL5-2I22) similar to SP|Q42534 Pectinesterase 2 precursor (EC 3.1.1.11) (Pectin methylesterase 2) (PE 2) {Arabidopsis thaliana}; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor, FL5-2I22 mRNA for DC 1.2 homolog, partial cds GI: 11127598 (68418.m07826) 4484 Not regulated NC-NC-NC 247453_at At5g62440 expressed protein (68418.m07837) 4485 Not regulated NC-NC-NC 247427_at At5g62580 expressed protein (68418.m07855) 4486 Not regulated NC-NC-NC 247428_at At5g62590 4487 Not regulated NC-NC-NC 247430_at At5g62610 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain (68418.m07857) 4488 Not regulated NC-NC-NC 247434_at At5g62575 expressed protein (68418.m07853) 4489 Not regulated NC-NC-NC 247435_at At5g62480 glutathione S-transferase, putative (68418.m07841) 4490 Not regulated NC-NC-NC 247436_at At5g62530 delta-1-pyrroline-5-carboxylate dehydrogenase (P5CDH) identical to delta-1-pyrroline-5-carboxylate dehydrogenase precursor [Arabidopsis thaliana] gi|15383744|gb|AAK73756; identical to cDNA delta-1-pyrroline-5-carboxylate dehydrogenase precursor (P5CDH) nuclear gene for mitochondrial product GI: 15383743; contains Pfam profile PF00171: aldehyde dehydrogenase (NAD) family protein (68418.m07848) 4491 Not regulated NC-NC-NC 247438_at At5g62460 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) (68418.m07838) 4492 Not regulated NC-NC-NC 247444_at At5g62630 expressed protein (68418.m07861) 4493 Not regulated NC-NC-NC 247445_at At5g62640 proline-rich family protein contains proline-rich extensin domains, INTERPRO: IPR002965 (68418.m07862) 4494 Not regulated NC-NC-NC 247446_at At5g62650 expressed protein (68418.m07863) 4495 Not regulated NC-NC-NC 247422_at At5g62810 peroxisomal protein (PEX14) identical to PEX14 [Arabidopsis thaliana] GI: 11094252; contains Pfam profile PF04695: Peroxisomal membrane anchor protein (Pex14p) conserved region; supporting cDNA gi|11094253|dbj|AB037539.1| (68418.m07884) 4496 Not regulated NC-NC-NC 247396_at At5g62930 GDSL-motif lipase/hydrolase family protein similar to SP|P41734 Isoamyl acetate-hydrolyzing esterase (EC 3.1.—.—) {Saccharomyces cerevisiae}; contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif (68418.m07896) 4497 Not regulated NC-NC-NC 247398_at At5g62950 expressed protein (68418.m07898) 4498 Not regulated NC-NC-NC 247403_at At5g62740 band 7 family protein strong similarity to hypersensitive-induced response protein [Zea mays] GI: 7716470; contains Pfam profile PF01145: SPFH domain/Band 7 family; supporting cDNA gi|17065547|gb|AY062850.1| (68418.m07876) 4499 Not regulated NC-NC-NC 247405_at At5g62880 Rac-like GTP-binding protein (ARAC10) identical to rac GTP binding protein Arac10 [Arabidopsis thaliana] GI: 3702964, rac-like GTP binding protein Arac10 [Arabidopsis thaliana] GI: 7211193; contains Pfam profile: PF00071 Ras family (68418.m07890) 4500 Not regulated NC-NC-NC 247407_at At5g62900 expressed protein (68418.m07893) 4501 Not regulated NC-NC-NC 247411_at At5g63000 expressed protein (68418.m07904) 4502 Not regulated NC-NC-NC 247414_at At5g63050 expressed protein (68418.m07910) 4503 Not regulated NC-NC-NC 247418_at At5g63030 glutaredoxin, putative similar to glutaredoxin [Ricinus communis] gi|1732424|emb|CAA89699 (68418.m07907) 4504 Not regulated NC-NC-NC 247366_at At5g63260 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) (68418.m07940) 4505 Not regulated NC-NC-NC 247373_at At5g63150 expressed protein (68418.m07929) 4506 Not regulated NC-NC-NC 247374_at At5g63190 MA3 domain-containing protein low similarity to programmed cell death 4 protein [Gallus gallus] GI: 12958564; contains Plain profile PF02847: MA3 domain (68418.m07933) 4507 Not regulated NC-NC-NC 247380_at At5g63380 4-coumarate--CoA ligase family protein/4-coumaroyl-CoA synthase family protein similar to 4CL2 [gi: 12229865] from Arabidopsis thaliana, 4CL1 [gi: 12229631] from Nicotiana tabacum; contains Pfam AMP-binding enzyme domain PF00501 (68418.m07955) 4508 Not regulated NC-NC-NC 247384_at At5g63370 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68418.m07954) 4509 Not regulated NC-NC-NC 247389_at At5g63490 CBS domain-containing protein/octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein contains Pfam profiles: PF00571 CBS domain, PF00584: PB1 domain (68418.m07970) 4510 Not regulated NC-NC-NC 247392_at At5g63570 glutamate-1-semialdehyde 2,1-aminomutase 1 (GSA 1)/glutamate-1-semialdehyde aminotransferase 1 (GSA-AT 1) identical to GSA 1 [SP|P42799] (68418.m07979) 4511 Not regulated NC-NC-NC 247359_at At5g63560 transferase family protein similar to hypersensitivity-related gene product HSR201 - Nicotiana tabacum, EMBL: X95343; contains Pfam transferase family domain PF00248 (68418.m07977) 4512 Not regulated NC-NC-NC 247330_at At5g63510 bacterial transferase hexapeptide repeat-containing protein contains similarity to acetyltransferase; contains Pfam profile PF00132: Bacterial transferase hexapeptide (four repeats) (68418.m07972) 4513 Not regulated NC-NC-NC 247332_at At5g63440 expressed protein contains Pfam PF02594: Uncharacterized ACR, YggU family COG1872 (68418.m07963) 4514 Not regulated NC-NC-NC 247334_at At5g63610 protein kinase, putative similar to cyclin-dependent kinase cdc2MsE [Medicago sativa] gi|1806144|emb|CAA65981; contains protein kinase domain, Pfam: PF00069 (68418.m07986) 4515 Not regulated NC-NC-NC 247336_at At5g63640 VHS domain-containing protein/GAT domain-containing protein weak similarity to hepatocyte growth factor-regulated tyrosine kinase substrate HRS isoform 2 [Homo sapiens] GI: 9022389; contains Pfam profiles PF00790: VHS domain, PF03127: GAT domain (68418.m07990) 4516 Not regulated NC-NC-NC 247347_at At5g63780 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68418.m08005) 4517 Not regulated NC-NC-NC 247353_at At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein contains PFAM zinc-binding dehydrogenase domain PF00107 (68418.m07987) 4518 Not regulated NC-NC-NC 247355_at At5g63670 transcription initiation protein-related contains weak similarity to Transcription initiation protein SPT4 homolog 1 (Swiss- Prot: Q16550) [Mus musculus] (68418.m07993) 4519 Not regulated NC-NC-NC 247356_at At5g63800 glycosyl hydrolase family 35 protein similar to beta-galactosidase GI: 7939621 from [Lycopersicon esculentum]; contains Pfam profile PF01301: Glycosyl hydrolases family 35 (68418.m08007) 4520 Not regulated NC-NC-NC 247298_at At5g63840 alpha-glucosidase, putative similar to alpha-glucosidase GI: 2648032 from [Solanum tuberosum] (68418.m08014) 4521 Not regulated NC-NC-NC 247300_at At5g63910 expressed protein (68418.m08025) 4522 Not regulated NC-NC-NC 247302_at At5g63880 SNF7 family protein contains Pfam domain, PF03357: SNF7 family (68418.m08020) 4523 Not regulated NC-NC-NC 247303_at At5g63890 histidinol dehydrogenase, putative/HDH, putative strong similarity to SP|P24226 Histidinol dehydrogenase, chloroplast precursor (EC 1.1.1.23) (HDH) (Brassica oleracea var. capitata); contains Pfam profile PF00815: histidinol dehydrogenase (68418.m08021) 4524 Not regulated NC-NC-NC 247306_at At5g63870 serine/threonine protein phosphatase (PP7) identical to PP7 [Arabidopsis thaliana] GI: 2791900 (68418.m08017) 4525 Not regulated NC-NC-NC 247307_at At5g63880 UVB-resistance protein (UVR8) identical to UVB-resistance protein UVR8 (GI: 5478530, GB: AAD43920.1) [Arabidopsis thaliana]; contains Pfam 00415: Regulator of chromosome condensation (RCC1) (68418.m08016) 4526 Not regulated NC-NC-NC 247312_at At5g63970 copine-related low similarity to SP|Q99829 Copine I {Homo sapiens} (68418.m08032) 4527 Not regulated NC-NC-NC 247316_at At5g64030 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI: 15320410; contains Pfam profile PF03141: Putative methyltransferase (68418.m08039) 4528 Not regulated NC-NC-NC 247319_at At5g64050 glutamate-tRNA ligase family protein/glutamyl-tRNA synthetase family protein similar to SP|P22250 from Bacillus subtilis, SP|P22249 from Bacillus stearothermophilus: contains Pfam tRNA synthetases class I (E and Q), catalytic domain PF00749 (68418.m08042) 4529 Not regulated NC-NC-NC 247325_at At5g64200 arginine/serine-rich splicing factor SC35 contains similarity to splicing factor: contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (68418.m08062) 4530 Not regulated NC-NC-NC 247326_at At5g64110 peroxidase, putative similar to peroxidase ATP3a [Arabidopsis thaliana] gi|1546698|emb|CAA67340 (68418.m08051) 4531 Not regulated NC-NC-NC 247328_at At5g64130 expressed protein (68418.m08053) 4532 Not regulated NC-NC-NC 247295_at At5g64180 expressed protein (68418.m08058) 4533 Not regulated NC-NC-NC 247296_at At5g64160 expressed protein (68418.m08056) 4534 Not regulated NC-NC-NC 247275_at At5g64370 beta-ureidopropionase, putative/beta-alanine synthase, putative similar to beta-alanine synthase [Dictyostelium discoideum] GI: 14334061; contains Pfam profile PF00795: hydrolase, carbon-nitrogen family (68418.m08086) 4535 Not regulated NC-NC-NC 247277_at At5g64420 DNA polymerase V family contains Pfam domain PF04931: DNA polymerase V (68418.m08092) 4536 Not regulated NC-NC-NC 247278_at At5g64380 fructose-1,6-bisphosphatase family protein similar to SP|P22418 Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) {Spinacia oleracea}; contains Pfam profile PF00316: fructose-1,6- bisphosphatase (68418.m08087) 4537 Not regulated NC-NC-NC 247280_at At5g64260 phosphate-responsive protein, putative similar to phi-1 (phosphate-induced gene) [Nicotiana tabacum] GI: 3759184; contains Pfam profile PF04674: Phosphate-induced protein 1 conserved region (68418.m08073) 4538 Not regulated NC-NC-NC 247281_at At5g64350 FK506-binding protein (FKBP12)/immunophilin identical to immunophilin (GI: 2104957) [Arabidopsis thaliana] (68418.m08082) 4539 Not regulated NC-NC-NC 247282_at At5g64240 latex-abundant family protein (AMC3)/caspase family protein contains similarity to latex-abundant protein [Hevea brasiliensis] gb: AAD13216; contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain (68418.m08089) 4540 Not regulated NC-NC-NC 247286_at At5g64280 oxoglutarate/malate translocator, putative similar to SWISS-PROT: Q41364 2-oxoglutarate/malate translocator, chloroplast precursor [Spinach]{Spinacia oleracea} (68418.m08075) 4541 Not regulated NC-NC-NC 247288_at At5g64330 non-phototropic hypocotyl 3 (NPH3) identical to non-phototropic hypocotyl 3 [Arabidopsis thaliana] gi|6224712|gb|AAF05914, PMID: 10542152 (68418.m08080) 4542 Not regulated NC-NC-NC 247260_at At5g64500 membrane protein-related contains weak similarity to spinster type IV (GI: 12003976) [Drosophila melanogaster] (68418.m08103) 4543 Not regulated NC-NC-NC 247241_at At5g64680 expressed protein (68418.m08128) 4544 Not regulated NC-NC-NC 247246_at At5g64620 invertase/pectin methylesterase inhibitor family protein low similarity to SP|P83326 Pectinesterase inhibitor (Pectin methylesterase inhibitor) (PMEI) {Actinidia chinensis}; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor (68418.m08120) 4545 Not regulated NC-NC-NC 247247_at At5g64650 ribosomal protein L17 family protein contains Pfam profile: PF01196 ribosomal protein L17 (68418.m08125) 4546 Not regulated NC-NC-NC 247255_at At5g64780 expressed protein similar to unknown protein (pir||T04031) (68418.m08145) 4547 Not regulated NC-NC-NC 247257_at At5g64760 26S proteasome regulatory subunit, putative (RPN5) (68418.m08143) 4548 Not regulated NC-NC-NC 247258_at At5g64816 expressed protein (68418.m08153) 4549 Not regulated NC-NC-NC 247259_at At5g64930 CPR5 protein, putative Constitutive expressor of Pathogensis Related genes 5 (cpr5); regulator of disease resistance and senescence (Plant J. (2001)26(4)409-420. (68418.m08167) 4550 Not regulated NC-NC-NC 247207_at At5g65000 nucleotide-sugar transporter family protein low similarity to SP|Q9Y2D2 UDP N-acetylglucosamine transporter {Homo sapiens}; contains Pfam profile PF04142: Nucleotide-sugar transporter (68418.m08175) 4551 Not regulated NC-NC-NC 247211_at At5g64880 expressed protein (68418.m08161) 4552 Not regulated NC-NC-NC 247212_at At5g65040 senescence-associated protein-related similar to senescence-associated protein SAG102 (GI: 22331931) [Arabidopsis thaliana] (68418.m08181) 4553 Not regulated NC-NC-NC 247213_at At5g64900 expressed protein (68418.m08183) 4554 Not regulated NC-NC-NC 247214_at At5g64850 expressed protein (68418.m08158) 4555 Not regulated NC-NC-NC 247219_at At5g64920 COP1-interacting protein (CIP8)/zinc finger (C3HC4-type RING finger) family protein identical to COP1-interacting protein CIP8 [Arabidopsis thaliana] gi|5929906|gb|AAD56636: contains Pfam profile: PF00097 zinc finger, C3HC4 type (68418.m08166) 4556 Not regulated NC-NC-NC 247220_at At5g64960 cyclin-dependent kinase, putative/CDK, putative similar to cyclin dependent kinase C [Lycopersicon esculentum] gi|15215944|emb|CAC51391 (68418.m08171) 4557 Not regulated NC-NC-NC 247222_at At5g64840 ABC transporter family protein (68418.m08157) 4558 Not regulated NC-NC-NC 247199_at At5g65210 bZIP family transcription factor (TGA1) identical to transcription factor (TGA1) GI: 16550 from [Arabidopsis thaliana] (68418.m08203) 4559 Not regulated NC-NC-NC 247201_at At5g65220 ribosomal protein L29 family protein contains Pfam profile PF00831: ribosomal protein L29 (68418.m08205) 4560 Not regulated NC-NC-NC 247202_at At5g65270 Ras-related GTP-binding family protein similar to GTP-binding protein RAB11A GI: 1370142 from [Lotus japonicus]; contains Pfam profile: PF00071 Ras family (68418.m08210) 4561 Not regulated NC-NC-NC 247186_at At5g65470 expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; (68418.m08233) 4562 Not regulated NC-NC-NC 247188_at At5g65430 14-3-3 protein GF14 kappa (GRF8) identical to 14-3-3 protein GF14 kappa GI: 5802794, SP: P48348 from [Arabidopsis thaliana] (68418.m08228) 4563 Not regulated NC-NC-NC 247193_at At5g65380 ripening-responsive protein, putative similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI: 12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family (68418.m08223) 4564 Not regulated NC-NC-NC 247194_at At5g65480 expressed protein (68418.m08234) 4565 Not regulated NC-NC-NC 247151_at At5g65640 basic helix-loop-helix (bHLH) family protein (68418.m08257) 4566 Not regulated NC-NC-NC 247154_at At5g65710 leucine-rich repeat transmembrane protein kinase, putative (68418.m08270) 4567 Not regulated NC-NC-NC 247156_at At5g65760 serine carboxypeptidase S28 family protein similar to SP|P42785 Lysosomal Pro-X carboxypeptidase precursor (EC 3.4.16.2) (Prolylcarboxypeptidase) (PRCP) (Proline carboxypeptidase) {Homo sapiens}; contains Pfam profile PF05577: Serine carboxypeptidase S28 (68418.m08275) 4568 Not regulated NC-NC-NC 247162_at At5g65730 xyloglucan:xyloglucosyl transferase, putative/xyloglucan endotransglycosylase, putative/endo-xyloglucan transferase, putative similar to endo-xyloglucan transferase GI: 2244732 from [Gossypium hirsutum] (68416.m06272) 4569 Not regulated NC-NC-NC 247163_at At5g65685 soluble glycogen synthase-related contains weak similarity to Soluble glycogen synthase, chloroplast precursor (EC 2.4.1.11) (SS III) (Swiss-Prot: Q43846) [Solanum tuberosum] (68418.m08268) 4570 Not regulated NC-NC-NC 247110_at At5g65830 leucine-rich repeat family protein contains leucine rich-repeat domains Pfam: PF00560, INTERPRO: IPR001611; contains similarity to receptor protein kinase-like protein (68418.m08284) 4571 Not regulated NC-NC-NC 247112_at At5g65950 expressed protein (68418.m08302) 4572 Not regulated NC-NC-NC 247113_at At5g65960 expressed protein (68418.m08303) 4573 Not regulated NC-NC-NC 247114_at At5g65910 BSD domain-containing protein contains Pfam profile PF03909: BSD domain (68418.m08296) 4574 Not regulated NC-NC-NC 247117_at At5g65940 3-hydroxyisobutyryl-coenzyme A hydrolase/CoA-thioester hydrolase (CHY1) identical to gi: 8572760; contains Pfam profile PF00388 enoyl-CoA hydratase/isomerase family protein (68418.m08301) 4575 Not regulated NC-NC-NC 247120_at At5g65990 amino acid transporter family protein similar to proton/amino acid transporter 1 [Mus musculus] GI: 21908024; contains Pfam profile PF01490: Transmembrane amino acid transporter protein (68416.m08308) 4576 Not regulated NC-NC-NC 247121_at At5g66010 heterogeneous nuclear ribonucleoprotein, putative/hnRNP, putative similar to Heterogeneous nuclear ribonucleoprotein SP|P55795, SP|P31943, SP|P52597 {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain (68418.m08312) 4577 Not regulated NC-NC-NC 247123_at At5g66050 expressed protein (68418.m08318) 4578 Not regulated NC-NC-NC 247125_at At5g66070 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68418.m08324) 4579 Not regulated NC-NC-NC 247139_at At5g66090 expressed protein (68418.m06326) 4580 Not regulated NC-NC-NC 247106_at At5g66240 transducin family protein/WD-40 repeat family protein contains Pfam PF00400: WD domain, G-beta repeat (4 copies, 1 weak); similar to Will die slowly protein. {Drosophila melanogaster} (SP: Q9V3J8) {Drosophila melanogaster} (68418.m08344) 4581 Not regulated NC-NC-NC 247079_at At5g66055 ankyrin repeat protein/AKRP (AKR) identical to ankyrin repeat protein (AKRP) [Arabidopsis thaliana] SWISS-PROT: Q05753 (68418.m08321) 4582 Not regulated NC-NC-NC 247082_at At5g66030 Golgi-localized GRIP domain-containing protein contains Pfam profile PF01465: GRIP domain; supporting cDNA gi|20303028|gb|AF499634.1|(68418.m08314) 4583 Not regulated NC-NC-NC 247091_at At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) identical to SP|Q9FJ29 Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a) {Arabidopsis thaliana} (68418.m08372) 4584 Not regulated NC-NC-NC 247092_at At5g66380 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein (68418.m08370) 4585 Not regulated NC-NC-NC 247101_at At5g66530 aldose 1-epimerase family protein similar to apospory-associated protein C; APOC [Chlamydomonas reinhardtii] GI: 6970044; contains Pfam profile PF01283: Aldose 1-epimerase (68418.m08388) 4586 Not regulated NC-NC-NC 247072_at At5g66490 expressed protein (68418.m08384) 4587 Not regulated NC-NC-NC 247073_at At5g66570 oxygen-evolving enhancer protein 1-1, chloroplast/33 kDa subunit of oxygen evolving system of photosystem II (PSBO1) (PSBO) identical to SP: P23321 Oxygen-evolving enhancer protein 1-1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) [Arabidopsis thaliana] (68418.m08392) 4588 Not regulated NC-NC-NC 247075_at At5g66410 expressed protein (68418.m08376) 4589 Not regulated NC-NC-NC 247077_at At5g66420 expressed protein (68418.m08377) 4590 Not regulated NC-NC-NC 247049_at At5g66440 expressed protein (68418.m08379) 4591 Not regulated NC-NC-NC 247054_at At5g66730 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type (68418.m08412) 4592 Not regulated NC-NC-NC 247063_at At5g66820 expressed protein (68418.m08425) 4593 Not regulated NC-NC-NC 247065_s_at At5g66900 disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. (68418.m08433) 4594 Not regulated NC-NC-NC 247045_at At5g66930 expressed protein similar to unknown protein (pir||T38383) (68418.m08436) 4595 Not regulated NC-NC-NC 247025_at At5g67030 zeaxanthin epoxidase (ZEP) (ABA1) identical to GI: 9857296 AtABA1; controls Pfam profiles PF01360: Monooxygenase and PF00498: FHA domain; identical to cDNA AtABA1, GI: 9857295 (68418.m08450) 4596 Not regulated NC-NC-NC 247033_at At5g67250 SKP1 interacting partner 2 (SKIP2) identical to SKP1 interacting partner 2 GI: 10716949 from [Arabidopsis thaliana] (68418.m08477) 4597 Not regulated NC-NC-NC 247034_at At5g67260 cyclin family protein similar to cyclin D3.1 protein [Nicotiana tabecum] GI: 4160300; contains Pfam profiles PF00134: Cyclin, N- terminal domain, PF02984: Cyclin, C-terminal domain (68418.m08478) 4598 Not regulated NC-NC-NC 247036_at At5g67130 expressed protein (68418.m08463) 4599 Not regulated NC-NC-NC 247042_at At5g67220 nitrogen regulation family protein similar to unknown protein (gb|AAF51525.1); contains Pfam domain PF01207: Dihydrouridine synthase (Dus): similar to (SP: P45672) NIFR3-like protein (SP: P45672) [Azospirillum brasilense] (68418.m08473) 4600 Not regulated NC-NC-NC 246985_at At5g67290 FAD-dependent oxidoreductase family protein contains Pfam profile PF01266: FAD dependent oxidoreductase (68418.m08484) 4601 Not regulated NC-NC-NC 246986_at At5g67280 leucine-rich repeat transmembrane protein kinase, putative (68418.m08483) 4602 Not regulated NC-NC-NC 246993_at At5g67450 zinc finger (C2H2 type) protein 1 (AZF1) identical to Cys2/His2-type zinc finger protein 1 [Arabidopsis thaliana] gi|6009887|dbj|BAA85108 (68418.m08504) 4603 Not regulated NC-NC-NC 247000_at At5g67380 casein kinase II alpha chain 1 identical to casein kinase II, alpha chain 1 (CK II) [Arabidopsis thaliana] SWISS-PROT: Q08467; contains protein kinase domain, Pfam: PF00069 (68418.m08496) 4604 Not regulated NC-NC-NC 247001_at At5g67330 NRAMP metal ion transporter 4 (NRAMP4) identical to metal transporter Nramp4 [Arabidopsis thaliana] gi|6468014|gb|AAF13279; member of the natural resistance-associated macrophage protein (NRAMP) metal transporter family, PMID: 11500583 (68418.m08491) 4605 Not regulated NC-NC-NC 247006_at At5g67490 expressed protein (68418.m08511) 4606 Not regulated NC-NC-NC 247007_at At5g67500 porin, putative similar to SP|P42055 34 kDa outer mitochondrial membrane protein porin (Voltage-dependent anion-selective channel protein) (VDAC) {Solanum tuberosum}; contains Pfam profile PF01459: Eukaryotic porin (68418.m08512) 4607 Not regulated NC-NC-NC 247011_at At5g67590 NADH-ubiquinone oxidoreductase-related contains weak similarity to NADH-ubiquinone oxidoreductase 21 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex 1-21KD) (CI-21KD). (Swiss-Prot: P25711) [Neurospora crassa]; contains Pfam PF04800: ETC complex I subunit conserved region (68418.m08523) 4608 Not regulated NC-NC-NC 247014_at At5g67630 DNA helicase, putative similar to RuvB-like DNA helicase reptin [Danio rerio] GI: 27733814, reptin [Drosophila melanogaster] GI: 7243682 (68418.m08527) 4609 Not regulated NC-NC-NC 246953_at At5g04850 SNF7 family protein contains Pfam domain, PF03357: SNF7 family (68418.m00508) 4610 Not regulated NC-NC-NC 246958_at At5g24690 expressed protein (68418.m02918) 4611 Not regulated NC-NC-NC 246945_s_at At5g25040 integral membrane transporter family protein similar to biopterin transporter (GI: 3377706) [Leishmania mexicana]; contains Pfam PF03092: BT1 family; contains TIGRFAMS TIGR00788: folate/biopterin transporter, interpro IPR001991/PR00173 Sodium:dicarboxylater symporter family (68418.m02967) 4612 Not regulated NC-NC-NC 246927_s_at At5g25260 expressed protein (68418.m02994) 4613 Not regulated NC-NC-NC 246928_at At5g25270 expressed protein (68418.m02996) 4614 Not regulated NC-NC-NC 246931_at At5g25170 expressed protein (68418.m02984) 4615 Not regulated NC-NC-NC 246938_at At5g25380 expressed protein (68418.m03008) 4616 Not regulated NC-NC-NC 246893_at At5g25520 transcription elongation factor-related contains weak similarity to transcription elongation factors (68418.m03036) 4617 Not regulated NC-NC-NC 246895_at At5g25540 expressed protein (68418.m03039) 4618 Not regulated NC-NC-NC 246897_at At5g25560 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain PF00097: Zinc finger, C3HC4 type (RING finger) (68418.m03041) 4619 Not regulated NC-NC-NC 246908_at At5g25610 dehydration-responsive protein (RD22) identical to SP|Q08298 Dehydration-responsive protein RD22 precursor (Arabidopsis thaliana} (68418.m03047) 4620 Not regulated NC-NC-NC 246909_at At5g25770 expressed protein (68418.m03058) 4621 Not regulated NC-NC-NC 246911_at At5g25810 AP2 domain-containing transcription factor TINY (TINY) identical to transcription factor TINY (GP: 1246403) [Arabidopsis thaliana] (68418.m03063) 4622 Not regulated NC-NC-NC 246861_at At5g25890 auxin-responsive protein/indoleacetic acid-induced protein 28 (IAA28) identical to SP|Q9XFM0|AXIS_ARATH Auxin-responsive protein IAA28 (Indoleacetic acid-induced protein 28) {Arabidopsis thaliana} (68418.m03073) 4623 Not regulated NC-NC-NC 246862_at At5g25760 ubiquitin-conjugating enzyme, putative similar to SP|Q60015 Ubiquitin-conjugating enzyme E2-21 kDa (EC 6.3.2.19) (Ubiquitin- protein ligase) (Ubiquitin carrier protein) (Pichia angusta); contains Pfam profile PF00179: Ubiquitin-conjugating enzyme (68418.m03057) 4624 Not regulated NC-NC-NC 246863_at At5g25940 early nodulin-related contains weak similarity to Swiss-Prot: Q02921 early nodulin 93 (N-93) [Glycine max] (68418.m03083) 4625 Not regulated NC-NC-NC 246864_at At5g25900 ent-kaurene oxidase, putative (GA3)/cytochrome P450 identical to GA3 [Arabidopsis thaliana] GI: 3342249; similar to ent-kaurene oxidase [Cucurbita maxima] GI: 11934675; contains Pfam profile PF00067: Cytochrome P450 (68418.m03075) 4626 Not regulated NC-NC-NC 246865_s_at At5g25780 eukaryotic translation initiation factor 3 subunit 9, putative/eIF-3 eta, putative/eIF3b, putative nearly identical to SP|Q9C5Z1 Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis thaliana} (68418.m03060) 4627 Not regulated NC-NC-NC 246879_at At5g26110 expressed protein (68418.m03106) 4628 Not regulated NC-NC-NC 246888_at At5g26270 expressed protein; expression supported by MPSS (68418.m03135) 4629 Not regulated NC-NC-NC 246856_at At5g26210 PHD finger family protein contains Pfam domain, PF00628: PHD-finger (68418.m03119) 4630 Not regulated NC-NC-NC 246832_at At5g26595 4631 Not regulated NC-NC-NC 246843_at At5g26734 4632 Not regulated NC-NC-NC 246849_at At5g26850 expressed protein (68418.m03203) 4633 Not regulated NC-NC-NC 246852_at At5g26880 tRNA/rRNA methyltransferase (SpoU) family protein low similarity to tRNA (Gm1B) methyltransferase [Thermus thermophilus] GI: 11079208; contains Pfam profile PF00588: SpoU rRNA Methylase (RNA methyltransferase, TrmH) family (68418.m03206) 4634 Not regulated NC-NC-NC 246824_at At5g26990 drought-responsive family protein non-consensus AT donor splice site at exon 3, AC acceptor splice site at exon 4; similar to drought-induced mRNA, Di19 [Arabidopsis thaliana] gi|469110|emb|CAA55321 (68418.m03220) 4635 Not regulated NC-NC-NC 246815_at At5g27220 protein transport protein-related low similarity to SP|P25386 Intracellular protein transport protein USO1 {Saccharomyces cerevisiae} (68418.m03247) 4636 Not regulated NC-NC-NC 246791_at At5g27280 zinc finger (DNL type) family protein contains Pfam profile PF05180: DNL zinc finger (68418.m03256) 4637 Not regulated NC-NC-NC 246792_at At5g27290 expressed protein predicted proteins, Arabidopsis thaliana (68418.m03258) 4638 Not regulated NC-NC-NC 246763_at At5g27150 sodium proton exchanger/Na+/H+ antiporter (NHX1) identical to Na+/H+ exchanger [Arabidopsis thaliana] gi|6650177|gb|AAF21755 and sodium proton exchanger Nhx1 [Arabidopsis thaliana] gi|4324597|gb|AAD16946; Member of The Monovalent Cation:Proton Antiporter (CPA1) Family, PMID: 11500563 (68418.m03240) 4639 Not regulated NC-NC-NC 246766_at At5g27400 expressed protein hypothetical proteins-different species (68418.m03271) 4640 Not regulated NC-NC-NC 246778_at At5g27450 mevalonate kinase (MK) identical to mevalonate kinase [Arabidopsis thaliana] SWISS-PROT: P46086 (68418.m03276) 4641 Not regulated NC-NC-NC 246780_at At5g27470 seryl-tRNA synthetase/serine-tRNA ligase identical to SP|Q39230 Seryl-tRNA synthetase (EC 6.1.1.11) (Serine-tRNA ligase) (SerRS) {Arabidopsis thaliana} (68418.m03281) 4642 Not regulated NC-NC-NC 246781_at At5g27350 sugar-porter family protein 1 (SFP1) identical to sugar-porter family protein 1 [Arabidopsis thaliana] GI: 14585699 (68418.m03266) 4643 Not regulated NC-NC-NC 246784_at At5g27430 signal peptidase subunit family protein contains Pfam profile: PF04573 signal peptidase subunit (68418.m03274) 4644 Not regulated NC-NC-NC 246789_at At5g27600 AMP-binding protein, putative similar to AMP-binding protein (MF39P) gi: 1617274 from Brassica napus, long-chain-fatty-acid-CoA ligase - Brassica napus, EMBL: Z72152; contains Pfam AMP-binding enzyme domain PF00501 (68418.m03305) 4645 Not regulated NC-NC-NC 246735_at At5g27670 histone H2A, putative similar to histone H2A Lycopersicon esculentum SP|P25469. Pisum sativum SP|P25470, Petroselinum crispum SP51 P19177; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 (68418.m03317) 4646 Not regulated NC-NC-NC 246741_at At5g27720 small nuclear ribonucleoprotein, putative/snRNP, putative/Sm protein, putative similar to SWISS-PROT: Q9QXA5 U6 snRNA- associated Sm-like protein LSm4 [Mus musculus] (68418.m03325) 4647 Not regulated NC-NC-NC 246742_at At5g27840 serine/threonine protein phosphatase PP1 isozyme 8 (TOPP8) identical to SP|O82734 Serine/threonine protein phosphatase PP1 isozyme 8 (EC 3.1.3.16) {Arabidopsis thaliana} (68418.m03337) 4648 Not regulated NC-NC-NC 246748_at At5g27820 ribosomal protein L18 family protein similar to SP|P52863 50S ribosomal protein L18 [Aeromonas proteolytica] (Vibrio proteolyticus) (68418.m03335) 4649 Not regulated NC-NC-NC 246749_at At5g27830 expressed protein (68418.m03336) 4650 Not regulated NC-NC-NC 246755_at At5g27920 F-box family protein contains similarity to leucine-rich repeats containing F-box protein FBL3 GI: 5919219 from [Homo sapiens] (68418.m03354) 4651 Not regulated NC-NC-NC 246760_at At5g27970 expressed protein (68418.m03369) 4652 Not regulated NC-NC-NC 246728_at At5g28040 expressed protein contains Pfam profile: PF04504 protein of unknown function, DUF573 (68418.m03378) 4653 Not regulated NC-NC-NC 246699_at At5g27990 expressed protein predicted proteins, Saccharomyces cerevisiae and Schizosaccharomyces pombe (68416.m03371) 4654 Not regulated NC-NC-NC 246701_at At5g28020 cysteine synthase, putative/O-acetylserine (thiol)-lyase, putative/O-acetylserine sulfhydrylase, putative similar to O- acetylserine(thiol) lyase (EC 4.2.99.8) [Brassica juncea] GI: 2245144; contains Pfam profile PF00291: Pyridoxal-phosphate dependent enzyme (68418.m03374) 4655 Not regulated NC-NC-NC 246708_at At5g28150 expressed protein (68418.m03402) 4656 Not regulated NC-NC-NC 246673_at At5g29771 4657 Not regulated NC-NC-NC 246681_at At5g33280 chloride channel-like (CLC) protein, putative similar to CLC-c, At5g49890 [Arabidopsis thaliana] and chloride channel protein ClC-1- Nicotiana tabacum, PIR: T02939 (68418.m03944) 4658 Not regulated NC-NC-NC 246636_at At5g34850 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase (68418.m04090) 4659 Not regulated NC-NC-NC 246644_at At5g35100 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein contains Pfam domain, PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type (68418.m04153) 4660 Not regulated NC-NC-NC 246653_at At5g35200 epsin N-terminal homology (ENTH) domain-containing protein contains Pfam PF01417: ENTH domain. ENTH (Epsin N-terminal homology) domain; similar to clathrin assembly protein short form, Rattus norvegicus, EMBL: AF041373; similar to Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid Leukaemia Protein, Pi(4,5)p2 Complex (GP: 13399999) {Homo sapiens} (68418.m04171) 4661 Not regulated NC-NC-NC 246654_s_at At5g35210 peptidase M50 family protein/sterol-regulatory element binding protein (SREBP) site 2 protease family protein contains PFam PF02163: sterol-regulatory element binding protein (SREBP) site 2 protease (68418.m04174) 4662 Not regulated NC-NC-NC 246607_at At5g35370 lectin protein kinase family protein contains Pfam domains, PF01453: Lectin (probable mannose binding) and PF00069: Protein kinase domain (68418.m04204) 4663 Not regulated NC-NC-NC 246611_at At5g35330 methyl-CpG-binding domain-containing protein similar to methyl-CpG binding protein MBD4 [Mus musculus] GI: 3800807; contains Pfam profile PF01429: Methyl-CpG binding domain (68418.m04187) 4664 Not regulated NC-NC-NC 246613_at At5g35360 acetyl-CoA carboxylase, biotin carboxylase subunit (CAC2) identical to acetyl-CoA carboxylase, biotin carboxylase subunit (CAC2) [Arabidopsis thaliana] GI: 1905876 (68418.m04203) 4665 Not regulated NC-NC-NC 246619_at At5g36290 expressed protein contains Pfam profile PF01169: Uncharacterized protein family UPF0016 (68418.m04378) 4666 Not regulated NC-NC-NC 246620_at At5g36220 cytochrome P450 81D1 (CYP81D1) (CYP91A1) Identical to Cytochrome P450 (SP: Q9FG65) [Arabidopsis thaliana]; (68418.m04368) 4667 Not regulated NC-NC-NC 246621_at At5g36230 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein low similarity to SP|Q13144 Translation initiation factor eIF-2B epsilon subunit (eIF-2B GDP-GTP exchange factor) {Homo sapiens}; contains Pfam profile PF02020: eIF4-gamma/eIF5/eIF2-epsilon (68418.m04371) 4668 Not regulated NC-NC-NC 246622_at At5g36250 protein phosphatase 2C, putative/PP2C, putative (68418.m04373) 4669 Not regulated NC-NC-NC 246623_at At1g48920 nucleolin, putative similar to nuM1 protein GI: 1279562 from [Medicago sativa] (68414.m05480) 4670 Not regulated NC-NC-NC 246630_at At1g50730 expressed protein (68414.m05705) 4671 Not regulated NC-NC-NC 246575_at At1g31660 bystin family contains Pfam profile: PF05291 Bystin (68414.m03887) 4672 Not regulated NC-NC-NC 246576_at At1g31650 expressed protein contains Pfam profile PF03759. Domain of unknown function (DUF315) (68414.m03886) 4673 Not regulated NC-NC-NC 246591_at At5g14880 potassium transporter, putative similar to potassium transporter HAK2p [Mesembryanthemum crystallinum] gi|1409147|gb|AAK53759; KUP/HAK/KT Transporter family member, PMID: 11500563; contains Pfam profile PF02705: K+ potassium transporter (68418.m01745) 4674 Not regulated NC-NC-NC 246593_at At5g14790 expressed protein (68418.m01735) 4675 Not regulated NC-NC-NC 246567_at At5g14950 glycosyl hydrolase family 38 protein similar to alpha-mannosidase II SP: P27046 from [Mus musculus] (68418.m01754) 4676 Not regulated NC-NC-NC 246546_at At5g15090 porin, putative/voltage-dependent anion-selective channel protein, putative similar to SP|P42055 34 kDa outer mitochondrial membrane protein porin (Voltage-dependent anion-selective channel protein) (VDAC) {Solanum tuberosum}; contains Pfam profile PF01459: Eukaryotic porin; identical to cDNA voltage-dependent anion-selective channel protein GI: 4006940 (68418.m01768) 4677 Not regulated NC-NC-NC 246548_at At5g14910 heavy-metal-associated domain-containing protein Pfam profile PF00403: Heavy-metal-associated domain (68418.m01749) 4678 Not regulated NC-NC-NC 246549_at At5g15050 glycosyltransferase family 14 protein/core-2/I-branching enzyme family protein contains Pfam profile: PF02485 Core-2/I-Branching enzyme (68418.m01764) 4679 Not regulated NC-NC-NC 246553_at At5g15440 circadian clock coupling factor-related similar to circadian clock coupling factor ZGT [Nicotiana tabacum] GI: 14210079 (68418.m01807) 4680 Not regulated NC-NC-NC 246559_at At5g15550 transducin family protein/WD-40 repeat family protein similar to YTM1 - Homo sapiens, EMBL: AF242546; contains Pfam PF00400: WD domain, G-beta repeat (7 copies, 1 weak); (68418.m01820) 4681 Not regulated NC-NC-NC 246564_at At5g15610 proteasome family protein contains Pfam domain, PF01399: PCI domain (68418.m01826) 4682 Not regulated NC-NC-NC 246565_at At5g15530 biotin carboxyl carrier protein 2 (BCCP2) identical to biotin carboxyl carrier protein isoform 2 [Arabidopsis thaliana] gi|8886869|gb|AAF80592 (68418.m01818) 4683 Not regulated NC-NC-NC 246538_at At5g15520 40S ribosomal protein S19 (RPS19B) 40S RIBOSOMAL PROTEIN S19 - Oryza sativa, SWISSPROT: RS19_ORYSA (68418.m01817) 4684 Not regulated NC-NC-NC 246519_at At5g15780 pollen Ole e 1 allergen and extensin family protein contains Pfam profile PF01190: Pollen proteins Ole a I family (68418.m01845) 4685 Not regulated NC-NC-NC 246521_at At5g15810 N2,N2-dimethylguanosine tRNA methyltransferase family protein similar to SP|Q9P804 N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC 2.1.1.32) (tRNA(guanine-26,N(2)—N(2)) methyltransferase) {Schizosaccharomyces pombe}; contains Pfam profile PF02005: N2,N2-dimethylguanosine tRNA methyltransferase (68418.m01850) 4686 Not regulated NC-NC-NC 246527_at At5g15750 RNA-binding S4 domain-containing protein 40S RIBOSOMAL PROTEINs-different species (68418.m01842) 4687 Not regulated NC-NC-NC 246528_at At5g15640 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein (68418.m01830) 4688 Not regulated NC-NC-NC 246533_at At5g15880 expressed protein (68418.m01858) 4689 Not regulated NC-NC-NC 246479_at At5g16060 expressed protein (68418.m01877) 4690 Not regulated NC-NC-NC 246480_at At5g16070 chaperonin, putative similar to SWISS-PROT: P80317 T-complex protein 1, zeta subunit (TCP-1-zeta) [Mus musculus]; contains Pfam: PF00118 domain, TCP-1/cpn60 chaperonin family (68418.m01878) 4691 Not regulated NC-NC-NC 246487_at At5g16030 expressed protein (68418.m01874) 4692 Not regulated NC-NC-NC 246489_at At5g16050 14-3-3 protein GF14 upsilon (GRF5) identical to 14-3-3 protein GF14 upsilon GI: 2232148 from [Arabidopsis thaliana] (68418.m01876) 4693 Not regulated NC-NC-NC 246490_at At5g15950 adenosylmethionine decarboxylase family protein contains Pfam profile: PF01536 adenosylmethionine decarboxylase (68418.m01865) 4694 Not regulated NC-NC-NC 246492_at At5g16140 peptidyl-tRNA hydrolase family protein contains Pfam profile PF01195: peptidyl-tRNA hydrolase (68418.m01885) 4695 Not regulated NC-NC-NC 246497_at At5g16220 octicosapeptide/Phox/Bern1p (PB1) domain-containing protein hypothetical proteins - Arabidopsis thaliana contains Pfam profile PF00564: PB1 domain (68418.m01895) 4696 Not regulated NC-NC-NC 246503_at At5g16130 40S ribosomal protein S7 (RPS7C) 40S ribosomal protein S7 homdog - Brassica oleracea, EMBL: AF144752 (68418.m01884) 4697 Not regulated NC-NC-NC 246505_at At5g16250 expressed protein (68418.m01898) 4698 Not regulated NC-NC-NC 246506_at At5g16110 expressed protein hypothetical protein T26J14.6 - Arabidopsis thaliana, EMBL: AC011915 (68418.m01882) 4699 Not regulated NC-NC-NC 246507_at At5g16120 hydrolase, alpha/beta fold family protein similar to monoglycetide lipase from [Homo sapiens] GI: 14594904, [Mus musculus] GI: 2632162; contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68418.m01883) 4700 Not regulated NC-NC-NC 246508_at At5g16150 hexose transporter, putative strong similarity to hexose transporter [Arabidopsis thaliana] GI: 8347250; contains Pfam profile PF00083: major facilitator superfamily protein (68418.m01886) 4701 Not regulated NC-NC-NC 246448_at At5g16800 GCN5-related N-acetyltransferase (GNAT) family protein very low similarity to SP|P39909 Spermine/spermidine acetyltransferase (EC 2.3.1.57) {Bacillus subtilis}; contains Pfam profile PF00583: acetyltransferase, GNAT family (68418.m01967) 4702 Not regulated NC-NC-NC 246451_at At5g16760 inositol 1,3,4-trisphosphate 5/6-kinase identical to inositol 1,3,4-trisphosphate 5/6-kinase GI: 3396079 from [Arabidopsis thaliana] (68418.m01962) 4703 Not regulated NC-NC-NC 246452_at At5g16840 RNA recognition motif (RRM)-containing protein predicted proteins - Arabidopsis thaliana (68418.m01973) 4704 Not regulated NC-NC-NC 246453_at At5g16830 syntaxin 21 (SYP21)/PEP12 homolog identical to Syntaxin homolog (PEP12 homolog) (SP: Q39233) and syntaxin of plants 21 (GP: 899122) {Arabidopsis thaliana}; contains Pfam profiles PF05739: SNARE domain and PF00804: Syntaxin (68418.m01972) 4705 Not regulated NC-NC-NC 246454_at At5g16710 dehydroascorbate reductase, putative Strong similarity to dehydroascorbate reductase [Spinacia cleracea] gi: 10952512 gb: AAG24945 (68418.m01956) 4706 Not regulated NC-NC-NC 246460_at At5g16910 cellulose synthase family protein similar to gi: 2827143 cellulose synthase catalytic subunit, Arabidopsis thaliana, gi: 9622886 cellulose synthase-7 from Zea mays (68418.m01982) 4707 Not regulated NC-NC-NC 246462_at At5g16940 expressed protein contains Pfam profile PF04828: Protein of unknown function (DUF636) (68418.m01985) 4708 Not regulated NC-NC-NC 246466_at At5g17010 sugar transporter family protein similar to D-xylose proton-symporter [Lactobacillus brevis] GI: 2895856; contains Pfam profile PF00083: major facilitator superfamily protein (68418.m01992) 4709 Not regulated NC-NC-NC 246468_at At5g17050 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP glucose:flavonoid 3-o-glucosyttransferase, Vitis vinifera, EMBL: AF000372 (68418.m01998) 4710 Not regulated NC-NC-NC 246469_at At5g17070 expressed protein (68418.m02000) 4711 Not regulated NC-NC-NC 246417_at At5g16990 NADP-dependent oxidoreductase, putative strong similarity to probable NADP-dependent oxidoreductase (zeta-crystallin homolog) P1 [SP|Q39172][gi: 886428] and P2 [SP|Q39173][gi: 886430], Arabidopsis thaliana (68418.m01990) 4712 Not regulated NC-NC-NC 246421_at At5g16880 VHS domain-containing protein/GAT domain-containing protein weak similarity to hepatocyte growth factor-regulated tyrosine kinase Substrate [Homo sapiens] GI: 2731383; contains Pfam profiles PF00790: VHS domain, PF03127: GAT domain (68418.m01977) 4713 Not regulated NC-NC-NC 246422_at At5g17060 ADP-ribosylation factor, putative similar to ADP-ribosylation factor 1; ARF 1 (GP: 385340) {Drosophila melanogaster} (68418.m01999) 4714 Not regulated NC-NC-NC 246434_at At5g17520 root cap 1 (RCP1) identical to GI: 6137138 (68418.m02055) 4715 Not regulated NC-NC-NC 246440_at At5g17650 glycine/proline-rich protein glycine/proline-rich protein GPRP - Arabidopsis thaliana, EMBL: X84315 (68418.m02069) 4716 Not regulated NC-NC-NC 246441_at At5g17560 BolA-like family protein contains Pfam profile: PF01722 BolA-like protein (68418.m02060) 4717 Not regulated NC-NC-NC 246442_at At5g17610 expressed protein (68418.m02065) 4718 Not regulated NC-NC-NC 246443_at At5g17620 expressed protein (68418.m02066) 4719 Not regulated NC-NC-NC 246446_at At5g17640 expressed protein (68418.m02068) 4720 Not regulated NC-NC-NC 246412_at At5g17530 phosphoglucosamine mutase family protein low similarity to phosphoglucomutase/phosphomannomutase [Sphingomonas paucimobilis] GI: 6103619; contains InterPro accession IPR006352: Phosphoglucosamine mutase (68418.m02056) 4721 Not regulated NC-NC-NC 246391_at At1g77350 expressed protein (68414.m09008) 4722 Not regulated NC-NC-NC 246398_at At1g58100 TCP family transcription factor, putative similar to auxin-induced basic helix-loop-helix transcription factor GI: 5731257 from [Gossypium hirsutum] (68414.m06585) 4723 Not regulated NC-NC-NC 246400_at At1g57540 expressed protein contains similarity to T-box domain GI: 5931592 from (Cynops pyrrhogaster) (68414.m06525) 4724 Not regulated NC-NC-NC 246404_at At1g57600 membrane bound O-acyl transferase (MBOAT) family protein low similarity to skinny hedgehog [Drosophila melanogaster] GI: 15420642; contains Pfam profile PF03062: MBOAT family (68414.m06536) 4725 Not regulated NC-NC-NC 246405_at At1g57630 disease resistance protein (TIR class), putative domain signature TIR exists, suggestive of a disease resistance protein. (68414.m06540) 4726 Not regulated NC-NC-NC 246378_at At1g57620 emp24/gp25L/p24 family protein similar to SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa Transmembrane trafficking protein) {Homo sapiens}; contains Pfam profile PF01105: emp24/gp25L/p24 family (68414.m06539) 4727 Not regulated NC-NC-NC 246379_s_at At1g57660 60S ribosomal protein L21 (RPL21E) similar to 60S ribosomal protein L21 GB: Q43291 GI: 2851508 from [Arabidopsis thaliana] (68414.m06543) 4728 Not regulated NC-NC-NC 246376_at At1g51950 auxin-responsive protein/indoleacetic acid-induced protein 18 (IAA18) identical to SP|O024408|AXII_ARATH Auxin-responsive protein IAA18 (Indoleacetic acid-induced protein 18) {Arabidopsis thaliana} (68414.m05856) 4729 Not regulated NC-NC-NC 246351_at At1g16570 glycosyl transferase family 1 protein contains similarity to mannosyltransferase GI: 1800223 from Dictyostelium discoideum; contains Pfam glycosyl transferase, group 1 family protein domain PF00534 (68414.m01988) 4730 Not regulated NC-NC-NC 246320_at At1g16560 Per1-like family protein contains Pfam profile PF04080: Per1-like (68414.m01983) 4731 Not regulated NC-NC-NC 246327_at At1g16670 protein kinase family protein contains protein kinase domain, Pfam: PF00069; similar to receptor-like serine/threonine kinase GI: 2465923 from [Arabidopsis thaliana] (68414.m01996) 4732 Not regulated NC-NC-NC 246335_at At3g44880 Rieske [2Fe—2S] domain-containing protein similar to lethal leaf-spot 1 from Zea mays [gi: 1935909]; contains Pfam PF00355 Rieske [2Fe—2S] domain (68416.m04835) 4733 Not regulated NC-NC-NC 246339_at At3g44890 50S ribosomal protein L9, chloroplast (CL9) contains Pfam profile PF03948: Ribosomal protein L9, C-temenal domain; contains Pfam profile PF01281: ribosomal protein L9, N-terminal domain; contains TIGRfam profile TIGR00158: ribosomal protein L9 (68416.m04836) 4734 Not regulated NC-NC-NC 246348_at At3g56840 FAD-dependent oxidoreductase family protein contains Pfam profile PF01266 FAD dependent oxidoreductase (68416.m06321) 4735 Not regulated NC-NC-NC 246314_at At3g56850 ABA-responsive element-binding protein 3 (AREB3) identical to ABA-responsive element binding protein 3 (AREB3) [Arabidopsis thaliana] GI: 9967421 (68416.m06322) 4736 Not regulated NC-NC-NC 246319_at At3g56680 expressed protein (68416.m06305) 4737 Not regulated NC-NC-NC 246290_at At3g56800 calmodulin-2/3/5 (CAM3) identical to calmodulin GI: 474183 from [Arabidopsis thaliana]; almost identical to calmodulin-2/3/5 SP: P25069 [Arabidopsis thaliana] (68416.m06317) 4738 Not regulated NC-NC-NC 246291_at At3g56820 expressed protein (68416.m06319) 4739 Not regulated NC-NC-NC 246294_at At3g56910 expressed protein (68416.m06330) 4740 Not regulated NC-NC-NC 246300_at At3g51830 phosphoinositide phosphatese family protein contains similarity to phosphoinositide phosphatase SAC1 [Rattus norvegicus] gi|11095248|gb51 AAG29810; contains Pfam domain, PF02383: Sact homology domain; Contains nonconsensus AT/AA splice site at intron 7 (68416.m05684) 4741 Not regulated NC-NC-NC 246301_at At3g51850 calcium-dependent protein kinase, putative/CDPK, putative similar to calcium-dependent protein kinase [Arabidopsis thaliana] gi|836942|gb|AAA67655; contains protein kinase domain, Pfam: PF00069; contains EF hand domain (calcium-binding EF-hand), Pfam: PF00036, INTERPRO: IPR002048 (68416.m05686) 4742 Not regulated NC-NC-NC 246303_at At3g51870 mitochondrial substrate carrier family protein peroxisomal Ca-dependent solute carrier - Oryctolagus cuniculus, EMBL: AF004161 (68416.m05688) 4743 Not regulated NC-NC-NC 246305_at At3g51890 expressed protein protein At2g40060 - Arabidopsis thaliana, EMBL: AF002109 (68416.m05691) 4744 Not regulated NC-NC-NC 246306_at At3g51780 BAG domain-containing protein low similarity to SP|Q99933 BAG-family molecular chaperone regulator-1 {Homo sapiens}; contains Pfam profile PF02179: BAG (Apoptosis regulator Bcl-2 protein) domain (68416.m05678) 4745 Not regulated NC-NC-NC 246308_at At3g51820 chlorophyll synthetase, putative identical to gi: 972938 putative chlorophyll synthetase from Arabidopsis thaliana (68416.m05683) 4746 Not regulated NC-NC-NC 246311_at At3g51880 high mobility group protein alpha (HMGalpha)/HMG protein alpha nearly identical to HMG protein (HMGalpha) [Arabidopsis thaliana] GI: 2832357; contains Pfam profile PF00505: HMG (high mobility group) box (68416.m05689) 4747 Not regulated NC-NC-NC 246259_at At1g31830 amino acid permease family protein weak similarity to y+LAT1a (amino acid transporter) [Mus musculus] GI: 3970791; contains Pfam profile PF00324: Amino acid permease (68414.m03909) 4748 Not regulated NC-NC-NC 246263_at At1g31780 conserved oligomeric Golgi complex component-related/COG complex component-related similar to Conserved oligomeric Golgi complex component 6 (Swiss-Prot: Q9Y2V7) [Homo sapiens]; (68414.m03901) 4749 Not regulated NC-NC-NC 246265_at At1g31860 histidine biosynthesis bifunctional protein (HISIE) identical to histidine biosynthesis bifunctional protein hisIE, chloroplast [precursor] SP: O82768 from [Arabidopsis thaliana]; identical to cDNA phosphoribosyl-ATP pyrophosphohydrolase GI: 3461883 (68414.m03916) 4750 Not regulated NC-NC-NC 246268_at At1g31800 cytochrome P450 family protein similar to Cytochrome P450 97B2 (SP: 048921) [Glycine max]; contains Pfam profile: PF00067: Cytochrome P450 (68414.m03903) 4751 Not regulated NC-NC-NC 246280_at At4g36660 expressed protein (68417.m05202) 4752 Not regulated NC-NC-NC 246283_at At4g36860 LIM domain-containing protein low similarity to LIM-domain protein [Branchiostoma floridae] GI: 3360516, DRAL/Stim3/FHL2 [Homo sapiens] GI: 7209525; contains Pfam profile PF00412: LIM domain (68417.m05226) 4753 Not regulated NC-NC-NC 246284_at At4g36780 brassinosteroid signalling positive regulator-related contains similarity to BZR1 protein [Arabidopsis thaliana] gi|20270971|gb|AAM18490 (68417.m05218) 4754 Not regulated NC-NC-NC 246226_at At4g37200 thioredoxin family protein contains Pfam profile: PF00085 Thioredoxin; identical to cDNA thioredoxin-like protein (hcf164 gene) GI: 12049652 (68417.m05266) 4755 Not regulated NC-NC-NC 246232_at At4g36630 expressed protein (68417.m05198) 4756 Not regulated NC-NC-NC 246233_at At4g36550 U-box domain-containing protein low similarity to immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum] GI: 14582200; contains Pfam profile PF04564: U-box domain (68417.m05190) 4757 Not regulated NC-NC-NC 246234_at At4g37280 MRG family protein contains Pfam domain PF05712: MRG (68417.m05278) 4758 Not regulated NC-NC-NC 246240_at At4g37130 hydroxyproline-rich glycoprotein family protein (68417.m05276) 4759 Not regulated NC-NC-NC 246244_at At4g37250 leucine-rich repeat family protein/protein kinase family protein contains protein kinase domain, Pfam: PF00069; contains leucine- rich repeats, Pfam: PF00560 (68417.m05273) 4760 Not regulated NC-NC-NC 246245_at At4g36440 expressed protein (68417.m05176) 4761 Not regulated NC-NC-NC 246225_at At4g36910 CBS domain-containing protein contains Pfam profile PF00571: CBS domain (68417.m05232) 4762 Not regulated NC-NC-NC 246194_at At4g37000 accelerated cell death 2 (ACD2) identical to accelerated cell death 2 (ACD2) GI: 12484129 from [Arabidopsis thaliana] (68417.m05242) 4763 Not regulated NC-NC-NC 246198_at At4g36810 geranylgeranyl pyrophosphate synthase (GGPS1)/GGPP synthetase/farnesyltranstransferase identical to GI: 413730 to geranylgeranyl pyrophosphate synthase, chloroplast precursor GB: P34802 from [Arabidopsis thaliana] synonymous with farnesyltranstransferase (68417.m05221) 4764 Not regulated NC-NC-NC 246199_at At4g36530 hydrolase, alpha/beta fold family protein low similarity to hydrolase [Sphingomonas sp.] GI: 3426124; contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68417.m05186) 4765 Not regulated NC-NC-NC 246201_at At4g38750 quinone reductase family protein similar to 1,4-benzoquinone reductase [Phanerochaete chrysosporium][GI: 4454993]; similar to Trp repressor binding protein [Escherichia coli][SP|P30849]; contains flavodoxin domain PF00258 (68417.m05214) 4766 Not regulated NC-NC-NC 246202_at At4g37040 metallopeptidase M24 family protein similar to SP|O33343 Methionine aminopeptidase (EC 3.4.11.18) (Peptidase M) {Mycobacterium tuberculosis}, contains Pfam profile PF00557: metallopeptidase family M24 (68417.m05248) 4767 Not regulated NC-NC-NC 246203_at At4g36610 hydratase, alpha/beta fold family protein low similarity to 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase [Pseudomonas fluorescens] GI: 1871461; contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68417.m05196) 4768 Not regulated NC-NC-NC 246204_at At4g37020 expressed protein (68417.m05244) 4769 Not regulated NC-NC-NC 246205_at At4g36970 remorin family protein contains Pfam domain, PF03763: Remorin, C-terminal region (68417.m05239) 4770 Not regulated NC-NC-NC 246207_at At4g36960 RNA recognition motif (RRM)-containing protein similar to SP|P48809 Heterogeneous nuclear ribonucleoprotein 27C (hnRNP 48) {Drosophila melanogaster); contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); non- consensus TA donor splice site at exon 6 (68417.m05238) 4771 Not regulated NC-NC-NC 246211_at At4g36730 G-box binding factor 1 (GBF1) identical to G-box binding factor 1 SP: P42774 from [Arabidopsis thaliana]; contains Pfam profile: PF00170 bZIP transcription factor (68417.m05211) 4772 Not regulated NC-NC-NC 246214_at At4g36990 heat shock factor protein 4 (HSF4)/heat shock transcription factor 4 (HSTF4) identical to heat shock transcription factor 4 (HSF4) SP: Q96320 from {Arabidopsis thaliana} (68417.m05241) 4773 Not regulated NC-NC-NC 246219_at At4g36760 aminopeptidase P similar to Xaa-Pro aminopeptidase 2 [Lycopersicon esculentum] GI: 15384991; contains Pfam profile PF00557: metallopeptidase family M24 (68417.m05215) 4774 Not regulated NC-NC-NC 246220_at At4g37210 tetratricopeptide repeat (TPR)-containing protein low similarity to SP|Q02508 Protein HGV2 Halocynthia roratzi; contains Pfam profile PF00515 TPR Domain (68417.m05287) 4775 Not regulated NC-NC-NC 246221_at At4g37120 expressed protein (68417.m05257) 4776 Not regulated NC-NC-NC 246169_at At5g32470 expressed protein (68418.m03828) 4777 Not regulated NC-NC-NC 246171_at At5g32440 expressed protein (68418.m03825) 4778 Not regulated NC-NC-NC 246189_at At5g20910 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile PF00097 zinc finger, C3HC4 type (RING finger) (68418.m02483) 4779 Not regulated NC-NC-NC 248192_at At5g20920 eukaryotic translation initiation factor 2 subunit 2, putative/eIF-2-beta, putative similar to SP|P41035 Eukaryotic translation initiation factor 2 subunit (eIF-2-beta) (Oryctolagus cunicutus); contains Pfam profile PF01873: Domain found in IF2B/IF5 (68418.m02484) 4780 Not regulated NC-NC-NC 246159_at At5g20935 expressed protein (68418.m02487) 4781 Not regulated NC-NC-NC 246160_at At5g21040 F-box family protein/WD-40 repeat family protein contains G-protein beta WD-40 repeats (68418.m02503) 4782 Not regulated NC-NC-NC 246131_at At5g20990 molybdopterin biosynthesis CNX1 protein/molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) identical to SP|Q39054 Molybdopterin biosynthesis CNX1 protein (Molybdenum cofactor biosynthesis enzyme CNX1) {Arabidopsis thaliana} (68418.m02495) 4783 Not regulated NC-NC-NC 246135_at At5g20885 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68418.m02480) 4784 Not regulated NC-NC-NC 246146_at At5g20050 protein kinase family protein contains protein kinase domain, Pfam: PF00069 (68418.m02387) 4785 Not regulated NC-NC-NC 246147_s_at At5g20000 26S proteasome AAA-ATPase subunit, putative almost identical to 26S proteasome AAA-ATPase subunit RPT6a GI: 6652888 from [Arabidopsis thaliana]; almost identical to a member of conserved Sug1 CAD family AtSUG1 GI: 13537115 from {Arabidopsis thaliana} (68418.m02380) 4786 Not regulated NC-NC-NC 246154_at At5g19940 plastid-lipid associated protein PAP-related/fibrillin-related weak hit to Pfam profile PF04755: PAP_fibrillin (68418.m02372) 4787 Not regulated NC-NC-NC 246156_at At5g20090 expressed protein contains Pfam domain, PF03650: Uncharacterized protein family (UPF0041) (68418.m02392) 4788 Not regulated NC-NC-NC 246157_at At5g20080 NADH-cytochrome b5 reductase, putative similar to SP|P36080 NADH-cytochrome b5 reductase precursor (EC 1.6.2.2) {Saccharomyces cerevisiae}; contains Pfam profiles PF00175: Oxidoreductase NAD-binding domain, PF00970: oxidoreductase, FAD-binding (68418.m02391) 4789 Not regulated NC-NC-NC 246158_at At5g19855 expressed protein (68418.m02359) 4790 Not regulated NC-NC-NC 246124_at At5g20060 phospholipase/carboxylesterase family protein similar to lysophospholipase II [Mus musculus] GI: 4589453: contains Pfam profile PF02230: Phospholipase/Carboxylesterase family (68418.m02388) 4791 Not regulated NC-NC-NC 246109_at At5g20120 expressed protein (68418.m02395) 4792 Not regulated NC-NC-NC 246112_at At5g20200 nucleoporin-related contains weak similarity to Nucleoporin NUP1 (Nuclear pore protein NUP1) (Swiss-Prot: P20676) [Saccharomyces cerevisiae] (68418.m02406) 4793 Not regulated NC-NC-NC 246119_at At5g20350 zinc finger (DHHC type) family protein/ankyrin repeat family protein similar to patsas protein [Drosophila melanogaster] GI: 6002770; contains Pfam profiles PF00023: Ankyrin repeat, PF01529: DHHC zinc finger domain (68418.m02421) 4794 Not regulated NC-NC-NC 246098_at At5g20400 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to naringenin, 2-oxoglutarate 3-dioxygenase (flavonone-3-hydroxylase) [SP|Q06942][Malus domestica]; contains PF031712OG-Fe(II) oxygenate superfamily domain (68418.m02426) 4795 Not regulated NC-NC-NC 246068_at At5g20290 40S ribosomal protein S8 (RPS8A) ribosomal protein S8-Zea mays, PIR: T04088 (68418.m02415) 4796 Not regulated NC-NC-NC 246069_at At5g20220 zinc knuckle (CCHC-type) family protein contains Pfam domain, PF00098: Zinc knuckle (68418.m02407) 4797 Not regulated NC-NC-NC 246074_at At5g20130 expressed protein (68418.m02396) 4798 Not regulated NC-NC-NC 246089_at At5g20570 ring-box protein-related similar to ring-box protein 1 GI: 4769004 from [Homo sapiens] (68418.m02442) 4799 Not regulated NC-NC-NC 246090_at At5g20520 expressed protein (68418.m02438) 4800 Not regulated NC-NC-NC 246092_at At5g20500 glutaredoxin, putative similar to glutaredoxin [Populus tremula x Populus tremuloides] gi|19548658|gb|AAL90750 (68418.m02436) 4801 Not regulated NC-NC-NC 246062_at At5g19330 armadillo/beta-caterin repeat family protein/BTB/POZ domain-containing protein contains armadilio/beta-caterin-like repeats, Pfam: PF00514 and a BTB/POZ domain, Pfam: PF00651 (68418.m02303) 4802 Not regulated NC-NC-NC 246064_at At5g19350 RNA-binding protein 45 (RBP45), putative (68418.m02306) 4803 Not regulated NC-NC-NC 246040_at At5g19370 rhodanese-like domain-containing protein/PPIC-type PPIASE domain-containing protein low similarity to MPT-synthase suffurylase [Synechococcus sp. PCC 7942] GI: 2950364; contains Pfam profiles PF00581: Rhodanese-like domain, PF00639: PPIC-type PPIASE domain; identical to cDNA peptidyl-prolyl cis-trans isomerase GI: 2246379 (68418.m02308) 4804 Not regulated NC-NC-NC 246041_at At5g19290 esterase/lipase/thioesterase family protein low similarity to monoglyceride lipase [Homo sapiens] GI: 14594904; contains Interpro entry IPR000379 (68418.m02299) 4805 Not regulated NC-NC-NC 246044_at At5g19450 calcium-dependent protein kinase 19 (CDPK19) identical to calcium-dependent protein kinase [Arabidopsis thaliana] gi|836942|gb|AAA67655 (68418.m02317) 4806 Not regulated NC-NC-NC 246051_at At5g28840 NAD-dependent epimerase/dehydratase family protein similar to sugar epimerase BlmG from Streptomyces verticillus GI: 9937230; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family (68418.m03547) 4807 Not regulated NC-NC-NC 246055_at At5g08380 alpha-galactosidase, putative/melibiase, putative/alpha-D-galactoside galatohydrolase, putative similar to alpha-galactosidase SP: Q42658 from [Coffee arabica]; contains Pfam profile PF02065: Melibiase (68418.m00987) 4808 Not regulated NC-NC-NC 246057_at At5g08400 expressed protein predicted proteins, Arabidopsis thaliana and Synechocystis sp. (68418.m00989) 4809 Not regulated NC-NC-NC 246058_at At5g08430 SWIB complex BAF60b domain-containing protein/plus-3 domain-containing protein/GYF domain-containing protein similar to CPRF interacting protein [Petroselinum crispum] GI: 9588690; contains Ram profiles PF02201: BAR60b domain of the SWIB complex, PF03128: Plus-3 domain, PF02213: GYF domain; contains non-conensus AT-AC splice sites at intron 5 (68418.m00993) 4810 Not regulated NC-NC-NC 246059_at At5g08450 expressed protein KED, Nicotiana tabacum, EMBL: AB009883 (68418.m00995) 4811 Not regulated NC-NC-NC 246060_at At5g08420 expressed protein (68418.m00992) 4812 Not regulated NC-NC-NC 246033_at At5g08280 hydroxymethylbilane synthase/porphobilinogen deaminase, chloroplast/pre-uroporphyrinogen synthase identical to SP|Q43316 (68418.m00975) 4813 Not regulated NC-NC-NC 246036_at At5g08370 alpha-galactosidase, putative/melibiase, putative/alpha-D-galactoside galactohydrolase, putative similar to alpha-galactosidase SP: Q42656 from [Coffea arabica] (68418.m00986) 4814 Not regulated NC-NC-NC 246005_at At5g08415 lipoic acid synthase family protein similar to lipoic acid synthase from Arabidopsis thaliana [gi: 3928758], from Mus musculus [gi: 14669826] Pfam profile PF04055: radical SAM domain protein (68418.m00991) 4815 Not regulated NC-NC-NC 246006_at At5g08290 yellow-leaf-specific protein 8 (YLS8)/mitosis protein DIM1, putative contains Pfam domain PF02966: Mitosis protein DIM1; identical to cDNA YLS8 mRNA for Dim1 homolog GI: 13122293 (68418.m00976) 4816 Not regulated NC-NC-NC 246007_at At5g08410 ferredoxin-thioredoxin reductase, putative similar to ferredoxin-thioredoxin reductase, variable chain (FTR-V, Ferredoxin- thioredoxin reductase subunit A, FTR-A) [Zea mays] SWISS-PROT: P80680 (68418.m00990) 4817 Not regulated NC-NC-NC 246008_at At5g08320 expressed protein predicted proteins, Homo sapiens and Caenorhabditis elegans (68418.m00979) 4818 Not regulated NC-NC-NC 246015_at At5g10700 expressed protein (68418.m01239) 4819 Not regulated NC-NC-NC 246017_at At5g10730 expressed protein (68418.m01243) 4820 Not regulated NC-NC-NC 246020_at At5g10710 expressed protein (68418.m01240) 4821 Not regulated NC-NC-NC 246029_at At5g21090 leucine-rich repeat protein, putative similar to leucine rich repeat protein (LRP) GI: 1619300 from [Lycopersicon esculentum]; contains leucine rich-repeat (LRR) domains Pfam: PF00580, INTERPRO: IPR001611 (68418.m02511) 4822 Not regulated NC-NC-NC 246031_at At5g21160 La domain-containing protein/proline-rich family protein contains proline-rich extensin domains, INTERPRO: IPR002965, PF05383: La domain (68418.m02528) 4823 Not regulated NC-NC-NC 245975_at At5g13070 MSF1-like family protein similar to px19 [Gallus gallus] GI: 969170; contains Pfam profile PF04707: MSF1-like conserved region (68418.m01498) 4824 Not regulated NC-NC-NC 245980_at At5g13140 expressed protein (68418.m01505) 4825 Not regulated NC-NC-NC 245981_at At5g13100 expressed protein (68418.m01501) 4826 Not regulated NC-NC-NC 245983_at At5g13050 5-formyltetrahydrofolate cyclo-ligase (5-FCL) nearly identical to gi: 22087553 (68418.m01496) 4827 Not regulated NC-NC-NC 245984_at At5g13090 expressed protein predicted proteins - Arabidopsis thaliana (68418.m01500) 4828 Not regulated NC-NC-NC 245985_at At5g13120 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein contains Pfam domain, PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type (68418.m01503) 4829 Not regulated NC-NC-NC 245988_at At5g20610 expressed protein (68418.m02448) 4830 Not regulated NC-NC-NC 245989_s_at At5g20620 polyubiquitin (UBQ4) identical to GI: 17677 (68418.m02449) 4831 Not regulated NC-NC-NC 245993_at At5g20700 senescence-associated protein-related similar to senescence-associated protein SAG102 (GI: 22331931) [Arabidopsis thatiana]; (68418.m02458) 4832 Not regulated NC-NC-NC 245999_at At5g20650 copper transporter family protein similar to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis thaliana}; contains Pfam profile PF04145: Ctr copper transporter family (68418.m02453) 4833 Not regulated NC-NC-NC 246004_at At5g20630 gennin-like protein (GER3) identical to gennin-like protein subfamily 3 member 3 [SP|P94072] (68418.m02450) 4834 Not regulated NC-NC-NC 245972_at At5g20680 expressed protein predicted proteins, Arabidopsis thaliana (68418.m02456) 4835 Not regulated NC-NC-NC 245943_at At5g19500 tryptophan/tyrosine permease family protein contains Pfam profile PF03222: Tryptophan/tyrosine permease family (68418.m02323) 4836 Not regulated NC-NC-NC 245947_at At5g19530 spermine/spermidine synthase family protein similar to SP|P09158 Spermidine synthase (EC 25.1.16) (Putrescine aminopropyltransferase) {Escherichia coli}; contains Pfam profile PF01564: Spermine/spermidine synthase (68418.m02326) 4837 Not regulated NC-NC-NC 245948_at At5g19540 expressed protein (68418.m02327) 4838 Not regulated NC-NC-NC 245949_at At5g19510 elongation factor 1B alpha-subunit 2 (eEF1Balpha2) identical to elongation factor 1B alpha-subunit [Arabidopsis thaliana] GI: 6686821 (68418.m02324) 4839 Not regulated NC-NC-NC 245952_at At5g28500 expressed protein predicted proteins, Arabidopsis thaliana and Synechocystis sp. (68418.m03469) 4840 Not regulated NC-NC-NC 245957_at At5g19590 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538 (68418.m02332) 4841 Not regulated NC-NC-NC 245936_at At5g19850 hydrolase, alpha/beta fold family protein low similarity to hydrolase [Terrabacter sp: DBF63] GI: 14196240; contains Pfam profile PF00561: hydrolase, alpha/beta fold family (68418.m02358) 4842 Not regulated NC-NC-NC 245937_at At5g19750 peroxisomal membrane 22 kDa family protein similar to SP|P42925 22 kDa peroxisomal membrane protein {Mus musculus}; contains Pfam profile PF04117: Mpv17/PMP22 family (68418.m02348) 4843 Not regulated NC-NC-NC 245938_at At5g19680 leucine-rich repeat family protein contains leucine rich repeat (LRR) domains, Pfam: PF00560 (68418.m02341) 4844 Not regulated NC-NC-NC 245939_at At5g19760 dicarboxylate/tricarboxylate carrier (DTC) identical to dicarboxylate/tricarboxylate carrier [Arabidopsis thaliana] GI: 19913113 (68418.m02349) 4845 Not regulated NC-NC-NC 245940_at At5g19630 expressed protein (68418.m02336) 4846 Not regulated NC-NC-NC 245941_at At5g19820 PBS lyase HEAT-like repeat-containing protein contains Pfam profile: PF03130 PBS lyase HEAT-like repeat (68418.m02355) 4847 Not regulated NC-NC-NC 245912_at At5g19600 sulfate transporter, putative similar to sulfate transporter [Arabidopsis thaliana] GI: 2285885; contains Pfam profiles PF00916: Sulfate transporter family, PF01740: STAS domain; supporting cDNA gi|14141683|dbi|AB061739.1| (68418.m02333) 4848 Not regulated NC-NC-NC 245913_at At5g19860 expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538 (68418.m02361) 4849 Not regulated NC-NC-NC 245934_at At5g09330 no apical meristem (NAM) family protein similar to NAC1 (GI: 7716952) {Medicago truncatula}; contains Pfam PF02365: No apical meristem (NAM) protein (68418.m01081) 4850 Not regulated NC-NC-NC 245910_at At5g09410 calmodulin-binding protein similar to anther ethylene-upregulated calmodulin-binding protein ER1 GI: 11612392 from [Nicotiana tabacum] (68419.m01090) 4851 Not regulated NC-NC-NC 245886_at At5g09510 40S ribosomal protein S15 (RPS15D) ribosomal protein S15 - Arabidopsis thaliana, EMBL: Z23161 (68418.m01100) 4852 Not regulated NC-NC-NC 245887_at At5g09390 CD2-binding protein-related similar to CD2 cytoplasmic domain binding protein [Homo sapiens] GI: 3983427 (68418.m01088) 4853 Not regulated NC-NC-NC 245891_at At5g09220 amino acid permease 2 (AAP2) identical to amine acid permease AAP2 [Arabidopsis thaliana] GI: 510236 (68418.m01045) 4854 Not regulated NC-NC-NC 245893_at At5g09270 expressed protein (68418.m01071) 4855 Not regulated NC-NC-NC 245894_at At5g09310 expressed protein (68418.m01079) 4856 Not regulated NC-NC-NC 245900_at At5g11040 expressed protein weak similarity to hypercellular protein [Aspergillus nidulans] GI: 9309269 (68418.m01290) 4857 Not regulated NC-NC-NC 245905_at At5g11090 serine-rich protein-related contains some similarity to serine-rich proteins (68418.m01295) 4858 Not regulated NC-NC-NC 245848_at At5g13480 WD-40 repeat family protein similar to WD-repeat protein WDC146 (SP: Q9C0J8|) {Homo sapiens}; contains 3 weak Pfam PF00400: WD domain, G-beta repeats; (68418.m01554) 4859 Not regulated NC-NC-NC 245852_at At5g13510 ribosomal protein L10 family protein ribosomal protein L10- Nicotiana tabacum, EMBL: AB010879 (68418.m01560) 4860 Not regulated NC-NC-NC 245853_at At5g13500 expressed protein predicted protein At2g25260 - Arabidopsis thaliana, EMBL: AC007070 (68418.m01557) 4861 Not regulated NC-NC-NC 245855_at At5g13550 sulfate transporter family protein similar to sulfate transporter [Arabidopsis thaliana] GI: 3777483; contains Pfam profiles PF00916: Sulfate transporter family, PF01740: STAS domain (68418.m01565) 4862 Not regulated NC-NC-NC 245862_at At5g01010 expressed protein (68418.m00001) 4863 Not regulated NC-NC-NC 245866_s_at At1g57990 purine permease-related low similarity to purine permease [Arabidopsis thaliana] GI: 7620007; contains Pfam profile PF03151: Domain of unknown function, DUF250 (68414.m06572) 4864 Not regulated NC-NC-NC 245868_at At1g58032 4865 Not regulated NC-NC-NC 245876_at At1g26230 chaperonin, putative similar to SWISS-PROT: P08927-RuBisCO subunit binding-protein beta subunit, chloroplast precursor (60 kDa chaperonin beta subunit CPN-60 beta) [Pisum sativum]; contains Pfam: PF00118 domain, TCP-1/cpn60 chaperonin family (68414.m03200) 4866 Not regulated NC-NC-NC 245877_at At1g26220 GCN5-related N-acetyltransferase (GNAT) family protein low similarity to SP|P09453 Ribosomal-protein-alanine acetyltransferase (EC 2.3.1.128) {Escherichia coli}; contains Pfam profile PF00583: acetyltransferase, GNAT family (68414.m03199) 4867 Not regulated NC-NC-NC 245818_at At1g26100 cytochrome 8561 family protein contains Pfam domain, PF03188: Cytochrome b581 (68414.m03184) phosphatidylinositol 3- and 4-kinase family protein similar to phosphatidylinositol 4-kinase type-II beta [Homo sapiens] 4868 Not regulated NC-NC-NC 245821_at At1g26270 GI: 20159767; contains Pfam profile PF00454: Phosphatidylinositol 3- and 4-kinase (68414.m03205) 4869 Not regulated NC-NC-NC 245822_at At1g26110 expressed protein (68414.m03186) 4870 Not regulated NC-NC-NC 245825_at At1g57870 shaggy-related protein kinase kappa, putative/ASK-kappa, putative similar to shaggy-related protein kinase kappa SP: Q39019 GI: 717180 from [Arabidopsis thaliana] (68414.m06566) 4871 Not regulated NC-NC-NC 245841_s_at At1g58380 40S ribosomal protein S2 (RPS2A) similar to ribosomal protein S2 GI: 939717 from (Urechis caupo) (68414.m06642) 4872 Not regulated NC-NC-NC 245809_at At1g58440 squalene monooxygenase, putative/squalene epoxidase, putative similar to SP|O65404 (SE 1,1), SP|O65402 (SE 1,2) 6566341 dbi AB008021.1 AB008021 (68414.m06648) 4873 Not regulated NC-NC-NC 245786_at At1g32150 bZIP transcription factor family protein contains Pfam profile: PF00170 bZIP transcription factor (68414.m03955) 4874 Not regulated NC-NC-NC 245790_at At1g32200 glycerol-3-phosphate acyltransferase, chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH Glycerol-3-phosphate acyltransferase, chloroplast precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis thaliana}; contains Pfam profile PF01553: Acyltransferase (68414.m03960) 4875 Not regulated NC-NC-NC 245793_at At1g32220 expressed protein (68414.m03963) 4876 Not regulated NC-NC-NC 245756_at At1g35190 oxidoreductase, 2OG-Fe(II) oxygenase family protein low similarity to hyoscyamine 6-dioxygenase hydroxylase from Hyoscyannus niger [GB: P24397][SP|P24397], Atropa belladona [gi: 4996123]; contains Pfam domain PF03171, 2OG-Fe(II) oxygenase superfamily (68414.m04365) 4877 Not regulated NC-NC-NC 245760_s_at At1g66920 serine/threonine protein kinase, putative similar to receptor serine/threonine kinase PR55K gi|1235680|gb|AAC49208; contains protein kinase domain, Pfam: PF00069; contains serine/threonine protein kinase domain, INTERPRO: IPR002290 (68414.m07605) 4878 Not regulated NC-NC-NC 245761_at At1g66890 expressed protein (68414.m07602) 4879 Not regulated NC-NC-NC 245777_at At1g73540 MutT/nudix family protein low similarity to SP|Q09790 Diadenosine 5′,5″-P1,P6-hexaphosphate hydrolase (EC 3.6.1.—) (Ap6A hydrolase) {Schizosaccharomyces pombe}; contains Pfam profile PF00293: NUDIX domain (68414.m08512) 4880 Not regulated NC-NC-NC 245724_at At1g73390 expressed protein (68414.m08495) 4881 Not regulated NC-NC-NC 245729_at At1g73490 RNA recognition motif (RRM)-containing protein contains INTERPRO: IPR000504 RNA-binding region RNP-1 (RNA recognition motif) domain (68414.m08508) 4882 Not regulated NC-NC-NC 245730_at At1g73470 expressed protein (68414.m08505) 4883 Not regulated NC-NC-NC 245731_at At1g73500 mitogen-activated protein kinase kinase (MAPKK), putative (MKK9) mitogen-activated protein kinase kinase (MAPKK) family, PMID: 12119167 (68414.m08509) 4884 Not regulated NC-NC-NC 245732_at At1g73440 calmodulin-related low similarity to calmodulin 8 [Arabidopsis thaliana] GI: 5825600; contains Pfam profiles PF02809: Ubiquitin interaction motif, PF00036: EF hand (68414.m08501) 4885 Not regulated NC-NC-NC 245733_at At1g73380 expressed protein (68414.m08493) 4886 Not regulated NC-NC-NC 245740_at At1g44100 amino acid permease 5, putative (AAP5) nearly identical to amino acid permease (AAP5) GI.608673 from [Arabidopsis thaliana] (68414.m05094) 4887 Not regulated NC-NC-NC 245742_at At1g44170 aldehyde dehydrogenase, putative (ALDH) similar to aldehyde dehydrogenase ALDH [Craterostigma plantagineum] gi|17065918|emb|CAC84900 (68414.m05101) 4888 Not regulated NC-NC-NC 245746_at At1g51070 basic helix-loop-helix (bHLH) family protein similar to bHLH transcription factor GI: 3757520 from [Arabidopsis thaliana] (68414.m05741) 4889 Not regulated NC-NC-NC 245747_at At1g51100 expressed protein (68414.m05745) 4890 Not regulated NC-NC-NC 245694_at At5g04170 calcium-binding EF hand family protein low similarity to pefiln [Homo sapiens] GI: 6015440; contains INTERPRO:IPR002048 calcium-binding EF-hand domain (68416.m00405) 4891 Not regulated NC-NC-NC 245715_s_at At5g08690 ATP synthase beta chain 2, mitochondrial identical to SP|P83484 ATP synthase beta chain 2, mitochondrial precursor (EC 3.6.3.14) {Arabidopsia thaliana}; strong similarity to SP|P17614 ATP synthase beta chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana plumbaginifolia}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain; supporting cDNA gi|26452187|dbi|AK118582.1| (68418.m01034) 4892 Not regulated NC-NC-NC 245682_at At5g08750 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68418.m01039) 4893 Not regulated NC-NC-NC 245687_at At1g28320 protease-related similar to Protease degS [Precursor] (SP: P44947) [Haemophilus influenzae]; similar to DegP protease precursor (GI: 2565436) [Arabidopsis thaliana] (68414.m03475) 4894 Not regulated NC-NC-NC 245665_at At1g28250 expressed protein (68414.m03467) 4895 Not regulated NC-NC-NC 245666_at At1g28280 VQ motif-containing protein contains PF05678: VQ motif (68414.m03471) 4896 Not regulated NC-NC-NC 245667_at At1g28200 GRAM domain-containing protein/ABA-responsive protein-related similar to ABA-responsive protein [Hordeum vulgare] GI: 4103635; contains Pfam profile PF02893: GRAM domain (68414.m03461) 4897 Not regulated NC-NC-NC 245679_at At1g56590 clathrin adaptor complexes medium subunit family protein contains Pfam profile: PF00928 adaptor complexes medium subunit family (68414.m06508) 4898 Not regulated NC-NC-NC 245681_at At1g56560 beta-fructofuranosidase, putative/invertase, putative/saccharase, putative/beta-fructosidase, putative similar to neutral invertase [Daucus carota] GI: 4200165; contains Pfam profile PF04853: Plant neutral invertase (68414.m06505) 4899 Not regulated NC-NC-NC 245626_at At1g56700 pyrrolidone-carboxylate peptidase family protein similar to Pyrrolidone-carboxylate peptidase (5-oxoprolyl-peptidase) (Pyroglutamyl- peptidase I) (PGP-I) (Pyrase). (Swiss-Prot: O73944) [Pyrococcus furiosus]; similar to Pyrrolidone-carboxylate peptidase (5-oxoprolyl- peptidase) (Pyroglutamyl-peptidase I) (PGP-I). (Swiss-Prot: O07883) [Thermococcus litoralis]; contains Pfam PF01470: pyrrolidone- carboxylate peptidase (68414.m06521) 4900 Not regulated NC-NC-NC 245633_at At1g25280 F-box family protein/tubby family protein similar to Tubby protein homolog (SP: O88808) [Rattus norvegicus]; contains Pfam PF00646: F-box domain and Pfam PF01167: Tub family; (68414.m03137) 4901 Not regulated NC-NC-NC 245637_at At1g25230 purple acid phosphatase family protein contains Pfam profile PF00149 calcineurin-like phosphoesterase; similar to purple acid phosphatase (GI: 20257479) [Arabidopsis thaliana] (68414.m03131) 4902 Not regulated NC-NC-NC 245638_s_at At1g24996 expressed protein nearly identical to At1g25170, At1g25097, At1g24822; similar to ESTs dbj AV530941.1, dbj|AV530975.1, gb|BE037999.1, gb|BE037993.1, gb|AI995009.1, gb|AI099531.1, gb|N37906.1, gb|T76894.1 (68414.m03115) 4903 Not regulated NC-NC-NC 245639_at At1g25260 acidic ribosomal protein P0-related contains similarity to 60S acidic ribosomal protein GI: 5815233 from [Homo sapiens] (68414.m03134) 4904 Not regulated NC-NC-NC 245651_s_at At1g24793 UDP-3-0-acyl N-acetylglucosamine deacetylase family protein/F-box protein-related contains weak hit to TIGRFAM TIGR01640: F- box protein interaction domain and weak hit to Pfam PF00646: F-box domain; similar to ESTs dbj AV442495.1, gb|BE522756.1, gb|T42945.1, gb|BE525268.1, gb|BE523201.1, gb|BE526298.1, gb|T42945.1, gb|AA651584.1, dbj|AV552951.1, dbj|AV547151.1, dbi|AV563142.1 (68414.m03107) 4905 Not regulated NC-NC-NC 245600_at At4g14230 CBS domain-containing protein-related contains Pfam profile PF01595: Domain of unknown function (68417.m02196) 4906 Not regulated NC-NC-NC 245601_at At4g14240 expressed protein contains Pfam profile PF01595: Domain of unknown function (68417.m02197) 4907 Not regulated NC-NC-NC 245605_at At4g14300 heterogeneous nuclear ribonucleoprotein, putative/hnRNP, putative (68417.m02203) 4908 Not regulated NC-NC-NC 245532_at At4g15110 cytochrome P450 97B3, putative (CYP97B3) identical to Cytochrome P450 97B3 (SP: O23365) [Arabidopsis thaliana] (68417.m02322) 4909 Not regulated NC-NC-NC 245557_at At4g15410 UBX domain-containing protein low similarity to XY40 protein [Rattus norvegicus] GI: 2547025; contains Pfam profile PF00789: UBX domain (68417.m02355) 4910 Not regulated NC-NC-NC 245562_at At4g15520 tRNA/rRNA methyltransferase (SpoU) family protein similar to SP|P19396 tRNA (Guanosine-2′-O-)-methyltransferase (EC 2.1.1.34) {Escherichia coli O157: H7}; contains Pfam profile PF00588: SpoU rRNA Methylase (RNA methyltransferase. TrmH) family; contains non_consensus donor splice site TA at exon 4 (68417.m02371) 4911 Not regulated NC-NC-NC 245529_at At4g15570 tRNA-splicing endonuclease positive effector-related contains similarity to SEN1, a positive effector of tRNA-splicing endonuclease [Saccharomyces cerevisiae] gi|172574|gb|AAB63976 (68417.m02379) 4912 Not regulated NC-NC-NC 245513_at At4g15780 synaptobrevin-related family protein similar to Vesicle-associated membrane protein 722 (AtVAMP722) Synaptobrevin-related protein 1 (SP: P47192) {Arabidopsis thaliana} (68417.m02402) 4913 Not regulated NC-NC-NC 245525_at At4g15930 dynein light chain, putative similar to dynein light chain 2 [Mus musculus] GI: 15545995; contains Pfam profile PF01221: Dynein light chain type 1 (68417.m02419) 4914 Not regulated NC-NC-NC 245479_at At4g16140 proline-rich family protein contains proline-rich extensin domains, INTERPRO: IPR002965 (68417.m02445) 4915 Not regulated NC-NC-NC 245481_at At4g16170 expressed protein (68417.m02455) 4916 Not regulated NC-NC-NC 245484_at At4g16210 enoyl-CoA hydratase/isomerase family protein similar to 3-hydroxybutryl-CoA dehydratase (Crotonase) from Clostridium acetobutylicum [SP|P52046], FadB1x {enoyl-CoA hydratase} from Pseudomonas putida [GI: 13310130]; contains Pfam profile 4917 Not regulated NC-NC-NC 245493_at At4g16380 PF00378 enoyl-CoA hydratase/isomerase family protein (68417.m02460) expressed protein (68417.m02480) 4918 Not regulated NC-NC-NC 245494_at At4g16390 chloroplastic RNA-binding protein P67, putative nearly identical to 67 kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana] GI: 9755842 (68417.m02481) 4919 Not regulated NC-NC-NC 245446_at At4g16800 enoyl-CoA hydratase, putative similar to AU-binding protein/Enoyl-CoA hydratase [Homo sapiens] GI: 780241, [Mus musculus]GI: 6840920; contains Pfam profile PF00378 enoyl-CoA hydratase/isomerase family protein (68417.m02537) 4920 Not regulated NC-NC-NC 245456_at At4g16950 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein.; closest homolog in Col-0 to RPP5 of dutivar Landsberg erecta. (68417.m02556) 4921 Not regulated NC-NC-NC 245460_at At4g16990 disease resistance protein (TIR-NBS class), putative domain signature TIR-NBS exists, suggestive of a disease resistance protein. (68417.m02561) 4922 Not regulated NC-NC-NC 245463_at At4g17030 expansin-related identical to SWISS-PROT: O23547 expansin-related protein 1 precursor (At-EXPR1){Arabidopsis thaliana}; related to expansins, http://www.bio.psu.edu/expansins/(68417.m02569) 4923 Not regulated NC-NC-NC 245432_at At4g17100 4924 Not regulated NC-NC-NC 245433_at At4g17110 expressed protein; expression supported by MPSS (68417.m02577) 4925 Not regulated NC-NC-NC 245413_at At4g17300 asparaginyl-tRNA synthetase, chloroplast, mitochondrial/asparagine-tRNA ligase/AsnRS (SYNO) nearly identical to SP|O48593 (68417.m02598) 4926 Not regulated NC-NC-NC 245418_at At4g17370 oxidoreductase family protein weak similarity to SP|P26935 Myo-inositol 2-dehydrogenase (EC 1.1.1.18). {Bacillus subtilis}; contains Pfam profiles PF01408: Oxidoreductase family NAD-binding Rossmann fold, PF02894: Oxidoreductase family C-terminal alpha/beta domain (68417.m02604) 4927 Not regulated NC-NC-NC 245425_at At4g17510 ubiquitin carboxyl-terminal hydrolase, putative/ubiquitin thiotesterase, putative similar to SP|Q9JKB1 Ubiquitin carboxyl-terminal hydrolase isozyme L3 (EC 3.4.19.12) (UCH-L3) (Ubiquitin thiolesterase L3) {Mus musculus}; contains Pfam profile PF01088: Ubiquitin carboxyl-terminal hydrolase, family 1 (68417.m02620) 4928 Not regulated NC-NC-NC 245426_at At4g17540 expressed protein (68417.m02623) 4929 Not regulated NC-NC-NC 245374_at At4g17620 glycine-rich protein (68417.m02636) 4930 Not regulated NC-NC-NC 245382_at At4g17800 DNA-binding protein-related contains Pfam domain PF03479: Domain of unknown function (DUF296), found in AT-hook motifs Pfam: PF02178 (68417.m02658) 4931 Not regulated NC-NC-NC 245383_at At4g17810 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type (68417.m02857) 4932 Not regulated NC-NC-NC 245385_at At4g14020 rapid alkalinization factor (RALF) family protein (68417.m02167) 4933 Not regulated NC-NC-NC 245390_at At4g17650 aromatic-rich family protein contains Pfam PF03654: Aromatic-Rich Protein Family (68417.m02638) 4934 Not regulated NC-NC-NC 245394_at At4g16450 expressed protein (68417.m02492) 4935 Not regulated NC-NC-NC 245395_at At4g17420 expressed protein contains Pfam domain, PF01987: Protein of unknown function (68417.m02608) 4936 Not regulated NC-NC-NC 245396_at At4g14870 expressed protein (68417.m02284) 4937 Not regulated NC-NC-NC 245400_at At4g17040 ATP-dependent Clp protease proteolytic subunit, putative similar to ATP-dependent Clp protease proteolytic subunit GI: 7264063 from [Synechococcus sp.PCC 7942] (68417.m02570) 4938 Not regulated NC-NC-NC 245342_at At4g16720 60S ribosomal protein L15 (RPL15A) (68417.m02526) 4939 Not regulated NC-NC-NC 245344_at At4g15475 F-box family protein (FBL4) 99.7% identical to F-box protein family, AtFBL4 (GP: 21536497) [Arabidopsis thaliana]; similar to grr1 GI: 2407790 from [Glycine max] (68417.m02365) 4940 Not regulated NC-NC-NC 245348_at At4g17770 glycosyl transferase family 20 protein/trehalose-phosphatase family protein contains Pfam profile PF02358 trehalose- phosphatase (68417.m02652) 4941 Not regulated NC-NC-NC 245349_at At4g16690 esterase/lipase/thioesterase family protein similar to ethylene-induced esterase [Citrus sinensis] GI: 14279437, polyneuridine aldehyde esterase [Rauvolfia serpentina] GI: 6651393, SP|Q40708 PIR7A protein {Oryza sativa}; contains Interpro entry IPR000379 (68417.m02520) 4942 Not regulated NC-NC-NC 245351_at At4g17640 casein kinase II beta chain, putative similar to casein kinase II beta chain (CK II) [Arabidopsis thaliana] SWISS-PROT: P40229 (68417.m02637) 4943 Not regulated NC-NC-NC 245352_at At4g15490 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase; simalr to UDP-glucose:sinapate glucosyltransferase GI: 9794913 from [Brassica napus] (68417.m02367) 4944 Not regulated NC-NC-NC 245354_at At4g17600 lil3 protein identical to Lil3 protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780 (68417.m02632) 4945 Not regulated NC-NC-NC 245355_at At4g17390 60S ribosomal protein L15 (RPL15B) (68417.m02606) 4946 Not regulated NC-NC-NC 245357_at At4g17560 ribosomal protein L19 family protein similar to plastid ribosomal protein L19 precursor [Spinacia oleracea] gi|7582403|gb|AAF64312 (68417.m02625) 4947 Not regulated NC-NC-NC 245358_at At4g15900 PP1/PP2A phosphatases pleiotropic regulator 1 (PRL1) identical to PP1/PP2A phosphatases pleiotropic regulator PRL1 (SP: Q42384) [Arabidopsis thaliana], PRL1 [Arabidopsis thaliana] GI: 577733; contains Pfam PF00400: WD domain, G-beta repeat (7 copies) (68417.m02416) 4948 Not regulated NC-NC-NC 245359_at At4g14430 enoyl-CoA hydratase/isomerase family protein low siimilarity to 2-cyclohexenylcarbonyl CoA isomerase [Streptomyces collinus] GI: 8133118, enoyl-CoA isomerase [Escherichia coli] GI: 2764829; contains Pfam profile PF00378 enoyl-CoA hydratase/isomerase family protein (68417.m02226) 4949 Not regulated NC-NC-NC 245360_at At4g16330 oxidoreductase, 2OG-Fe(II) oxygenase (family protein similar to flavonone-3-hydroxylase (naringenin,2-oxoglutarate 3-dioxygenase) from Malus domestica [SP|Q06942], Pyrus communis [GI: 20269881]; contains Pfam domain PF03171, 2OG-Fe(II) oxygenase superfamily (68417.m02475) 4950 Not regulated NC-NC-NC 245361_at At4g17790 expressed protein (68417.m02655) 4951 Not regulated NC-NC-NC 245362_at At4g17460 homeobox-leucine zipper protein 1 (HAT1)/HD-ZIP protein 1 identical to Homeobox-leucine zipper protein HAT1 (SP: P46600) [Arabidopsis thaliana] (68417.m02612) 4952 Not regulated NC-NC-NC 245365_at At4g17720 RNA recognition motif (RRM)-containing protein (68417.m02046) 4953 Not regulated NC-NC-NC 245366_at At4g14965 cytochrome b5 domain-containing protein similar to SP|Q15173 Membrane associated progesterone receptor component 2 (Steroid receptor protein DG6) {Homo sapiens}; contains Pfam profile PF00173: Heme/Steroid binding domain (68417.m02300) 4954 Not regulated NC-NC-NC 245368_at At4g15510 photosystem II reaction center PsbP family protein contains PsbP domain PF01789; identical to SP: O23403 {Arabidopsis thaliana} (68417.m02369) 4955 Not regulated NC-NC-NC 245370_at At4g16840 expressed protein (68417.m02542) 4956 Not regulated NC-NC-NC 245373_s_at At4g14716 iron-deficiency-responsive protein, putative strong similarity to iron-deficiency induced gene [Hordeum vulgare] GI: 14522834; contains Pfam profile PF03079: ARD/ARD family (68417.m02263) 4957 Not regulated NC-NC-NC 245340_at At4g14420 lesion inducing protein-related similar to ORF, able to induce HR-like lesions [Nicotiana tabacum] gi|1762945|gb|AAC49975 (68417.m02225) 4958 Not regulated NC-NC-NC 245316_at At4g14000 expressed protein (68417.m02165) 4959 Not regulated NC-NC-NC 245320_at At4g16444 expressed protein (68417.m02490) 4960 Not regulated NC-NC-NC 245321_at At4g15545 expressed protein (68417.m02375) 4961 Not regulated NC-NC-NC 245324_at At4g17260 L-lactate dehydrogenase, putative strong similarity to L-lactate dehydrogenase from Lycopersicon esculentum (GI: 1620970, GI: 1620972), Hordeum vulgare (SP|P22988, SP|P22989); contains InterPro entry IPR001236: Lactate/malate dehydrogenase (68417.m02595) 4962 Not regulated NC-NC-NC 245325_at At4g14130 xyloglucan:xyloglucosyl transferase, putative/xyloglucan endotransglycosylase, putative/endo-xyloglucan transferase, putative (XTR7) almost identical to xyloglucan andotransglycosylase-related protein XTR7 GI: 1244760 from [Arabidopsis thaliana], one amino acid difference (68417.m02180) 4963 Not regulated NC-NC-NC 245328_at At4g14465 DNA-binding protein-related contains Pfam domain PF03479: Domain of unknown function (DUF296), found in AT-hook motifs Pfam: PF02178 (68417.m02231) 4964 Not regulated NC-NC-NC 245330_at At4g14930 acid phosphatase survival protein SurE, putative similar to Swiss-Prot: P36664 acid phosphatase surE (EC 3.1.3.2) (Stationary- phase survival protein surE) [Escherichia coli O157: H7]; contains Pfam domain PF01975: Survival protein SurE (68417.m02293) 4965 Not regulated NC-NC-NC 245331_at At4g14410 basic helix-loop-helix (bHLH) family protein (68417.m02223) 4966 Not regulated NC-NC-NC 245332_at At4g15940 fumarylacetoacetate hydrolase family protein contains Pfam domain, PF01557: fumarylacetoacetate hydrolase family protein (68417.m02420) 4967 Not regulated NC-NC-NC 245333_at At4g14615 expressed protein (68417.m02249) 4968 Not regulated NC-NC-NC 245334_at At4g15800 rapid alkalinization factor (RALF) family protein similar to RALF precursor [Nicotiana tabacum] GI: 16566316 (68417.m02404) 4969 Not regulated NC-NC-NC 245336_at At4g16515 expressed protein (68417.m02499) 4970 Not regulated NC-NC-NC 245337_at At4g16566 histidine triad family protein/HIT family protein contains Pfam domain, PF01230: HIT family (histidine triad protein family) (68417.m02507) 4971 Not regulated NC-NC-NC 245307_at At4g16770 oxidoreductase, 2OG-Fe(II) oxygenase family protein low similarity to flavonol synthase from Petunia hybrida [SP|Q07512], Citrus unshiu [GI: 4126403]; contains Pfam domain PF03171, 2OG-Fe(II) oxygenase superfamily; non-consensus GG acceptor splice site at exon 8 (68417.m02534) 4972 Not regulated NC-NC-NC 245308_at At4g17486 expressed protein (68417.m02616) 4973 Not regulated NC-NC-NC 245279_at At4g17270 Mo25 family protein similar to MO25 protein (early mouse development protein family) [Mouse] SWISS-PROT: Q06138 (68417.m02596) 4974 Not regulated NC-NC-NC 245280_at At4g16845 vernalization 2 protein (VRN2) identical to vernalization 2 protein [Arabidopsis thaliana] gi|16945788|gb|AAL32135 (68417.m02543) 4975 Not regulated NC-NC-NC 245284_at At4g14210 phytoene dehydrogenase, chloroplast/phytoene desaturase (PDS) identical to SP|Q07356 Phytoene dehydrogenase, chloroplast precursor (EC 1.14.99.—) (Phytoene desaturase){Arabidopsis thaliana}; high similarity to phytoene desaturase [Lycopersicon esculentum][GI: 19287] (68417.m02192) 4976 Not regulated NC-NC-NC 245285_s_at At4g14040 selenium-binding protein, putative contains Pfam profile PF05694: 56 kDa selenium binding protein (SBP56); similar to Putative selenium-binding protein (Swiss-Prot; O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI: 15485232) [Arabidopsis thaliana) (68417.m02169) 4977 Not regulated NC-NC-NC 245286_at At4g14880 cysteine synthase/O-acetylserine (thiol)-lyase/O-acetylserine sulfhydrylase (OAS1) nearly identical to SP|P47996 Cysteine synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) {Arabidopsis thaliana}; identical to cDNA O- acetylserine lyase (At.OAS.5-8) GI: 6983573 (68417.m02285) 4978 Not regulated NC-NC-NC 245287_at At4g14910 imidazoleglycerol-phosphate dehydratase, putative similar to SP|P34047 Imidazoleglycerol-phosphate dehydratase 1 (EC 4.2.1.19) (IGPD 1) {Arabidopsis thaliana}; contains Pfam profile PF00475: imidazoleglycerol-phosphate dehydratase (68417.m02291) 4979 Not regulated NC-NC-NC 245291_at At4g16155 dihydrolipoamide dehydrogenase 2, plastidic/lipoamide dehydrogenase 2 (PTLPD2) identical to plastidic lipoamide dehydrogenase from Arabidopsis thaliana [gi: 7159284] (68417.m02451) 4980 Not regulated NC-NC-NC 245292_at At4g15093 catalytic LigB subunit of aromatic ring-opening dioxygenase family contains Pfam PF02900: Catalytic LigB subunit of aromatic ring- opening dioxygenase (68417:m02319) 4981 Not regulated NC-NC-NC 245295_at At4g16100 expressed protein (68417.m02441) 4982 Not regulated NC-NC-NC 245296_at At4g16370 oligopeptide transporter OPT family protein similar to oligopeptide transporter Opt1p [Candida albicans] GI: 2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein (68417.m02479) 4983 Not regulated NC-NC-NC 245297_at At4g16510 YbaK/prolyl-tRNA synthetase-related contains weak hit to Pfam profile PF04073: YbaK/prolyl-tRNA synthetases associated domain (68417.m02498) 4984 Not regulated NC-NC-NC 245299_at At4g17530 Ras-related GTP-binding protein, putative very strong similarity to RAB1C [Lotus comiculatus var. japonicus] GI: 1370166; contains Pfam profile PF00071: Ras family (68417.m02622) 4985 Not regulated NC-NC-NC 245278_at At4g17730 syntaxin 23 (SYP23)/PEP12-like protein identical to SP|O04378 Syntaxin 23 (AtSYP23) (AtPLP) (AtPEP12-like protein) {Arabidopsis thaliana} (68417.m02647) 4986 Not regulated NC-NC-NC 245249_at At4g16760 acyl-CoA oxidase (ACX1) identical to acyl-CoA oxidase [Arabidopsis thaliana] GI: 3044214 (68417.m02531) 4987 Not regulated NC-NC-NC 245260_at At4g16360 5′-AMP-activated protein kinase beta-2 subunit, putative similar to Swiss-Prot: Q9OZH4 5′-AMP-activated protein kinase, beta-2 subunit (AMPK beta-2 chain) [Rattus norvegicus] (68417.m02478) 4988 Not regulated NC-NC-NC 245265_at At4g14400 ankyrin repeat family protein contains ankyrin repeats, Pfam domain PF00023 (68417.m02220) 4989 Not regulated NC-NC-NC 245269_at At4g14500 expressed protein weak similarity to SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP) {Homo sapiens} (68417.m02235) 4990 Not regulated NC-NC-NC 245216_at At4g16143 importin alpha-2, putative (IMPA-2) similar to importin alpha 2 [Capsicum annuum] GI: 13752582; contains Pfam profiles PF01749: Importin beta binding domain, PF00514: Armadillo/beta-catenin-like repeat; non-consensus GG donor splice site at exon 1 and 6; CT acceptor splice site at exon 2 (68417.m02447) 4991 Not regulated NC-NC-NC 245219_at At1g59124 disease resistance protein (CC-NBS-LRR class), putative/PRM1 homolog, putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein; identical to cDNA RXF10 mRNA for PRM1 homolog, partial cds GI: 6520172; contains Pfam profiles PF00931: NB-ARC domain and PF00560: Leucine Rich Repeat (68414.m06672) 4992 Not regulated NC-NC-NC 245228_at At3g29810 phytochelatin synthetase family protein/COBRA cell expansion protein COBL2 similar to phytochelatin synthetase [Hordeum vulgare subsp. vulgare] GI: 29570314; identified in Roudier, et al, Plant Phys. (2002) 130: 538-548 (PMID: 12376623); contains Pfam profile PF04833: Phytochelatin synthetase-like conserved region (68416.m03794) 4993 Not regulated NC-NC-NC 245229_at At4g25620 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO: IPR002965; Common family member At5g52430 [Arabidopsis thaliana]; (68417.m03690) 4994 Not regulated NC-NC-NC 245235_at At4g25550 expressed protein (68417.m03683) 4995 Not regulated NC-NC-NC 245236_at At4g25540 DNA mismatch repair protein MSH3 (MSH3) identical to SP|O65607 DNA mismatch repair protein MSH3 (AtMsh3) {Arabidopsis thaliana} (68417.m03682) 4996 Not regulated NC-NC-NC 245238_at At4g25570 cytochrome B561 family protein contains Pfam domain, PF03188: Cytochrome b561 (68417.m03685) 4997 Not regulated NC-NC-NC 245242_at At1g44446 chlorophyll a oxygenase (CAO)/chlorophyll b synthase identical to chlorophyll a oxygenase GI: 5853117 from [Arabidopsis thaliana]; contains Pfam PF00355 Rieske [2Fe—2S] domain (68414.m05113) 4998 Not regulated NC-NC-NC 245213_at At1g44575 photosystem II 22 kDa protein, chloroplast/CP22 (PSBS) identical to photosystem II 22 kDa protein, chloroplast [precursor] SP: Q9XF91 from [Arabidopsis thaliana]; contains Pfam profile PF00504: Chlorophyll A-B binding protein (68414.m05119) 4999 Not regulated NC-NC-NC 245187_s_at At1g67680 expressed protein (68414.m07723) 5000 Not regulated NC-NC-NC 245195_at At1g67740 photosystem II core complex proteins psbY, chloroplast (PSBY)/L-arginine metabolising enzyme identical to SP: O49347 Photosystem II core complex proteins psbY, chloroplast precursor (L-arginine metabolising enzyme) (L-AME) [Contains: Photosystem II protein psbY-1 (psbY-A1); Photosystem II protein psbY-2 (psbY-A2)] [Arabidopsis thaliana] (68414:m07730) 5001 Not regulated NC-NC-NC 245198_at At1g67700 expressed protein (68414.m07725) 5002 Not regulated NC-NC-NC 245199_at At1g67730 b-keto acyl reductase, putative (GLOSSY8) similar to b-keto acyl reductase GI: 2586127 from [Hordeum vulgare] (68414.m07729) 5003 Not regulated NC-NC-NC 245200_at At1g67850 expressed protein contains Pfam profile PF05212: Protein of unknown function (DUF707) (68414.m07745) 5004 Not regulated NC-NC-NC 245207_at At5g12310 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) (68418.m01447) 5005 Not regulated NC-NC-NC 245209_at At5g12340 expressed protein; expression supported by MPSS (68418.m01452) 5006 Not regulated NC-NC-NC 245178_at At5g12390 expressed protein (68418.m01457) 5007 Not regulated NC-NC-NC 245180_at At5g12410 THUMP domain-containing protein contains Pfam profile PF02926: THUMP domain (68418.m01459) 5008 Not regulated NC-NC-NC 245181_at At5g12420 expressed protein (68418.m01460) 5009 Not regulated NC-NC-NC 245155_at At5g12470 expressed protein (68418.m01465) 5010 Not regulated NC-NC-NC 245165_at At2g33180 expressed protein (68415.m04065) 5011 Not regulated NC-NC-NC 245167_s_at At2g33120 synaptobrevin-related protein/vesicle-associated membrane protein 722 (VAMP722) (SAR1) identical to r to Vesicle-associated membrane protein 722 (AtVAMP722) Synaptobrevin-related protein 1 (SP: P47192) {Arabidopsis thaliana}; identical to cDNA synaptobrevin-related protein (SAR1) GI: 600709 (68415.m04060) 5012 Not regulated NC-NC-NC 245169_at At2g33220 expressed protein (68415.m04070) 5013 Not regulated NC-NC-NC 245172_at At2g47540 pollen Ole e 1 allergen and extensin family protein contains Pfam domain, PF01190: Pollen proteins Ole e I family (68415.m05933) 5014 Not regulated NC-NC-NC 245152_at At2g47490 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein (68415.m05928) 5015 Not regulated NC-NC-NC 245121_at At2g47610 60S ribosomal protein L7A (RPL7aA) (68415.m05940) 5016 Not regulated NC-NC-NC 245122_at At2g47420 dimethyladenosine transferase, putative similar to SP|P41819 Dimethyladenosine transferase (EC 2.1.1.—) (S-adenosylmethionine-6 N′,N′-adenosyl(rRNA) dimethyltransferase) {Saccharomyces cerevisiae}; contains Pfam profile PF00398: ribosomal RNA adenine dimethylase family protein (68415.m05919) 5017 Not regulated NC-NC-NC 245124_at At2g47580 small nuclear ribonucleoprotein U1A/spliceosomal protein U1A/U1snRNP-specific protein identical to GB: Z49991 U1snRNP- specific protein [Arabidopsis thaliana] (68415.m05937) 5018 Not regulated NC-NC-NC 245127_at At2g47600 magnesium/proton exchanger (MHX1) identical to magnesium/proton exchanger AtMHX [Arabidopsis thaliana] gi|6492237|gb|AAF14229; Ca2+; Cation Antiporter (CaCA) Family member PMID: 11500563 (68415.m05939) 5019 Not regulated NC-NC-NC 245131_s_at At2g45330 tRNA 2′phosphotransferase, putative contains similarity to Swiss-Prot: Q12272 tRNA 2′phosphotransferase [Saccharomyces cerevisiae]; contains Pfam domain PF01885: RNA 2′-phosphotransferase, Tpt1/KptA family (68415.m05641) 5020 Not regulated NC-NC-NC 245136_at At2g45210 auxin-responsive protein-related weakly similar to small auxin up RNA (GI: 546362) {Arabidopsis thaliana} (68415.m05629) 5021 Not regulated NC-NC-NC 245144_at At2g45240 methionyl aminopeptidase, putative/methionine aminopeptidase, putative/peptidase M. putative similar to SP|Q01662 Methionine aminopeptidase 1 precursor (EC 3.4.11.18) {Saccharomyces cerevisiae}; contains Pfam profile PF00557: metallopeptidase family M24 (68415.m05632) 5022 Not regulated NC-NC-NC 245146_at At2g45200 Golgi SNARE 12 protein/Golgi SNAP receptor complex member 1 identical to Probable 28 kDa Golgi SNARE protein (Golgi SNAP receptor complex member 1) (SP: O22151) {Arabidopsis thaliana} (68415.m05628) 5023 Not regulated NC-NC-NC 245148_at At2g45220 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase (68415.m05830) 5024 Not regulated NC-NC-NC 245090_at At2g40900 nodulin MtN21 family protein similar to MtN21 [Medicago truncatula] GI: 2598575; contains Pfam profile PF00892: Integral membrane protein (68415.m05047) 5025 Not regulated NC-NC-NC 245097_at At2g40935 expressed protein low similarity to PGPS/D12 [Petunia x hybrida] GI: 4105794; contains Pfam profile PF04749: Protein of unknown function, DUF614 (68415.m05053) 5026 Not regulated NC-NC-NC 245098_at At2g40940 ethylene response sensor/ethylene-responsive sensor (ERS) identical to ethylene response sensor (ERS) [Arabidopsis thaliana] GI: 1048225 (68415.m05055) 5027 Not regulated NC-NC-NC 245115_at At2g41530 esterase, putative similar to SP|P10768 Esterase D (EC 3.1.1.1) {Homo sapiens}; contains Pfam profile: PF00756 putative esterase (68415.m05143) 5028 Not regulated NC-NC-NC 245116_at At2g41620 nucleoporin interacting component family protein contains Pfam profile PF04097: Nucleoporin interacting component (68415.m05143) 5029 Not regulated NC-NC-NC 245118_at At2g41680 thioredoxin reductase, putative/NADPH-dependent thioredoxin reductase, putative The last 2 exons encode thioredoxin. There is an EST match to exons 5-7, and the distance between exon 7 and exon 8 is only 90 bp. It is unlikely this is two separate genes, but more likely a hybrid protein. (68415.m05149) 5030 Not regulated NC-NC-NC 245059_at At2g39720 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) (68415.m04874) 5031 Not regulated NC-NC-NC 245060_at At2g39770 GDP-mannose pyrophosphorylase (GMP1) identical to GDP-mannose pyrophosphorylase from Arabidopsis thaliana [GI: 3598958]; updated per Conklin PL et al, PNAS 1999, 96(7): 4198-203 (68415.m04883) 5032 Not regulated NC-NC-NC 245061_at At2g39730 ribulose bisphosphate carboxylase/oxygenase activase/RuBisCO activase identical to SWISS-PROT: P10896 ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase, RA)[Arabidopsis thaliana] (68415.m04677) 5033 Not regulated NC-NC-NC 245062_at At2g39760 speckle-type POZ protein-related contains Pfam PF00651: BTB/POZ domain; contains Pfam PF00917: MATH domain; similar to Speckle-type POZ protein (SP: O43791) [Homo sapiens] (68415.m04882) 5034 Not regulated NC-NC-NC 245067_at At2g39780 ribonuclease 2 (RNS2) identical to ribonuclease 2 precursor SP: P42814, GI: 289210; contains a ribonuclease T2 family histidine active site signature (PDOC00459) (68415.m04884) 5035 Not regulated NC-NC-NC 245083_at At2g23310 RER1C protein identical to SP|Q9ZW17 RER1C protein (AtRER1C) {Arabidopsis thaliana} (68415.m02782) 5036 Not regulated NC-NC-NC 245085_at At2g23350 polyadenylate-binding protein, putative/PABP, putative (68415.m02788) 5037 Not regulated NC-NC-NC 245039_at At2g26600 glycosyl hydrolase family 17 protein (68415.m03191) 5038 Not regulated NC-NC-NC 245042_at At2g26540 uroporphyrinogen-III synthase family protein contains Pfam PF02602: uroporphyrinogen-III synthase; weak similarity to Porphyrin biosynthesis protein HEMD)) (Uroporphyrinogen III methylase) (UROM); Uroporphyrinogen-III synthase (EC 4.2.1.75) (Swiss- Prot: Q59294) [Clostridium josui] (68415.m03184) 5039 Not regulated NC-NC-NC 245043_at At2g26430 ania-6a type cyclin (RCY1) nearly identical to ania-6a type cyclin [Arabidopsis thaliana] GI: 13924511 (68415.m03171) 5040 Not regulated NC-NC-NC 245045_at At2g26590 adhesion regulating molecule family similar to oocyte membrane protein (GI: 6174842) [Xenopus laevis]; similar to Adhesion regulating molecule 1 precursor (110 kDa cell membrane glycoprotein) (Gp110) (Swiss-Prot: Q16186) [Homo sapiens]; contains Pfam PF04683: Adhesion regulating molecule conserved region (68415.m03190) 5041 Not regulated NC-NC-NC 245023_at psbl PSII I protein 5042 Not regulated NC-NC-NC 245025_at atpF ATPase I subunit 5043 Not regulated NC-NC-NC 244999_at rpoB RNA polymerase beta subunit 5044 Not regulated NC-NC-NC 245002_at psbD PSII D2 protein 5045 Not regulated NC-NC-NC 245005_at rps14 ribosomal protein S14 5046 Not regulated NC-NC-NC 245013_at atpE ATPase epsilon subunit 5047 Not regulated NC-NC-NC 245019_at ycf10_cemA hypothetical protein 5048 Not regulated NC-NC-NC 244969_at rps18 ribosomal protein S18 5049 Not regulated NC-NC-NC 244986_at rps19 ribosomal protein S19 5050 Not regulated NC-NC-NC 244936_at ndhA NADH dehydrogenase ND1 5051 Not regulated NC-NC-NC 244938_at rps15 ribosomal protein S15 5052 Not regulated NC-NC-NC 244951_s_at ccb452 cytochrome c biogenesis orf452 5053 Not regulated NC-NC-NC 257377_at At2g28890 protein phosphatase 2C family protein/PP2C family protein similar to protein phosphatase-2c (GI: 3808412) [Mesembryanthemum crystallinum]; contains Pfam PF00481: Protein phosphatase 2C domain (68415.m03511) 5054 Not regulated NC-NC-NC 257407_at At1g27100 expressed protein contains Pfam profile: PF04601 protein of unknown function (DUF569 (68414.m03303) 5055 Not regulated NC-NC-NC 257410_at At1g24340 monooxygenase family protein similar to polyketide hydroxylases from several bacterial species; contains Pfam: PF01360 [Monooxygenase] (68414.m03070) 5056 Not regulated NC-NC-NC 257431_at At2g36360 ketch repeat-containing protein low similarity to mgB protein, Dictyostelium discoideum, PIR: S68824; contains Pfam profile PF01344: Ketch motif (68415.m04462) 5057 Not regulated NC-NC-NC 257435_at At2g24590 splicing factor, putative similar to to RSZp22 protein [Arabidopsis thaliana] gi|2582645|emb|CAA05352 (68415.m02936) 5058 Not regulated NC-NC-NC 257444_at At2g12550 ubiquitin-associated (UBA)/TS-N domain-containing protein low similarity to NUB1 (NEDD8-interacting protein) [Homo sapiens] GI: 13383476; contains Pfam profile PF00627: UBA/TS-N domain (68415.m01357) 5059 Not regulated NC-NC-NC 257463_at At1g14820 SEC14 cytosolic factor family protein/phosphoglyceride transfer family protein contains Pfam PF00650: CRAL/TRIO domain; similar to phosphatidylinositol/phosphatidylcholine transfer protein SP: P24260 [Saccharomyces cerevisiae (Baker's yeast)] (68414.m01771) 5060 Not regulated NC-NC-NC 257477_at At1g10660 expressed protein (68414.m01208) 5061 Not regulated NC-NC-NC 257485_at At1g63580 protein kinase-related (68414.m07187) 5062 Not regulated NC-NC-NC 257495_at At1g07960 thioredoxin family protein low similarity to protein disulfide isomerase 4 [Giardia intestinalis] GI: 13489047; contains Pfam profile PF00085: Thioredoxin (68414.m00865) 5063 Not regulated NC-NC-NC 257510_at At1g55360 expressed protein contains Pfam profile PF03080: Arabidopsis proteins of unknown function (68414.m06327) 5064 Not regulated NC-NC-NC 257513_s_at At1g12340 cornichon family protein contains Pfam profile: PF03311 cornichon protein (68414.m01426) 5065 Not regulated NC-NC-NC 257516_at At1g69040 ACT domain containing protein (ACR4) low similarity to uridylyltransferase [Gluconacetobacter diazotrophicus] GI: 17226253; contains Pfam profile PF01842: ACT domain (68414.m07899) 5066 Not regulated NC-NC-NC 257519_at At3g01210 RNA recognition motif (RRM)-containing protein (68416.m00027) 5067 Not regulated NC-NC-NC 257553_at At3g16830 WD-40 repeat family protein contains 10 WD-40 repeats (PF00400) (1 weak) (68416.m02149) 5068 Not regulated NC-NC-NC 257560_at At3g14960 galactosyltransferase family protein contains Pfam profile: PF01762 galactosyltransferase (68416.m01892) 5069 Not regulated NC-NC-NC 257571_at At3g16870 zinc finger (GATA type) family protein contains Pfam profile: PF00320 GATA; GATA zinc finger (68416.m02157) 5070 Not regulated NC-NC-NC 257583_at At1g66480 expressed protein (68414.m07552)

indicates data missing or illegible when filed 

1. A transgenic plant that ectopically expresses one or more nitrogen-responsive master regulatory genes and exhibits increased nitrogen-assimilation capacity.
 2. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes myb family transcription factor (At1g74840).
 3. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes CCA1 (At2g46830).
 4. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes GLK1 (At2g20570).
 5. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes MYB73 (At4g37260).
 6. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes bZIP9 transcription factor family protein (At5g24800).
 7. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes bZIP1 family transcription factor (At5g49450).
 8. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes proline-rich family protein (At5g14540).
 9. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes zinc finger (C3HC4-type RING finger) family protein (At5g48655).
 10. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes TGA3 (At1g22070).
 11. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes proline-rich family protein (At3g01560).
 12. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes HB-6 (At2g22430).
 13. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes GLK2 (At5g44190).
 14. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes RAP2.6 (At1g43160).
 15. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes HB-12 (At3g61890).
 16. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes AP2 domain-containing transcription factor family protein similar to RAP2.6 (At5g61890).
 17. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes homeobox-leucine zipper family protein (At3g61150).
 18. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes WRKY family transcription factor (At2g38470).
 19. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes ERF1 (At4g17500).
 20. The transgenic plant of claim 1, wherein said one or more nitrogen-responsive master regulatory genes comprises a polynucleotide that encodes WRKY family transcription factor (At2g25000).
 21. The transgenic plant of claim 1, wherein the plant is species of woody, ornamental, decorative, crop, cereal, fruit, or vegetable.
 22. The transgenic plant of claim 1, wherein said plant is a species of one of the following genuses: Acorus, Aegilops, Allium, Amborella, Antirrhinum, Apium, Arabidopsis, Arachis, Beta, Betula, Brassica, Capsicum, Ceratopteris, Citrus, Cryptomeria, Cycas, Descurainia, Eschscholzia, Eucalyptus, Glycine, Gossypium, Hedyotis, Helianthus, Hordeum, Ipomoea, Lactuca, Linum, Liriodendron, Lotus, Lupinus, Lycopersicon, Medicago, Mesembryanthemum, Nicotiana, Nuphar, Pennisetum, Persea, Phaseolus, Physcomitrella, Picea, Pinus, Poncirus, Populus, Prunus, Robinia, Rosa, Saccharum, Schedonorus, Secale, Sesamum, Solanum, Sorghum, Stevia, Thellungiella, Theobroma, Triphysaria, Triticum, Vitis, Zea, or Zinnia.
 23. A transgenic plant-derived commercial product, which is derived from a transgenic plant according to claim 1, wherein said product comprises said construct.
 24. The transgenic plant-derived commercial product of claim 23, wherein said transgenic plant is a tree, and said commercial product is pulp, paper, a paper product, or lumber.
 25. The transgenic plant-derived commercial product of claim 23, wherein said transgenic plant is tobacco, and said commercial product is a cigarette, cigar, or chewing tobacco.
 26. The transgenic plant-derived commercial product of claim 23, wherein said transgenic plant is a crop, and said commercial product is a fruit or vegetable.
 27. The transgenic plant-derived commercial product of claim 23, wherein said transgenic plant is a grain, and said commercial product is bread, flour, cereal, oat meal, or rice.
 28. The transgenic plant-derived commercial product of claim 23, wherein said commercial product is a biofuel or plant oil. 